AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54981

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54981.t1 MTR_7g083360 90.968 155 14 0 1 155 1 155 2.52e-105 297
MS.gene54981.t1 MTR_7g083370 81.481 135 25 0 1 135 1 135 5.87e-79 230
MS.gene54981.t1 MTR_7g083330 66.883 154 50 1 3 155 11 164 1.71e-70 211
MS.gene54981.t1 MTR_3g088110 33.824 136 83 4 6 138 3 134 9.75e-21 86.3
MS.gene54981.t1 MTR_3g109340 33.835 133 82 5 7 135 19 149 7.78e-20 84.7
MS.gene54981.t1 MTR_3g109340 33.835 133 82 5 7 135 19 149 7.88e-20 84.3
MS.gene54981.t1 MTR_2157s0010 33.088 136 84 4 3 133 1 134 5.26e-19 81.3
MS.gene54981.t1 MTR_7g085220 31.690 142 84 4 3 133 1 140 7.83e-19 81.6
MS.gene54981.t1 MTR_7g085260 34.091 132 79 5 8 133 15 144 1.06e-18 81.6
MS.gene54981.t1 MTR_8g059170 29.333 150 97 5 6 152 10 153 1.29e-18 80.9
MS.gene54981.t1 MTR_4g081870 32.117 137 86 5 4 136 3 136 1.60e-18 79.7
MS.gene54981.t1 MTR_5g076850 31.373 153 101 3 6 155 2 153 2.66e-18 80.9
MS.gene54981.t1 MTR_3g064580 32.051 156 98 5 6 154 2 156 6.09e-18 80.1
MS.gene54981.t1 MTR_4g089135 34.375 128 78 4 10 133 15 140 6.33e-18 79.3
MS.gene54981.t1 MTR_6g032770 32.624 141 88 5 4 139 12 150 6.97e-18 79.3
MS.gene54981.t1 MTR_3g096920 32.117 137 86 4 6 139 3 135 1.14e-17 77.8
MS.gene54981.t1 MTR_2g080010 31.469 143 89 5 2 140 7 144 1.20e-17 78.6
MS.gene54981.t1 MTR_7g005280 33.835 133 79 6 5 133 10 137 1.28e-17 77.4
MS.gene54981.t1 MTR_2g079990 30.496 141 89 5 6 143 12 146 1.40e-17 78.6
MS.gene54981.t1 MTR_2g079990 30.496 141 89 5 6 143 12 146 1.44e-17 78.2
MS.gene54981.t1 MTR_3g096920 32.353 136 85 4 6 138 3 134 1.51e-17 77.8
MS.gene54981.t1 MTR_1g008740 33.582 134 82 5 7 135 10 141 3.21e-17 77.4
MS.gene54981.t1 MTR_1g008740 33.582 134 82 5 7 135 24 155 3.89e-17 77.0
MS.gene54981.t1 MTR_8g094580 31.343 134 85 4 8 138 5 134 4.44e-17 76.3
MS.gene54981.t1 MTR_6g477900 32.824 131 84 3 6 133 2 131 5.25e-17 75.5
MS.gene54981.t1 MTR_2g064090 31.298 131 86 3 6 133 2 131 6.70e-17 76.3
MS.gene54981.t1 MTR_6g011860 33.333 135 85 3 9 140 14 146 8.22e-17 76.3
MS.gene54981.t1 MTR_6g084430 32.308 130 82 4 7 133 2 128 2.09e-16 74.7
MS.gene54981.t1 MTR_3g116070 34.091 132 80 5 7 133 20 149 2.58e-16 74.7
MS.gene54981.t1 MTR_3g070030 34.328 134 82 5 3 133 12 142 2.67e-16 74.7
MS.gene54981.t1 MTR_5g041940 33.083 133 82 6 8 136 1 130 3.10e-16 73.6
MS.gene54981.t1 MTR_5g040420 32.374 139 87 5 7 141 12 147 3.29e-16 74.7
MS.gene54981.t1 MTR_2g078700 32.061 131 83 5 7 133 20 148 5.04e-16 73.9
MS.gene54981.t1 MTR_6g012670 31.579 133 85 4 4 133 14 143 7.51e-16 73.2
MS.gene54981.t1 MTR_4g035590 32.278 158 100 6 1 154 1 155 8.29e-16 73.2
