AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55118

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55118.t1 MTR_1g013060 68.778 221 68 1 14 234 11 230 2.23e-103 303
MS.gene55118.t1 MTR_6g060410 77.037 135 20 2 1 135 61 184 1.36e-66 208
MS.gene55118.t1 MTR_4g080290 90.476 105 10 0 1 105 1 105 5.48e-64 198
MS.gene55118.t1 MTR_6g051425 35.145 276 169 4 26 295 13 284 2.37e-50 171
MS.gene55118.t1 MTR_0558s0020 33.858 254 144 8 32 266 41 289 7.62e-34 126
MS.gene55118.t1 MTR_8g446020 37.222 180 108 4 94 270 76 253 5.66e-29 112
MS.gene55118.t1 MTR_6g090505 32.143 224 133 7 57 266 6 224 1.02e-24 103
MS.gene55118.t1 MTR_7g446510 33.333 165 109 1 118 281 165 329 1.12e-24 102
MS.gene55118.t1 MTR_7g446480 33.333 165 109 1 118 281 150 314 2.52e-24 101
MS.gene55118.t1 MTR_1g070355 29.461 241 159 4 33 270 80 312 5.95e-24 102
MS.gene55118.t1 MTR_1g083640 30.472 233 138 8 32 245 56 283 1.87e-22 95.9
MS.gene55118.t1 MTR_5g076070 28.205 234 159 5 30 261 56 282 3.56e-22 94.7
MS.gene55118.t1 MTR_7g446520 28.205 234 142 4 43 275 107 315 2.74e-21 93.2
MS.gene55118.t1 MTR_4g035820 24.528 318 215 8 27 334 75 377 3.17e-19 89.0
MS.gene55118.t1 MTR_4g067290 34.921 126 70 4 11 134 41 156 5.26e-15 73.9
MS.gene55118.t1 MTR_4g067290 34.921 126 70 4 11 134 41 156 5.53e-15 73.9
MS.gene55118.t1 MTR_4g067290 34.921 126 70 4 11 134 61 176 7.24e-15 73.9
MS.gene55118.t1 MTR_4g067290 34.921 126 70 4 11 134 59 174 7.40e-15 73.9
MS.gene55118.t1 MTR_4g067290 34.921 126 70 4 11 134 61 176 7.61e-15 73.9
MS.gene55118.t1 MTR_4g067290 34.921 126 70 4 11 134 101 216 9.70e-15 73.9
MS.gene55118.t1 MTR_2g098920 32.353 136 81 3 1 134 54 180 1.83e-12 67.0
MS.gene55118.t1 MTR_3g450850 22.222 243 172 5 30 261 50 286 2.04e-12 67.8
MS.gene55118.t1 MTR_1g008290 31.304 115 77 2 116 229 31 144 1.15e-11 62.4
MS.gene55118.t1 MTR_0337s0040 28.736 174 111 5 66 230 45 214 2.05e-11 63.5
MS.gene55118.t1 MTR_2g014100 28.652 178 110 6 32 194 49 224 2.74e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55118.t1 AT4G38180 36.697 327 190 4 19 335 59 378 2.74e-61 209
MS.gene55118.t1 AT4G15090 34.347 329 194 8 22 341 46 361 5.68e-47 170
MS.gene55118.t1 AT4G15090 34.347 329 194 8 22 341 46 361 5.68e-47 170
MS.gene55118.t1 AT4G15090 34.347 329 194 8 22 341 46 361 5.68e-47 170
MS.gene55118.t1 AT4G15090 34.347 329 194 8 22 341 46 361 5.68e-47 170
