AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55106

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55106.t1 MTR_2g038040 91.705 217 18 0 1 217 1 217 1.36e-147 410
MS.gene55106.t1 MTR_1g112680 31.646 237 131 7 6 213 258 492 6.89e-19 84.7
MS.gene55106.t1 MTR_8g064700 30.303 165 107 2 51 215 243 399 1.34e-18 83.6
MS.gene55106.t1 MTR_3g498695 32.164 171 109 4 48 216 294 459 4.84e-17 79.3
MS.gene55106.t1 MTR_3g030700 36.095 169 92 6 51 215 195 351 4.75e-16 76.3
MS.gene55106.t1 MTR_3g498695 32.919 161 101 4 48 206 294 449 5.13e-16 76.6
MS.gene55106.t1 MTR_2g084280 47.945 73 36 1 51 123 132 202 6.19e-16 75.5
MS.gene55106.t1 MTR_4g091990 32.121 165 80 3 51 215 44 176 6.98e-16 73.6
MS.gene55106.t1 MTR_4g057270 50.769 65 32 0 51 115 148 212 8.45e-16 75.1
MS.gene55106.t1 MTR_7g117670 46.988 83 39 1 53 130 403 485 1.20e-15 75.5
MS.gene55106.t1 MTR_8g027495 55.932 59 26 0 53 111 459 517 8.83e-15 73.2
MS.gene55106.t1 MTR_7g083900 50.704 71 32 1 49 119 283 350 1.92e-14 72.0
MS.gene55106.t1 MTR_7g083900 50.704 71 32 1 49 119 283 350 1.97e-14 72.0
MS.gene55106.t1 MTR_2g081040 32.927 164 91 6 51 206 176 328 4.04e-14 70.5
MS.gene55106.t1 MTR_7g096350 56.364 55 24 0 53 107 356 410 4.29e-14 70.9
MS.gene55106.t1 MTR_5g030430 50.000 70 32 1 53 119 494 563 7.61e-14 70.5
MS.gene55106.t1 MTR_8g067280 50.000 60 30 0 53 112 463 522 1.90e-13 69.3
MS.gene55106.t1 MTR_8g024790 60.000 45 18 0 53 97 292 336 4.36e-13 67.8
MS.gene55106.t1 MTR_8g024770 60.000 45 18 0 53 97 280 324 5.89e-13 67.4
MS.gene55106.t1 MTR_4g091910 28.916 166 100 2 50 215 45 192 2.25e-12 64.3
MS.gene55106.t1 MTR_2g104560 23.182 220 130 5 12 214 4 201 3.72e-12 63.9
MS.gene55106.t1 MTR_3g104100 31.288 163 93 6 51 205 194 345 5.43e-12 64.7
MS.gene55106.t1 MTR_4g092700 30.556 180 91 8 53 204 159 332 9.24e-12 63.5
MS.gene55106.t1 MTR_1g072320 50.909 55 27 0 43 97 461 515 1.33e-11 63.5
MS.gene55106.t1 MTR_2g010450 49.091 55 28 0 53 107 178 232 3.26e-11 62.0
MS.gene55106.t1 MTR_5g014520 39.189 74 42 1 37 107 139 212 4.83e-11 61.6
MS.gene55106.t1 MTR_3g111290 54.412 68 30 1 48 115 169 235 5.87e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55106.t1 AT5G57150 62.332 223 75 6 1 219 1 218 5.29e-82 244
MS.gene55106.t1 AT5G57150 63.063 222 74 6 1 219 1 217 8.29e-82 243
MS.gene55106.t1 AT5G57150 62.613 222 74 6 1 218 1 217 1.33e-81 243
MS.gene55106.t1 AT5G57150 63.470 219 72 6 1 216 1 214 2.05e-81 243
MS.gene55106.t1 AT5G57150 62.557 219 73 6 1 215 1 214 5.85e-79 238
MS.gene55106.t1 AT4G29930 52.863 227 93 3 1 215 1 225 4.04e-75 228
MS.gene55106.t1 AT4G29930 52.863 227 93 3 1 215 1 225 6.25e-75 227