MS.gene54981.t1 MTR_5g090970 34.848 132 78 5 7 133 16 144 8.87e-16 72.8
MS.gene54981.t1 MTR_5g090970 34.848 132 77 5 7 133 16 143 1.01e-15 72.8
MS.gene54981.t1 MTR_2g068880 32.609 138 85 5 3 133 14 150 1.70e-15 72.0
MS.gene54981.t1 MTR_2g093810 31.429 140 87 5 10 145 14 148 2.31e-15 72.0
MS.gene54981.t1 MTR_7g011120 32.857 140 88 5 3 139 1 137 2.88e-15 71.6
MS.gene54981.t1 MTR_7g100990 30.827 133 86 4 5 133 6 136 2.95e-15 71.6
MS.gene54981.t1 MTR_2g068920 33.333 138 84 5 2 133 14 149 4.01e-15 70.9
MS.gene54981.t1 MTR_4g108760 30.769 130 84 5 7 133 14 140 5.44e-15 71.2
MS.gene54981.t1 MTR_2g062730 30.657 137 91 3 1 133 1 137 9.21e-15 70.5
MS.gene54981.t1 MTR_8g467490 32.639 144 89 6 7 146 12 151 1.08e-14 70.5
MS.gene54981.t1 MTR_3g096140 28.846 156 106 4 3 155 1 154 1.24e-14 69.3
MS.gene54981.t1 MTR_8g099750 28.148 135 89 4 3 133 7 137 2.36e-14 68.2
MS.gene54981.t1 MTR_3g096140 29.452 146 99 3 13 155 10 154 3.21e-14 68.9
MS.gene54981.t1 MTR_1g090720 30.709 127 84 3 10 133 42 167 3.35e-14 68.9
MS.gene54981.t1 MTR_7g011130 29.221 154 96 6 3 153 12 155 4.19e-14 68.6
MS.gene54981.t1 MTR_1g069805 29.927 137 90 4 1 133 1 135 5.23e-14 67.8
MS.gene54981.t1 MTR_5g069030 33.858 127 80 3 10 133 25 150 5.58e-14 68.6
MS.gene54981.t1 MTR_2g086880 32.540 126 80 5 13 135 21 144 1.16e-13 67.8
MS.gene54981.t1 MTR_1g097300 30.159 126 84 3 13 135 22 146 1.27e-13 67.4
MS.gene54981.t1 MTR_2g086880 32.540 126 80 5 13 135 21 144 1.43e-13 67.4
MS.gene54981.t1 MTR_4g036030 29.412 153 96 6 10 154 7 155 3.81e-13 65.9
MS.gene54981.t1 MTR_4g094302 34.127 126 73 5 10 133 11 128 7.72e-13 62.8
MS.gene54981.t1 MTR_4g094302 34.127 126 73 5 10 133 11 128 8.77e-13 63.2
MS.gene54981.t1 MTR_5g021710 30.137 146 94 5 5 146 3 144 9.74e-13 64.7
MS.gene54981.t1 MTR_7g097090 30.657 137 89 4 1 133 1 135 1.30e-12 63.9
MS.gene54981.t1 MTR_3g093040 30.233 129 86 3 8 133 106 233 3.13e-12 63.2
MS.gene54981.t1 MTR_8g076110 30.534 131 86 4 7 133 3 132 4.02e-12 62.8
MS.gene54981.t1 MTR_5g012080 28.906 128 87 3 10 133 7 134 4.05e-12 62.8
MS.gene54981.t1 MTR_2g086690 30.822 146 92 4 9 146 3 147 6.71e-12 61.6
MS.gene54981.t1 MTR_3g093050 29.801 151 99 5 10 154 22 171 9.69e-12 62.0
MS.gene54981.t1 MTR_3g093050 29.801 151 99 5 10 154 22 171 1.05e-11 62.0
MS.gene54981.t1 MTR_8g023900 29.457 129 85 5 10 133 12 139 1.06e-11 62.0
MS.gene54981.t1 MTR_1g096430 28.571 133 90 4 5 133 2 133 1.16e-11 61.6
MS.gene54981.t1 MTR_0036s0150 26.400 125 87 3 13 133 8 131 2.14e-11 61.2
MS.gene54981.t1 MTR_1g090723 29.104 134 87 5 13 142 11 140 2.19e-11 61.2
MS.gene54981.t1 MTR_4g134460 29.231 130 86 4 7 133 52 178 2.27e-11 60.8