MS.gene55118.t1 AT4G15090 34.347 329 194 8 22 341 46 361 5.68e-47 170
MS.gene55118.t1 AT2G27110 32.258 310 178 4 26 335 48 325 2.28e-45 166
MS.gene55118.t1 AT2G27110 32.258 310 178 4 26 335 48 325 2.28e-45 166
MS.gene55118.t1 AT2G27110 47.692 130 68 0 206 335 51 180 2.03e-38 145
MS.gene55118.t1 AT3G22170 28.840 319 196 5 25 335 68 363 2.37e-38 145
MS.gene55118.t1 AT3G22170 28.840 319 196 5 25 335 68 363 2.37e-38 145
MS.gene55118.t1 AT1G76320 30.479 292 187 6 33 323 3 279 4.16e-36 138
MS.gene55118.t1 AT1G76320 30.479 292 187 6 33 323 3 279 4.65e-36 138
MS.gene55118.t1 AT1G76320 30.479 292 187 6 33 323 3 279 4.65e-36 138
MS.gene55118.t1 AT1G76320 30.479 292 187 6 33 323 3 279 4.67e-36 138
MS.gene55118.t1 AT3G06250 30.892 314 165 8 26 335 189 454 5.56e-35 135
MS.gene55118.t1 AT3G06250 30.892 314 165 8 26 335 189 454 5.56e-35 135
MS.gene55118.t1 AT3G06250 30.892 314 165 8 26 335 189 454 5.56e-35 135
MS.gene55118.t1 AT5G28530 27.378 347 230 6 1 331 27 367 5.43e-33 129
MS.gene55118.t1 AT5G28530 27.378 347 230 6 1 331 27 367 5.43e-33 129
MS.gene55118.t1 AT5G28530 27.378 347 230 6 1 331 27 367 5.66e-33 129
MS.gene55118.t1 AT1G10240 28.254 315 206 7 27 331 48 352 8.51e-33 129
MS.gene55118.t1 AT1G10240 28.254 315 206 7 27 331 48 352 8.51e-33 129
MS.gene55118.t1 AT1G52520 27.937 315 197 8 27 335 85 375 4.42e-32 127
MS.gene55118.t1 AT1G80010 27.445 317 211 4 27 335 95 400 5.43e-32 127
MS.gene55118.t1 AT4G38170 48.062 129 61 3 208 335 20 143 7.02e-31 122
MS.gene55118.t1 AT5G18960 27.829 327 161 8 26 335 210 478 1.15e-29 120
MS.gene55118.t1 AT5G18960 27.829 327 161 8 26 335 210 478 1.15e-29 120
MS.gene55118.t1 AT4G19990 27.215 316 183 7 30 335 38 316 2.91e-27 113
MS.gene55118.t1 AT4G19990 27.215 316 183 7 30 335 24 302 3.61e-27 112
MS.gene55118.t1 AT4G19990 27.215 316 183 7 30 335 24 302 3.61e-27 112
MS.gene55118.t1 AT4G19990 27.215 316 183 7 30 335 24 302 4.04e-27 112
MS.gene55118.t1 AT4G19990 27.215 316 183 6 30 335 24 302 4.60e-27 112
MS.gene55118.t1 AT4G19990 27.215 316 183 6 30 335 24 302 4.60e-27 112
MS.gene55118.t1 AT2G32250 39.837 123 74 0 213 335 176 298 2.66e-26 110
MS.gene55118.t1 AT2G32250 39.837 123 74 0 213 335 176 298 2.74e-26 110
MS.gene55118.t1 AT2G32250 39.837 123 74 0 213 335 176 298 2.74e-26 110
MS.gene55118.t1 AT2G32250 39.837 123 74 0 213 335 176 298 3.07e-26 110
