AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55105

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55105.t1 MTR_2g038040 85.116 215 23 1 1 206 1 215 1.17e-131 370
MS.gene55105.t1 MTR_8g064700 32.121 165 104 2 42 206 243 399 3.54e-22 93.2
MS.gene55105.t1 MTR_1g112680 29.224 219 128 6 12 206 280 495 4.83e-19 84.7
MS.gene55105.t1 MTR_2g084280 31.944 144 78 3 42 183 132 257 2.85e-17 78.6
MS.gene55105.t1 MTR_3g030700 36.709 158 84 6 42 195 195 340 2.28e-16 76.6
MS.gene55105.t1 MTR_3g498695 31.875 160 104 3 39 197 294 449 7.01e-16 75.5
MS.gene55105.t1 MTR_3g498695 31.875 160 104 3 39 197 294 449 7.29e-16 75.5
MS.gene55105.t1 MTR_4g057270 32.051 156 93 3 42 196 148 291 8.51e-16 74.7
MS.gene55105.t1 MTR_2g081040 33.129 163 92 5 42 197 176 328 1.61e-15 74.3
MS.gene55105.t1 MTR_3g104100 32.911 158 95 4 42 195 194 344 7.70e-15 72.4
MS.gene55105.t1 MTR_7g083900 32.500 160 103 3 40 197 283 439 1.01e-14 72.4
MS.gene55105.t1 MTR_7g083900 32.500 160 103 3 40 197 283 439 1.05e-14 72.4
MS.gene55105.t1 MTR_4g092700 26.263 198 124 5 2 197 122 299 5.68e-14 69.7
MS.gene55105.t1 MTR_7g117670 58.182 55 23 0 44 98 403 457 1.60e-13 68.9
MS.gene55105.t1 MTR_8g027495 55.932 59 26 0 44 102 459 517 1.94e-13 68.6
MS.gene55105.t1 MTR_7g096350 49.367 79 29 3 44 122 356 423 6.11e-13 67.0
MS.gene55105.t1 MTR_8g067280 51.667 60 29 0 44 103 463 522 1.14e-12 66.6
MS.gene55105.t1 MTR_5g030430 50.000 70 32 1 44 110 494 563 4.48e-12 64.7
MS.gene55105.t1 MTR_8g024770 50.000 62 24 1 44 105 280 334 6.58e-12 63.9
MS.gene55105.t1 MTR_2g104560 23.529 153 102 2 44 196 55 192 1.13e-11 62.0
MS.gene55105.t1 MTR_8g024790 44.286 70 28 1 44 102 292 361 1.90e-11 62.8
MS.gene55105.t1 MTR_1g072320 47.368 57 30 0 32 88 459 515 2.71e-11 62.4
MS.gene55105.t1 MTR_5g030770 34.395 157 81 4 39 195 152 286 4.38e-11 61.2
MS.gene55105.t1 MTR_2g010450 49.091 55 28 0 44 98 178 232 5.37e-11 61.2
MS.gene55105.t1 MTR_4g091910 35.000 140 63 5 41 155 45 181 6.08e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55105.t1 AT5G57150 63.402 194 66 4 13 206 25 213 7.75e-73 220
MS.gene55105.t1 AT5G57150 64.211 190 63 4 17 206 30 214 8.66e-73 220
MS.gene55105.t1 AT5G57150 64.211 190 63 4 17 206 30 214 8.91e-73 220
MS.gene55105.t1 AT5G57150 63.402 194 66 4 13 206 25 213 9.98e-73 221
MS.gene55105.t1 AT5G57150 64.211 190 63 4 17 206 30 214 1.15e-71 218
MS.gene55105.t1 AT4G29930 48.899 227 93 3 1 206 1 225 1.09e-64 200
MS.gene55105.t1 AT4G29930 48.899 227 93 3 1 206 1 225 1.51e-64 200