MS.gene55106.t1 AT4G29930 52.863 227 93 3 1 215 1 225 6.25e-75 227
MS.gene55106.t1 AT4G29930 52.995 217 82 3 1 215 1 199 7.56e-73 221
MS.gene55106.t1 AT4G29930 52.535 217 80 3 1 215 1 196 4.84e-72 219
MS.gene55106.t1 AT4G29930 52.535 217 80 3 1 215 1 196 8.56e-72 218
MS.gene55106.t1 AT4G29930 52.571 175 69 3 1 163 1 173 1.32e-51 165
MS.gene55106.t1 AT1G01260 39.815 108 61 1 24 131 405 508 1.07e-16 78.6
MS.gene55106.t1 AT1G01260 39.815 108 61 1 24 131 405 508 1.07e-16 78.6
MS.gene55106.t1 AT1G01260 39.815 108 61 1 24 131 405 508 1.07e-16 78.6
MS.gene55106.t1 AT2G46510 61.818 55 21 0 53 107 396 450 3.66e-16 77.0
MS.gene55106.t1 AT2G28160 31.013 158 93 4 51 205 130 274 6.43e-16 75.5
MS.gene55106.t1 AT2G28160 31.013 158 93 4 51 205 130 274 7.62e-16 75.1
MS.gene55106.t1 AT2G16910 29.609 179 102 5 51 213 313 483 1.29e-15 75.5
MS.gene55106.t1 AT3G26744 52.055 73 32 1 49 121 304 373 1.90e-15 74.7
MS.gene55106.t1 AT3G26744 52.055 73 32 1 49 121 304 373 1.96e-15 74.7
MS.gene55106.t1 AT3G26744 52.055 73 32 1 49 121 304 373 1.96e-15 74.7
MS.gene55106.t1 AT3G26744 52.055 73 32 1 49 121 304 373 1.96e-15 74.7
MS.gene55106.t1 AT4G16430 46.053 76 40 1 53 127 321 396 4.91e-15 73.6
MS.gene55106.t1 AT1G32640 32.000 150 90 4 53 202 453 590 5.04e-15 73.9
MS.gene55106.t1 AT1G12860 52.857 70 30 1 49 118 264 330 1.14e-14 72.4
MS.gene55106.t1 AT5G46760 33.333 153 87 6 53 202 416 556 1.20e-14 72.8
MS.gene55106.t1 AT1G12860 52.857 70 30 1 49 118 264 330 1.25e-14 72.4
MS.gene55106.t1 AT4G17880 30.864 162 75 5 53 202 417 553 9.42e-14 70.1
MS.gene55106.t1 AT5G46830 48.333 60 31 0 53 112 344 403 1.36e-12 66.6
MS.gene55106.t1 AT4G00870 45.000 60 33 0 53 112 250 309 3.92e-12 65.1
MS.gene55106.t1 AT4G21330 30.818 159 100 4 51 209 31 179 4.66e-12 63.2
MS.gene55106.t1 AT1G63650 29.091 165 106 4 56 212 409 570 3.09e-11 62.8
MS.gene55106.t1 AT1G63650 29.091 165 106 4 56 212 409 570 3.09e-11 62.8
MS.gene55106.t1 AT1G63650 29.091 165 106 4 56 212 409 570 3.09e-11 62.8
MS.gene55106.t1 AT2G22770 40.000 75 45 0 33 107 113 187 4.49e-11 61.6
MS.gene55106.t1 AT1G10610 26.974 152 102 2 51 202 263 405 6.18e-11 61.6
MS.gene55106.t1 AT1G10610 26.974 152 102 2 51 202 233 375 6.79e-11 61.6

Find 40 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCTGTTCTCTTCTTCT+TGG 0.200519 2.2:-49561152 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2.2:+49560991 MS.gene55106:CDS
ACCTATCAAGCTCTTGGGTT+TGG 0.289916 2.2:-49560282 None:intergenic
GTGATGAGTACAAGCTTTAC+TGG 0.315934 2.2:+49560242 MS.gene55106:CDS
GAGATAATGAAACTTGAATC+TGG 0.334828 2.2:+49561067 MS.gene55106:CDS