MS.gene55118.t1 AT2G32250 39.837 123 74 0 213 335 176 298 3.07e-26 110
MS.gene55118.t1 AT2G32250 39.837 123 74 0 213 335 176 298 3.07e-26 110
MS.gene55118.t1 AT2G32250 39.837 123 74 0 213 335 135 257 3.25e-26 110
MS.gene55118.t1 AT2G32250 39.837 123 74 0 213 335 135 257 3.41e-26 110
MS.gene55118.t1 AT4G19990 41.045 134 78 1 203 335 112 245 4.37e-26 109

Find 49 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAATTCATCATCACAATT+TGG 0.253101 2.2:-49740138 None:intergenic
TCCTTATCATCCGTCTTATT+TGG 0.253463 2.2:-49740324 None:intergenic
TACCTCATACGCATAATAAA+AGG 0.300798 2.2:-49740751 None:intergenic
TGAAACCACATCCCCAAATA+AGG 0.310942 2.2:-49740835 None:intergenic
AGTTCACAAAAGCGTATTAC+AGG 0.315430 2.2:+49740536 MS.gene55118:CDS
CATTTCTATAGCCACTTTCA+TGG 0.315937 2.2:-49741060 None:intergenic
TCAAATACTTGTCCAATCTT+AGG 0.341635 2.2:-49740162 None:intergenic
ATTCAAAGTCTTTAAATCTC+TGG 0.356604 2.2:-49740667 None:intergenic
CATGAAAGTGGCTATAGAAA+TGG 0.375251 2.2:+49741061 MS.gene55118:CDS
ATGCAAATGTTGGTTTCAAA+TGG 0.403760 2.2:+49740406 MS.gene55118:CDS
TTTGGGCAGATGGTATTTGT+AGG 0.408238 2.2:+49740802 MS.gene55118:CDS
CTTAGAAACGGTCTCTTCAT+AGG 0.411850 2.2:-49740492 None:intergenic
CTATGAAGAGACCGTTTCTA+AGG 0.416138 2.2:+49740493 MS.gene55118:CDS
TTATTCCTTATTTGGGGATG+TGG 0.431251 2.2:+49740830 MS.gene55118:CDS
GATGAATTAAAGCCTAAGAT+TGG 0.441758 2.2:+49740150 MS.gene55118:CDS
GCATGTAGTAGAGCAAATAT+TGG 0.447678 2.2:+49740558 MS.gene55118:CDS
GCCAAATAAGACGGATGATA+AGG 0.447708 2.2:+49740323 MS.gene55118:CDS
TGATCGGTTATTATAAGAGT+TGG 0.470629 2.2:-49741029 None:intergenic
CTGTCAAGGTTAGAAGAAGA+AGG 0.491761 2.2:+49740361 MS.gene55118:CDS
AGGTAATAGATTGTCGATGA+TGG 0.498326 2.2:-49740920 None:intergenic
CATCGACAATCTATTACCTT+CGG 0.509460 2.2:+49740924 MS.gene55118:CDS
TTCCTTGCAGACCTTAGAAA+CGG 0.510667 2.2:-49740504 None:intergenic
TCTATAGCCACTTTCATGGA+AGG 0.520478 2.2:-49741056 None:intergenic
TCAAGATCCTTCCATGAAAG+TGG 0.522014 2.2:+49741049 MS.gene55118:CDS
GAAGGATGCAATGCAAATGT+TGG 0.532325 2.2:+49740396 MS.gene55118:CDS
TGCAAATGTTGGTTTCAAAT+GGG 0.534463 2.2:+49740407 MS.gene55118:CDS
AGAAGGGCTTTAACAAGAGA+AGG 0.550276 2.2:+49740378 MS.gene55118:CDS
AATGTTGGTTTCAAATGGGT+GGG 0.551557 2.2:+49740411 MS.gene55118:CDS
ACTTATTAAAAGAACAGTGT+GGG 0.551687 2.2:+49740598 MS.gene55118:CDS
GGACTTATAACAAATGAGAA+AGG 0.554610 2.2:+49740951 MS.gene55118:CDS