MS.gene54981.t1 MTR_1g090723 29.104 134 87 5 13 142 11 140 2.37e-11 60.8
MS.gene54981.t1 MTR_1g090723 29.104 134 87 5 13 142 11 140 2.38e-11 60.8
MS.gene54981.t1 MTR_3g098810 27.737 137 89 4 3 133 7 139 2.93e-11 58.9
MS.gene54981.t1 MTR_3g098810 27.737 137 89 4 3 133 7 139 9.87e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54981.t1 AT5G18270 36.434 129 77 4 8 133 19 145 6.44e-21 87.4
MS.gene54981.t1 AT5G18270 35.659 129 78 4 8 133 19 145 1.02e-20 86.7
MS.gene54981.t1 AT5G13180 35.556 135 78 5 3 133 7 136 8.42e-20 83.2
MS.gene54981.t1 AT5G04410 33.117 154 90 6 10 154 9 158 9.19e-20 85.1
MS.gene54981.t1 AT1G76420 35.115 131 79 5 7 133 19 147 2.74e-19 82.8
MS.gene54981.t1 AT1G61110 31.690 142 89 4 2 140 8 144 2.96e-19 82.8
MS.gene54981.t1 AT5G63790 33.088 136 84 4 6 138 46 177 3.11e-19 82.4
MS.gene54981.t1 AT1G77450 31.507 146 93 4 1 143 1 142 3.22e-19 81.6
MS.gene54981.t1 AT5G63790 33.088 136 84 4 6 138 56 187 3.28e-19 82.4
MS.gene54981.t1 AT5G08790 32.353 136 85 4 6 138 3 134 5.41e-19 81.3
MS.gene54981.t1 AT3G04070 30.667 150 95 4 1 143 1 148 1.09e-18 81.3
MS.gene54981.t1 AT3G10500 33.071 127 81 3 10 133 9 134 1.17e-18 82.0
MS.gene54981.t1 AT3G04070 30.667 150 95 4 1 143 1 148 1.80e-18 80.9
MS.gene54981.t1 AT2G24430 34.351 131 80 5 7 133 13 141 2.14e-18 80.1
MS.gene54981.t1 AT2G24430 34.351 131 80 5 7 133 13 141 2.14e-18 80.1
MS.gene54981.t1 AT1G65910 30.323 155 101 4 6 154 2 155 4.86e-18 80.1
MS.gene54981.t1 AT3G15500 31.206 141 88 5 6 143 10 144 7.04e-18 79.0
MS.gene54981.t1 AT5G53950 33.594 128 79 5 10 133 17 142 8.63e-18 79.0
MS.gene54981.t1 AT3G17730 32.911 158 93 5 6 154 2 155 9.40e-18 77.4
MS.gene54981.t1 AT3G03200 32.877 146 90 4 6 148 2 142 1.51e-17 79.0
MS.gene54981.t1 AT5G17260 32.824 131 84 3 6 133 2 131 1.86e-17 78.6
MS.gene54981.t1 AT1G01720 32.090 134 84 4 8 138 5 134 2.23e-17 77.0
MS.gene54981.t1 AT3G10480 31.646 158 102 5 2 155 19 174 2.59e-17 78.2
MS.gene54981.t1 AT1G52890 31.915 141 87 5 6 143 10 144 2.63e-17 77.4
MS.gene54981.t1 AT3G04060 32.558 129 82 4 8 133 18 144 4.83e-17 76.6
MS.gene54981.t1 AT3G29035 33.077 130 81 5 7 133 21 147 5.89e-17 76.3
MS.gene54981.t1 AT5G39610 31.618 136 87 5 1 133 11 143 7.07e-17 75.9
MS.gene54981.t1 AT1G69490 31.724 145 90 6 4 145 3 141 9.03e-17 75.1
MS.gene54981.t1 AT1G54330 30.519 154 99 4 6 154 2 152 1.15e-16 75.5
MS.gene54981.t1 AT4G27410 30.534 131 85 4 6 133 10 137 2.04e-16 74.7
MS.gene54981.t1 AT5G61430 32.308 130 82 5 7 133 13 139 2.30e-16 74.7
MS.gene54981.t1 AT3G12910 32.886 149 89 5 8 149 20 164 2.34e-16 74.3
MS.gene54981.t1 AT5G07680 31.655 139 88 6 5 139 12 147 2.40e-16 74.7