MS.gene55105.t1 AT4G29930 48.899 227 93 3 1 206 1 225 1.51e-64 200
MS.gene55105.t1 AT4G29930 48.848 217 82 3 1 206 1 199 4.13e-62 193
MS.gene55105.t1 AT4G29930 48.387 217 80 3 1 206 1 196 1.83e-61 191
MS.gene55105.t1 AT4G29930 48.387 217 80 3 1 206 1 196 2.60e-61 191
MS.gene55105.t1 AT4G29930 46.821 173 73 2 1 154 1 173 2.29e-42 141
MS.gene55105.t1 AT2G28160 32.278 158 91 4 42 196 130 274 4.74e-18 80.9
MS.gene55105.t1 AT2G28160 32.278 158 91 4 42 196 130 274 4.94e-18 80.9
MS.gene55105.t1 AT3G26744 31.646 158 105 1 40 197 304 458 3.49e-15 73.6
MS.gene55105.t1 AT3G26744 31.646 158 105 1 40 197 304 458 3.49e-15 73.6
MS.gene55105.t1 AT3G26744 31.646 158 105 1 40 197 304 458 3.49e-15 73.6
MS.gene55105.t1 AT3G26744 31.646 158 105 1 40 197 304 458 3.77e-15 73.6
MS.gene55105.t1 AT1G01260 48.101 79 37 1 44 122 434 508 4.38e-15 73.6
MS.gene55105.t1 AT1G01260 48.101 79 37 1 44 122 434 508 4.38e-15 73.6
MS.gene55105.t1 AT1G01260 48.101 79 37 1 44 122 434 508 4.38e-15 73.6
MS.gene55105.t1 AT2G16910 27.624 181 108 4 42 206 313 486 3.42e-14 70.9
MS.gene55105.t1 AT1G12860 32.500 160 97 3 40 197 264 414 4.58e-14 70.5
MS.gene55105.t1 AT1G12860 32.500 160 97 3 40 197 264 414 5.03e-14 70.5
MS.gene55105.t1 AT2G46510 58.182 55 23 0 44 98 396 450 5.80e-14 70.1
MS.gene55105.t1 AT4G16430 47.368 76 39 1 44 118 321 396 1.75e-13 68.6
MS.gene55105.t1 AT5G46760 34.416 154 84 7 44 193 416 556 5.27e-13 67.4
MS.gene55105.t1 AT1G32640 55.000 60 25 1 44 103 453 510 7.60e-13 67.0
MS.gene55105.t1 AT1G63650 28.994 169 113 3 41 203 403 570 1.63e-12 65.9
MS.gene55105.t1 AT1G63650 28.994 169 113 3 41 203 403 570 1.63e-12 65.9
MS.gene55105.t1 AT1G63650 28.994 169 113 3 41 203 403 570 1.63e-12 65.9
MS.gene55105.t1 AT4G37850 29.268 164 97 5 44 203 153 301 5.16e-12 63.9
MS.gene55105.t1 AT4G37850 29.268 164 97 5 44 203 153 301 5.16e-12 63.9
MS.gene55105.t1 AT4G17880 50.000 60 30 0 44 103 417 476 7.13e-12 64.3
MS.gene55105.t1 AT5G46830 29.605 152 88 3 44 193 344 478 7.90e-11 60.8

Find 45 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAATGGAACTTGAATT+TGG 0.174122 2.2:+49511678 MS.gene55105:CDS
CTGATTTGTTCTCTTCTTCT+TGG 0.191764 2.2:-49511763 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2.2:+49511602 MS.gene55105:CDS
TAGTTTGGATTAATATTATT+AGG 0.309618 2.2:-49511705 None:intergenic
GGATTGGATGAGGCTTTAAC+AGG 0.339402 2.2:+49511068 MS.gene55105:CDS
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2.2:-49511215 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2.2:-49511214 None:intergenic
