Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54963.t1 | XP_003624470.1 | 84.8 | 296 | 20 | 2 | 1 | 275 | 23 | 314 | 5.90E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54963.t1 | Q9LW31 | 52.1 | 240 | 65 | 5 | 78 | 275 | 82 | 313 | 9.1e-57 | 221.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54963.t1 | Q2HUJ5 | 84.8 | 296 | 20 | 2 | 1 | 275 | 23 | 314 | 4.2e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene54963.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54963.t1 | MTR_7g083700 | 89.865 | 296 | 5 | 2 | 1 | 275 | 23 | 314 | 0.0 | 540 |
| MS.gene54963.t1 | MTR_7g059330 | 54.054 | 111 | 51 | 0 | 82 | 192 | 618 | 728 | 1.61e-33 | 129 |
| MS.gene54963.t1 | MTR_2g011940 | 39.394 | 132 | 71 | 3 | 87 | 213 | 352 | 479 | 4.03e-21 | 93.2 |
| MS.gene54963.t1 | MTR_2g011940 | 39.394 | 132 | 71 | 3 | 87 | 213 | 352 | 479 | 4.36e-21 | 93.2 |
| MS.gene54963.t1 | MTR_5g075410 | 49.412 | 85 | 42 | 1 | 87 | 171 | 321 | 404 | 2.51e-20 | 90.9 |
| MS.gene54963.t1 | MTR_4g028130 | 39.806 | 103 | 61 | 1 | 87 | 189 | 314 | 415 | 2.77e-20 | 90.9 |
| MS.gene54963.t1 | MTR_4g088605 | 35.714 | 154 | 91 | 4 | 44 | 191 | 56 | 207 | 4.21e-20 | 87.8 |
| MS.gene54963.t1 | MTR_3g467380 | 40.777 | 103 | 60 | 1 | 87 | 189 | 338 | 439 | 5.18e-20 | 90.1 |
| MS.gene54963.t1 | MTR_2g011940 | 41.463 | 123 | 63 | 3 | 87 | 204 | 343 | 461 | 1.45e-19 | 88.6 |
| MS.gene54963.t1 | MTR_4g028130 | 39.048 | 105 | 63 | 1 | 87 | 191 | 314 | 417 | 6.66e-19 | 86.7 |
| MS.gene54963.t1 | MTR_4g028130 | 39.048 | 105 | 63 | 1 | 87 | 191 | 314 | 417 | 8.45e-19 | 86.7 |
| MS.gene54963.t1 | MTR_7g073240 | 32.500 | 160 | 91 | 4 | 36 | 189 | 74 | 222 | 1.82e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54963.t1 | AT3G26790 | 50.680 | 294 | 100 | 10 | 23 | 275 | 24 | 313 | 9.62e-85 | 256 |
| MS.gene54963.t1 | AT3G24650 | 57.407 | 108 | 46 | 0 | 81 | 188 | 565 | 672 | 8.30e-35 | 132 |
| MS.gene54963.t1 | AT1G28300 | 49.606 | 127 | 64 | 0 | 79 | 205 | 162 | 288 | 1.09e-34 | 128 |
| MS.gene54963.t1 | AT2G30470 | 39.806 | 103 | 61 | 1 | 87 | 189 | 294 | 395 | 1.43e-21 | 94.7 |
| MS.gene54963.t1 | AT4G32010 | 37.500 | 128 | 70 | 2 | 87 | 214 | 281 | 398 | 2.99e-21 | 93.6 |
| MS.gene54963.t1 | AT4G32010 | 37.500 | 128 | 70 | 2 | 87 | 214 | 285 | 402 | 3.00e-21 | 93.6 |
| MS.gene54963.t1 | AT4G21550 | 34.848 | 132 | 79 | 4 | 87 | 218 | 327 | 451 | 1.65e-17 | 82.4 |
| MS.gene54963.t1 | AT4G21550 | 34.848 | 132 | 79 | 4 | 87 | 218 | 327 | 451 | 1.66e-17 | 82.4 |
| MS.gene54963.t1 | AT4G21550 | 38.835 | 103 | 60 | 2 | 87 | 189 | 327 | 426 | 1.79e-17 | 82.4 |
| MS.gene54963.t1 | AT1G13260 | 32.000 | 150 | 92 | 6 | 49 | 193 | 151 | 295 | 2.01e-11 | 63.9 |
| MS.gene54963.t1 | AT4G01500 | 31.405 | 121 | 79 | 3 | 56 | 175 | 4 | 121 | 2.35e-11 | 63.5 |
Find 49 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTCTTCAACTCCTTT+TGG | 0.172423 | 7.2:+23663260 | None:intergenic |
