Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55181.t1 | XP_003616637.2 | 59.8 | 323 | 46 | 3 | 1 | 239 | 464 | 786 | 4.10E-89 | 337.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55181.t1 | Q9LY50 | 40.6 | 320 | 97 | 4 | 13 | 239 | 477 | 796 | 6.7e-56 | 218.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55181.t1 | G7KH13 | 59.8 | 323 | 46 | 3 | 1 | 239 | 464 | 786 | 2.9e-89 | 337.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55181.t1 | MTR_5g082630 | 59.752 | 323 | 46 | 3 | 1 | 239 | 464 | 786 | 6.12e-109 | 332 |
MS.gene55181.t1 | MTR_3g070800 | 48.923 | 325 | 80 | 5 | 1 | 239 | 443 | 767 | 1.93e-80 | 256 |
MS.gene55181.t1 | MTR_3g464080 | 42.492 | 313 | 94 | 4 | 12 | 239 | 474 | 785 | 6.13e-70 | 229 |
MS.gene55181.t1 | MTR_4g035180 | 33.094 | 278 | 132 | 6 | 1 | 237 | 459 | 723 | 1.13e-34 | 131 |
MS.gene55181.t1 | MTR_4g067230 | 29.180 | 305 | 122 | 7 | 16 | 234 | 497 | 793 | 1.29e-28 | 114 |
MS.gene55181.t1 | MTR_2g098910 | 28.197 | 305 | 129 | 6 | 16 | 239 | 506 | 801 | 1.54e-28 | 113 |
MS.gene55181.t1 | MTR_1g064560 | 28.800 | 250 | 109 | 7 | 6 | 197 | 486 | 724 | 4.12e-23 | 97.8 |
MS.gene55181.t1 | MTR_5g047110 | 28.421 | 285 | 135 | 9 | 19 | 239 | 506 | 785 | 8.05e-21 | 91.3 |
MS.gene55181.t1 | MTR_1g100110 | 28.169 | 284 | 127 | 9 | 22 | 239 | 490 | 762 | 7.37e-20 | 88.6 |
MS.gene55181.t1 | MTR_2g006910 | 26.462 | 325 | 138 | 9 | 2 | 234 | 281 | 596 | 3.74e-19 | 86.3 |
MS.gene55181.t1 | MTR_2g006910 | 26.462 | 325 | 138 | 9 | 2 | 234 | 281 | 596 | 3.99e-19 | 86.3 |
MS.gene55181.t1 | MTR_3g088750 | 25.926 | 297 | 124 | 7 | 20 | 234 | 414 | 696 | 5.52e-19 | 85.9 |
MS.gene55181.t1 | MTR_8g059605 | 25.484 | 310 | 144 | 7 | 3 | 234 | 437 | 737 | 6.17e-19 | 85.9 |
MS.gene55181.t1 | MTR_7g015390 | 26.019 | 319 | 143 | 8 | 3 | 239 | 504 | 811 | 6.44e-19 | 85.9 |
MS.gene55181.t1 | MTR_8g059605 | 25.484 | 310 | 144 | 7 | 3 | 234 | 632 | 932 | 6.54e-19 | 85.9 |
MS.gene55181.t1 | MTR_2g084120 | 25.338 | 296 | 134 | 9 | 20 | 233 | 80 | 370 | 9.05e-19 | 84.7 |
MS.gene55181.t1 | MTR_5g047060 | 26.087 | 299 | 139 | 7 | 19 | 239 | 507 | 801 | 1.46e-18 | 84.7 |
MS.gene55181.t1 | MTR_5g086040 | 26.984 | 252 | 100 | 8 | 1 | 175 | 1 | 245 | 4.99e-18 | 82.0 |
MS.gene55181.t1 | MTR_5g086040 | 26.984 | 252 | 100 | 8 | 1 | 175 | 108 | 352 | 7.95e-18 | 82.0 |
MS.gene55181.t1 | MTR_5g086040 | 27.273 | 253 | 100 | 8 | 1 | 176 | 298 | 543 | 8.72e-18 | 82.4 |
MS.gene55181.t1 | MTR_7g015670 | 24.375 | 320 | 148 | 9 | 3 | 239 | 506 | 814 | 1.20e-17 | 82.0 |