GCCTGAGAAAGAGGATATAT+TGG 0.364460 2.2:-49512971 None:intergenic
TTGTGGTTGCAGTTGGGGAT+TGG 0.368783 2.2:+49511052 MS.gene55105:intron
TCTTGATCAAAATCATAGTT+TGG 0.369624 2.2:-49511720 None:intergenic
TTTACCTCAAGGACTTCAAT+TGG 0.374167 2.2:-49511816 None:intergenic
GGTTATTCAAGCTGAGATAA+TGG 0.376023 2.2:+49511665 MS.gene55105:CDS
TTGCAGTTGGGGATTGGATG+AGG 0.422701 2.2:+49511058 MS.gene55105:intron
GTGCTGAGTACAACCCTTAC+CGG 0.425637 2.2:+49510932 MS.gene55105:CDS
ACATTGTCTCTGAGAGGAAC+AGG 0.441534 2.2:+49511147 MS.gene55105:CDS
TACATGTTGGTCTCCCGGTA+AGG 0.449399 2.2:-49510946 None:intergenic
AGATAATGGAACTTGAATTT+GGG 0.453081 2.2:+49511679 MS.gene55105:CDS
TGAGCATGACATGTAACAAA+AGG 0.468788 2.2:+49512887 MS.gene55105:CDS
GCGGATGGTGCAGCATCATC+AGG 0.473222 2.2:+49511110 MS.gene55105:CDS
GCCAATATATCCTCTTTCTC+AGG 0.477840 2.2:+49512970 MS.gene55105:CDS
ACACATGGAAGAGAATATAA+TGG 0.483631 2.2:+49512861 MS.gene55105:CDS
CGAAAGCCTGCCTGAGAAAG+AGG 0.487286 2.2:-49512980 None:intergenic
TTACCTACATGTTGGTCTCC+CGG 0.526666 2.2:-49510951 None:intergenic
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2.2:+49511739 MS.gene55105:CDS
ACATGTTGGTCTCCCGGTAA+GGG 0.528733 2.2:-49510945 None:intergenic
ATATATCCTCTTTCTCAGGC+AGG 0.530610 2.2:+49512974 MS.gene55105:CDS
TGATGATGCTGCACCATCCG+CGG 0.544506 2.2:-49511108 None:intergenic
GAGCATGACATGTAACAAAA+GGG 0.547151 2.2:+49512888 MS.gene55105:CDS
CTTTCCAATTGAAGTCCTTG+AGG 0.548914 2.2:+49511812 MS.gene55105:CDS
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2.2:-49511747 None:intergenic
CTCAGCACCAATGTTCTCCA+TGG 0.577641 2.2:-49510917 None:intergenic
TGCTGAGTACAACCCTTACC+GGG 0.581537 2.2:+49510933 MS.gene55105:CDS
TTCGAAGACAGTCTTCATTG+AGG 0.583420 2.2:+49512999 MS.gene55105:CDS
GCAGCTTAGGGTTACACACA+TGG 0.606797 2.2:+49512846 MS.gene55105:intron
TTAACAACCATGGAGAACAT+TGG 0.610292 2.2:+49510910 None:intergenic
TAACAAAAGGGCAGACACAA+TGG 0.615640 2.2:+49512900 MS.gene55105:CDS
TATGATTCAAGCTCCGCGGA+TGG 0.621734 2.2:+49511095 MS.gene55105:CDS
GATTGGATGAGGCTTTAACA+GGG 0.623983 2.2:+49511069 MS.gene55105:CDS
GGACCACTGCTCTAAGTGCA+AGG 0.633774 2.2:-49511193 None:intergenic
AGTCTTGCATGAGCAAGAGA+AGG 0.639595 2.2:+49511644 MS.gene55105:CDS
CTAAGAACATTGTCTCTGAG+AGG 0.650410 2.2:+49511141 MS.gene55105:CDS
ACTCCTTGCACTTAGAGCAG+TGG 0.656584 2.2:+49511190 MS.gene55105:CDS
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2.2:+49511208 MS.gene55105:CDS
TTGTCTCTGAGAGGAACAGG+AGG 0.687982 2.2:+49511150 MS.gene55105:CDS