MS.gene54981.t1 AT5G39820 30.769 143 92 5 7 145 18 157 2.66e-16 74.7
MS.gene54981.t1 AT3G15170 32.061 131 83 5 7 133 17 145 2.67e-16 74.3
MS.gene54981.t1 AT5G07680 32.353 136 85 6 8 139 1 133 4.15e-16 73.9
MS.gene54981.t1 AT2G33480 32.812 128 75 5 10 133 15 135 5.12e-16 73.2
MS.gene54981.t1 AT2G43000 33.846 130 79 5 7 133 16 141 5.37e-16 73.2
MS.gene54981.t1 AT2G33480 32.812 128 75 5 10 133 15 135 5.83e-16 73.2
MS.gene54981.t1 AT2G27300 35.714 126 76 5 13 135 17 140 7.43e-16 73.6
MS.gene54981.t1 AT3G15510 32.258 124 78 4 14 133 21 142 8.40e-16 73.6
MS.gene54981.t1 AT3G10480 31.447 159 102 6 2 155 19 175 9.21e-16 73.6
MS.gene54981.t1 AT3G10490 33.088 136 85 5 2 133 19 152 9.30e-16 72.0
MS.gene54981.t1 AT4G17980 28.369 141 97 3 10 146 6 146 1.33e-15 72.0
MS.gene54981.t1 AT4G17980 28.369 141 97 3 10 146 6 146 2.86e-15 71.2
MS.gene54981.t1 AT1G26870 32.576 132 80 6 7 133 14 141 6.09e-15 71.2
MS.gene54981.t1 AT3G10490 33.088 136 85 5 2 133 19 152 1.30e-14 70.5
MS.gene54981.t1 AT1G34190 30.000 150 94 5 13 154 19 165 1.62e-14 70.1
MS.gene54981.t1 AT1G33280 31.013 158 102 5 1 154 1 155 2.57e-14 68.9
MS.gene54981.t1 AT4G27410 27.397 146 87 4 6 133 10 154 3.10e-14 68.9
MS.gene54981.t1 AT4G36160 29.927 137 91 4 1 133 5 140 6.69e-14 68.2
MS.gene54981.t1 AT1G33060 31.496 127 83 3 10 133 24 149 7.06e-14 68.2
MS.gene54981.t1 AT4G36160 29.927 137 91 4 1 133 1 136 7.16e-14 68.2
MS.gene54981.t1 AT4G36160 29.927 137 91 4 1 133 1 136 7.16e-14 68.2
MS.gene54981.t1 AT1G33060 31.496 127 83 3 10 133 24 149 7.69e-14 68.2
MS.gene54981.t1 AT1G34180 30.159 126 84 3 13 135 19 143 1.30e-13 67.4
MS.gene54981.t1 AT4G10350 32.353 136 87 4 10 141 9 143 1.33e-13 67.0
MS.gene54981.t1 AT1G79580 25.478 157 113 3 2 154 9 165 1.38e-13 67.4
MS.gene54981.t1 AT1G79580 25.478 157 113 3 2 154 9 165 1.38e-13 67.4
MS.gene54981.t1 AT1G79580 25.478 157 113 3 2 154 9 165 1.38e-13 67.4
MS.gene54981.t1 AT1G79580 25.478 157 113 3 2 154 9 165 1.38e-13 67.4
MS.gene54981.t1 AT1G79580 25.478 157 113 3 2 154 9 165 1.38e-13 67.4
MS.gene54981.t1 AT1G34180 30.159 126 84 3 13 135 19 143 2.22e-13 66.6
MS.gene54981.t1 AT5G46590 27.338 139 97 3 10 145 6 143 3.56e-13 65.5
MS.gene54981.t1 AT5G66300 31.538 130 84 4 8 133 10 138 3.71e-13 65.5
MS.gene54981.t1 AT5G46590 27.338 139 97 3 10 145 6 143 4.10e-13 65.5
MS.gene54981.t1 AT4G35580 32.283 127 82 3 10 133 9 134 4.49e-13 65.9
MS.gene54981.t1 AT5G14000 25.899 139 93 5 3 136 8 141 4.96e-13 63.2
MS.gene54981.t1 AT5G14000 24.204 157 109 5 3 154 8 159 7.14e-13 63.9
MS.gene54981.t1 AT4G35580 32.283 127 82 3 10 133 9 134 7.34e-13 65.5