TTTCATGGAAGGATCTTGAT+CGG 0.556444 2.2:-49741045 None:intergenic
AGAAAGGTGATTCATTCGTA+TGG 0.560904 2.2:+49740967 MS.gene55118:CDS
GGGTTATTTGCCAAATAAGA+CGG 0.573634 2.2:+49740314 MS.gene55118:CDS
AAATGTTGGTTTCAAATGGG+TGG 0.580857 2.2:+49740410 MS.gene55118:CDS
GTGAAGCAAGTGGATGTGTA+TGG 0.586364 2.2:-49740470 None:intergenic
CTTATTAAAAGAACAGTGTG+GGG 0.593050 2.2:+49740599 MS.gene55118:CDS
GCAAAGTGAATCTACTGTCA+AGG 0.595204 2.2:+49740347 MS.gene55118:CDS
TGTCAAGGTTAGAAGAAGAA+GGG 0.596214 2.2:+49740362 MS.gene55118:CDS
ATGTTGGTTTCAAATGGGTG+GGG 0.598371 2.2:+49740412 MS.gene55118:CDS
GACCGTTTCTAAGGTCTGCA+AGG 0.602665 2.2:+49740502 MS.gene55118:CDS
TGATGGTTTATCCCAGTGAA+AGG 0.602908 2.2:-49740903 None:intergenic
CAATCTATTACCTTCGGTGT+AGG 0.608874 2.2:+49740930 MS.gene55118:CDS
GTATTTGATACGTTAGCAGA+AGG 0.613843 2.2:+49740177 MS.gene55118:CDS
TGTTGGTTTCAAATGGGTGG+GGG 0.614253 2.2:+49740413 MS.gene55118:CDS
TGTTATAAGTCCTACACCGA+AGG 0.619490 2.2:-49740940 None:intergenic
TCATACGCATAATAAAAGGA+TGG 0.619753 2.2:-49740747 None:intergenic
CACTTATTAAAAGAACAGTG+TGG 0.630911 2.2:+49740597 MS.gene55118:CDS
CTCTTCATAGGTGAAGCAAG+TGG 0.639442 2.2:-49740480 None:intergenic
TTATTAAAAGAACAGTGTGG+GGG 0.706691 2.2:+49740600 MS.gene55118:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACGTATATTAATATATAA+AGG - chr2.2:49739707-49739726 None:intergenic 10.0%
!! TCTTCAATAAAATAATATAA+AGG - chr2.2:49740082-49740101 None:intergenic 10.0%
!! AAAAAAAACAACTATCTCTT+AGG - chr2.2:49739581-49739600 None:intergenic 20.0%
!! AAACAATTATAATATACCTG+AGG - chr2.2:49739542-49739561 None:intergenic 20.0%
!! AATAGAACCAACATAAAAAT+AGG - chr2.2:49739605-49739624 None:intergenic 20.0%
!! AGGAAAAATTATTCCTTATT+TGG + chr2.2:49740822-49740841 MS.gene55118:CDS 20.0%
!! AGGATTAAACAAAGAATAAA+AGG - chr2.2:49740041-49740060 None:intergenic 20.0%
!! ATAGAACCAACATAAAAATA+GGG - chr2.2:49739604-49739623 None:intergenic 20.0%
!! CGTATATTAATATATAAAGG+TGG - chr2.2:49739704-49739723 None:intergenic 20.0%
!! GGAAAACAGAATAAATAAAA+AGG - chr2.2:49740061-49740080 None:intergenic 20.0%
!! TCAAAGAAACATCTTTATAA+TGG + chr2.2:49739902-49739921 MS.gene55118:intron 20.0%
!! TCTTGTTCATTAATGTATAT+AGG - chr2.2:49739751-49739770 None:intergenic 20.0%
!! TTTAATTCATCATCACAATT+TGG - chr2.2:49740141-49740160 None:intergenic 20.0%
!!! ATATATACATGATTAGTTCA+AGG - chr2.2:49739830-49739849 None:intergenic 20.0%