TAGTTTGGATTAATACTATT+AGG 0.334901 2.2:-49561094 None:intergenic
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2.2:-49560562 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2.2:-49560561 None:intergenic
TCTTGATCAAAATCATAGTT+TGG 0.369624 2.2:-49561109 None:intergenic
TTTACCTCAAGAACTTCAAT+TGG 0.370892 2.2:-49561205 None:intergenic
CCTGATGATGCTGCACCATC+GGG 0.391505 2.2:-49560457 None:intergenic
TTGTGGTTGCAGCTGGGGAT+TGG 0.412240 2.2:+49560399 MS.gene55106:intron
TGAGCTTGACATTTAACAAA+AGG 0.413240 2.2:+49561800 MS.gene55106:CDS
TCCTGATGATGCTGCACCAT+CGG 0.430185 2.2:-49560458 None:intergenic
TCCAAACCCAAGAGCTTGAT+AGG 0.430262 2.2:+49560281 MS.gene55106:CDS
CCCGATGGTGCAGCATCATC+AGG 0.443280 2.2:+49560457 MS.gene55106:CDS
TATCAAGCTCTTGGGTTTGG+AGG 0.453409 2.2:-49560279 None:intergenic
GAGCTTGACATTTAACAAAA+GGG 0.496975 2.2:+49561801 MS.gene55106:CDS
GCAGCTTAGGGTTACATACA+TGG 0.504078 2.2:+49561759 MS.gene55106:intron
CTTTCCAATTGAAGTTCTTG+AGG 0.510871 2.2:+49561201 MS.gene55106:CDS
ACATTGACTCTGAGAGGAAG+AGG 0.514432 2.2:+49560494 MS.gene55106:CDS
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2.2:+49561128 MS.gene55106:CDS
TTGGGTTTGGAGGAACATGT+TGG 0.533281 2.2:-49560269 None:intergenic
ATAAAGCACTTGCATGAACA+AGG 0.548725 2.2:+49561028 MS.gene55106:CDS
AGATAATGAAACTTGAATCT+GGG 0.558096 2.2:+49561068 MS.gene55106:CDS
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2.2:-49561136 None:intergenic
CTCATCACCAATGTTCTCCA+TGG 0.572679 2.2:-49560227 None:intergenic
TGATGATGCTGCACCATCGG+GGG 0.580991 2.2:-49560455 None:intergenic
TGATGAGTACAAGCTTTACT+GGG 0.584970 2.2:+49560243 MS.gene55106:CDS
TTTGAAGACAGTCTTCATTG+AGG 0.586246 2.2:+49561912 MS.gene55106:CDS
TTAACAACCATGGAGAACAT+TGG 0.592898 2.2:+49560220 None:intergenic
CTAAGAACATTGACTCTGAG+AGG 0.615826 2.2:+49560488 MS.gene55106:CDS
TTGACTCTGAGAGGAAGAGG+AGG 0.620990 2.2:+49560497 MS.gene55106:CDS
TAACAAAAGGGCAGACACAA+TGG 0.623993 2.2:+49561813 MS.gene55106:CDS
ACTCTTTGCACTTAGAGCAG+TGG 0.626022 2.2:+49560537 MS.gene55106:CDS
CAGCTTAGGGTTACATACAT+GGG 0.636587 2.2:+49561760 MS.gene55106:intron
CTGATGATGCTGCACCATCG+GGG 0.660135 2.2:-49560456 None:intergenic
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2.2:+49560555 MS.gene55106:CDS
TAAAGCACTTGCATGAACAA+GGG 0.671614 2.2:+49561029 MS.gene55106:CDS
ATACATGGGAGAGAATACAA+TGG 0.777577 2.2:+49561774 MS.gene55106:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTAATAATTAAATAA+TGG - chr2.2:49560604-49560623 None:intergenic 0.0%
!! CAACTTAAAAAAAAAAAAAT+AGG + chr2.2:49561341-49561360 MS.gene55106:intron 10.0%
!! TCCAATTTAAAAAAAAAAAA+AGG + chr2.2:49561314-49561333 MS.gene55106:intron 10.0%