MS.gene54981.t1 AT4G35580 32.283 127 82 3 10 133 9 134 7.41e-13 65.5
MS.gene54981.t1 AT2G18060 30.000 130 86 4 8 133 7 135 1.60e-12 64.3
MS.gene54981.t1 AT2G18060 30.000 130 86 4 8 133 7 135 1.60e-12 64.3
MS.gene54981.t1 AT5G24590 29.139 151 101 4 10 154 13 163 1.64e-12 64.3
MS.gene54981.t1 AT5G64060 28.244 131 90 3 6 133 2 131 4.67e-12 62.8
MS.gene54981.t1 AT5G04395 29.221 154 91 6 1 137 19 171 4.93e-12 61.2
MS.gene54981.t1 AT1G71930 29.008 131 88 4 7 133 6 135 5.26e-12 62.4
MS.gene54981.t1 AT1G71930 29.008 131 88 4 7 133 6 135 5.26e-12 62.4
MS.gene54981.t1 AT1G32870 29.457 129 89 2 10 137 10 137 6.13e-12 62.8
MS.gene54981.t1 AT1G32870 29.457 129 89 2 10 137 10 137 6.32e-12 62.8
MS.gene54981.t1 AT1G32870 29.457 129 89 2 10 137 46 173 6.99e-12 62.4
MS.gene54981.t1 AT5G64530 30.000 130 77 5 8 135 1 118 8.58e-12 60.1
MS.gene54981.t1 AT1G56010 27.941 136 91 4 2 133 11 143 1.37e-11 61.2
MS.gene54981.t1 AT5G64530 30.000 130 77 5 8 135 1 118 2.77e-11 59.3
MS.gene54981.t1 AT3G44290 27.692 130 89 4 13 139 17 144 5.53e-11 58.9
MS.gene54981.t1 AT5G09330 30.534 131 87 4 6 133 2 131 6.62e-11 59.7
MS.gene54981.t1 AT5G09330 30.534 131 87 4 6 133 2 131 6.62e-11 59.7
MS.gene54981.t1 AT5G09330 30.534 131 87 4 6 133 2 131 6.62e-11 59.7
MS.gene54981.t1 AT5G09330 30.534 131 87 4 6 133 2 131 6.62e-11 59.7
MS.gene54981.t1 AT5G09330 30.534 131 87 4 6 133 2 131 6.62e-11 59.7
MS.gene54981.t1 AT5G50820 29.630 135 85 3 2 133 9 136 8.19e-11 58.2

Find 39 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCTACCTGCTGGATTC+AGG 0.237662 7.2:+23899645 MS.gene54981:CDS
TGCAGAAAATAGATACTCTT+TGG 0.273533 7.2:+23900074 MS.gene54981:intron
GAACCGTAGGTTCGAGAATA+TGG 0.296257 7.2:+23900128 MS.gene54981:CDS
TCAAATTCTGACATGACATT+TGG 0.343033 7.2:-23899734 None:intergenic
ATTGTATTCCTTACCCTAGT+TGG 0.360957 7.2:-23900330 None:intergenic
GAAAGAACAGATATGTTTAC+TGG 0.378161 7.2:+23900235 MS.gene54981:CDS
ATAGATACTCTTTGGAGAAT+AGG 0.394512 7.2:+23900082 MS.gene54981:CDS
AGTACTATTTCTTTGATCTC+AGG 0.411387 7.2:+23900106 MS.gene54981:CDS
AAGATCCGATAGGCAGCTAT+AGG 0.467878 7.2:-23900501 None:intergenic
ACAGATATGTTTACTGGATA+GGG 0.475339 7.2:+23900241 MS.gene54981:CDS
TCTGACATGACATTTGGAAA+AGG 0.488494 7.2:-23899728 None:intergenic
ACTGAGCCATGGAGGCTGCC+AGG 0.492712 7.2:+23899767 MS.gene54981:CDS
AACAGATATGTTTACTGGAT+AGG 0.498598 7.2:+23900240 MS.gene54981:CDS
TCAACAAGTACGCGATCGGT+TGG 0.506848 7.2:-23899674 None:intergenic
AAACCTCCTGGCAGCCTCCA+TGG 0.506870 7.2:-23899773 None:intergenic
ATCGGATCTTTAAGATATGA+AGG 0.521757 7.2:+23900514 MS.gene54981:CDS
GCTGAGGTTGATCTACCTGC+TGG 0.528162 7.2:+23899638 MS.gene54981:CDS