!!! GAAAAATTATTCCTTATTTG+GGG + chr2.2:49740824-49740843 MS.gene55118:CDS 20.0%
!!! GGAAAAATTATTCCTTATTT+GGG + chr2.2:49740823-49740842 MS.gene55118:CDS 20.0%
!!! TATATACATGATTAGTTCAA+GGG - chr2.2:49739829-49739848 None:intergenic 20.0%
!!! TTATGTTTTGTTCTTTTTTG+AGG + chr2.2:49739678-49739697 MS.gene55118:intron 20.0%
!!! TTTTGATAGATTACTTTAGA+AGG + chr2.2:49740709-49740728 MS.gene55118:CDS 20.0%
!!! TTTTTTCCCTATTTTTATGT+TGG + chr2.2:49739595-49739614 MS.gene55118:intron 20.0%
! ACTTATTAAAAGAACAGTGT+GGG + chr2.2:49740598-49740617 MS.gene55118:CDS 25.0%
! ATTCAAAGTCTTTAAATCTC+TGG - chr2.2:49740670-49740689 None:intergenic 25.0%
! GTTCATTAATGTATATAGGT+TGG - chr2.2:49739747-49739766 None:intergenic 25.0%
!! ATGGTTGTTTGAAAAGTTTT+TGG + chr2.2:49740986-49741005 MS.gene55118:CDS 25.0%
!! TCATCGACTAAAGATAAAAA+CGG + chr2.2:49740255-49740274 MS.gene55118:CDS 25.0%
!!! ATGAGATTGACTTTCATTTT+TGG - chr2.2:49739870-49739889 None:intergenic 25.0%
!!! TAATGTTGACTTCTAATTTG+TGG + chr2.2:49739958-49739977 MS.gene55118:intron 25.0%
CACTTATTAAAAGAACAGTG+TGG + chr2.2:49740597-49740616 MS.gene55118:CDS 30.0%
CTTATTAAAAGAACAGTGTG+GGG + chr2.2:49740599-49740618 MS.gene55118:CDS 30.0%
GATGAATTAAAGCCTAAGAT+TGG + chr2.2:49740150-49740169 MS.gene55118:CDS 30.0%
GGACTTATAACAAATGAGAA+AGG + chr2.2:49740951-49740970 MS.gene55118:CDS 30.0%
TACCTCATACGCATAATAAA+AGG - chr2.2:49740754-49740773 None:intergenic 30.0%
TCAAATACTTGTCCAATCTT+AGG - chr2.2:49740165-49740184 None:intergenic 30.0%
TCATACGCATAATAAAAGGA+TGG - chr2.2:49740750-49740769 None:intergenic 30.0%
TCTCTAATATGCAGAAAGAT+TGG - chr2.2:49739798-49739817 None:intergenic 30.0%
TGATCGGTTATTATAAGAGT+TGG - chr2.2:49741032-49741051 None:intergenic 30.0%
TTATTAAAAGAACAGTGTGG+GGG + chr2.2:49740600-49740619 MS.gene55118:CDS 30.0%
! ATCCTTTTATTATGCGTATG+AGG + chr2.2:49740749-49740768 MS.gene55118:CDS 30.0%
! CACACTGTTCTTTTAATAAG+TGG - chr2.2:49740599-49740618 None:intergenic 30.0%
! TTTTATTATGCGTATGAGGT+AGG + chr2.2:49740753-49740772 MS.gene55118:CDS 30.0%
!! AACTTGTTTTCAAATTCCTC+AGG + chr2.2:49739523-49739542 MS.gene55118:CDS 30.0%
!! ATGCAAATGTTGGTTTCAAA+TGG + chr2.2:49740406-49740425 MS.gene55118:CDS 30.0%
!! GAAAAGTTTTTGGAAGCAAT+GGG + chr2.2:49740996-49741015 MS.gene55118:CDS 30.0%
!! TATTTTGTTTGCTCGAAAGA+GGG + chr2.2:49740294-49740313 MS.gene55118:CDS 30.0%