| TGATCCAATTCTTGAGTAAT+TGG | 0.227933 | 7.2:+23662194 | None:intergenic |
| ATTATCTTGGTAAACCATAA+TGG | 0.319330 | 7.2:+23662552 | None:intergenic |
| GGTTTAGTTGCTGCTGCATT+TGG | 0.326686 | 7.2:-23665289 | MS.gene54963:CDS |
| ATTGGATCAGTTGAAACATT+TGG | 0.328924 | 7.2:-23662180 | MS.gene54963:CDS |
| TACATTCGACTGTTATTGTT+AGG | 0.354796 | 7.2:+23662720 | None:intergenic |
| TGCATTACTACAGGTAATTC+AGG | 0.355023 | 7.2:-23662415 | MS.gene54963:intron |
| ATGACCAATTACTCAAGAAT+TGG | 0.363460 | 7.2:-23662198 | MS.gene54963:CDS |
| ACGCTTTGGAGACTCCATTA+TGG | 0.373590 | 7.2:-23662566 | MS.gene54963:CDS |
| GAATTCCTTCCTTCGATTCA+AGG | 0.374741 | 7.2:+23663057 | None:intergenic |
| CTGCATTTGGAACTGTTCAT+AGG | 0.379357 | 7.2:-23665276 | MS.gene54963:CDS |
| AACAACAACAACAAGATTAA+CGG | 0.429296 | 7.2:-23665340 | MS.gene54963:CDS |
| AGCACACATGGTCTACGCTT+TGG | 0.436188 | 7.2:-23662580 | MS.gene54963:CDS |
| TTGTGATCAAGATGAGTATA+TGG | 0.437591 | 7.2:-23662382 | MS.gene54963:CDS |
| CCTTCCTTCGATTCAAGGAC+AGG | 0.443951 | 7.2:+23663062 | None:intergenic |
| GAACTGTTCATAGGAAGAAA+AGG | 0.451838 | 7.2:-23665267 | MS.gene54963:CDS |
| GTTTATAGGAAATCGATCAT+AGG | 0.469630 | 7.2:-23663300 | MS.gene54963:intron |
| ATATAGATGGTCTTCATGTA+TGG | 0.471743 | 7.2:-23663019 | MS.gene54963:CDS |
| ACAACAACAACAAGATTAAC+GGG | 0.472192 | 7.2:-23665339 | MS.gene54963:CDS |
| TATCTTCGTCGATGATTATG+AGG | 0.472524 | 7.2:-23662334 | MS.gene54963:CDS |
| TCTCTTGATGACTTCTATTG+AGG | 0.486619 | 7.2:-23662141 | None:intergenic |
| ATGTATGGAGTTTCAAGTAC+AGG | 0.489515 | 7.2:-23663004 | MS.gene54963:intron |
| GAGGCGTGTGGTTTCATGGC+AGG | 0.489847 | 7.2:-23665403 | None:intergenic |
| CTCAGCATGAATGATATAGA+TGG | 0.492894 | 7.2:-23663032 | MS.gene54963:CDS |
| ATACTTGTATCATTCATTGC+AGG | 0.501561 | 7.2:+23662282 | None:intergenic |
| CCTTCCTGTCCTTGAATCGA+AGG | 0.505006 | 7.2:-23663066 | MS.gene54963:CDS |
| TAGGAGAATGGTGTTGCCTA+AGG | 0.511895 | 7.2:-23663224 | MS.gene54963:intron |
| TAGGCAACACCATTCTCCTA+AGG | 0.515359 | 7.2:+23663227 | None:intergenic |
| AGATTAACGGGTCGGGTCAA+CGG | 0.518369 | 7.2:-23665327 | MS.gene54963:CDS |
| TGTTAGCTCCCTTAGGAGAA+TGG | 0.536299 | 7.2:-23663236 | MS.gene54963:CDS |
| CAACGGATCCATCATGATCA+TGG | 0.538714 | 7.2:-23665310 | MS.gene54963:CDS |
| CTAGGGTTTGTCAACGTGAA+AGG | 0.540011 | 7.2:-23665367 | MS.gene54963:CDS |
| GGAGACTTTGTTAGCACACA+TGG | 0.544519 | 7.2:-23662592 | MS.gene54963:CDS |
| GCAGGTGTTGAAGATGAACT+AGG | 0.544873 | 7.2:-23665385 | MS.gene54963:CDS |
| CAACTAAACCATGATCATGA+TGG | 0.545398 | 7.2:+23665302 | None:intergenic |
| AACAACAAGATTAACGGGTC+GGG | 0.549708 | 7.2:-23665334 | MS.gene54963:CDS |
| ATAGGAAGAAAAGGATGGCT+AGG | 0.560627 | 7.2:-23665258 | MS.gene54963:CDS |
| CAACAACAAGATTAACGGGT+CGG | 0.560654 | 7.2:-23665335 | MS.gene54963:CDS |
| ACAGTGATGTTAGCTCCCTT+AGG | 0.583324 | 7.2:-23663243 | MS.gene54963:CDS |