GTATTATGATTCAAGCTCCG+CGG 0.725456 2.2:+49511091 MS.gene55105:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATCAATATTTATAT+TGG - chr2.2:49512405-49512424 None:intergenic 10.0%
!! TAGTGAAAATTATTAATTAA+TGG - chr2.2:49511257-49511276 None:intergenic 10.0%
!!! ATATATTAGCTTTATTTTTT+AGG + chr2.2:49512604-49512623 MS.gene55105:intron 10.0%
!!! TTGATTTTTTATTATTTGTT+TGG + chr2.2:49511303-49511322 MS.gene55105:intron 10.0%
!!! TTTTAAAAGTAATTATAAGA+TGG - chr2.2:49512236-49512255 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAAGTTG+GGG - chr2.2:49511929-49511948 None:intergenic 10.0%
!! ACTCTTAAAGTATAAAAATT+AGG - chr2.2:49512118-49512137 None:intergenic 15.0%
!! AGATAAAAAAAATAGATAGT+GGG + chr2.2:49512492-49512511 MS.gene55105:intron 15.0%
!! CTCTTAAAGTATAAAAATTA+GGG - chr2.2:49512117-49512136 None:intergenic 15.0%
!! TAGTTTGGATTAATATTATT+AGG - chr2.2:49511708-49511727 None:intergenic 15.0%
!!! AAAGATCTTTTGAAATTTAA+TGG - chr2.2:49512304-49512323 None:intergenic 15.0%
!!! ATCAATTTCTTTTTAATGAT+GGG + chr2.2:49511557-49511576 MS.gene55105:intron 15.0%
!!! CTAATATATTTTCTCTATTA+GGG - chr2.2:49512593-49512612 None:intergenic 15.0%
!!! TGTGTAATTAATTTGATATA+TGG + chr2.2:49512817-49512836 MS.gene55105:intron 15.0%
!!! TTTAATCTATATTTGTTGTT+GGG - chr2.2:49512679-49512698 None:intergenic 15.0%
!! ATGCTAAAAAAATAAATGTG+GGG + chr2.2:49512738-49512757 MS.gene55105:intron 20.0%
!! CAAATAATTATACCATATGA+TGG - chr2.2:49511519-49511538 None:intergenic 20.0%
!! CATCATATGGTATAATTATT+TGG + chr2.2:49511517-49511536 MS.gene55105:intron 20.0%
!! GAGATAAAAAAAATAGATAG+TGG + chr2.2:49512491-49512510 MS.gene55105:intron 20.0%
!! GATGCTAAAAAAATAAATGT+GGG + chr2.2:49512737-49512756 MS.gene55105:intron 20.0%
!! GGTTGTTAAAAAAAAAAAAG+TGG - chr2.2:49512652-49512671 None:intergenic 20.0%
!! TAATTATAAGATGGTCATTA+CGG - chr2.2:49512227-49512246 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG + chr2.2:49512736-49512755 MS.gene55105:intron 20.0%
!! TTAAAAAGAAATTGATGTCA+TGG - chr2.2:49511553-49511572 None:intergenic 20.0%
!! TTAATTAAGATATATGGTTG+TGG + chr2.2:49511035-49511054 MS.gene55105:intron 20.0%
!! TTATAAATTGGTTATAAGCA+TGG - chr2.2:49512527-49512546 None:intergenic 20.0%
!!! AATTTTCACTACTCAATTTT+TGG + chr2.2:49511266-49511285 MS.gene55105:intron 20.0%
!!! ATTTTCACTACTCAATTTTT+GGG + chr2.2:49511267-49511286 MS.gene55105:intron 20.0%
!!! CATCAATTTCTTTTTAATGA+TGG + chr2.2:49511556-49511575 MS.gene55105:intron 20.0%
!!! CTTTAATCTATATTTGTTGT+TGG - chr2.2:49512680-49512699 None:intergenic 20.0%
