Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55107.t1 | XP_003595077.1 | 94.3 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 9.20E-121 | 443 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55107.t1 | Q2HIV9 | 61.6 | 245 | 85 | 5 | 1 | 241 | 1 | 240 | 2.4e-69 | 263.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55107.t1 | G7IG90 | 94.3 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 6.6e-121 | 443.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene55107.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55107.t1 | MTR_2g038040 | 94.262 | 244 | 14 | 0 | 1 | 244 | 1 | 244 | 6.41e-173 | 476 |
MS.gene55107.t1 | MTR_8g064700 | 32.353 | 170 | 107 | 2 | 51 | 220 | 243 | 404 | 1.45e-23 | 98.6 |
MS.gene55107.t1 | MTR_1g112680 | 32.911 | 237 | 128 | 7 | 6 | 213 | 258 | 492 | 4.84e-22 | 94.7 |
MS.gene55107.t1 | MTR_3g030700 | 34.946 | 186 | 105 | 6 | 51 | 232 | 195 | 368 | 1.66e-20 | 89.4 |
MS.gene55107.t1 | MTR_2g084280 | 28.796 | 191 | 113 | 5 | 51 | 236 | 132 | 304 | 6.63e-19 | 84.3 |
MS.gene55107.t1 | MTR_3g498695 | 30.481 | 187 | 123 | 4 | 48 | 232 | 294 | 475 | 2.58e-18 | 84.0 |
MS.gene55107.t1 | MTR_7g083900 | 32.632 | 190 | 115 | 6 | 49 | 232 | 283 | 465 | 1.15e-17 | 82.0 |
MS.gene55107.t1 | MTR_3g498695 | 30.481 | 187 | 122 | 5 | 48 | 232 | 294 | 474 | 1.45e-17 | 81.6 |
MS.gene55107.t1 | MTR_2g081040 | 30.526 | 190 | 113 | 6 | 51 | 232 | 176 | 354 | 3.80e-17 | 79.7 |
MS.gene55107.t1 | MTR_4g057270 | 31.098 | 164 | 96 | 3 | 51 | 211 | 148 | 297 | 9.22e-17 | 78.6 |
MS.gene55107.t1 | MTR_7g083900 | 32.461 | 191 | 115 | 7 | 49 | 232 | 283 | 466 | 2.40e-16 | 78.2 |
MS.gene55107.t1 | MTR_3g104100 | 28.947 | 190 | 116 | 6 | 51 | 232 | 194 | 372 | 8.58e-15 | 73.2 |
MS.gene55107.t1 | MTR_7g096350 | 30.286 | 175 | 85 | 4 | 53 | 227 | 356 | 493 | 1.80e-14 | 72.8 |
MS.gene55107.t1 | MTR_8g027495 | 55.932 | 59 | 26 | 0 | 53 | 111 | 459 | 517 | 5.81e-14 | 71.2 |
MS.gene55107.t1 | MTR_7g117670 | 28.846 | 156 | 80 | 4 | 53 | 203 | 403 | 532 | 6.86e-14 | 70.9 |
MS.gene55107.t1 | MTR_2g104560 | 23.684 | 228 | 134 | 6 | 12 | 221 | 4 | 209 | 9.25e-14 | 68.9 |
MS.gene55107.t1 | MTR_4g092700 | 28.049 | 164 | 101 | 4 | 53 | 214 | 159 | 307 | 1.44e-13 | 69.3 |
MS.gene55107.t1 | MTR_8g067280 | 29.487 | 156 | 96 | 3 | 53 | 202 | 463 | 610 | 2.32e-13 | 69.3 |
MS.gene55107.t1 | MTR_5g030430 | 30.719 | 153 | 98 | 4 | 53 | 202 | 494 | 641 | 5.07e-13 | 68.6 |