| CAGGTGTTGAAGATGAACTA+GGG | 0.583873 | 7.2:-23665384 | MS.gene54963:CDS |
| CCTGTCCTTGAATCGAAGGA+AGG | 0.585425 | 7.2:-23663062 | MS.gene54963:CDS |
| TATAGGAAATCGATCATAGG+AGG | 0.597683 | 7.2:-23663297 | MS.gene54963:intron |
| AGGCAACACCATTCTCCTAA+GGG | 0.607377 | 7.2:+23663228 | None:intergenic |
| CCTTCGATTCAAGGACAGGA+AGG | 0.620428 | 7.2:+23663066 | None:intergenic |
| TGGAGAGATTGGCACGTGCG+AGG | 0.625104 | 7.2:+23665165 | None:intergenic |
| ATGTATGTACTTGAAAACAC+TGG | 0.631186 | 7.2:-23662702 | MS.gene54963:intron |
| TGTTCATAGGAAGAAAAGGA+TGG | 0.632115 | 7.2:-23665263 | MS.gene54963:CDS |
| AAGTGGTGAGTCATTTGAGA+TGG | 0.633283 | 7.2:+23662239 | None:intergenic |
| TAACTTGCAGAAAGCAGCAG+AGG | 0.635910 | 7.2:-23663093 | MS.gene54963:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTTATTATATTATA+AGG | + | chr7.2:23664417-23664436 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAACTTCT+TGG | + | chr7.2:23662711-23662730 | None:intergenic | 10.0% |
| !! | AGTAATAATATGTATAAAAA+TGG | - | chr7.2:23663065-23663084 | MS.gene54963:CDS | 10.0% |
| !!! | TTAAAATATTTGATGATTAT+TGG | - | chr7.2:23663899-23663918 | MS.gene54963:intron | 10.0% |
| !!! | TTTTTATACATATTATTACT+TGG | + | chr7.2:23663065-23663084 | None:intergenic | 10.0% |
| !! | AAAATCTATACAATTAACAT+CGG | + | chr7.2:23662587-23662606 | None:intergenic | 15.0% |
| !! | AAATTAGTTAATACCATAAA+TGG | - | chr7.2:23664189-23664208 | MS.gene54963:intron | 15.0% |
| !! | AAATTTAATGCAATTACATT+CGG | - | chr7.2:23664608-23664627 | MS.gene54963:intron | 15.0% |
| !! | ATATGTATAAAAATGGAAAA+AGG | - | chr7.2:23663072-23663091 | MS.gene54963:CDS | 15.0% |
| !! | ATTATATTATAAGGTTATGA+TGG | + | chr7.2:23664408-23664427 | None:intergenic | 15.0% |
| !! | TGTTAATTAATACTATTCAT+CGG | - | chr7.2:23663235-23663254 | MS.gene54963:CDS | 15.0% |
| !! | TGTTGGATATAAATATAATA+TGG | - | chr7.2:23664043-23664062 | MS.gene54963:intron | 15.0% |
| !!! | AATTACGAAAGTTAATTTTA+CGG | - | chr7.2:23663635-23663654 | MS.gene54963:intron | 15.0% |
| !!! | TGAATGAATAAACATTATTT+TGG | + | chr7.2:23663177-23663196 | None:intergenic | 15.0% |
| !!! | TTAGTTTGTTAAATATTTTC+AGG | - | chr7.2:23664918-23664937 | MS.gene54963:intron | 15.0% |
| !! | AATTGCATTAAATTTCATTC+TGG | + | chr7.2:23664603-23664622 | None:intergenic | 20.0% |
| !! | ATAATTAAATAAAAGGGAAG+TGG | - | chr7.2:23662928-23662947 | MS.gene54963:intron | 20.0% |
| !! | CAATTCAAAAGATTAATCTT+TGG | + | chr7.2:23662769-23662788 | None:intergenic | 20.0% |
| !! | TTAACTATATCAATGTGTAT+AGG | - | chr7.2:23663321-23663340 | MS.gene54963:intron | 20.0% |
| !!! | AAATATTTGATGATTATTGG+TGG | - | chr7.2:23663902-23663921 | MS.gene54963:intron | 20.0% |
| !!! | AAGTAATGCTTATAGAATTT+TGG | - | chr7.2:23663280-23663299 | MS.gene54963:CDS | 20.0% |
| !!! | AATTGTACTTTAAAGTCATT+TGG | - | chr7.2:23664712-23664731 | MS.gene54963:intron | 20.0% |