MS.gene55181.t1 | MTR_5g086040 | 26.984 | 252 | 100 | 8 | 1 | 175 | 260 | 504 | 1.75e-17 | 81.3 |
MS.gene55181.t1 | MTR_4g061570 | 27.473 | 273 | 122 | 9 | 18 | 235 | 83 | 334 | 7.82e-17 | 79.0 |
MS.gene55181.t1 | MTR_8g014500 | 28.916 | 249 | 84 | 8 | 15 | 177 | 340 | 581 | 9.04e-17 | 79.3 |
MS.gene55181.t1 | MTR_3g011630 | 24.221 | 289 | 136 | 5 | 18 | 233 | 40 | 318 | 1.19e-16 | 78.6 |
MS.gene55181.t1 | MTR_1g104555 | 26.217 | 267 | 138 | 8 | 18 | 234 | 404 | 661 | 2.93e-16 | 77.8 |
MS.gene55181.t1 | MTR_8g014500 | 27.511 | 229 | 81 | 6 | 15 | 164 | 340 | 562 | 3.60e-16 | 77.4 |
MS.gene55181.t1 | MTR_8g014500 | 27.511 | 229 | 81 | 6 | 15 | 164 | 340 | 562 | 4.03e-16 | 77.4 |
MS.gene55181.t1 | MTR_3g067765 | 26.728 | 217 | 120 | 7 | 49 | 234 | 97 | 305 | 9.85e-16 | 75.1 |
MS.gene55181.t1 | MTR_2g022810 | 25.253 | 297 | 129 | 8 | 20 | 233 | 67 | 353 | 1.36e-15 | 75.5 |
MS.gene55181.t1 | MTR_7g015760 | 26.244 | 221 | 86 | 6 | 4 | 153 | 7 | 221 | 2.52e-15 | 74.3 |
MS.gene55181.t1 | MTR_8g020920 | 24.510 | 306 | 135 | 7 | 20 | 239 | 67 | 362 | 4.66e-15 | 74.3 |
MS.gene55181.t1 | MTR_5g019040 | 32.642 | 193 | 106 | 8 | 59 | 233 | 375 | 561 | 1.36e-14 | 72.8 |
MS.gene55181.t1 | MTR_7g015750 | 25.926 | 243 | 80 | 8 | 2 | 153 | 16 | 249 | 5.87e-14 | 70.5 |
MS.gene55181.t1 | MTR_8g088780 | 24.843 | 318 | 149 | 9 | 4 | 234 | 283 | 597 | 8.66e-14 | 70.5 |
MS.gene55181.t1 | MTR_4g109010 | 22.697 | 304 | 130 | 9 | 20 | 237 | 525 | 809 | 1.04e-13 | 70.5 |
MS.gene55181.t1 | MTR_7g018130 | 26.582 | 237 | 80 | 8 | 4 | 152 | 7 | 237 | 1.38e-13 | 69.3 |
MS.gene55181.t1 | MTR_8g042370 | 25.200 | 250 | 104 | 7 | 18 | 194 | 98 | 337 | 8.10e-13 | 67.4 |
MS.gene55181.t1 | MTR_1g010260 | 24.839 | 310 | 117 | 8 | 3 | 234 | 400 | 671 | 8.98e-13 | 67.8 |
MS.gene55181.t1 | MTR_1g027660 | 24.573 | 293 | 135 | 8 | 20 | 234 | 376 | 660 | 2.75e-12 | 66.2 |
MS.gene55181.t1 | MTR_1g010240 | 26.217 | 267 | 114 | 8 | 3 | 234 | 367 | 585 | 5.28e-12 | 65.5 |
MS.gene55181.t1 | MTR_1g027640 | 26.222 | 225 | 123 | 7 | 45 | 234 | 472 | 688 | 7.71e-12 | 65.1 |
MS.gene55181.t1 | MTR_7g015620 | 37.615 | 109 | 52 | 3 | 9 | 108 | 506 | 607 | 1.32e-11 | 64.3 |
MS.gene55181.t1 | MTR_4g092070 | 28.959 | 221 | 104 | 10 | 49 | 233 | 178 | 381 | 1.98e-11 | 63.5 |
MS.gene55181.t1 | MTR_1g009270 | 29.286 | 140 | 62 | 4 | 49 | 157 | 403 | 536 | 4.15e-11 | 62.8 |
MS.gene55181.t1 | MTR_3g019120 | 26.601 | 203 | 87 | 5 | 20 | 160 | 176 | 378 | 4.31e-11 | 62.4 |