!!! GCTAATATATTTTCTCTATT+AGG - chr2.2:49512594-49512613 None:intergenic 20.0%
!!! TGAATCTAAGATTAAGTTTA+TGG - chr2.2:49512142-49512161 None:intergenic 20.0%
!!! TTAATCTATATTTGTTGTTG+GGG - chr2.2:49512678-49512697 None:intergenic 20.0%
!!! TTTTTTAAACATGTTGTTAG+AGG + chr2.2:49511455-49511474 MS.gene55105:intron 20.0%
! AGATTAAAGAAGAAATTGCA+AGG + chr2.2:49512691-49512710 MS.gene55105:intron 25.0%
! AGTACGAAAGTAAATGAATT+TGG + chr2.2:49511336-49511355 MS.gene55105:intron 25.0%
! CAAAAATAAGACATTGTATG+AGG + chr2.2:49512363-49512382 MS.gene55105:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG + chr2.2:49511602-49511621 MS.gene55105:CDS 25.0%
! TAAGGTGGTGATTTATAAAT+TGG - chr2.2:49512539-49512558 None:intergenic 25.0%
! TATAAATCACCACCTTAATA+AGG + chr2.2:49512542-49512561 MS.gene55105:intron 25.0%
! TCTTGATCAAAATCATAGTT+TGG - chr2.2:49511723-49511742 None:intergenic 25.0%
!! GTAAACATCACAAATTTTAG+TGG + chr2.2:49511230-49511249 MS.gene55105:intron 25.0%
!! TATATTGGAAATTTTTGCAC+AGG - chr2.2:49512390-49512409 None:intergenic 25.0%
!!! AATTTCTTTTTAATGATGGG+TGG + chr2.2:49511560-49511579 MS.gene55105:intron 25.0%
!!! AGATAATGGAACTTGAATTT+GGG + chr2.2:49511679-49511698 MS.gene55105:CDS 25.0%
!!! TAATCTATATTTGTTGTTGG+GGG - chr2.2:49512677-49512696 None:intergenic 25.0%
AAAGTGGATAAAGTCTGATT+TGG - chr2.2:49512636-49512655 None:intergenic 30.0%
ACACATGGAAGAGAATATAA+TGG + chr2.2:49512861-49512880 MS.gene55105:CDS 30.0%
ATGTTTACCTTGCTAATGTT+TGG - chr2.2:49511218-49511237 None:intergenic 30.0%
GGAAAATTTCAACCATCATA+TGG + chr2.2:49511504-49511523 MS.gene55105:intron 30.0%
TCACTTTGATTCAAGTATGA+AGG + chr2.2:49510988-49511007 MS.gene55105:intron 30.0%
TGATATTGTTACCTACATGT+TGG - chr2.2:49510962-49510981 None:intergenic 30.0%
TGTTTACCTTGCTAATGTTT+GGG - chr2.2:49511217-49511236 None:intergenic 30.0%
TTGATGTCTTTGACATCTAT+TGG + chr2.2:49511483-49511502 MS.gene55105:intron 30.0%
! TAATTGAAGCTTTATCCATC+TGG - chr2.2:49511599-49511618 None:intergenic 30.0%
!! GAGATAATGGAACTTGAATT+TGG + chr2.2:49511678-49511697 MS.gene55105:CDS 30.0%
AAAATAAATGTGGGGTGTGA+TGG + chr2.2:49512746-49512765 MS.gene55105:intron 35.0%
AATGGTAGACCTTATTAAGG+TGG - chr2.2:49512554-49512573 None:intergenic 35.0%
GAGCATGACATGTAACAAAA+GGG + chr2.2:49512888-49512907 MS.gene55105:CDS 35.0%
GCATCAATAATACAAGAGAG+AGG - chr2.2:49512722-49512741 None:intergenic 35.0%
GGTTATTCAAGCTGAGATAA+TGG + chr2.2:49511665-49511684 MS.gene55105:CDS 35.0%