| !!! | AATTGTGATTTTGATTATCT+TGG | + | chr7.2:23664995-23665014 | None:intergenic | 20.0% |
| !!! | ACAATTTTCATTCTGTTTAT+AGG | - | chr7.2:23664217-23664236 | MS.gene54963:intron | 20.0% |
| !!! | ATTACGAAAGTTAATTTTAC+GGG | - | chr7.2:23663636-23663655 | MS.gene54963:intron | 20.0% |
| !!! | ATTGTACTTTAAAGTCATTT+GGG | - | chr7.2:23664713-23664732 | MS.gene54963:intron | 20.0% |
| !!! | CAAAGATTAATCTTTTGAAT+TGG | - | chr7.2:23662767-23662786 | MS.gene54963:intron | 20.0% |
| ! | AAACAGAATGAAAATTGTCA+AGG | + | chr7.2:23664215-23664234 | None:intergenic | 25.0% |
| ! | AACAACAACAACAAGATTAA+CGG | - | chr7.2:23662191-23662210 | MS.gene54963:CDS | 25.0% |
| ! | AATTCAGAAGTCAATTTCAT+AGG | - | chr7.2:23663472-23663491 | MS.gene54963:intron | 25.0% |
| ! | AATTCAGAAGTCTATTCTAT+GGG | - | chr7.2:23663350-23663369 | MS.gene54963:intron | 25.0% |
| ! | ACATAAATTCCCAAATGTAA+AGG | + | chr7.2:23663937-23663956 | None:intergenic | 25.0% |
| ! | ATAAAAATGGAAAAAGGATG+AGG | - | chr7.2:23663078-23663097 | MS.gene54963:CDS | 25.0% |
| ! | ATAGTTAAACCAAAAAGACA+AGG | + | chr7.2:23663309-23663328 | None:intergenic | 25.0% |
| ! | ATTATCTTGGTAAACCATAA+TGG | + | chr7.2:23664982-23665001 | None:intergenic | 25.0% |
| ! | TAAATAGAGCCTTTACATTT+GGG | - | chr7.2:23663925-23663944 | MS.gene54963:intron | 25.0% |
| ! | TAGTAGTAGTTTGATCTTAA+TGG | - | chr7.2:23662648-23662667 | MS.gene54963:intron | 25.0% |
| ! | TGACAGGAAAAAAAAATACA+TGG | + | chr7.2:23665094-23665113 | None:intergenic | 25.0% |
| !! | TATTTCTATTTCAATACTGC+AGG | - | chr7.2:23664782-23664801 | MS.gene54963:intron | 25.0% |
| !! | TTATCTTCATTTTCTTGTGT+GGG | + | chr7.2:23662875-23662894 | None:intergenic | 25.0% |
| !! | TTTATCTTCATTTTCTTGTG+TGG | + | chr7.2:23662876-23662895 | None:intergenic | 25.0% |
| !! | TTTTTATTATCTGTCCTAGT+TGG | - | chr7.2:23662481-23662500 | MS.gene54963:intron | 25.0% |
| !!! | ATTTCGAAAGTCGATTTTAT+TGG | - | chr7.2:23663570-23663589 | MS.gene54963:intron | 25.0% |
| !!! | ATTTTTGAGATGAATAGTGA+TGG | + | chr7.2:23662321-23662340 | None:intergenic | 25.0% |
| AAAATTGTCAAGGCCATTTA+TGG | + | chr7.2:23664205-23664224 | None:intergenic | 30.0% | |
| ACAACAACAACAAGATTAAC+GGG | - | chr7.2:23662192-23662211 | MS.gene54963:CDS | 30.0% | |
| AGCAAAGTTTAACTCTCAAA+TGG | + | chr7.2:23664888-23664907 | None:intergenic | 30.0% | |
| AGTAAATGCTGCAAAAAGTT+GGG | + | chr7.2:23664136-23664155 | None:intergenic | 30.0% | |
| ATACTTGTATCATTCATTGC+AGG | + | chr7.2:23665252-23665271 | None:intergenic | 30.0% | |
| ATATAGATGGTCTTCATGTA+TGG | - | chr7.2:23664512-23664531 | MS.gene54963:intron | 30.0% | |
| ATGACCAATTACTCAAGAAT+TGG | - | chr7.2:23665333-23665352 | MS.gene54963:CDS | 30.0% | |
| ATGTATGTACTTGAAAACAC+TGG | - | chr7.2:23664829-23664848 | MS.gene54963:intron | 30.0% | |
| ATTGGATCAGTTGAAACATT+TGG | - | chr7.2:23665351-23665370 | MS.gene54963:CDS | 30.0% | |
| CAATTCAGAAGTCTATTCTA+TGG | - | chr7.2:23663349-23663368 | MS.gene54963:intron | 30.0% | |