!!! CTATTTTTTTTTTTTTAAGT+TGG - chr2.2:49561343-49561362 None:intergenic 10.0%
!!! TCCTTTTTTTTTTTTTAAAT+TGG - chr2.2:49561318-49561337 None:intergenic 10.0%
!!! GTAATATATTTTCTCTATTA+GGG - chr2.2:49561509-49561528 None:intergenic 15.0%
!!! TGCTTATATTTTATTACAAA+CGG + chr2.2:49560778-49560797 MS.gene55106:intron 15.0%
!!! TTGTTGTTTTATATTATTTG+AGG - chr2.2:49562082-49562101 None:intergenic 15.0%
!! AACTTCAAAAAAATAGATAG+TGG + chr2.2:49561408-49561427 MS.gene55106:intron 20.0%
!! AATTTCTTTCTAATTATGAG+TGG + chr2.2:49560945-49560964 MS.gene55106:intron 20.0%
!! ACTGGAATTTAGATAAATTT+AGG + chr2.2:49562216-49562235 MS.gene55106:intron 20.0%
!! ACTTCAAAAAAATAGATAGT+GGG + chr2.2:49561409-49561428 MS.gene55106:intron 20.0%
!! ACTTGTAATAGAAAAATGTT+TGG - chr2.2:49562137-49562156 None:intergenic 20.0%
!! AGAAAGTGAAATGAAATTAA+AGG - chr2.2:49561949-49561968 None:intergenic 20.0%
!! ATGCTAAAAAAATAAATGTG+GGG + chr2.2:49561655-49561674 MS.gene55106:intron 20.0%
!! CTACTATCTTCATAAAATAT+AGG + chr2.2:49560701-49560720 MS.gene55106:intron 20.0%
!! CTGGAATTTAGATAAATTTA+GGG + chr2.2:49562217-49562236 MS.gene55106:intron 20.0%
!! GAAATAATTAAACCATATGA+TGG - chr2.2:49560904-49560923 None:intergenic 20.0%
!! GATGCTAAAAAAATAAATGT+GGG + chr2.2:49561654-49561673 MS.gene55106:intron 20.0%
!! GTTAGCAAAAAAAATAATAG+TGG - chr2.2:49561567-49561586 None:intergenic 20.0%
!! TACAACATGAATATTAAAAC+TGG + chr2.2:49562198-49562217 MS.gene55106:intron 20.0%
!! TAGTTTGGATTAATACTATT+AGG - chr2.2:49561097-49561116 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG + chr2.2:49561653-49561672 MS.gene55106:intron 20.0%
!! TTGAATCAAAGTGAATTAAA+TGG - chr2.2:49560315-49560334 None:intergenic 20.0%
!!! ATTAGTACTACTCAATTTTT+TGG + chr2.2:49560621-49560640 MS.gene55106:intron 20.0%
!!! GGTAATATATTTTCTCTATT+AGG - chr2.2:49561510-49561529 None:intergenic 20.0%
!!! TATGCTTTTAATTTTTGTGT+TGG - chr2.2:49562169-49562188 None:intergenic 20.0%
!!! TCTTTAATCTATTTGTTGTT+GGG - chr2.2:49561598-49561617 None:intergenic 20.0%
!!! TTAGTACTACTCAATTTTTT+GGG + chr2.2:49560622-49560641 MS.gene55106:intron 20.0%
!!! TTCTTTAATCTATTTGTTGT+TGG - chr2.2:49561599-49561618 None:intergenic 20.0%
!!! TTGTTTGAATTAAGTGTTTT+GGG + chr2.2:49560672-49560691 MS.gene55106:intron 20.0%
!!! TTTGTTTGAATTAAGTGTTT+TGG + chr2.2:49560671-49560690 MS.gene55106:intron 20.0%
! AAATTTAGGGAGATATATCA+AGG + chr2.2:49562230-49562249 MS.gene55106:intron 25.0%
! ACCTACAAAGCAAATTAAAT+AGG - chr2.2:49562031-49562050 None:intergenic 25.0%
! AGATAATGAAACTTGAATCT+GGG + chr2.2:49561068-49561087 MS.gene55106:CDS 25.0%