MS.gene55181.t1 | MTR_3g019120 | 26.601 | 203 | 87 | 5 | 20 | 160 | 216 | 418 | 4.88e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55181.t1 | AT3G55950 | 42.470 | 332 | 98 | 4 | 1 | 239 | 465 | 796 | 1.31e-68 | 225 |
MS.gene55181.t1 | AT3G59420 | 28.289 | 304 | 128 | 5 | 16 | 238 | 496 | 790 | 1.01e-27 | 111 |
MS.gene55181.t1 | AT5G47850 | 33.188 | 229 | 105 | 4 | 49 | 238 | 515 | 734 | 3.17e-27 | 109 |
MS.gene55181.t1 | AT2G39180 | 29.339 | 242 | 91 | 7 | 20 | 197 | 507 | 732 | 2.95e-23 | 98.6 |
MS.gene55181.t1 | AT1G54820 | 26.910 | 301 | 130 | 9 | 18 | 233 | 133 | 428 | 1.43e-20 | 90.1 |
MS.gene55181.t1 | AT3G55450 | 25.574 | 305 | 131 | 8 | 18 | 233 | 84 | 381 | 2.24e-20 | 89.4 |
MS.gene55181.t1 | AT3G09780 | 30.252 | 238 | 98 | 7 | 17 | 197 | 505 | 731 | 2.35e-20 | 90.1 |
MS.gene55181.t1 | AT3G55450 | 25.574 | 305 | 131 | 8 | 18 | 233 | 47 | 344 | 2.35e-20 | 89.0 |
MS.gene55181.t1 | AT1G67720 | 26.846 | 298 | 129 | 8 | 20 | 239 | 596 | 882 | 3.17e-20 | 89.7 |
MS.gene55181.t1 | AT4G39110 | 27.723 | 303 | 121 | 9 | 20 | 239 | 514 | 801 | 7.02e-20 | 88.6 |
MS.gene55181.t1 | AT1G54820 | 28.458 | 253 | 92 | 8 | 18 | 185 | 133 | 381 | 3.85e-18 | 82.8 |
MS.gene55181.t1 | AT1G29750 | 25.484 | 310 | 143 | 9 | 3 | 234 | 654 | 953 | 1.01e-17 | 82.4 |
MS.gene55181.t1 | AT1G29750 | 25.484 | 310 | 143 | 9 | 3 | 234 | 639 | 938 | 1.02e-17 | 82.4 |
MS.gene55181.t1 | AT3G19300 | 29.730 | 222 | 98 | 9 | 50 | 230 | 387 | 591 | 3.07e-17 | 80.9 |
MS.gene55181.t1 | AT5G28680 | 26.087 | 299 | 132 | 9 | 20 | 239 | 509 | 797 | 3.83e-17 | 80.5 |
MS.gene55181.t1 | AT5G28680 | 26.087 | 299 | 132 | 9 | 20 | 239 | 509 | 797 | 3.83e-17 | 80.5 |
MS.gene55181.t1 | AT5G61350 | 27.193 | 228 | 123 | 6 | 49 | 239 | 585 | 806 | 8.21e-17 | 79.7 |
MS.gene55181.t1 | AT3G04690 | 26.246 | 301 | 129 | 9 | 20 | 239 | 505 | 793 | 1.24e-16 | 79.3 |
MS.gene55181.t1 | AT2G19230 | 28.378 | 222 | 113 | 8 | 49 | 234 | 629 | 840 | 5.94e-16 | 77.0 |
MS.gene55181.t1 | AT2G19230 | 28.378 | 222 | 113 | 8 | 49 | 234 | 628 | 839 | 6.63e-16 | 77.0 |
MS.gene55181.t1 | AT2G07180 | 24.585 | 301 | 131 | 7 | 20 | 234 | 78 | 368 | 8.67e-16 | 76.3 |
MS.gene55181.t1 | AT2G07180 | 24.585 | 301 | 131 | 7 | 20 | 234 | 78 | 368 | 8.67e-16 | 76.3 |
MS.gene55181.t1 | AT5G46080 | 25.806 | 310 | 124 | 11 | 12 | 233 | 33 | 324 | 1.28e-15 | 75.1 |
MS.gene55181.t1 | AT1G11050 | 25.581 | 301 | 135 | 7 | 20 | 234 | 283 | 580 | 1.70e-15 | 75.9 |
MS.gene55181.t1 | AT1G79680 | 24.415 | 299 | 138 | 9 | 15 | 234 | 416 | 705 | 2.62e-15 | 75.1 |
MS.gene55181.t1 | AT4G29990 | 25.893 | 224 | 115 | 6 | 49 | 234 | 633 | 843 | 1.76e-14 | 72.8 |