| GAAATGAAGTCTATAAGCAA+AGG | + | chr7.2:23664338-23664357 | None:intergenic | 30.0% | |
| GGTCAACTATATCATGTATA+CGG | - | chr7.2:23663493-23663512 | MS.gene54963:intron | 30.0% | |
| GTAAATAGAGCCTTTACATT+TGG | - | chr7.2:23663924-23663943 | MS.gene54963:intron | 30.0% | |
| GTATTTCAAGATAAGCCATA+AGG | - | chr7.2:23663955-23663974 | MS.gene54963:intron | 30.0% | |
| GTCAATCATTCTTTATCTGA+CGG | + | chr7.2:23664682-23664701 | None:intergenic | 30.0% | |
| GTTTATAGGAAATCGATCAT+AGG | - | chr7.2:23664231-23664250 | MS.gene54963:intron | 30.0% | |
| TACATTCGACTGTTATTGTT+AGG | + | chr7.2:23664814-23664833 | None:intergenic | 30.0% | |
| TAGTAAATGCTGCAAAAAGT+TGG | + | chr7.2:23664137-23664156 | None:intergenic | 30.0% | |
| TGATCCAATTCTTGAGTAAT+TGG | + | chr7.2:23665340-23665359 | None:intergenic | 30.0% | |
| TTGTGATCAAGATGAGTATA+TGG | - | chr7.2:23665149-23665168 | MS.gene54963:intron | 30.0% | |
| ! | AAGTTAATTTTACGGGTCAA+CGG | - | chr7.2:23663643-23663662 | MS.gene54963:intron | 30.0% |
| ! | AAGTTTTTGCAAATCCAACT+AGG | + | chr7.2:23662498-23662517 | None:intergenic | 30.0% |
| ! | TATTTCAATACTGCAGGTTT+TGG | - | chr7.2:23664788-23664807 | MS.gene54963:intron | 30.0% |
| !! | AAGTCGATTTTATTGGTCAA+CGG | - | chr7.2:23663577-23663596 | MS.gene54963:intron | 30.0% |
| !! | ATTTCGGAAGTCGATTTTAT+GGG | - | chr7.2:23663521-23663540 | MS.gene54963:intron | 30.0% |
| !! | CTACTCATTTTAGAAGTCAA+CGG | - | chr7.2:23663393-23663412 | MS.gene54963:intron | 30.0% |
| !! | TTTTAACTCTTTGCTAGAAG+AGG | - | chr7.2:23663102-23663121 | MS.gene54963:intron | 30.0% |
| AAAAAAAAACTCACACGTGC+GGG | + | chr7.2:23662419-23662438 | None:intergenic | 35.0% | |
| AAGAACTTCGTCATCTATTG+TGG | + | chr7.2:23662799-23662818 | None:intergenic | 35.0% | |
| AGATTTAGGGAACCAAAAGT+AGG | + | chr7.2:23663864-23663883 | None:intergenic | 35.0% | |
| ATAAAAGGGAAGTGGATGTA+TGG | - | chr7.2:23662936-23662955 | MS.gene54963:intron | 35.0% | |
| ATCGAGTCGATCTAAGTTAT+TGG | + | chr7.2:23663766-23663785 | None:intergenic | 35.0% | |
| CAACTAAACCATGATCATGA+TGG | + | chr7.2:23662232-23662251 | None:intergenic | 35.0% | |
| CACGTATATGCTACTCATTT+CGG | - | chr7.2:23663419-23663438 | MS.gene54963:intron | 35.0% | |
| CTCAGCATGAATGATATAGA+TGG | - | chr7.2:23664499-23664518 | MS.gene54963:intron | 35.0% | |
| GAAAAAAAAACTCACACGTG+CGG | + | chr7.2:23662420-23662439 | None:intergenic | 35.0% | |
| GAACTGTTCATAGGAAGAAA+AGG | - | chr7.2:23662264-23662283 | MS.gene54963:CDS | 35.0% | |
| GAATGAAAAAGAGGTGGAAT+TGG | + | chr7.2:23662389-23662408 | None:intergenic | 35.0% | |
| GGGTGTGTATAAATTAGTGT+AGG | + | chr7.2:23662855-23662874 | None:intergenic | 35.0% | |
| GTAGTAGTAGTAGTAGAAGA+AGG | + | chr7.2:23662347-23662366 | None:intergenic | 35.0% | |
| TAAAAGGGAAGTGGATGTAT+GGG | - | chr7.2:23662937-23662956 | MS.gene54963:intron | 35.0% | |