! AGATTAAAGAAGAGATTGTA+AGG + chr2.2:49561608-49561627 MS.gene55106:intron 25.0%
! ATCATGGTAATTGAGATATA+TGG + chr2.2:49560376-49560395 MS.gene55106:intron 25.0%
! GAAAACTATTAACCATCATA+TGG + chr2.2:49560889-49560908 MS.gene55106:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG + chr2.2:49560991-49561010 MS.gene55106:CDS 25.0%
! GGTACAAAAGTAAATGAATT+TGG + chr2.2:49560722-49560741 MS.gene55106:intron 25.0%
! TACAACTCTTTGATATCTAT+TGG + chr2.2:49560867-49560886 MS.gene55106:intron 25.0%
! TATAAATCACCACCTTAATA+AGG + chr2.2:49561458-49561477 MS.gene55106:intron 25.0%
! TCTTGATCAAAATCATAGTT+TGG - chr2.2:49561112-49561131 None:intergenic 25.0%
! TGAGTGTGTAATTTGATATA+TGG + chr2.2:49561730-49561749 MS.gene55106:intron 25.0%
! TGTTTGGCTAAAATATCATT+TGG - chr2.2:49562121-49562140 None:intergenic 25.0%
! TTAAGGTGGTGATTTATATT+TGG - chr2.2:49561456-49561475 None:intergenic 25.0%
!! TATATCAAGGTGTATTCTTT+TGG + chr2.2:49562243-49562262 MS.gene55106:intron 25.0%
!!! CTTTAATCTATTTGTTGTTG+GGG - chr2.2:49561597-49561616 None:intergenic 25.0%
!!! TCCTATTTAATTTGCTTTGT+AGG + chr2.2:49562027-49562046 MS.gene55106:intron 25.0%
!!! TTTAATCTATTTGTTGTTGG+GGG - chr2.2:49561596-49561615 None:intergenic 25.0%
!!! TTTATATTTGGTTCTAAGCA+TGG - chr2.2:49561444-49561463 None:intergenic 25.0%
ACTAATATTATGTGACACAG+TGG + chr2.2:49560805-49560824 MS.gene55106:intron 30.0%
ATGTTTACCTTGCTAATGTT+TGG - chr2.2:49560565-49560584 None:intergenic 30.0%
CTAATATTATGTGACACAGT+GGG + chr2.2:49560806-49560825 MS.gene55106:intron 30.0%
GAGATAATGAAACTTGAATC+TGG + chr2.2:49561067-49561086 MS.gene55106:CDS 30.0%
GAGCTTGACATTTAACAAAA+GGG + chr2.2:49561801-49561820 MS.gene55106:CDS 30.0%
GTAATTGAGATATATGGTTG+TGG + chr2.2:49560382-49560401 MS.gene55106:intron 30.0%
TCACTTTGATTCAAGTATGA+AGG + chr2.2:49560321-49560340 MS.gene55106:intron 30.0%
TGAGCTTGACATTTAACAAA+AGG + chr2.2:49561800-49561819 MS.gene55106:CDS 30.0%
TGGTATTTGATAGGTTGTAA+TGG - chr2.2:49561531-49561550 None:intergenic 30.0%
TGTTTACCTTGCTAATGTTT+GGG - chr2.2:49560564-49560583 None:intergenic 30.0%
TTGAAGTTCTTGAGGTAAAT+TGG + chr2.2:49561209-49561228 MS.gene55106:intron 30.0%
TTTACCTCAAGAACTTCAAT+TGG - chr2.2:49561208-49561227 None:intergenic 30.0%
TTTGAGGAAGAAGAAAATGA+AGG - chr2.2:49562066-49562085 None:intergenic 30.0%
! ATTTTTACCTATCAAGCTCT+TGG - chr2.2:49560291-49560310 None:intergenic 30.0%
! TTTTTACCTATCAAGCTCTT+GGG - chr2.2:49560290-49560309 None:intergenic 30.0%
!! AGTCTGATTTGGTATTTGAT+AGG - chr2.2:49561540-49561559 None:intergenic 30.0%
!! ATAGTGGATAAAGTCTGATT+TGG - chr2.2:49561551-49561570 None:intergenic 30.0%