MS.gene55181.t1 | AT1G51890 | 25.446 | 224 | 119 | 7 | 49 | 235 | 565 | 777 | 1.28e-13 | 70.1 |
MS.gene55181.t1 | AT1G51890 | 25.446 | 224 | 119 | 7 | 49 | 235 | 357 | 569 | 1.41e-13 | 70.1 |
MS.gene55181.t1 | AT1G51890 | 25.446 | 224 | 119 | 7 | 49 | 235 | 629 | 841 | 1.75e-13 | 69.7 |
MS.gene55181.t1 | AT1G16130 | 23.490 | 298 | 137 | 9 | 17 | 234 | 401 | 687 | 2.20e-12 | 66.6 |
MS.gene55181.t1 | AT1G16150 | 23.490 | 298 | 137 | 10 | 17 | 234 | 409 | 695 | 6.48e-12 | 65.1 |
MS.gene55181.t1 | AT1G51890 | 24.481 | 241 | 122 | 7 | 49 | 235 | 629 | 863 | 7.60e-12 | 65.1 |
Find 43 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCTCCTTTCATGATTAT+TGG | 0.143018 | 5.2:+70608199 | None:intergenic |
ATAGTAGTTTATTGAATTCT+TGG | 0.171769 | 5.2:-70608595 | MS.gene55181:CDS |
ACAGCGAATAGTGATGTTTA+TGG | 0.256697 | 5.2:-70608322 | MS.gene55181:CDS |
TCGATGGAACCGTGTGATTA+TGG | 0.272423 | 5.2:+70608522 | None:intergenic |
GAAAAGATAGGCAAACAATA+AGG | 0.283760 | 5.2:-70608075 | MS.gene55181:CDS |
ACATTAAATCCGGTAACATT+TGG | 0.303977 | 5.2:+70608349 | None:intergenic |
AAGGGATACTGTGGCTAGTT+TGG | 0.310277 | 5.2:-70608056 | MS.gene55181:CDS |
AATAGTGATGTTTATGGTCT+TGG | 0.335266 | 5.2:-70608316 | MS.gene55181:CDS |
ATAATCAAGAATGATGAAAA+TGG | 0.342743 | 5.2:-70608256 | MS.gene55181:CDS |
CATTAAATCCGGTAACATTT+GGG | 0.346747 | 5.2:+70608350 | None:intergenic |
TGCAATGCATTGTGTGCATT+TGG | 0.379439 | 5.2:-70608101 | MS.gene55181:CDS |
ATAGTGATGTTTATGGTCTT+GGG | 0.386155 | 5.2:-70608315 | MS.gene55181:CDS |
CGCTGTTAATACATTAAATC+CGG | 0.386187 | 5.2:+70608339 | None:intergenic |
TTCTCACTTGAGAACAAGAT+TGG | 0.386390 | 5.2:-70608879 | MS.gene55181:CDS |
TTCAATGTATGATCATTTGC+AGG | 0.389763 | 5.2:-70608639 | MS.gene55181:CDS |
GTGAACTCTTCTGACCTATC+TGG | 0.390157 | 5.2:+70608933 | None:intergenic |
CTAGAATTATTAACAGGAAA+AGG | 0.394745 | 5.2:-70608283 | MS.gene55181:CDS |
ACATCGATCCCAAATGTTAC+CGG | 0.437121 | 5.2:-70608358 | MS.gene55181:CDS |
TATTGAATTCTTGGAAAATG+AGG | 0.452817 | 5.2:-70608586 | MS.gene55181:CDS |
AAAAGATAGGCAAACAATAA+GGG | 0.453759 | 5.2:-70608074 | MS.gene55181:CDS |
AAGATTGGTGCTGGAAGTTA+TGG | 0.476688 | 5.2:-70608864 | MS.gene55181:CDS |
CTCAAGTGAGAAATTGTTTG+TGG | 0.482381 | 5.2:+70608890 | None:intergenic |
CTTGAGAACAAGATTGGTGC+TGG | 0.482427 | 5.2:-70608873 | MS.gene55181:CDS |
AATGAGGATCAAAATTGTGT+TGG | 0.512914 | 5.2:-70608570 | MS.gene55181:CDS |
AATTGTGTTGGATCCTCCGC+GGG | 0.515242 | 5.2:-70608558 | MS.gene55181:CDS |
TGCATTTGGAAGGAAAAGAT+AGG | 0.523933 | 5.2:-70608087 | MS.gene55181:CDS |