| TATAGGAAATCGATCATAGG+AGG | - | chr7.2:23664234-23664253 | MS.gene54963:intron | 35.0% | |
| TATCTTCGTCGATGATTATG+AGG | - | chr7.2:23665197-23665216 | MS.gene54963:CDS | 35.0% | |
| TCTCGATCGTTTATAGAGAT+CGG | - | chr7.2:23663682-23663701 | MS.gene54963:intron | 35.0% | |
| TGCATTACTACAGGTAATTC+AGG | - | chr7.2:23665116-23665135 | MS.gene54963:intron | 35.0% | |
| TGTTCATAGGAAGAAAAGGA+TGG | - | chr7.2:23662268-23662287 | MS.gene54963:CDS | 35.0% | |
| TTTACTCGATGCTCTTATGT+TGG | - | chr7.2:23664026-23664045 | MS.gene54963:intron | 35.0% | |
| ! | AAGCTGAAAACTCCTACTTT+TGG | - | chr7.2:23663849-23663868 | MS.gene54963:intron | 35.0% |
| ! | ATGTATGGAGTTTCAAGTAC+AGG | - | chr7.2:23664527-23664546 | MS.gene54963:intron | 35.0% |
| ! | GTTGAGATTCCTTTTCCAAA+AGG | - | chr7.2:23664256-23664275 | MS.gene54963:intron | 35.0% |
| !! | CAACGGTGTTAAGTCATTTT+AGG | + | chr7.2:23662822-23662841 | None:intergenic | 35.0% |
| !! | CATTTCGGAAGTCGATTTTA+TGG | - | chr7.2:23663520-23663539 | MS.gene54963:intron | 35.0% |
| !! | TCTTCAACTCCTTTTGGAAA+AGG | + | chr7.2:23664268-23664287 | None:intergenic | 35.0% |
| !! | TTTTGGTGACCTTGTCTTTT+TGG | - | chr7.2:23663297-23663316 | MS.gene54963:intron | 35.0% |
| !!! | CTTTTGGTTCCCTAAATCTT+TGG | - | chr7.2:23663865-23663884 | MS.gene54963:intron | 35.0% |
| !!! | GACTCACCACTTGATTTTTT+GGG | - | chr7.2:23665303-23665322 | MS.gene54963:CDS | 35.0% |
| !!! | TGACTCACCACTTGATTTTT+TGG | - | chr7.2:23665302-23665321 | MS.gene54963:CDS | 35.0% |
| AAAGAGTAACGGTGGTAAAG+AGG | + | chr7.2:23664009-23664028 | None:intergenic | 40.0% | |
| AAGTGGTGAGTCATTTGAGA+TGG | + | chr7.2:23665295-23665314 | None:intergenic | 40.0% | |
| ACACCACCACCAAAGATTTA+GGG | + | chr7.2:23663877-23663896 | None:intergenic | 40.0% | |
| AGGCAGAATCTATGTCTGTA+CGG | - | chr7.2:23663122-23663141 | MS.gene54963:intron | 40.0% | |
| ATAAGCAAAGGTCAGACCTT+AGG | + | chr7.2:23664326-23664345 | None:intergenic | 40.0% | |
| ATAGGAAGAAAAGGATGGCT+AGG | - | chr7.2:23662273-23662292 | MS.gene54963:CDS | 40.0% | |
| CATGTATACGGCACTCATTT+CGG | - | chr7.2:23663505-23663524 | MS.gene54963:intron | 40.0% | |
| CCTGTAGTAATGCATATGAC+AGG | + | chr7.2:23665110-23665129 | None:intergenic | 40.0% | |
| CCTGTCATATGCATTACTAC+AGG | - | chr7.2:23665107-23665126 | MS.gene54963:intron | 40.0% | |
| CTGCTATGTGCATACATTGT+TGG | - | chr7.2:23664551-23664570 | MS.gene54963:intron | 40.0% | |
| CTTAGTCAATGTCTAGTCCT+TGG | - | chr7.2:23663826-23663845 | MS.gene54963:intron | 40.0% | |
| GAATTCCTTCCTTCGATTCA+AGG | + | chr7.2:23664477-23664496 | None:intergenic | 40.0% | |
| GATCCACCCAAAAAATCAAG+TGG | + | chr7.2:23665312-23665331 | None:intergenic | 40.0% | |
| GTGTAGGTCTGAGAATACAA+CGG | + | chr7.2:23662839-23662858 | None:intergenic | 40.0% | |
| TCACGTGACTTTCGCAAATT+GGG | + | chr7.2:23663727-23663746 | None:intergenic | 40.0% | |
| TGTACAGTCACACACTTACA+CGG | - | chr7.2:23664643-23664662 | MS.gene54963:intron | 40.0% | |