!!! GTGACTTTTTCTTTTTCAGA+TGG + chr2.2:49560970-49560989 MS.gene55106:intron 30.0%
AGGAAGAAGAAAATGAAGGT+TGG - chr2.2:49562062-49562081 None:intergenic 35.0%
ATACATGGGAGAGAATACAA+TGG + chr2.2:49561774-49561793 MS.gene55106:CDS 35.0%
CTTTCCAATTGAAGTTCTTG+AGG + chr2.2:49561201-49561220 MS.gene55106:CDS 35.0%
GCATCAATAATACAAGAGAG+AGG - chr2.2:49561639-49561658 None:intergenic 35.0%
TGATGAGTACAAGCTTTACT+GGG + chr2.2:49560243-49560262 MS.gene55106:CDS 35.0%
TTTGAAGACAGTCTTCATTG+AGG + chr2.2:49561912-49561931 MS.gene55106:CDS 35.0%
! ATAAAGCACTTGCATGAACA+AGG + chr2.2:49561028-49561047 MS.gene55106:CDS 35.0%
! TAAAGCACTTGCATGAACAA+GGG + chr2.2:49561029-49561048 MS.gene55106:CDS 35.0%
!! ATTTTCTCTATTAGGGTACC+TGG - chr2.2:49561502-49561521 None:intergenic 35.0%
AAAGACGATGATAGAGAGAG+TGG - chr2.2:49561236-49561255 None:intergenic 40.0%
AAGACGATGATAGAGAGAGT+GGG - chr2.2:49561235-49561254 None:intergenic 40.0%
ATATGGTTGAGTGCAGCTTA+GGG + chr2.2:49561747-49561766 MS.gene55106:intron 40.0%
CAGCTTAGGGTTACATACAT+GGG + chr2.2:49561760-49561779 MS.gene55106:intron 40.0%
CTGATCTGTTCTCTTCTTCT+TGG - chr2.2:49561155-49561174 None:intergenic 40.0%
GTGATGAGTACAAGCTTTAC+TGG + chr2.2:49560242-49560261 MS.gene55106:CDS 40.0%
TAACAAAAGGGCAGACACAA+TGG + chr2.2:49561813-49561832 MS.gene55106:CDS 40.0%
TATATGGTTGAGTGCAGCTT+AGG + chr2.2:49561746-49561765 MS.gene55106:intron 40.0%
TATTATGTGACACAGTGGGT+AGG + chr2.2:49560810-49560829 MS.gene55106:intron 40.0%
!! AATGGTAGGCCTTATTAAGG+TGG - chr2.2:49561470-49561489 None:intergenic 40.0%
!! ATCTATTTGTTGTTGGGGGT+TGG - chr2.2:49561592-49561611 None:intergenic 40.0%
!! CTAAGAACATTGACTCTGAG+AGG + chr2.2:49560488-49560507 MS.gene55106:CDS 40.0%
!! GGATTGGATGAAGCTTTTTC+AGG + chr2.2:49560415-49560434 MS.gene55106:CDS 40.0%
ACCTATCAAGCTCTTGGGTT+TGG - chr2.2:49560285-49560304 None:intergenic 45.0%
ACTCTTTGCACTTAGAGCAG+TGG + chr2.2:49560537-49560556 MS.gene55106:CDS 45.0%
AGTGGTCCCAAACATTAGCA+AGG + chr2.2:49560555-49560574 MS.gene55106:CDS 45.0%
ATATGGTTGTGGTTGCAGCT+GGG + chr2.2:49560393-49560412 MS.gene55106:intron 45.0%
CAAAAGCCTGCCTGAAAAAG+AGG - chr2.2:49561896-49561915 None:intergenic 45.0%
GCAGCTTAGGGTTACATACA+TGG + chr2.2:49561759-49561778 MS.gene55106:intron 45.0%
GCCTGAAAAAGAGGTGATGT+TGG - chr2.2:49561887-49561906 None:intergenic 45.0%
TATATGGTTGTGGTTGCAGC+TGG + chr2.2:49560392-49560411 MS.gene55106:intron 45.0%
TATCAAGCTCTTGGGTTTGG+AGG - chr2.2:49560282-49560301 None:intergenic 45.0%
TCCAAACCCAAGAGCTTGAT+AGG + chr2.2:49560281-49560300 MS.gene55106:CDS 45.0%
TTCTTGGACCTTAGCAACAC+AGG - chr2.2:49561139-49561158 None:intergenic 45.0%