AATATGGATGCAAGAAGAGC+TGG 0.531324 7.2:+23900144 MS.gene54981:CDS
ATATATTTCAAACTGAGCCA+TGG 0.550284 7.2:+23899756 MS.gene54981:CDS
ACATGACATTTGGAAAAGGT+TGG 0.561346 7.2:-23899724 None:intergenic
CATCCATATTCTCGAACCTA+CGG 0.563017 7.2:-23900131 None:intergenic
GTAGAATTTCTGATCCAACT+AGG 0.564430 7.2:+23900316 MS.gene54981:CDS
GATGCAAGAAGAGCTGGAAA+TGG 0.566075 7.2:+23900150 MS.gene54981:CDS
ATCAAGCTCTGATGACAAGA+TGG 0.571832 7.2:+23900271 MS.gene54981:CDS
TCTTTGATCTCAGGAACCGT+AGG 0.573721 7.2:+23900115 MS.gene54981:CDS
GAAGAGCTGGAAATGGTGAA+TGG 0.577138 7.2:+23900157 MS.gene54981:CDS
GGATCAAACCTGAATCCAGC+AGG 0.578674 7.2:-23899653 None:intergenic
TAGAATTTCTGATCCAACTA+GGG 0.584601 7.2:+23900317 MS.gene54981:CDS
GCGAATAGTTCAAAGGAATG+AGG 0.587265 7.2:+23900179 MS.gene54981:CDS
TATGTTTACTGGATAGGGCA+AGG 0.598697 7.2:+23900246 MS.gene54981:CDS
GTGAATGGCGAATAGTTCAA+AGG 0.604587 7.2:+23900172 MS.gene54981:CDS
GGTCACCTATAGCTGCCTAT+CGG 0.611918 7.2:+23900496 MS.gene54981:CDS
GCACTCAACAAGTACGCGAT+CGG 0.627245 7.2:-23899678 None:intergenic
TCATATCTTAAAGATCCGAT+AGG 0.653307 7.2:-23900511 None:intergenic
AAGCTCTGATGACAAGATGG+TGG 0.668891 7.2:+23900274 MS.gene54981:CDS
TATTTCAAACTGAGCCATGG+AGG 0.675314 7.2:+23899759 MS.gene54981:CDS
CATGGCTGTAGCTAATGCTG+AGG 0.680042 7.2:+23899622 None:intergenic
GAGCCATGGAGGCTGCCAGG+AGG 0.693460 7.2:+23899770 MS.gene54981:CDS
TGGATGCATGAATTTGTCAT+CGG 0.708626 7.2:+23900294 MS.gene54981:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTGATTTATTCATTT+TGG + chr7.2:23900022-23900041 MS.gene54981:intron 15.0%
!!! CAAATTGATTTATTCATTTT+GGG + chr7.2:23900023-23900042 MS.gene54981:intron 15.0%
!! TCATAAAGAAAGAGAATAAA+GGG - chr7.2:23899839-23899858 None:intergenic 20.0%
!! TTGAACTCAAATTAAATGTA+GGG + chr7.2:23900474-23900493 MS.gene54981:intron 20.0%
!! TTTATTGATAAAACACACAA+TGG - chr7.2:23899862-23899881 None:intergenic 20.0%
!! TTTGAACTCAAATTAAATGT+AGG + chr7.2:23900473-23900492 MS.gene54981:intron 20.0%
!!! AAAAATTTTGATAGTGATAG+TGG - chr7.2:23900361-23900380 None:intergenic 20.0%
!!! CTTATATGATGTTTTTATGT+GGG + chr7.2:23899991-23900010 MS.gene54981:intron 20.0%
!!! TATCACTATCAAAATTTTTG+AGG + chr7.2:23900362-23900381 MS.gene54981:intron 20.0%
! AACATCATATAAGCATTTCA+TGG - chr7.2:23899984-23900003 None:intergenic 25.0%
! GTCATAAAGAAAGAGAATAA+AGG - chr7.2:23899840-23899859 None:intergenic 25.0%
! TGAACTCAAATTAAATGTAG+GGG + chr7.2:23900475-23900494 MS.gene54981:intron 25.0%
!! ATTTTCTTAGTGTTCTTTGA+TGG + chr7.2:23899888-23899907 MS.gene54981:intron 25.0%
!!! GCTTATATGATGTTTTTATG+TGG + chr7.2:23899990-23900009 MS.gene54981:intron 25.0%