TGAGCATGACATGTAACAAA+AGG + chr2.2:49512887-49512906 MS.gene55105:CDS 35.0%
TTGAAGTCCTTGAGGTAAAT+TGG + chr2.2:49511820-49511839 MS.gene55105:intron 35.0%
TTTACCTCAAGGACTTCAAT+TGG - chr2.2:49511819-49511838 None:intergenic 35.0%
!! CTGATTTGTTCTCTTCTTCT+TGG - chr2.2:49511766-49511785 None:intergenic 35.0%
AGAGATGATGATAGAGACAG+TGG - chr2.2:49511847-49511866 None:intergenic 40.0%
ATATATCCTCTTTCTCAGGC+AGG + chr2.2:49512974-49512993 MS.gene55105:CDS 40.0%
ATATGGTTGAGTGCAGCTTA+GGG + chr2.2:49512834-49512853 MS.gene55105:intron 40.0%
ATATGGTTGTGGTTGCAGTT+GGG + chr2.2:49511046-49511065 MS.gene55105:intron 40.0%
CTAAGAACATTGTCTCTGAG+AGG + chr2.2:49511141-49511160 MS.gene55105:CDS 40.0%
CTTTCCAATTGAAGTCCTTG+AGG + chr2.2:49511812-49511831 MS.gene55105:CDS 40.0%
GAGATGATGATAGAGACAGT+GGG - chr2.2:49511846-49511865 None:intergenic 40.0%
GCCAATATATCCTCTTTCTC+AGG + chr2.2:49512970-49512989 MS.gene55105:CDS 40.0%
GCCTGAGAAAGAGGATATAT+TGG - chr2.2:49512974-49512993 None:intergenic 40.0%
GGCAATGGTAGACCTTATTA+AGG - chr2.2:49512557-49512576 None:intergenic 40.0%
GTATTATGATTCAAGCTCCG+CGG + chr2.2:49511091-49511110 MS.gene55105:CDS 40.0%
TAACAAAAGGGCAGACACAA+TGG + chr2.2:49512900-49512919 MS.gene55105:CDS 40.0%
TATATGGTTGAGTGCAGCTT+AGG + chr2.2:49512833-49512852 MS.gene55105:intron 40.0%
TATATGGTTGTGGTTGCAGT+TGG + chr2.2:49511045-49511064 MS.gene55105:intron 40.0%
! GATTGGATGAGGCTTTAACA+GGG + chr2.2:49511069-49511088 MS.gene55105:CDS 40.0%
! GGTGACTTTCTTTTTCCAGA+TGG + chr2.2:49511581-49511600 MS.gene55105:intron 40.0%
! TTCTCTATTAGGGTACCTGA+TGG - chr2.2:49512583-49512602 None:intergenic 40.0%
!! CTATATTTGTTGTTGGGGGT+TGG - chr2.2:49512673-49512692 None:intergenic 40.0%
AGTCTTGCATGAGCAAGAGA+AGG + chr2.2:49511644-49511663 MS.gene55105:CDS 45.0%
AGTGGTCCCAAACATTAGCA+AGG + chr2.2:49511208-49511227 MS.gene55105:CDS 45.0%
ATCACTGAGCTCACAACTCA+TGG + chr2.2:49511987-49512006 MS.gene55105:intron 45.0%
TATGGTTGTGGTTGCAGTTG+GGG + chr2.2:49511047-49511066 MS.gene55105:intron 45.0%
TTCTTGGACCTTAGCAACAC+AGG - chr2.2:49511750-49511769 None:intergenic 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG + chr2.2:49511739-49511758 MS.gene55105:CDS 45.0%
! ACATTGTCTCTGAGAGGAAC+AGG + chr2.2:49511147-49511166 MS.gene55105:CDS 45.0%
! GGATTGGATGAGGCTTTAAC+AGG + chr2.2:49511068-49511087 MS.gene55105:CDS 45.0%
! TATTAGGGTACCTGATGGTG+TGG - chr2.2:49512578-49512597 None:intergenic 45.0%
! TTACCTACATGTTGGTCTCC+CGG - chr2.2:49510954-49510973 None:intergenic 45.0%
!! ATTAAATTAATTAAGATATA+TGG + chr2.2:49511029-49511048 MS.gene55105:intron 5.0%