| TTGGTTCCCTAAATCTTTGG+TGG | - | chr7.2:23663868-23663887 | MS.gene54963:intron | 40.0% | |
| ! | AACAACAAGATTAACGGGTC+GGG | - | chr7.2:23662197-23662216 | MS.gene54963:CDS | 40.0% |
| ! | CAACAACAAGATTAACGGGT+CGG | - | chr7.2:23662196-23662215 | MS.gene54963:CDS | 40.0% |
| ! | CACTGTTCTTCAACTCCTTT+TGG | + | chr7.2:23664274-23664293 | None:intergenic | 40.0% |
| ! | CTGCATTTGGAACTGTTCAT+AGG | - | chr7.2:23662255-23662274 | MS.gene54963:CDS | 40.0% |
| !! | CAGGTGTTGAAGATGAACTA+GGG | - | chr7.2:23662147-23662166 | MS.gene54963:CDS | 40.0% |
| !! | GAGCATCGAGTAAAGAGTAA+CGG | + | chr7.2:23664020-23664039 | None:intergenic | 40.0% |
| !!! | ATTATTTTGGTCATTGCCCG+TGG | + | chr7.2:23663164-23663183 | None:intergenic | 40.0% |
| !!! | TCACCACTTGATTTTTTGGG+TGG | - | chr7.2:23665306-23665325 | MS.gene54963:CDS | 40.0% |
| ACAGTGATGTTAGCTCCCTT+AGG | - | chr7.2:23664288-23664307 | MS.gene54963:intron | 45.0% | |
| AGAGGTGGAATTGGAGAGAT+TGG | + | chr7.2:23662380-23662399 | None:intergenic | 45.0% | |
| AGGCAACACCATTCTCCTAA+GGG | + | chr7.2:23664306-23664325 | None:intergenic | 45.0% | |
| AGGCATGCTAGACAATGCTT+TGG | - | chr7.2:23663975-23663994 | MS.gene54963:intron | 45.0% | |
| CAACGGATCCATCATGATCA+TGG | - | chr7.2:23662221-23662240 | MS.gene54963:CDS | 45.0% | |
| CACACCACCACCAAAGATTT+AGG | + | chr7.2:23663878-23663897 | None:intergenic | 45.0% | |
| CATCGAGTAAAGAGTAACGG+TGG | + | chr7.2:23664017-23664036 | None:intergenic | 45.0% | |
| CTAGGGTTTGTCAACGTGAA+AGG | - | chr7.2:23662164-23662183 | MS.gene54963:CDS | 45.0% | |
| CTCACGTGACTTTCGCAAAT+TGG | + | chr7.2:23663728-23663747 | None:intergenic | 45.0% | |
| GCATTGTCTAGCATGCCTTA+TGG | + | chr7.2:23663973-23663992 | None:intergenic | 45.0% | |
| GGAGACTTTGTTAGCACACA+TGG | - | chr7.2:23664939-23664958 | MS.gene54963:intron | 45.0% | |
| GGAGGGAGAGAATGAAAAAG+AGG | + | chr7.2:23662398-23662417 | None:intergenic | 45.0% | |
| GGCATGCTAGACAATGCTTT+GGG | - | chr7.2:23663976-23663995 | MS.gene54963:intron | 45.0% | |
| GGGAGAGAATGAAAAAGAGG+TGG | + | chr7.2:23662395-23662414 | None:intergenic | 45.0% | |
| GGTTTAGTTGCTGCTGCATT+TGG | - | chr7.2:23662242-23662261 | MS.gene54963:CDS | 45.0% | |
| GTTCCCTAAATCTTTGGTGG+TGG | - | chr7.2:23663871-23663890 | MS.gene54963:intron | 45.0% | |
| TAGGCAACACCATTCTCCTA+AGG | + | chr7.2:23664307-23664326 | None:intergenic | 45.0% | |
| TGTTAGCTCCCTTAGGAGAA+TGG | - | chr7.2:23664295-23664314 | MS.gene54963:intron | 45.0% | |
| ! | GTAGGAGTTTTCAGCTTCCA+AGG | + | chr7.2:23663846-23663865 | None:intergenic | 45.0% |
| ! | TAACTTGCAGAAAGCAGCAG+AGG | - | chr7.2:23664438-23664457 | MS.gene54963:intron | 45.0% |
| !! | ACGCTTTGGAGACTCCATTA+TGG | - | chr7.2:23664965-23664984 | MS.gene54963:intron | 45.0% |
| !! | CTAAATCTTTGGTGGTGGTG+TGG | - | chr7.2:23663876-23663895 | MS.gene54963:intron | 45.0% |
| !! | GCAGGTGTTGAAGATGAACT+AGG | - | chr7.2:23662146-23662165 | MS.gene54963:CDS | 45.0% |