AACAGATATGTTTACTGGAT+AGG + chr7.2:23900240-23900259 MS.gene54981:CDS 30.0%
ACAGATATGTTTACTGGATA+GGG + chr7.2:23900241-23900260 MS.gene54981:CDS 30.0%
ATATATTTCAAACTGAGCCA+TGG + chr7.2:23899756-23899775 MS.gene54981:CDS 30.0%
GAAAGAACAGATATGTTTAC+TGG + chr7.2:23900235-23900254 MS.gene54981:CDS 30.0%
TAGAATTTCTGATCCAACTA+GGG + chr7.2:23900317-23900336 MS.gene54981:CDS 30.0%
TCAAATTCTGACATGACATT+TGG - chr7.2:23899737-23899756 None:intergenic 30.0%
TCATATCTTAAAGATCCGAT+AGG - chr7.2:23900514-23900533 None:intergenic 30.0%
TGCAGAAAATAGATACTCTT+TGG + chr7.2:23900074-23900093 MS.gene54981:intron 30.0%
! AGTACTATTTCTTTGATCTC+AGG + chr7.2:23900106-23900125 MS.gene54981:CDS 30.0%
! ATAGATACTCTTTGGAGAAT+AGG + chr7.2:23900082-23900101 MS.gene54981:CDS 30.0%
ACATGACATTTGGAAAAGGT+TGG - chr7.2:23899727-23899746 None:intergenic 35.0%
ATTGTATTCCTTACCCTAGT+TGG - chr7.2:23900333-23900352 None:intergenic 35.0%
GTAGAATTTCTGATCCAACT+AGG + chr7.2:23900316-23900335 MS.gene54981:CDS 35.0%
TCTGACATGACATTTGGAAA+AGG - chr7.2:23899731-23899750 None:intergenic 35.0%
TGGATGCATGAATTTGTCAT+CGG + chr7.2:23900294-23900313 MS.gene54981:CDS 35.0%
TTGTGTCTTAGACATGCAAT+TGG + chr7.2:23899937-23899956 MS.gene54981:intron 35.0%
! GGTTGTATATTTTCTTCGTC+AGG - chr7.2:23899706-23899725 None:intergenic 35.0%
AATATGGATGCAAGAAGAGC+TGG + chr7.2:23900144-23900163 MS.gene54981:CDS 40.0%
CATCCATATTCTCGAACCTA+CGG - chr7.2:23900134-23900153 None:intergenic 40.0%
GCGAATAGTTCAAAGGAATG+AGG + chr7.2:23900179-23900198 MS.gene54981:CDS 40.0%
GTCTTAGACATGCAATTGGA+GGG + chr7.2:23899941-23899960 MS.gene54981:intron 40.0%
GTGAATGGCGAATAGTTCAA+AGG + chr7.2:23900172-23900191 MS.gene54981:CDS 40.0%
TATGTTTACTGGATAGGGCA+AGG + chr7.2:23900246-23900265 MS.gene54981:CDS 40.0%
TATTTCAAACTGAGCCATGG+AGG + chr7.2:23899759-23899778 MS.gene54981:CDS 40.0%
TCTTAGACATGCAATTGGAG+GGG + chr7.2:23899942-23899961 MS.gene54981:intron 40.0%
TGTCTTAGACATGCAATTGG+AGG + chr7.2:23899940-23899959 MS.gene54981:intron 40.0%
TTTCTGATCCAACTAGGGTA+AGG + chr7.2:23900322-23900341 MS.gene54981:intron 40.0%
! ATCAAGCTCTGATGACAAGA+TGG + chr7.2:23900271-23900290 MS.gene54981:CDS 40.0%
! GTTTTCTTTCACAAACCTCC+TGG - chr7.2:23899788-23899807 None:intergenic 40.0%
AAGATCCGATAGGCAGCTAT+AGG - chr7.2:23900504-23900523 None:intergenic 45.0%
GAACCGTAGGTTCGAGAATA+TGG + chr7.2:23900128-23900147 MS.gene54981:CDS 45.0%
GAAGAGCTGGAAATGGTGAA+TGG + chr7.2:23900157-23900176 MS.gene54981:CDS 45.0%
GATGCAAGAAGAGCTGGAAA+TGG + chr7.2:23900150-23900169 MS.gene54981:CDS 45.0%
TCTTTGATCTCAGGAACCGT+AGG + chr7.2:23900115-23900134 MS.gene54981:CDS 45.0%
TTGATCTACCTGCTGGATTC+AGG + chr7.2:23899645-23899664 MS.gene54981:CDS 45.0%