MS.gene55107.t1 | MTR_8g024790 | 50.820 | 61 | 23 | 1 | 53 | 113 | 292 | 345 | 3.81e-12 | 65.9 |
MS.gene55107.t1 | MTR_8g069740 | 25.253 | 198 | 134 | 6 | 21 | 217 | 83 | 267 | 4.45e-12 | 64.7 |
MS.gene55107.t1 | MTR_8g024770 | 60.000 | 45 | 18 | 0 | 53 | 97 | 280 | 324 | 5.48e-12 | 65.1 |
MS.gene55107.t1 | MTR_5g014600 | 26.257 | 179 | 109 | 6 | 53 | 219 | 150 | 317 | 6.30e-12 | 64.7 |
MS.gene55107.t1 | MTR_2g010450 | 28.221 | 163 | 103 | 2 | 53 | 214 | 178 | 327 | 6.42e-12 | 64.7 |
MS.gene55107.t1 | MTR_3g111290 | 51.282 | 78 | 34 | 2 | 48 | 122 | 169 | 245 | 1.01e-11 | 63.9 |
MS.gene55107.t1 | MTR_1g072320 | 50.909 | 55 | 27 | 0 | 43 | 97 | 461 | 515 | 1.27e-11 | 64.3 |
MS.gene55107.t1 | MTR_5g030770 | 35.032 | 157 | 80 | 4 | 48 | 204 | 152 | 286 | 1.99e-11 | 63.2 |
MS.gene55107.t1 | MTR_4g091910 | 28.743 | 167 | 99 | 3 | 50 | 215 | 45 | 192 | 3.68e-11 | 61.2 |
MS.gene55107.t1 | MTR_2g104490 | 25.758 | 198 | 117 | 6 | 53 | 242 | 138 | 313 | 5.19e-11 | 62.0 |
MS.gene55107.t1 | MTR_4g097950 | 37.500 | 80 | 46 | 1 | 37 | 112 | 51 | 130 | 7.77e-11 | 60.8 |
MS.gene55107.t1 | MTR_5g014520 | 37.838 | 74 | 43 | 1 | 37 | 107 | 139 | 212 | 9.35e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55107.t1 | AT5G57150 | 63.525 | 244 | 81 | 6 | 1 | 241 | 1 | 239 | 1.50e-96 | 283 |
MS.gene55107.t1 | AT4G29930 | 55.200 | 250 | 98 | 3 | 1 | 238 | 1 | 248 | 4.66e-90 | 266 |
MS.gene55107.t1 | AT4G29930 | 55.417 | 240 | 87 | 3 | 1 | 238 | 1 | 222 | 8.43e-88 | 259 |
MS.gene55107.t1 | AT4G29930 | 55.000 | 240 | 85 | 3 | 1 | 238 | 1 | 219 | 7.64e-87 | 257 |
MS.gene55107.t1 | AT5G57150 | 65.596 | 218 | 67 | 6 | 1 | 215 | 1 | 213 | 1.57e-86 | 256 |
MS.gene55107.t1 | AT5G57150 | 63.801 | 221 | 71 | 6 | 1 | 217 | 1 | 216 | 1.41e-85 | 254 |
MS.gene55107.t1 | AT5G57150 | 64.384 | 219 | 69 | 6 | 1 | 215 | 1 | 214 | 1.44e-85 | 254 |
MS.gene55107.t1 | AT5G57150 | 64.384 | 219 | 69 | 6 | 1 | 215 | 1 | 214 | 6.46e-84 | 251 |
MS.gene55107.t1 | AT4G29930 | 54.825 | 228 | 89 | 3 | 1 | 216 | 1 | 226 | 6.54e-80 | 241 |
MS.gene55107.t1 | AT4G29930 | 54.825 | 228 | 89 | 3 | 1 | 216 | 1 | 226 | 6.54e-80 | 241 |
MS.gene55107.t1 | AT4G29930 | 54.587 | 218 | 76 | 3 | 1 | 216 | 1 | 197 | 1.52e-76 | 231 |
MS.gene55107.t1 | AT4G29930 | 54.857 | 175 | 65 | 3 | 1 | 163 | 1 | 173 | 8.01e-55 | 174 |
MS.gene55107.t1 | AT1G12860 | 33.690 | 187 | 111 | 6 | 49 | 232 | 264 | 440 | 1.10e-18 | 84.7 |
MS.gene55107.t1 | AT3G26744 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.19e-18 | 84.0 |