| !! | TAGGAGAATGGTGTTGCCTA+AGG | - | chr7.2:23664307-23664326 | MS.gene54963:intron | 45.0% |
| !! | AAATACAATAATTAAATAAA+AGG | - | chr7.2:23662921-23662940 | MS.gene54963:intron | 5.0% |
| !! | AATACAATAATTAAATAAAA+GGG | - | chr7.2:23662922-23662941 | MS.gene54963:intron | 5.0% |
| AAAAAACTCACACGTGCGGG+AGG | + | chr7.2:23662416-23662435 | None:intergenic | 50.0% | |
| AAAAACTCACACGTGCGGGA+GGG | + | chr7.2:23662415-23662434 | None:intergenic | 50.0% | |
| AATTTGCCTCGTGGATCCAC+GGG | - | chr7.2:23663145-23663164 | MS.gene54963:intron | 50.0% | |
| AGCACACATGGTCTACGCTT+TGG | - | chr7.2:23664951-23664970 | MS.gene54963:intron | 50.0% | |
| CCTGTCCTTGAATCGAAGGA+AGG | - | chr7.2:23664469-23664488 | MS.gene54963:intron | 50.0% | |
| CCTTCCTGTCCTTGAATCGA+AGG | - | chr7.2:23664465-23664484 | MS.gene54963:intron | 50.0% | |
| CCTTCCTTCGATTCAAGGAC+AGG | + | chr7.2:23664472-23664491 | None:intergenic | 50.0% | |
| CCTTCGATTCAAGGACAGGA+AGG | + | chr7.2:23664468-23664487 | None:intergenic | 50.0% | |
| GAATTTGCCTCGTGGATCCA+CGG | - | chr7.2:23663144-23663163 | MS.gene54963:intron | 50.0% | |
| TCTGTACGGAATTTGCCTCG+TGG | - | chr7.2:23663136-23663155 | MS.gene54963:intron | 50.0% | |
| ! | AGATTAACGGGTCGGGTCAA+CGG | - | chr7.2:23662204-23662223 | MS.gene54963:CDS | 50.0% |
| TCATTGCCCGTGGATCCACG+AGG | + | chr7.2:23663154-23663173 | None:intergenic | 60.0% | |
| TGGAGAGATTGGCACGTGCG+AGG | + | chr7.2:23662369-23662388 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 23662143 | 23665410 | 23662143 | ID=MS.gene54963 |
| chr7.2 | mRNA | 23662143 | 23665410 | 23662143 | ID=MS.gene54963.t1;Parent=MS.gene54963 |
| chr7.2 | exon | 23665180 | 23665410 | 23665180 | ID=MS.gene54963.t1.exon1;Parent=MS.gene54963.t1 |
| chr7.2 | CDS | 23665180 | 23665410 | 23665180 | ID=cds.MS.gene54963.t1;Parent=MS.gene54963.t1 |
| chr7.2 | exon | 23663225 | 23663314 | 23663225 | ID=MS.gene54963.t1.exon2;Parent=MS.gene54963.t1 |
| chr7.2 | CDS | 23663225 | 23663314 | 23663225 | ID=cds.MS.gene54963.t1;Parent=MS.gene54963.t1 |
| chr7.2 | exon | 23663005 | 23663105 | 23663005 | ID=MS.gene54963.t1.exon3;Parent=MS.gene54963.t1 |
| chr7.2 | CDS | 23663005 | 23663105 | 23663005 | ID=cds.MS.gene54963.t1;Parent=MS.gene54963.t1 |
| chr7.2 | exon | 23662703 | 23662749 | 23662703 | ID=MS.gene54963.t1.exon4;Parent=MS.gene54963.t1 |
| chr7.2 | CDS | 23662703 | 23662749 | 23662703 | ID=cds.MS.gene54963.t1;Parent=MS.gene54963.t1 |
| chr7.2 | exon | 23662537 | 23662613 | 23662537 | ID=MS.gene54963.t1.exon5;Parent=MS.gene54963.t1 |
| chr7.2 | CDS | 23662537 | 23662613 | 23662537 | ID=cds.MS.gene54963.t1;Parent=MS.gene54963.t1 |
| chr7.2 | exon | 23662143 | 23662424 | 23662143 | ID=MS.gene54963.t1.exon6;Parent=MS.gene54963.t1 |
| chr7.2 | CDS | 23662143 | 23662424 | 23662143 | ID=cds.MS.gene54963.t1;Parent=MS.gene54963.t1 |
| Gene Sequence |
| Protein sequence |