!! TAAAAAAAAAAAAAAAAAAG+AGG + chr2.2:49511934-49511953 MS.gene55105:intron 5.0%
!!! TTTTTTTTTTTTTTTAAGTT+GGG - chr2.2:49511930-49511949 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTAAGT+TGG - chr2.2:49511931-49511950 None:intergenic 5.0%
ACTCCTTGCACTTAGAGCAG+TGG + chr2.2:49511190-49511209 MS.gene55105:CDS 50.0%
CAGTGGGCCAATTTACCTCA+AGG - chr2.2:49511830-49511849 None:intergenic 50.0%
GCAGCTTAGGGTTACACACA+TGG + chr2.2:49512846-49512865 MS.gene55105:intron 50.0%
GTGCTGAGTACAACCCTTAC+CGG + chr2.2:49510932-49510951 MS.gene55105:CDS 50.0%
TATGATTCAAGCTCCGCGGA+TGG + chr2.2:49511095-49511114 MS.gene55105:CDS 50.0%
TCTACCATTGCCACACCATC+AGG + chr2.2:49512565-49512584 MS.gene55105:intron 50.0%
TGCTGAGTACAACCCTTACC+GGG + chr2.2:49510933-49510952 MS.gene55105:CDS 50.0%
TTACCGGGAGACCAACATGT+AGG + chr2.2:49510948-49510967 MS.gene55105:intron 50.0%
TTGCAGTTGGGGATTGGATG+AGG + chr2.2:49511058-49511077 MS.gene55105:intron 50.0%
TTGTGGTTGCAGTTGGGGAT+TGG + chr2.2:49511052-49511071 MS.gene55105:intron 50.0%
! ACATGTTGGTCTCCCGGTAA+GGG - chr2.2:49510948-49510967 None:intergenic 50.0%
! TACATGTTGGTCTCCCGGTA+AGG - chr2.2:49510949-49510968 None:intergenic 50.0%
! TTGTCTCTGAGAGGAACAGG+AGG + chr2.2:49511150-49511169 MS.gene55105:CDS 50.0%
CGAAAGCCTGCCTGAGAAAG+AGG - chr2.2:49512983-49513002 None:intergenic 55.0%
! GGACCACTGCTCTAAGTGCA+AGG - chr2.2:49511196-49511215 None:intergenic 55.0%
! GGTACCTGATGGTGTGGCAA+TGG - chr2.2:49512572-49512591 None:intergenic 55.0%
! TGATGATGCTGCACCATCCG+CGG - chr2.2:49511111-49511130 None:intergenic 55.0%
GCGGATGGTGCAGCATCATC+AGG + chr2.2:49511110-49511129 MS.gene55105:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 49510919 49513020 49510919 ID=MS.gene55105
chr2.2 mRNA 49510919 49513020 49510919 ID=MS.gene55105.t1;Parent=MS.gene55105
chr2.2 exon 49510919 49510965 49510919 ID=MS.gene55105.t1.exon1;Parent=MS.gene55105.t1
chr2.2 CDS 49510919 49510965 49510919 ID=cds.MS.gene55105.t1;Parent=MS.gene55105.t1
chr2.2 exon 49511064 49511229 49511064 ID=MS.gene55105.t1.exon2;Parent=MS.gene55105.t1
chr2.2 CDS 49511064 49511229 49511064 ID=cds.MS.gene55105.t1;Parent=MS.gene55105.t1
chr2.2 exon 49511600 49511833 49511600 ID=MS.gene55105.t1.exon3;Parent=MS.gene55105.t1
chr2.2 CDS 49511600 49511833 49511600 ID=cds.MS.gene55105.t1;Parent=MS.gene55105.t1
chr2.2 exon 49512850 49513020 49512850 ID=MS.gene55105.t1.exon4;Parent=MS.gene55105.t1
chr2.2 CDS 49512850 49513020 49512850 ID=cds.MS.gene55105.t1;Parent=MS.gene55105.t1