GTGTATGAGTTCATGAAGAA+TGG | 0.542695 | 5.2:-70608662 | MS.gene55181:CDS |
CGTCAACAAAACATCCAGAT+AGG | 0.554779 | 5.2:-70608947 | MS.gene55181:CDS |
GATGAATAAAACAGAAGCTG+TGG | 0.559706 | 5.2:-70608140 | MS.gene55181:CDS |
TACAAACCGACGTAAGCAGC+AGG | 0.560750 | 5.2:-70608392 | MS.gene55181:CDS |
GTTTGTGGCAGCATTTAGCT+CGG | 0.575001 | 5.2:+70608905 | None:intergenic |
GCAGTGCCAATAATCATGAA+AGG | 0.579666 | 5.2:-70608205 | MS.gene55181:CDS |
ACTGTTCCTGCTGCTTACGT+CGG | 0.584109 | 5.2:+70608386 | None:intergenic |
TAGTGATGTTTATGGTCTTG+GGG | 0.597124 | 5.2:-70608314 | MS.gene55181:CDS |
ATGCATTGTGTGCATTTGGA+AGG | 0.598416 | 5.2:-70608097 | MS.gene55181:CDS |
ATAATGAGGCGTCAGAGAAG+CGG | 0.610029 | 5.2:-70608975 | MS.gene55181:CDS |
ATCAAGAATGATGAAAATGG+AGG | 0.636436 | 5.2:-70608253 | MS.gene55181:CDS |
GCAAACAATAAGGGATACTG+TGG | 0.642932 | 5.2:-70608065 | MS.gene55181:CDS |
AAATTGTGTTGGATCCTCCG+CGG | 0.699369 | 5.2:-70608559 | MS.gene55181:CDS |
TGAGTATCTCCATAATCACA+CGG | 0.716369 | 5.2:-70608531 | MS.gene55181:intron |
AGATACTCAATTCCCCGCGG+AGG | 0.717917 | 5.2:+70608545 | None:intergenic |
ATTGTGTTGGATCCTCCGCG+GGG | 0.770648 | 5.2:-70608557 | MS.gene55181:CDS |
TGGAGATACTCAATTCCCCG+CGG | 0.775504 | 5.2:+70608542 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATCAAGAATGATGAAAA+TGG | - | chr5.2:70608752-70608771 | MS.gene55181:intron | 20.0% |
!! | ATAGTAGTTTATTGAATTCT+TGG | - | chr5.2:70608413-70608432 | MS.gene55181:intron | 20.0% |
!!! | GTTTTACTAGAATTATTAAC+AGG | - | chr5.2:70608719-70608738 | MS.gene55181:intron | 20.0% |
! | AAAAGATAGGCAAACAATAA+GGG | - | chr5.2:70608934-70608953 | MS.gene55181:CDS | 25.0% |
! | AATTCTCCTTTCATGATTAT+TGG | + | chr5.2:70608812-70608831 | None:intergenic | 25.0% |
! | CTAGAATTATTAACAGGAAA+AGG | - | chr5.2:70608725-70608744 | MS.gene55181:intron | 25.0% |
! | TATTGAATTCTTGGAAAATG+AGG | - | chr5.2:70608422-70608441 | MS.gene55181:intron | 25.0% |
! | TGAAAAAGATGAAAGACTAT+TGG | - | chr5.2:70608324-70608343 | MS.gene55181:CDS | 25.0% |
!! | AGGAGAATTGATGAAATTTT+TGG | - | chr5.2:70608823-70608842 | MS.gene55181:intron | 25.0% |
!!! | GATGAAAGTTTTTCAATAGA+AGG | - | chr5.2:70608222-70608241 | MS.gene55181:CDS | 25.0% |
AAATGAGGCAACAATCAAAA+GGG | - | chr5.2:70608183-70608202 | MS.gene55181:CDS | 30.0% | |
AAGCATTTGGTTAGATTAGT+CGG | - | chr5.2:70608292-70608311 | MS.gene55181:CDS | 30.0% | |
AATAGTGATGTTTATGGTCT+TGG | - | chr5.2:70608692-70608711 | MS.gene55181:CDS | 30.0% | |
AATGAGGATCAAAATTGTGT+TGG | - | chr5.2:70608438-70608457 | MS.gene55181:intron | 30.0% | |