!! TGAAAAGTTTTTGGAAGCAA+TGG + chr2.2:49740995-49741014 MS.gene55118:CDS 30.0%
!! TGCAAATGTTGGTTTCAAAT+GGG + chr2.2:49740407-49740426 MS.gene55118:CDS 30.0%
!!! AAATGGTTTTTTGTGCTTTC+TGG + chr2.2:49741078-49741097 MS.gene55118:CDS 30.0%
!!! TTTTTAAGATTGTTGTCCAG+TGG + chr2.2:49740005-49740024 MS.gene55118:intron 30.0%
AGAAAGGTGATTCATTCGTA+TGG + chr2.2:49740967-49740986 MS.gene55118:CDS 35.0%
AGGTAATAGATTGTCGATGA+TGG - chr2.2:49740923-49740942 None:intergenic 35.0%
CATCGACAATCTATTACCTT+CGG + chr2.2:49740924-49740943 MS.gene55118:CDS 35.0%
CATGAAAGTGGCTATAGAAA+TGG + chr2.2:49741061-49741080 MS.gene55118:CDS 35.0%
GCATGTAGTAGAGCAAATAT+TGG + chr2.2:49740558-49740577 MS.gene55118:CDS 35.0%
GGGTTATTTGCCAAATAAGA+CGG + chr2.2:49740314-49740333 MS.gene55118:CDS 35.0%
GTATTTGATACGTTAGCAGA+AGG + chr2.2:49740177-49740196 MS.gene55118:CDS 35.0%
TGTCAAGGTTAGAAGAAGAA+GGG + chr2.2:49740362-49740381 MS.gene55118:CDS 35.0%
TTTCATGGAAGGATCTTGAT+CGG - chr2.2:49741048-49741067 None:intergenic 35.0%
! AGTTCACAAAAGCGTATTAC+AGG + chr2.2:49740536-49740555 MS.gene55118:CDS 35.0%
! CATTTCTATAGCCACTTTCA+TGG - chr2.2:49741063-49741082 None:intergenic 35.0%
! TCCTTATCATCCGTCTTATT+TGG - chr2.2:49740327-49740346 None:intergenic 35.0%
! TGATTTTTGCACCTTTCACT+GGG + chr2.2:49740892-49740911 MS.gene55118:CDS 35.0%
! TTATTCCTTATTTGGGGATG+TGG + chr2.2:49740830-49740849 MS.gene55118:CDS 35.0%
! TTGATTTTTGCACCTTTCAC+TGG + chr2.2:49740891-49740910 MS.gene55118:CDS 35.0%
!! AAATGTTGGTTTCAAATGGG+TGG + chr2.2:49740410-49740429 MS.gene55118:CDS 35.0%
!! AATGTTGGTTTCAAATGGGT+GGG + chr2.2:49740411-49740430 MS.gene55118:CDS 35.0%
!! GTATTTTGTTTGCTCGAAAG+AGG + chr2.2:49740293-49740312 MS.gene55118:CDS 35.0%
!!! TTTCATTTTTGGCTTCTCAC+TGG - chr2.2:49739859-49739878 None:intergenic 35.0%
AAAAGGATCATCAGAACCAC+TGG - chr2.2:49740024-49740043 None:intergenic 40.0%
ATAAAAACGGCATGAAGCGT+TGG + chr2.2:49740268-49740287 MS.gene55118:CDS 40.0%
CAACAAGCAAATAGAACCAC+TGG - chr2.2:49739633-49739652 None:intergenic 40.0%
CCCAAAAAACATGCTTCAGT+CGG - chr2.2:49740788-49740807 None:intergenic 40.0%
CTATGAAGAGACCGTTTCTA+AGG + chr2.2:49740493-49740512 MS.gene55118:CDS 40.0%
CTGTCAAGGTTAGAAGAAGA+AGG + chr2.2:49740361-49740380 MS.gene55118:CDS 40.0%
CTTAGAAACGGTCTCTTCAT+AGG - chr2.2:49740495-49740514 None:intergenic 40.0%
GAAGGATGCAATGCAAATGT+TGG + chr2.2:49740396-49740415 MS.gene55118:CDS 40.0%