Gene Sequence

>MS.gene55105

ATGGAGAACATTGGTGCTGAGTACAACCCTTACCGGGAGACCAACATGTAGGTAACAATATCATTTAATTCACTTTGATTCAAGTATGAAGGTACAATTAGTGAAATTAAATTAAATTAATTAAGATATATGGTTGTGGTTGCAGTTGGGGATTGGATGAGGCTTTAACAGGGTATTATGATTCAAGCTCCGCGGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGTCTCTGAGAGGAACAGGAGGAATAAGCTTAATGAAAGACTCCTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGGTAAACATCACAAATTTTAGTGGTCCATTAATTAATAATTTTCACTACTCAATTTTTGGGTGCAATTTTGCTGTTGATTTTTTATTATTTGTTTGGATAAAATATAAGTACGAAAGTAAATGAATTTGGTTCATATTTAGACTATATATACATGTATTGTTTTGCTTATATTTTATTACAGATAGAGTAATTAATATTATGTGACACAGTGAATAAGTAATTTAATTTTTTAAACATGTTGTTAGAGGTTTGATTGATGTCTTTGACATCTATTGGAAAATTTCAACCATCATATGGTATAATTATTTGGAATGATTAGTCCATGACATCAATTTCTTTTTAATGATGGGTGGTGACTTTCTTTTTCCAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATACAAGTCTTGCATGAGCAAGAGAAGGTTATTCAAGCTGAGATAATGGAACTTGAATTTGGGATGCCTAATAATATTAATCCAAACTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAAATCAGTTATATGATTCTATCAGTACAAGAAACTTTCCAATTGAAGTCCTTGAGGTAAATTGGCCCACTGTCTCTATCATCATCTCTTTCTGTTTCTTGAAATTTTTTAAGAATCAAAATGAACGAATACATTAAGAAATAGTATTCCCCAACTTAAAAAAAAAAAAAAAAAAGAGGAGATAGATAAATTACTATTATTAAATTGTTATCACTGAGCTCACAACTCATGGACAAACGACTCAAAAACAACTTAGTTCAAAAAAGAGAAAATCAAAGAGCACAAAACTATTTTTTTATAAGCAAACAATATTTAAATTAAAATAGTACAAACATACCCTAATTTTTATACTTTAAGAGTACCATAAACTTAATCTTAGATTCACACATCATTAATTTTAATAAAATAATTAAAGAAGAAGAAAATCATCACTAATTAAAGTGACACCGTAATGACCATCTTATAATTACTTTTAAAAGAATTTAAATTTTATTTGTTGTAAATTACAAAGTCGAATCTCATACCATTAAATTTCAAAAGATCTTTACATTATTTATAAAACGAACAATGATATTTAATTAAACACAAAAATAAGACATTGTATGAGGACCTGTGCAAAAATTTCCAATATAAATATTGATTTGATTAGAAGACAGAAAAAATAATTAAAAATAATGTAAATGAAATATAATTTCTCTAATAAATTAGATAGTGAGATAAAAAAAATAGATAGTGGGATTTTCAAACCATGCTTATAACCAATTTATAAATCACCACCTTAATAAGGTCTACCATTGCCACACCATCAGGTACCCTAATAGAGAAAATATATTAGCTTTATTTTTTAGGTTCATACCAAATCAGACTTTATCCACTTTTTTTTTTTTAACAACCAACCCCCAACAACAAATATAGATTAAAGAAGAAATTGCAAGGCATCACCTCTCTCTTGTATTATTGATGCTAAAAAAATAAATGTGGGGTGTGATGGTTATAACTTTATAATTATCTTTGAATTTCTAAAGTAATTAATTATGAGTGTGTAATTAATTTGATATATGGTTGAGTGCAGCTTAGGGTTACACACATGGAAGAGAATATAATGGTAGTGAGCATGACATGTAACAAAAGGGCAGACACAATGGTAAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTCAAAATTATTACTGCCAATATATCCTCTTTCTCAGGCAGGCTTTCGAAGACAGTCTTCATTGAG
Protein sequence

>MS.gene55105.t1

MENIGAEYNPYRETNIWGLDEALTGYYDSSSADGAASSGVSSKNIVSERNRRNKLNERLLALRAVVPNISKMDKASIIKDAIEYIQVLHEQEKVIQAEIMELEFGMPNNINPNYDFDQELPVLLRSKKKRTNQLYDSISTRNFPIEVLELRVTHMEENIMVVSMTCNKRADTMVKLCEVFESLKLKIITANISSFSGRLSKTVFIE