ACATTAAATCCGGTAACATT+TGG | + | chr5.2:70608662-70608681 | None:intergenic | 30.0% | |
ATAGTGATGTTTATGGTCTT+GGG | - | chr5.2:70608693-70608712 | MS.gene55181:CDS | 30.0% | |
ATCAAGAATGATGAAAATGG+AGG | - | chr5.2:70608755-70608774 | MS.gene55181:intron | 30.0% | |
CATTAAATCCGGTAACATTT+GGG | + | chr5.2:70608661-70608680 | None:intergenic | 30.0% | |
CGCTGTTAATACATTAAATC+CGG | + | chr5.2:70608672-70608691 | None:intergenic | 30.0% | |
CGGATTATCAATTATGAGTT+CGG | - | chr5.2:70608579-70608598 | MS.gene55181:CDS | 30.0% | |
GAAAAGATAGGCAAACAATA+AGG | - | chr5.2:70608933-70608952 | MS.gene55181:CDS | 30.0% | |
GCATGATAAAAAGGCTAATT+CGG | + | chr5.2:70608263-70608282 | None:intergenic | 30.0% | |
TAAATGAGGCAACAATCAAA+AGG | - | chr5.2:70608182-70608201 | MS.gene55181:CDS | 30.0% | |
TTCAATGTATGATCATTTGC+AGG | - | chr5.2:70608369-70608388 | MS.gene55181:CDS | 30.0% | |
!! | GTTGTTTTCAAAGGTAAATG+AGG | - | chr5.2:70608168-70608187 | MS.gene55181:CDS | 30.0% |
!!! | AGTTATGGTGTTGTTTTCAA+AGG | - | chr5.2:70608159-70608178 | MS.gene55181:CDS | 30.0% |
AATGAGGCAACAATCAAAAG+GGG | - | chr5.2:70608184-70608203 | MS.gene55181:CDS | 35.0% | |
ACAGCGAATAGTGATGTTTA+TGG | - | chr5.2:70608686-70608705 | MS.gene55181:CDS | 35.0% | |
ACATTCTCATTGACGTGAAT+TGG | - | chr5.2:70608536-70608555 | MS.gene55181:CDS | 35.0% | |
ATGTCTCGATGAATTATCGA+TGG | + | chr5.2:70608505-70608524 | None:intergenic | 35.0% | |
CTCAAGTGAGAAATTGTTTG+TGG | + | chr5.2:70608121-70608140 | None:intergenic | 35.0% | |
GATGAATAAAACAGAAGCTG+TGG | - | chr5.2:70608868-70608887 | MS.gene55181:CDS | 35.0% | |
GTGATGTAGGCATGATAAAA+AGG | + | chr5.2:70608272-70608291 | None:intergenic | 35.0% | |
GTGTATGAGTTCATGAAGAA+TGG | - | chr5.2:70608346-70608365 | MS.gene55181:CDS | 35.0% | |
TAACCAAATGCTTGTGATGT+AGG | + | chr5.2:70608285-70608304 | None:intergenic | 35.0% | |
TGAGTATCTCCATAATCACA+CGG | - | chr5.2:70608477-70608496 | MS.gene55181:intron | 35.0% | |
TGCATTTGGAAGGAAAAGAT+AGG | - | chr5.2:70608921-70608940 | MS.gene55181:CDS | 35.0% | |
TTCTCACTTGAGAACAAGAT+TGG | - | chr5.2:70608129-70608148 | MS.gene55181:CDS | 35.0% | |
! | TAGTGATGTTTATGGTCTTG+GGG | - | chr5.2:70608694-70608713 | MS.gene55181:CDS | 35.0% |
!! | GCTTCTGTTTTATTCATCTC+TGG | + | chr5.2:70608866-70608885 | None:intergenic | 35.0% |
!! | TCTGTTTTATTCATCTCTGG+TGG | + | chr5.2:70608863-70608882 | None:intergenic | 35.0% |
ACATCGATCCCAAATGTTAC+CGG | - | chr5.2:70608650-70608669 | MS.gene55181:CDS | 40.0% | |
ATGCATTGTGTGCATTTGGA+AGG | - | chr5.2:70608911-70608930 | MS.gene55181:CDS | 40.0% | |