TTGGGTTTGGAGGAACATGT+TGG - chr2.2:49560272-49560291 None:intergenic 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG + chr2.2:49561128-49561147 MS.gene55106:CDS 45.0%
! GCCAACATCACCTCTTTTTC+AGG + chr2.2:49561883-49561902 MS.gene55106:CDS 45.0%
! TTCTCTATTAGGGTACCTGG+TGG - chr2.2:49561499-49561518 None:intergenic 45.0%
!! ACATTGACTCTGAGAGGAAG+AGG + chr2.2:49560494-49560513 MS.gene55106:CDS 45.0%
!! GGCAATGGTAGGCCTTATTA+AGG - chr2.2:49561473-49561492 None:intergenic 45.0%
!!! ACATCACCTCTTTTTCAGGC+AGG + chr2.2:49561887-49561906 MS.gene55106:CDS 45.0%
!! TAATTAATTATAATTAATCA+TGG + chr2.2:49560360-49560379 MS.gene55106:intron 5.0%
!!! AATATATATTTTTAATAAAG+AGG - chr2.2:49562005-49562024 None:intergenic 5.0%
TATGATTCAAGCTCCCCCGA+TGG + chr2.2:49560442-49560461 MS.gene55106:CDS 50.0%
TATGGTTGTGGTTGCAGCTG+GGG + chr2.2:49560394-49560413 MS.gene55106:intron 50.0%
! TATTAGGGTACCTGGTGGTG+TGG - chr2.2:49561494-49561513 None:intergenic 50.0%
! TCCTGATGATGCTGCACCAT+CGG - chr2.2:49560461-49560480 None:intergenic 50.0%
! TTGACTCTGAGAGGAAGAGG+AGG + chr2.2:49560497-49560516 MS.gene55106:CDS 50.0%
TTGTGGTTGCAGCTGGGGAT+TGG + chr2.2:49560399-49560418 MS.gene55106:intron 55.0%
! CCTGATGATGCTGCACCATC+GGG - chr2.2:49560460-49560479 None:intergenic 55.0%
! CTGATGATGCTGCACCATCG+GGG - chr2.2:49560459-49560478 None:intergenic 55.0%
! TGATGATGCTGCACCATCGG+GGG - chr2.2:49560458-49560477 None:intergenic 55.0%
CCCGATGGTGCAGCATCATC+AGG + chr2.2:49560457-49560476 MS.gene55106:CDS 60.0%
CCTACCATTGCCACACCACC+AGG + chr2.2:49561481-49561500 MS.gene55106:intron 60.0%
! CCTGGTGGTGTGGCAATGGT+AGG - chr2.2:49561484-49561503 None:intergenic 60.0%
! GGTACCTGGTGGTGTGGCAA+TGG - chr2.2:49561488-49561507 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 49560229 49562291 49560229 ID=MS.gene55106
chr2.2 mRNA 49560229 49562291 49560229 ID=MS.gene55106.t1;Parent=MS.gene55106
chr2.2 exon 49560229 49560302 49560229 ID=MS.gene55106.t1.exon1;Parent=MS.gene55106.t1
chr2.2 CDS 49560229 49560302 49560229 ID=cds.MS.gene55106.t1;Parent=MS.gene55106.t1
chr2.2 exon 49560411 49560576 49560411 ID=MS.gene55106.t1.exon2;Parent=MS.gene55106.t1
chr2.2 CDS 49560411 49560576 49560411 ID=cds.MS.gene55106.t1;Parent=MS.gene55106.t1
chr2.2 exon 49560989 49561222 49560989 ID=MS.gene55106.t1.exon3;Parent=MS.gene55106.t1
chr2.2 CDS 49560989 49561222 49560989 ID=cds.MS.gene55106.t1;Parent=MS.gene55106.t1
chr2.2 exon 49561763 49561933 49561763 ID=MS.gene55106.t1.exon4;Parent=MS.gene55106.t1
chr2.2 CDS 49561763 49561933 49561763 ID=cds.MS.gene55106.t1;Parent=MS.gene55106.t1
chr2.2 exon 49562271 49562291 49562271 ID=MS.gene55106.t1.exon5;Parent=MS.gene55106.t1