MS.gene55107.t1 | AT3G26744 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.19e-18 | 84.0 |
MS.gene55107.t1 | AT3G26744 | 32.447 | 188 | 116 | 5 | 49 | 232 | 304 | 484 | 2.19e-18 | 84.0 |
MS.gene55107.t1 | AT2G28160 | 31.013 | 158 | 93 | 4 | 51 | 205 | 130 | 274 | 2.05e-17 | 80.1 |
MS.gene55107.t1 | AT2G28160 | 31.013 | 158 | 93 | 4 | 51 | 205 | 130 | 274 | 2.20e-17 | 80.1 |
MS.gene55107.t1 | AT2G16910 | 31.183 | 186 | 113 | 5 | 51 | 225 | 313 | 494 | 3.43e-17 | 80.9 |
MS.gene55107.t1 | AT3G26744 | 34.568 | 162 | 95 | 5 | 49 | 206 | 304 | 458 | 1.77e-16 | 78.6 |
MS.gene55107.t1 | AT1G01260 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.49e-16 | 77.4 |
MS.gene55107.t1 | AT1G01260 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.49e-16 | 77.4 |
MS.gene55107.t1 | AT1G01260 | 29.518 | 166 | 82 | 3 | 53 | 218 | 434 | 564 | 5.49e-16 | 77.4 |
MS.gene55107.t1 | AT2G46510 | 61.818 | 55 | 21 | 0 | 53 | 107 | 396 | 450 | 2.81e-15 | 75.1 |
MS.gene55107.t1 | AT1G12860 | 34.783 | 161 | 92 | 6 | 49 | 206 | 264 | 414 | 3.39e-15 | 74.7 |
MS.gene55107.t1 | AT5G46760 | 29.032 | 186 | 115 | 7 | 53 | 233 | 416 | 589 | 3.49e-15 | 74.7 |
MS.gene55107.t1 | AT4G17880 | 30.625 | 160 | 78 | 4 | 53 | 202 | 417 | 553 | 2.97e-14 | 72.0 |
MS.gene55107.t1 | AT4G16430 | 46.053 | 76 | 40 | 1 | 53 | 127 | 321 | 396 | 3.69e-14 | 71.6 |
MS.gene55107.t1 | AT1G32640 | 31.333 | 150 | 91 | 4 | 53 | 202 | 453 | 590 | 6.26e-14 | 71.2 |
MS.gene55107.t1 | AT4G37850 | 29.444 | 180 | 107 | 6 | 53 | 228 | 153 | 316 | 1.43e-13 | 69.3 |
MS.gene55107.t1 | AT4G37850 | 29.444 | 180 | 107 | 6 | 53 | 228 | 153 | 316 | 1.43e-13 | 69.3 |
MS.gene55107.t1 | AT1G63650 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.08e-13 | 68.6 |
MS.gene55107.t1 | AT1G63650 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.08e-13 | 68.6 |
MS.gene55107.t1 | AT1G63650 | 29.213 | 178 | 116 | 4 | 41 | 212 | 397 | 570 | 5.08e-13 | 68.6 |
MS.gene55107.t1 | AT5G46830 | 27.473 | 182 | 111 | 3 | 53 | 228 | 344 | 510 | 4.15e-12 | 65.9 |
MS.gene55107.t1 | AT4G21330 | 30.357 | 168 | 107 | 4 | 51 | 218 | 31 | 188 | 5.18e-12 | 63.5 |
MS.gene55107.t1 | AT1G10610 | 27.513 | 189 | 120 | 4 | 51 | 232 | 263 | 441 | 1.23e-11 | 64.3 |
MS.gene55107.t1 | AT1G10610 | 27.513 | 189 | 120 | 4 | 51 | 232 | 233 | 411 | 1.59e-11 | 63.9 |
MS.gene55107.t1 | AT1G10610 | 26.064 | 188 | 124 | 3 | 51 | 232 | 166 | 344 | 1.63e-11 | 63.5 |
MS.gene55107.t1 | AT2G22770 | 23.834 | 193 | 117 | 3 | 33 | 209 | 113 | 291 | 5.21e-11 | 62.0 |