ATGCCTACATCACAAGCATT+TGG | - | chr5.2:70608279-70608298 | MS.gene55181:CDS | 40.0% | |
CGTCAACAAAACATCCAGAT+AGG | - | chr5.2:70608061-70608080 | MS.gene55181:CDS | 40.0% | |
GCAAACAATAAGGGATACTG+TGG | - | chr5.2:70608943-70608962 | MS.gene55181:CDS | 40.0% | |
GCAGTGCCAATAATCATGAA+AGG | - | chr5.2:70608803-70608822 | MS.gene55181:intron | 40.0% | |
TCTCATTGACGTGAATTGGA+TGG | - | chr5.2:70608540-70608559 | MS.gene55181:CDS | 40.0% | |
TGCAATGCATTGTGTGCATT+TGG | - | chr5.2:70608907-70608926 | MS.gene55181:CDS | 40.0% | |
! | ATGGCTAGAGTGTCTGATAT+CGG | - | chr5.2:70608559-70608578 | MS.gene55181:CDS | 40.0% |
!! | AAGATTGGTGCTGGAAGTTA+TGG | - | chr5.2:70608144-70608163 | MS.gene55181:CDS | 40.0% |
AAATTGTGTTGGATCCTCCG+CGG | - | chr5.2:70608449-70608468 | MS.gene55181:intron | 45.0% | |
CTTGAGAACAAGATTGGTGC+TGG | - | chr5.2:70608135-70608154 | MS.gene55181:CDS | 45.0% | |
GTGAACTCTTCTGACCTATC+TGG | + | chr5.2:70608078-70608097 | None:intergenic | 45.0% | |
GTTTGTGGCAGCATTTAGCT+CGG | + | chr5.2:70608106-70608125 | None:intergenic | 45.0% | |
TCGATGGAACCGTGTGATTA+TGG | + | chr5.2:70608489-70608508 | None:intergenic | 45.0% | |
! | AAGGGATACTGTGGCTAGTT+TGG | - | chr5.2:70608952-70608971 | MS.gene55181:CDS | 45.0% |
AATTGTGTTGGATCCTCCGC+GGG | - | chr5.2:70608450-70608469 | MS.gene55181:intron | 50.0% | |
TACAAACCGACGTAAGCAGC+AGG | - | chr5.2:70608616-70608635 | MS.gene55181:CDS | 50.0% | |
TGGAGATACTCAATTCCCCG+CGG | + | chr5.2:70608469-70608488 | None:intergenic | 50.0% | |
! | ACTGTTCCTGCTGCTTACGT+CGG | + | chr5.2:70608625-70608644 | None:intergenic | 50.0% |
AGATACTCAATTCCCCGCGG+AGG | + | chr5.2:70608466-70608485 | None:intergenic | 55.0% | |
ATTGTGTTGGATCCTCCGCG+GGG | - | chr5.2:70608451-70608470 | MS.gene55181:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 70608036 | 70608994 | 70608036 | ID=MS.gene55181 |
chr5.2 | mRNA | 70608036 | 70608994 | 70608036 | ID=MS.gene55181.t1;Parent=MS.gene55181 |
chr5.2 | exon | 70608850 | 70608994 | 70608850 | ID=MS.gene55181.t1.exon1;Parent=MS.gene55181.t1 |
chr5.2 | CDS | 70608850 | 70608994 | 70608850 | ID=cds.MS.gene55181.t1;Parent=MS.gene55181.t1 |
chr5.2 | exon | 70608532 | 70608719 | 70608532 | ID=MS.gene55181.t1.exon2;Parent=MS.gene55181.t1 |
chr5.2 | CDS | 70608532 | 70608719 | 70608532 | ID=cds.MS.gene55181.t1;Parent=MS.gene55181.t1 |
chr5.2 | exon | 70608036 | 70608422 | 70608036 | ID=MS.gene55181.t1.exon3;Parent=MS.gene55181.t1 |
chr5.2 | CDS | 70608036 | 70608422 | 70608036 | ID=cds.MS.gene55181.t1;Parent=MS.gene55181.t1 |
Gene Sequence |
Protein sequence |