AlfalfaGEDB | MS.gene54939

M. sativa cultivar XinJiangDaYe / MS.gene54939

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54939.t1	XP_024636235.1	94.2	243	14	0	1	243	1	243	4.30E-110	407.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54939.t1	Q9M202	27.6	217	104	5	9	196	6	198	1.6e-09	64.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54939.t1	A0A396I2K7	67.3	245	74	1	1	239	1	245	1.2e-66	262.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene54939.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54939.t1	MTR_4g036615	80.769	104	20	0	78	181	1	104	1.96e-56	176
MS.gene54939.t1	MTR_3g408380	27.547	265	148	7	3	229	2	260	8.69e-20	85.9
MS.gene54939.t1	MTR_4g100860	27.820	266	144	8	9	229	6	268	1.15e-17	80.9
MS.gene54939.t1	MTR_3g408420	25.806	279	139	7	7	232	6	269	1.82e-16	77.0
MS.gene54939.t1	MTR_3g008310	26.038	265	158	7	3	229	2	266	7.38e-16	75.1
MS.gene54939.t1	MTR_0160s0030	41.975	81	37	1	170	240	239	319	4.46e-14	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54939.t1	AT3G60580	30.566	265	116	6	9	229	6	246	4.93e-19	84.3
MS.gene54939.t1	AT1G02030	45.570	79	30	2	171	236	160	238	3.02e-13	67.8
MS.gene54939.t1	AT5G61470	41.096	73	31	2	168	229	225	296	4.15e-12	65.1

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Find 60 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGATGGCGAAAGCAGTAC+AGG	0.507873	4.3:+63387277	MS.gene54939:CDS
AAGAGCGATGGGAAAGCCTG+TGG	0.598960	4.3:+63386830	MS.gene54939:CDS
AAGCCAGGTTCAACTGTGAG+AGG	0.622627	4.3:+63387326	MS.gene54939:CDS
AAGTCTGCTCAGGCACTCGG+TGG	0.670340	4.3:+63387472	MS.gene54939:CDS
AATTGGATCTCTTGCGGGTT+GGG	0.313326	4.3:-63387126	None:intergenic
ACAGAATCACAAATCAATAC+GGG	0.613334	4.3:-63387546	None:intergenic
ACCCGCAAGAGATCCAATTG+CGG	0.686880	4.3:+63387130	MS.gene54939:CDS
ACTTTGAAATTCCTTAGCAC+TGG	0.521740	4.3:-63387515	None:intergenic
AGAGCGATGGGAAAGCCTGT+GGG	0.654994	4.3:+63386831	MS.gene54939:CDS
AGATCTCATGTGGCCTCCAA+GGG	0.485485	4.3:-63386885	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGTTCCGATCTTATC+AGG	+	chr4.3:63387354-63387373	MS.gene54939:CDS	30.0%
GGATCAAGAAACAAAAAATG+AGG	+	chr4.3:63387251-63387270	MS.gene54939:CDS	30.0%
TGAACACTTTGTTGCAATTT+GGG	-	chr4.3:63387453-63387472	None:intergenic	30.0%
TTACAAAGATGCGCAAAAAA+GGG	+	chr4.3:63387225-63387244	MS.gene54939:CDS	30.0%
TTGAACACTTTGTTGCAATT+TGG	-	chr4.3:63387454-63387473	None:intergenic	30.0%
TTTACAAAGATGCGCAAAAA+AGG	+	chr4.3:63387224-63387243	MS.gene54939:CDS	30.0%
CAAAAAATGAGGGAAAACGA+TGG	+	chr4.3:63387262-63387281	MS.gene54939:CDS	35.0%
TACTCAAGCTGTAGACAATT+TGG	+	chr4.3:63386949-63386968	MS.gene54939:CDS	35.0%
TACTGCAAAAGAGACAATGA+TGG	+	chr4.3:63387397-63387416	MS.gene54939:CDS	35.0%
AAAGATGCGCAAAAAAGGGA+AGG	+	chr4.3:63387229-63387248	MS.gene54939:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	63386824	63387555	63386824	ID=MS.gene54939
chr4.3	mRNA	63386824	63387555	63386824	ID=MS.gene54939.t1;Parent=MS.gene54939
chr4.3	exon	63386824	63387555	63386824	ID=MS.gene54939.t1.exon1;Parent=MS.gene54939.t1
chr4.3	CDS	63386824	63387555	63386824	ID=cds.MS.gene54939.t1;Parent=MS.gene54939.t1

Gene Sequence

>MS.gene54939

ATGGAGAAGAGCGATGGGAAAGCCTGTGGGATTTGTGGGAAGTGGTTCTCCGGTGGGAAAGCCCTTGGAGGCCACATGAGATCTCACATGGTTCATTTGCCGATTGCTCCAAAGCTTGAAACTAATACTCAAGCTGTAGACAATTTGGCCGATTCAACCCATCGTCAAAATCAATTTGCTTCCTCACAGACTTGCCTTCCCGAAATACAACAAACACAGAATTTCCTATCCATGAAACAAAACTTCGCTGCCTCCTCTGCAAACTCAAACAGAGAAAATGAATCTGTGTCCAACCTGAAAAACCCAACCCGCAAGAGATCCAATTGCGGCCGCGAACTTAATGCTGCGGCTGATACAGAAGATATGTCAAGAGATCCAGGTGTTTTGATGTTATGGGGATTTTACAAAGATGCGCAAAAAAGGGAAGGGATCAAGAAACAAAAAATGAGGGAAAACGATGGCGAAAGCAGTACAGGTGACTCGCTTGCACAAGCAGACTCTGAAGCCAGGTTCAACTGTGAGAGGTGCGGAAAAATGTTCCGATCTTATCAGGCTCTTGGTGGGCACAGAGTATACTGCAAAAGAGACAATGATGGTGATTTAATAGATCAGAAACCTTTTCACTGCCCAAATTGCAACAAAGTGTTCAAGTCTGCTCAGGCACTCGGTGGACACAAGAGGGTACACTCTTCCAGTGCTAAGGAATTTCAAAGTGTGCCACACCCGTATTGA

Protein sequence

>MS.gene54939.t1

MEKSDGKACGICGKWFSGGKALGGHMRSHMVHLPIAPKLETNTQAVDNLADSTHRQNQFASSQTCLPEIQQTQNFLSMKQNFAASSANSNRENESVSNLKNPTRKRSNCGRELNAAADTEDMSRDPGVLMLWGFYKDAQKREGIKKQKMRENDGESSTGDSLAQADSEARFNCERCGKMFRSYQALGGHRVYCKRDNDGDLIDQKPFHCPNCNKVFKSAQALGGHKRVHSSSAKEFQSVPHPY