GCAAAGTGAATCTACTGTCA+AGG + chr2.2:49740347-49740366 MS.gene55118:CDS 40.0%
GCCAAATAAGACGGATGATA+AGG + chr2.2:49740323-49740342 MS.gene55118:CDS 40.0%
TCAAGATCCTTCCATGAAAG+TGG + chr2.2:49741049-49741068 MS.gene55118:CDS 40.0%
TGAAACCACATCCCCAAATA+AGG - chr2.2:49740838-49740857 None:intergenic 40.0%
TGATGGTTTATCCCAGTGAA+AGG - chr2.2:49740906-49740925 None:intergenic 40.0%
TGTGGGGGTTATGAAAATGT+TGG + chr2.2:49740615-49740634 MS.gene55118:CDS 40.0%
TGTTATAAGTCCTACACCGA+AGG - chr2.2:49740943-49740962 None:intergenic 40.0%
TTCCTTGCAGACCTTAGAAA+CGG - chr2.2:49740507-49740526 None:intergenic 40.0%
TTTGGGCAGATGGTATTTGT+AGG + chr2.2:49740802-49740821 MS.gene55118:CDS 40.0%
! AGAAGGGCTTTAACAAGAGA+AGG + chr2.2:49740378-49740397 MS.gene55118:CDS 40.0%
! CAATCTATTACCTTCGGTGT+AGG + chr2.2:49740930-49740949 MS.gene55118:CDS 40.0%
! CACGAGATACGTTTTATGGT+TGG - chr2.2:49739930-49739949 None:intergenic 40.0%
! CAGTGGTTCTATTTGCTTGT+TGG + chr2.2:49739631-49739650 MS.gene55118:intron 40.0%
! GAAGCACGAGATACGTTTTA+TGG - chr2.2:49739934-49739953 None:intergenic 40.0%
! TCTATAGCCACTTTCATGGA+AGG - chr2.2:49741059-49741078 None:intergenic 40.0%
!! AAGTTTTTGGAAGCAATGGG+TGG + chr2.2:49740999-49741018 MS.gene55118:CDS 40.0%
!! ATGTTGGTTTCAAATGGGTG+GGG + chr2.2:49740412-49740431 MS.gene55118:CDS 40.0%
!! TTGGTTCTATTGTTGTCCAG+TGG + chr2.2:49739614-49739633 MS.gene55118:intron 40.0%
!!! AAGCATGTTTTTTGGGCAGA+TGG + chr2.2:49740792-49740811 MS.gene55118:CDS 40.0%
!!! ACCGACTGAAGCATGTTTTT+TGG + chr2.2:49740784-49740803 MS.gene55118:CDS 40.0%
!!! CCGACTGAAGCATGTTTTTT+GGG + chr2.2:49740785-49740804 MS.gene55118:CDS 40.0%
CTCTTCATAGGTGAAGCAAG+TGG - chr2.2:49740483-49740502 None:intergenic 45.0%
GAAAAATGCGCAGTCTCTGT+CGG + chr2.2:49740213-49740232 MS.gene55118:CDS 45.0%
GTGAAGCAAGTGGATGTGTA+TGG - chr2.2:49740473-49740492 None:intergenic 45.0%
!! TGTTGGTTTCAAATGGGTGG+GGG + chr2.2:49740413-49740432 MS.gene55118:CDS 45.0%
!!! ATATTTATTTTGTTAATTTT+AGG + chr2.2:49740101-49740120 MS.gene55118:intron 5.0%
!! GACCGTTTCTAAGGTCTGCA+AGG + chr2.2:49740502-49740521 MS.gene55118:CDS 50.0%
GGTTTCAAATGGGTGGGGGA+AGG + chr2.2:49740417-49740436 MS.gene55118:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 49739506 49741109 49739506 ID=MS.gene55118
chr2.2 mRNA 49739506 49741109 49739506 ID=MS.gene55118.t1;Parent=MS.gene55118