MS.gene55107.t1 | AT4G00870 | 43.333 | 60 | 34 | 0 | 53 | 112 | 250 | 309 | 8.74e-11 | 61.6 |
MS.gene55107.t1 | AT2G22750 | 26.178 | 191 | 128 | 4 | 53 | 243 | 155 | 332 | 9.94e-11 | 61.2 |
Find 47 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTGATCAAAATCATAATT+TGG | 0.197391 | 2.2:-49591764 | None:intergenic |
CTGATCTGTTCTCTTCTTCT+TGG | 0.200519 | 2.2:-49591807 | None:intergenic |
GGATAAAGCTTCAATTATTA+AGG | 0.255192 | 2.2:+49591646 | MS.gene55107:CDS |
TAATTTGGATTAATATTATT+AGG | 0.270353 | 2.2:-49591749 | None:intergenic |
ACCTATCAAGCTCTTGGGTT+TGG | 0.289916 | 2.2:-49590569 | None:intergenic |
GTGATGAGTACAAGCTTTAC+TGG | 0.315934 | 2.2:+49590529 | MS.gene55107:CDS |
CCTGATGATGCTGCACCATC+TGG | 0.327488 | 2.2:-49590744 | None:intergenic |
GAGATAATGGAACTTGAATC+TGG | 0.329852 | 2.2:+49591722 | MS.gene55107:CDS |
TGTTTACCTTGCTAATGTTT+GGG | 0.357210 | 2.2:-49590848 | None:intergenic |
GATTATTCAAGCTGAGATAA+TGG | 0.358095 | 2.2:+49591709 | MS.gene55107:CDS |
TCCCTTCATTAGATGCTCAT+AGG | 0.368457 | 2.2:-49599070 | None:intergenic |
TTTACCTCAAGGACTTCAAT+TGG | 0.374167 | 2.2:-49591860 | None:intergenic |
ATTGTTACCTATCAAGCTCT+TGG | 0.383647 | 2.2:-49590575 | None:intergenic |
ATGTTTACCTTGCTAATGTT+TGG | 0.403010 | 2.2:-49590849 | None:intergenic |
TAGATGCTCATAGGGCTTAG+AGG | 0.411365 | 2.2:-49599061 | None:intergenic |
TTGTGGTTGCAGCTGGGGAT+TGG | 0.412240 | 2.2:+49590686 | MS.gene55107:intron |
TTGTTACCTATCAAGCTCTT+GGG | 0.420680 | 2.2:-49590574 | None:intergenic |
TTGCAGCTGGGGATTGGATG+AGG | 0.423798 | 2.2:+49590692 | MS.gene55107:intron |
TCCAAACCCAAGAGCTTGAT+AGG | 0.430262 | 2.2:+49590568 | MS.gene55107:CDS |
CCCTTCATTAGATGCTCATA+GGG | 0.440042 | 2.2:-49599069 | None:intergenic |
TATCAAGCTCTTGGGTTTGG+AGG | 0.453409 | 2.2:-49590566 | None:intergenic |
ACATTGTCTCTGAAAGGAAT+AGG | 0.453984 | 2.2:+49590781 | MS.gene55107:CDS |
CCAGATGGTGCAGCATCATC+AGG | 0.460325 | 2.2:+49590744 | MS.gene55107:CDS |
TGAGCTTGACATGTAACAAA+AGG | 0.468788 | 2.2:+49593207 | MS.gene55107:CDS |
CTGATGATGCTGCACCATCT+GGG | 0.496200 | 2.2:-49590743 | None:intergenic |
GCAGCTTAGGGTTACATACA+TGG | 0.504078 | 2.2:+49593166 | MS.gene55107:intron |
AAGAGCTTCCTGTGTTGCTA+AGG | 0.527358 | 2.2:+49591783 | MS.gene55107:CDS |
TTGGGTTTGGAGGAACATGT+TGG | 0.533281 | 2.2:-49590556 | None:intergenic |
CTAAGAACATTGTCTCTGAA+AGG | 0.544041 | 2.2:+49590775 | MS.gene55107:CDS |
GAGCTTGACATGTAACAAAA+GGG | 0.547151 | 2.2:+49593208 | MS.gene55107:CDS |
CTTTCCAATTGAAGTCCTTG+AGG | 0.548914 | 2.2:+49591856 | MS.gene55107:CDS |
TGATGATGCTGCACCATCTG+GGG | 0.561453 | 2.2:-49590742 | None:intergenic |
TTCTTGGACCTTAGCAACAC+AGG | 0.566724 | 2.2:-49591791 | None:intergenic |
AGGGTCATTAAGAGCTGCAA+TGG | 0.567337 | 2.2:-49599041 | None:intergenic |
CTCATCACCAATGTTCTCCA+TGG | 0.572679 | 2.2:-49590514 | None:intergenic |
AGATGCTCATAGGGCTTAGA+GGG | 0.580755 | 2.2:-49599060 | None:intergenic |
TGATGAGTACAAGCTTTACT+GGG | 0.584970 | 2.2:+49590530 | MS.gene55107:CDS |
TTTGAAGACAGTCTTCATTG+AGG | 0.586246 | 2.2:+49593319 | MS.gene55107:CDS |
TTAACAACCATGGAGAACAT+TGG | 0.592898 | 2.2:+49590507 | None:intergenic |
TTGTCTCTGAAAGGAATAGG+AGG | 0.600641 | 2.2:+49590784 | MS.gene55107:CDS |
AGATAATGGAACTTGAATCT+GGG | 0.607917 | 2.2:+49591723 | MS.gene55107:CDS |
TAACAAAAGGGCAGACACAA+TGG | 0.621554 | 2.2:+49593220 | MS.gene55107:CDS |
ACTCTTTGCACTTAGAGCAG+TGG | 0.626022 | 2.2:+49590824 | MS.gene55107:CDS |
TATGATTCAAGCTCCCCAGA+TGG | 0.634637 | 2.2:+49590729 | MS.gene55107:CDS |
CAGCTTAGGGTTACATACAT+GGG | 0.636587 | 2.2:+49593167 | MS.gene55107:intron |
AGTGGTCCCAAACATTAGCA+AGG | 0.661525 | 2.2:+49590842 | MS.gene55107:CDS |
ATACATGGGAGAGAATACAA+TGG | 0.777577 | 2.2:+49593181 | MS.gene55107:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 49590516 | 49599084 | 49590516 | ID=MS.gene55107 |
chr2.2 | mRNA | 49590516 | 49599084 | 49590516 | ID=MS.gene55107.t1;Parent=MS.gene55107 |
chr2.2 | exon | 49590516 | 49590589 | 49590516 | ID=MS.gene55107.t1.exon1;Parent=MS.gene55107.t1 |
chr2.2 | CDS | 49590516 | 49590589 | 49590516 | ID=cds.MS.gene55107.t1;Parent=MS.gene55107.t1 |
chr2.2 | exon | 49590698 | 49590863 | 49590698 | ID=MS.gene55107.t1.exon2;Parent=MS.gene55107.t1 |
chr2.2 | CDS | 49590698 | 49590863 | 49590698 | ID=cds.MS.gene55107.t1;Parent=MS.gene55107.t1 |
chr2.2 | exon | 49591644 | 49591877 | 49591644 | ID=MS.gene55107.t1.exon3;Parent=MS.gene55107.t1 |
chr2.2 | CDS | 49591644 | 49591877 | 49591644 | ID=cds.MS.gene55107.t1;Parent=MS.gene55107.t1 |
chr2.2 | exon | 49593170 | 49593340 | 49593170 | ID=MS.gene55107.t1.exon4;Parent=MS.gene55107.t1 |
chr2.2 | CDS | 49593170 | 49593340 | 49593170 | ID=cds.MS.gene55107.t1;Parent=MS.gene55107.t1 |
chr2.2 | exon | 49598995 | 49599084 | 49598995 | ID=MS.gene55107.t1.exon5;Parent=MS.gene55107.t1 |
chr2.2 | CDS | 49598995 | 49599084 | 49598995 | ID=cds.MS.gene55107.t1;Parent=MS.gene55107.t1 |
Gene Sequence |
Protein sequence |