! AAGCTCTGATGACAAGATGG+TGG + chr7.2:23900274-23900293 MS.gene54981:CDS 45.0%
GCACTCAACAAGTACGCGAT+CGG - chr7.2:23899681-23899700 None:intergenic 50.0%
GGATCAAACCTGAATCCAGC+AGG - chr7.2:23899656-23899675 None:intergenic 50.0%
GGTCACCTATAGCTGCCTAT+CGG + chr7.2:23900496-23900515 MS.gene54981:CDS 50.0%
TAGACATGCAATTGGAGGGG+AGG + chr7.2:23899945-23899964 MS.gene54981:intron 50.0%
TCAACAAGTACGCGATCGGT+TGG - chr7.2:23899677-23899696 None:intergenic 50.0%
! GCTGAGGTTGATCTACCTGC+TGG + chr7.2:23899638-23899657 MS.gene54981:CDS 55.0%
AAACCTCCTGGCAGCCTCCA+TGG - chr7.2:23899776-23899795 None:intergenic 60.0%
ACTGAGCCATGGAGGCTGCC+AGG + chr7.2:23899767-23899786 MS.gene54981:CDS 65.0%
GAGCCATGGAGGCTGCCAGG+AGG + chr7.2:23899770-23899789 MS.gene54981:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 23899623 23900533 23899623 ID=MS.gene54981
chr7.2 mRNA 23899623 23900533 23899623 ID=MS.gene54981.t1;Parent=MS.gene54981
chr7.2 exon 23899623 23899791 23899623 ID=MS.gene54981.t1.exon1;Parent=MS.gene54981.t1
chr7.2 CDS 23899623 23899791 23899623 ID=cds.MS.gene54981.t1;Parent=MS.gene54981.t1
chr7.2 exon 23900079 23900338 23900079 ID=MS.gene54981.t1.exon2;Parent=MS.gene54981.t1
chr7.2 CDS 23900079 23900338 23900079 ID=cds.MS.gene54981.t1;Parent=MS.gene54981.t1
chr7.2 exon 23900495 23900533 23900495 ID=MS.gene54981.t1.exon3;Parent=MS.gene54981.t1
chr7.2 CDS 23900495 23900533 23900495 ID=cds.MS.gene54981.t1;Parent=MS.gene54981.t1
Gene Sequence

>MS.gene54981

ATGGCTGTAGCTAATGCTGAGGTTGATCTACCTGCTGGATTCAGGTTTGATCCAACCGATCGCGTACTTGTTGAGTGCTACCTGACGAAGAAAATATACAACCAACCTTTTCCAAATGTCATGTCAGAATTTGATATATTTCAAACTGAGCCATGGAGGCTGCCAGGAGGTTTGTGAAAGAAAACAAAAGTTATTTTTCTAATGTTTTTTTAGCCCTTTATTCTCTTTCTTTATGACCATTGTGTGTTTTATCAATAAAAATCAAATTTTCTTAGTGTTCTTTGATGGATTTTCATTGATCTTGAGAATGAACGTTGTGTCTTAGACATGCAATTGGAGGGGAGGAGACTTAAAAATTCCATGAAATGCTTATATGATGTTTTTATGTGGGTAATTAACACAAATTGATTTATTCATTTTGGGTCATTTCAATTTGTTATTTTTTTTTTGTTGCAGAAAATAGATACTCTTTGGAGAATAGGAAGTACTATTTCTTTGATCTCAGGAACCGTAGGTTCGAGAATATGGATGCAAGAAGAGCTGGAAATGGTGAATGGCGAATAGTTCAAAGGAATGAGGAGTTTGCTCATTCAAACAATCAACTGATTGTGAGAAAGAACAGATATGTTTACTGGATAGGGCAAGGAAATCAAGCTCTGATGACAAGATGGTGGATGCATGAATTTGTCATCGGTAGAATTTCTGATCCAACTAGGGTAAGGAATACAATATAGACCACTATCACTATCAAAATTTTTGAGGACTTTTTTTAAAGTAATAATGTTTTTTTGTATTTTCAGCTGAAAATCATGCTAGTTTTATGTAAACTTGTTTCATATAGTCACTGAATTTTGAACTCAAATTAAATGTAGGGGTCACCTATAGCTGCCTATCGGATCTTTAAGATATGA
Protein sequence

>MS.gene54981.t1

MAVANAEVDLPAGFRFDPTDRVLVECYLTKKIYNQPFPNVMSEFDIFQTEPWRLPGENRYSLENRKYYFFDLRNRRFENMDARRAGNGEWRIVQRNEEFAHSNNQLIVRKNRYVYWIGQGNQALMTRWWMHEFVIGRISDPTRGSPIAAYRIFKI