chr2.2 exon 49739506 49739544 49739506 ID=MS.gene55118.t1.exon1;Parent=MS.gene55118.t1
chr2.2 CDS 49739506 49739544 49739506 ID=cds.MS.gene55118.t1;Parent=MS.gene55118.t1
chr2.2 exon 49740123 49741109 49740123 ID=MS.gene55118.t1.exon2;Parent=MS.gene55118.t1
chr2.2 CDS 49740123 49741109 49740123 ID=cds.MS.gene55118.t1;Parent=MS.gene55118.t1
Gene Sequence

>MS.gene55118

ATGGACAAAGATACATCAACTTGTTTTCAAATTCCTCAGGTATATTATAATTGTTTCTGCTGTTGTTTTGTTCCTAAGAGATAGTTGTTTTTTTTCCCTATTTTTATGTTGGTTCTATTGTTGTCCAGTGGTTCTATTTGCTTGTTGGTTCTATTTTCTTGTTTTTGTTCTTTTATGTTTTGTTCTTTTTTGAGGCCACCTTTATATATTAATATACGTTAAGATATTCTGATACAAGCCAACCTATATACATTAATGAACAAGAAAAAATATGAATGTAGCAAATATGCCAATCTTTCTGCATATTAGAGATATAAATTCCCTTGAACTAATCATGTATATATAGAAAACCAGTGAGAAGCCAAAAATGAAAGTCAATCTCATGAAAATTTAGAGTCAAAGAAACATCTTTATAATGGCTCCAACCATAAAACGTATCTCGTGCTTCTCAGTAATGTTGACTTCTAATTTGTGGATACATTATTATCATTTGATAATTTTTTTAAGATTGTTGTCCAGTGGTTCTGATGATCCTTTTATTCTTTGTTTAATCCTTTTTATTTATTCTGTTTTCCTTTATATTATTTTATTGAAGATATTTATTTTGTTAATTTTAGGAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTAAGATTGGACAAGTATTTGATACGTTAGCAGAAGGTAAAAAAATTTACGAAAAATGCGCAGTCTCTGTCGGATTTAGTGTGCGTTCATCATCATCGACTAAAGATAAAAACGGCATGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGACGGATGATAAGGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGGTTTCAAATGGGTGGGGGAAGGTAAGTATGAGATAGCTCGATTTCACGAAAGCCATACACATCCACTTGCTTCACCTATGAAGAGACCGTTTCTAAGGTCTGCAAGGAAAGTGAATTCAGTTCACAAAAGCGTATTACAGGCATGTAGTAGAGCAAATATTGGAACTTCAAAAACTTTCCACTTATTAAAAGAACAGTGTGGGGGTTATGAAAATGTTGGATGCACGCAGAGAGATCTTCAAAACTATTCCAGAGATTTAAAGACTTTGAATAAAGATTCTGATGCACATGTTTTGATAGATTACTTTAGAAGGAAGCAAGAAGTTAATCCATCCTTTTATTATGCGTATGAGGTAGGTGAAGAAGACCGACTGAAGCATGTTTTTTGGGCAGATGGTATTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACATATCAAACAAATAAATATCATTTGATTTTTGCACCTTTCACTGGGATAAACCATCATCGACAATCTATTACCTTCGGTGTAGGACTTATAACAAATGAGAAAGGTGATTCATTCGTATGGTTGTTTGAAAAGTTTTTGGAAGCAATGGGTGGACATAAGCCAACTCTTATAATAACCGATCAAGATCCTTCCATGAAAGTGGCTATAGAAATGGTTTTTTGTGCTTTCTGGTGTTTTTAG
Protein sequence

>MS.gene55118.t1

MDKDTSTCFQIPQEYECVPNCDDELKPKIGQVFDTLAEGKKIYEKCAVSVGFSVRSSSSTKDKNGMKRWKYFVCSKEGYLPNKTDDKEQSESTVKVRRRRALTREGCNANVGFKWVGEGKYEIARFHESHTHPLASPMKRPFLRSARKVNSVHKSVLQACSRANIGTSKTFHLLKEQCGGYENVGCTQRDLQNYSRDLKTLNKDSDAHVLIDYFRRKQEVNPSFYYAYEVGEEDRLKHVFWADGICRKNYSLFGDVVSFDTTYQTNKYHLIFAPFTGINHHRQSITFGVGLITNEKGDSFVWLFEKFLEAMGGHKPTLIITDQDPSMKVAIEMVFCAFWCF