chr2.2 CDS 49562271 49562291 49562271 ID=cds.MS.gene55106.t1;Parent=MS.gene55106.t1
Gene Sequence

>MS.gene55106

ATGGAGAACATTGGTGATGAGTACAAGCTTTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGATAGGTAAAAATACCATTTAATTCACTTTGATTCAAGTATGAAGGTACAATTAGTGAAATTTAATTAATTATAATTAATCATGGTAATTGAGATATATGGTTGTGGTTGCAGCTGGGGATTGGATGAAGCTTTTTCAGGATATTATGATTCAAGCTCCCCCGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGACTCTGAGAGGAAGAGGAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGGTAAACATCACAAATTTTAGTAGTCCATTATTTAATTATTAATAATTAGTACTACTCAATTTTTTGGGTGCAATTTTGCTATTGATTTTTTTGTTTTGTTTGAATTAAGTGTTTTGGGTGAAAACTACTATCTTCATAAAATATAGGTACAAAAGTAAATGAATTTGGTTCATATTTAGACTATATATACATGTATTGTTTTGCTTATATTTTATTACAAACGGAGTAACTAATATTATGTGACACAGTGGGTAGGTAATTTAATTTTTTAAACATGTTGTTAGAGTACATACAACTCTTTGATATCTATTGGAAAACTATTAACCATCATATGGTTTAATTATTTCGAATGATTAGTCTATGACGTCAATTTCTTTCTAATTATGAGTGGTAGTGACTTTTTCTTTTTCAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATAAAGCACTTGCATGAACAAGGGAAGATTATTCAAGCTGAGATAATGAAACTTGAATCTGGGATGCCTAATAGTATTAATCCAAACTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAGTTATATGATTCTGTCACTTCAAGAAACTTTCCAATTGAAGTTCTTGAGGTAAATTGGCCCACTCTCTCTATCATCGTCTTTTTCTCTTTCATGAAATTTTTTAAGAATCAAAATGAATGAATATATTAAGAAACATTATTCCAATTTAAAAAAAAAAAAAGGAAACCAACTTAAAAAAAAAAAAATAGGAAATAGATAAATTATTATCAAATTGTCATTATCACTGAGCTCACAACTTCAAAAAAATAGATAGTGGGATTTTCAAACCATGCTTAGAACCAAATATAAATCACCACCTTAATAAGGCCTACCATTGCCACACCACCAGGTACCCTAATAGAGAAAATATATTACCATTACAACCTATCAAATACCAAATCAGACTTTATCCACTATTATTTTTTTTGCTAACAACCAACCCCCAACAACAAATAGATTAAAGAAGAGATTGTAAGGCATAACCTCTCTCTTGTATTATTGATGCTAAAAAAATAAATGTGGGGTGTGATGATTATAATTTTATAATTATCTTTGAATTTCTAAAGCAATTAATTATGAGTGTGTAATTTGATATATGGTTGAGTGCAGCTTAGGGTTACATACATGGGAGAGAATACAATGGTAGTGAGCTTGACATTTAACAAAAGGGCAGACACAATGGTGAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTTAAAATTATTACTGCCAACATCACCTCTTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGTTACTTTTTATCCTTTAATTTCATTTCACTTTCTTTATTTTATAATAAATATATGATGATAGTTCATCCTCTTTATTAAAAATATATATTATTCCTATTTAATTTGCTTTGTAGGTAGAGTAGACCAACCTTCATTTTCTTCTTCCTCAAATAATATAAAACAACAAAATTTAAATGTTATAACCAAATGATATTTTAGCCAAACATTTTTCTATTACAAGTTTTTTCTTACCAACACAAAAATTAAAAGCATATATTATATATACAACATGAATATTAAAACTGGAATTTAGATAAATTTAGGGAGATATATCAAGGTGTATTCTTTTGGTGCAGTGCTCTATAGCTTCAAAATAG
Protein sequence

>MS.gene55106.t1

MENIGDEYKLYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSGVSSKNIDSERKRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIKHLHEQGKIIQAEIMKLESGMPNSINPNYDFDQELPVLLRSKKKRTDQLYDSVTSRNFPIEVLELRVTYMGENTMVVSLTFNKRADTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIECSIASK