Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55222.t1 | RHN55381.1 | 98.2 | 457 | 8 | 0 | 1 | 457 | 1 | 457 | 4.50E-270 | 939.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55222.t1 | Q9FMS5 | 49.4 | 476 | 207 | 11 | 1 | 457 | 212 | 672 | 9.2e-123 | 441.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55222.t1 | G7KF85 | 98.2 | 457 | 8 | 0 | 1 | 457 | 210 | 666 | 3.2e-270 | 939.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene55222.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55222.t1 | MTR_5g040700 | 98.249 | 457 | 8 | 0 | 1 | 457 | 210 | 666 | 0.0 | 933 |
| MS.gene55222.t1 | MTR_5g077750 | 32.549 | 510 | 255 | 13 | 1 | 446 | 193 | 677 | 6.24e-74 | 246 |
| MS.gene55222.t1 | MTR_4g035550 | 30.213 | 470 | 271 | 14 | 1 | 450 | 237 | 669 | 1.53e-54 | 194 |
| MS.gene55222.t1 | MTR_1g076990 | 29.258 | 458 | 284 | 14 | 1 | 447 | 70 | 498 | 5.11e-52 | 184 |
| MS.gene55222.t1 | MTR_1g076990 | 29.194 | 459 | 285 | 14 | 1 | 448 | 98 | 527 | 1.34e-51 | 183 |
| MS.gene55222.t1 | MTR_1g076990 | 29.194 | 459 | 285 | 14 | 1 | 448 | 240 | 669 | 9.48e-51 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55222.t1 | AT5G22260 | 49.580 | 476 | 206 | 11 | 1 | 457 | 212 | 672 | 1.47e-148 | 439 |
| MS.gene55222.t1 | AT1G66170 | 31.504 | 492 | 270 | 13 | 1 | 451 | 193 | 658 | 1.56e-60 | 210 |
| MS.gene55222.t1 | AT2G01810 | 26.614 | 511 | 283 | 14 | 1 | 446 | 199 | 682 | 1.71e-50 | 182 |
| MS.gene55222.t1 | AT1G33420 | 28.782 | 476 | 266 | 15 | 1 | 457 | 132 | 553 | 6.04e-50 | 179 |
| MS.gene55222.t1 | AT1G33420 | 28.817 | 465 | 261 | 14 | 1 | 446 | 237 | 650 | 2.63e-49 | 179 |
| MS.gene55222.t1 | AT2G07714 | 41.414 | 99 | 51 | 2 | 1 | 94 | 27 | 123 | 1.25e-15 | 75.9 |
Find 98 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAATCTATTGGGGTTTA+AGG | 0.147844 | 5.2:-30587467 | MS.gene55222:CDS |
| CATGCTTCTTATTGCTTCTA+TGG | 0.182195 | 5.2:+30588361 | None:intergenic |
| CACTCCACAATTCCCTTCTT+TGG | 0.188498 | 5.2:+30587291 | None:intergenic |
| AGAAATTCTGACCCTATAAT+TGG | 0.198934 | 5.2:+30587756 | None:intergenic |
| CCACGTTGTTGGAAACTATT+TGG | 0.229126 | 5.2:-30587976 | MS.gene55222:CDS |
| ATTGACACAAAACCAATTAT+AGG | 0.232727 | 5.2:-30587768 | MS.gene55222:CDS |
| TGGTACCTTTGGAAGATTAA+TGG | 0.241935 | 5.2:+30588290 | None:intergenic |
| TCAAATAATACTCATGATTA+TGG | 0.281699 | 5.2:+30587583 | None:intergenic |
| TGAGCCATGGTTTGGTCGTT+GGG | 0.296656 | 5.2:-30588438 | MS.gene55222:CDS |
| ATCACTCTCTTGTCACCCTT+GGG | 0.305190 | 5.2:-30588256 | MS.gene55222:CDS |
| CAGAAAGTGTTTGGTACCTT+TGG | 0.317798 | 5.2:+30588279 | None:intergenic |
| TGAGGAACTTCTTCATCATT+TGG | 0.319257 | 5.2:+30587180 | None:intergenic |
| GATTAATGGGATTTCATGAT+TGG | 0.324820 | 5.2:+30588304 | None:intergenic |
| ATTGTCGTTGGTCTCCTAAA+AGG | 0.326457 | 5.2:-30588142 | MS.gene55222:CDS |
| AAATTTGGTCGAGGATGTTT+TGG | 0.327870 | 5.2:-30588410 | MS.gene55222:CDS |
| GGTACCTTTGGAAGATTAAT+GGG | 0.334887 | 5.2:+30588291 | None:intergenic |
| CTTGTGATATTTGTGAAATT+TGG | 0.339612 | 5.2:-30587227 | MS.gene55222:CDS |
| GTTCCTTTGCAAGTTGAGTT+TGG | 0.340595 | 5.2:-30587666 | MS.gene55222:CDS |
| TACTCATAACCAACCCTTCA+TGG | 0.346998 | 5.2:+30587880 | None:intergenic |
| TTGACACAAAACCAATTATA+GGG | 0.352156 | 5.2:-30587767 | MS.gene55222:CDS |
| GTGAAATTTGGCAACATACT+AGG | 0.366008 | 5.2:-30587215 | MS.gene55222:CDS |
| GGTCGTTGGGGATACAAATT+TGG | 0.369438 | 5.2:-30588425 | MS.gene55222:CDS |
| TATCGGAGATACTGGTTTGT+TGG | 0.370000 | 5.2:-30588024 | MS.gene55222:CDS |
| AAATATCTTATCAAAGACTA+TGG | 0.371766 | 5.2:-30587693 | MS.gene55222:CDS |
| CGCGCTTATATCGGAGATAC+TGG | 0.381852 | 5.2:-30588032 | MS.gene55222:CDS |
| GGGAATTTGATGAATGCAAA+AGG | 0.384193 | 5.2:-30587423 | MS.gene55222:CDS |
| GCATTCATCAAATTCCCATT+TGG | 0.391057 | 5.2:+30587429 | None:intergenic |
| TTAAGGAATGTTAACAATGT+AGG | 0.391672 | 5.2:-30587606 | MS.gene55222:CDS |
| AGGTTGGCATGGTGGTGAAA+TGG | 0.392045 | 5.2:-30587349 | MS.gene55222:CDS |
| GACTAAGGCGCTTGTGTTGA+AGG | 0.393851 | 5.2:+30588172 | None:intergenic |
| GGTTGGCATGGTGGTGAAAT+GGG | 0.394662 | 5.2:-30587348 | MS.gene55222:CDS |
| TAGTAGTAGTAATAAAGTTA+AGG | 0.409211 | 5.2:-30587856 | MS.gene55222:CDS |
| GATCACTCTCTTGTCACCCT+TGG | 0.414717 | 5.2:-30588257 | MS.gene55222:CDS |
| ACGACAATTTGTTTCGACTA+AGG | 0.424799 | 5.2:+30588157 | None:intergenic |
| TCATATAGTTATGGCAAAGA+AGG | 0.438373 | 5.2:+30587114 | None:intergenic |
| TTCAATGTGATACATTCATA+AGG | 0.439527 | 5.2:+30587540 | None:intergenic |
| GTGAGCCATGGTTTGGTCGT+TGG | 0.449098 | 5.2:-30588439 | MS.gene55222:CDS |
| TGGTGAAATGGGAATCAATA+TGG | 0.450711 | 5.2:-30587337 | MS.gene55222:CDS |
| CAGCTATACCATTGGCAGCT+AGG | 0.451926 | 5.2:-30587731 | MS.gene55222:CDS |
| GTCTCCTAAAAGGATTGAAA+TGG | 0.452453 | 5.2:-30588132 | MS.gene55222:CDS |
| GGAATTGTGGAGTGCATTTG+TGG | 0.456578 | 5.2:-30587282 | MS.gene55222:CDS |
| GATGCCGCACGCGCTTATAT+CGG | 0.463998 | 5.2:-30588041 | MS.gene55222:CDS |
| GAGAGTGATCAGAAAGTGTT+TGG | 0.465582 | 5.2:+30588270 | None:intergenic |
| AATGTTTACCCTTGCCATGA+AGG | 0.474845 | 5.2:-30587894 | MS.gene55222:CDS |
| GCATACAGTGAGCCATGGTT+TGG | 0.489223 | 5.2:-30588446 | MS.gene55222:CDS |
| ATACATTCATAAGGTGGCAT+TGG | 0.496564 | 5.2:+30587549 | None:intergenic |
| GGAATTTGATGAATGCAAAA+GGG | 0.503842 | 5.2:-30587422 | MS.gene55222:CDS |
| ATGTGAAAGGGATCCAAAGA+AGG | 0.504134 | 5.2:-30587304 | MS.gene55222:CDS |
| TCACTCGGTAACCACGTTGT+TGG | 0.519277 | 5.2:-30587987 | MS.gene55222:CDS |
| GAATGCAAAAGGGAATGAAA+TGG | 0.526326 | 5.2:-30587412 | MS.gene55222:CDS |
| AGGACAAGTACAAGATTACA+AGG | 0.526429 | 5.2:-30587836 | MS.gene55222:CDS |
| GATCCAAACTCAACTTGCAA+AGG | 0.533426 | 5.2:+30587663 | None:intergenic |
| ATGTTTACCCTTGCCATGAA+GGG | 0.535284 | 5.2:-30587893 | MS.gene55222:CDS |
| GAAAACTTGTACTTGAAGGT+TGG | 0.535716 | 5.2:-30587365 | MS.gene55222:CDS |
| GGTTGAGCAAATATGTGAAA+GGG | 0.538616 | 5.2:-30587316 | MS.gene55222:CDS |
| ATTTCTTTCAGCTATACCAT+TGG | 0.544168 | 5.2:-30587739 | MS.gene55222:CDS |
| GACAAGTACAAGATTACAAG+GGG | 0.544839 | 5.2:-30587834 | MS.gene55222:CDS |
| GAATCCAGTTACAAAAGTGT+TGG | 0.548284 | 5.2:-30587940 | MS.gene55222:CDS |
| CTTCCTCGCGAAACATGCAT+TGG | 0.550897 | 5.2:-30588197 | MS.gene55222:CDS |
| TTTGGGATGATTGAAGTGGG+TGG | 0.553049 | 5.2:-30587387 | MS.gene55222:CDS |
| TGTGGAATTAAAGAAGATGA+TGG | 0.553052 | 5.2:-30587264 | MS.gene55222:CDS |
| AGAAGATGATGGTGAGAGAA+TGG | 0.554875 | 5.2:-30587253 | MS.gene55222:CDS |
| TGGTTGAGCAAATATGTGAA+AGG | 0.555851 | 5.2:-30587317 | MS.gene55222:CDS |
| CATATAGTTATGGCAAAGAA+GGG | 0.561696 | 5.2:+30587115 | None:intergenic |
| AGGTGGCATTGGAATATCCT+TGG | 0.563815 | 5.2:+30587560 | None:intergenic |
| TGGGGATACAAATTTGGTCG+AGG | 0.568057 | 5.2:-30588419 | MS.gene55222:CDS |
| GGTGGAAAACTTGTACTTGA+AGG | 0.570004 | 5.2:-30587369 | MS.gene55222:CDS |
| GGATCCAAAGAAGGGAATTG+TGG | 0.571681 | 5.2:-30587295 | MS.gene55222:CDS |
| ACTTAAAGCTAGAAGTTGAA+AGG | 0.578921 | 5.2:-30587497 | MS.gene55222:CDS |
| TTACCCTTGCCATGAAGGGT+TGG | 0.581244 | 5.2:-30587889 | MS.gene55222:CDS |
| ATAACCAACCCTTCATGGCA+AGG | 0.588536 | 5.2:+30587885 | None:intergenic |
| AATGTGATACATTCATAAGG+TGG | 0.594621 | 5.2:+30587543 | None:intergenic |
| AAGGATTGAAATGGCAACAC+GGG | 0.601348 | 5.2:-30588123 | MS.gene55222:CDS |
| TGTGAAAGGGATCCAAAGAA+GGG | 0.602822 | 5.2:-30587303 | MS.gene55222:CDS |
| TAGTCGAAACAAATTGTCGT+TGG | 0.607261 | 5.2:-30588154 | MS.gene55222:CDS |
| TCACTCTCTTGTCACCCTTG+GGG | 0.608508 | 5.2:-30588255 | MS.gene55222:CDS |
| ATGGAACTAAGACTTGTGAA+TGG | 0.611915 | 5.2:-30588473 | MS.gene55222:CDS |
| GAGCCATGGTTTGGTCGTTG+GGG | 0.614975 | 5.2:-30588437 | MS.gene55222:CDS |
| AGAATTATCCTAGCTGCCAA+TGG | 0.615757 | 5.2:+30587723 | None:intergenic |
| TAACCAACCCTTCATGGCAA+GGG | 0.616092 | 5.2:+30587886 | None:intergenic |
| CTTGTACTTGAAGGTTGGCA+TGG | 0.619314 | 5.2:-30587360 | MS.gene55222:CDS |
| AAATCCCATTAATCTTCCAA+AGG | 0.619758 | 5.2:-30588295 | MS.gene55222:CDS |
| TGGTGTGTGAGTAAGTATAG+TGG | 0.621011 | 5.2:+30588338 | None:intergenic |
| TGTAGTGAAATAAGTCCCCA+AGG | 0.621432 | 5.2:+30588240 | None:intergenic |
| GGCAACACGGGTCATTGTCG+AGG | 0.625213 | 5.2:-30588111 | MS.gene55222:CDS |
| AAAGGATTGAAATGGCAACA+CGG | 0.634016 | 5.2:-30588124 | MS.gene55222:CDS |
| GAATAGCATACAGTGAGCCA+TGG | 0.638270 | 5.2:-30588451 | MS.gene55222:CDS |
| CATGATTGGAATTTGCAATG+TGG | 0.652672 | 5.2:+30588318 | None:intergenic |
| TCATGAGTATTATTTGACCA+AGG | 0.654899 | 5.2:-30587577 | MS.gene55222:CDS |
| GAACCAATGCATGTTTCGCG+AGG | 0.666307 | 5.2:+30588194 | None:intergenic |
| ACATGTTAGAGCTCAAGTCG+CGG | 0.672272 | 5.2:-30588220 | MS.gene55222:CDS |
| GGACAAGTACAAGATTACAA+GGG | 0.673997 | 5.2:-30587835 | MS.gene55222:CDS |
| CCAAATAGTTTCCAACAACG+TGG | 0.675885 | 5.2:+30587976 | None:intergenic |
| TATCCCCAACGACCAAACCA+TGG | 0.677929 | 5.2:+30588434 | None:intergenic |
| ATCTCCGATATAAGCGCGTG+CGG | 0.678353 | 5.2:+30588037 | None:intergenic |
| GTAGTGAAATAAGTCCCCAA+GGG | 0.700987 | 5.2:+30588241 | None:intergenic |
| GTACTTGAAGGTTGGCATGG+TGG | 0.707747 | 5.2:-30587357 | MS.gene55222:CDS |
| ACAAGTACAAGATTACAAGG+GGG | 0.810721 | 5.2:-30587833 | MS.gene55222:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGTACAATTTTGTTA+AGG | - | chr5.2:30587972-30587991 | MS.gene55222:CDS | 15.0% |
| !! | AAATATCTTATCAAAGACTA+TGG | - | chr5.2:30587902-30587921 | MS.gene55222:CDS | 20.0% |
| !! | TAGTAGTAGTAATAAAGTTA+AGG | - | chr5.2:30587739-30587758 | MS.gene55222:CDS | 20.0% |
| !! | TCAAATAATACTCATGATTA+TGG | + | chr5.2:30588015-30588034 | None:intergenic | 20.0% |
| ! | ATTGACACAAAACCAATTAT+AGG | - | chr5.2:30587827-30587846 | MS.gene55222:CDS | 25.0% |
| ! | CTTGTGATATTTGTGAAATT+TGG | - | chr5.2:30588368-30588387 | MS.gene55222:CDS | 25.0% |
| ! | TAAAAAGAACTGAATTCAGA+TGG | - | chr5.2:30587510-30587529 | MS.gene55222:CDS | 25.0% |
| ! | TTAAGGAATGTTAACAATGT+AGG | - | chr5.2:30587989-30588008 | MS.gene55222:CDS | 25.0% |
| ! | TTCAATGTGATACATTCATA+AGG | + | chr5.2:30588058-30588077 | None:intergenic | 25.0% |
| ! | TTGACACAAAACCAATTATA+GGG | - | chr5.2:30587828-30587847 | MS.gene55222:CDS | 25.0% |
| !! | AGAAGTTGAAAGGAATTTTA+GGG | - | chr5.2:30588108-30588127 | MS.gene55222:CDS | 25.0% |
| !! | CTCATATTTTTCTATGCAAA+AGG | - | chr5.2:30588434-30588453 | MS.gene55222:CDS | 25.0% |
| !! | CTTTTGCATAGAAAAATATG+AGG | + | chr5.2:30588436-30588455 | None:intergenic | 25.0% |
| !! | TAGAAGTTGAAAGGAATTTT+AGG | - | chr5.2:30588107-30588126 | MS.gene55222:CDS | 25.0% |
| !! | TCTGAATTCAGTTCTTTTTA+AGG | + | chr5.2:30587510-30587529 | None:intergenic | 25.0% |
| !!! | AATTTTAGGGAAATCTATTG+GGG | - | chr5.2:30588121-30588140 | MS.gene55222:CDS | 25.0% |
| !!! | GAATTTTAGGGAAATCTATT+GGG | - | chr5.2:30588120-30588139 | MS.gene55222:CDS | 25.0% |
| AAATCCCATTAATCTTCCAA+AGG | - | chr5.2:30587300-30587319 | MS.gene55222:CDS | 30.0% | |
| AATGTGATACATTCATAAGG+TGG | + | chr5.2:30588055-30588074 | None:intergenic | 30.0% | |
| ACTTAAAGCTAGAAGTTGAA+AGG | - | chr5.2:30588098-30588117 | MS.gene55222:CDS | 30.0% | |
| AGAAATTCTGACCCTATAAT+TGG | + | chr5.2:30587842-30587861 | None:intergenic | 30.0% | |
| ATTTCTTTCAGCTATACCAT+TGG | - | chr5.2:30587856-30587875 | MS.gene55222:CDS | 30.0% | |
| GATTAATGGGATTTCATGAT+TGG | + | chr5.2:30587294-30587313 | None:intergenic | 30.0% | |
| GGAATTTGATGAATGCAAAA+GGG | - | chr5.2:30588173-30588192 | MS.gene55222:CDS | 30.0% | |
| TCATGAGTATTATTTGACCA+AGG | - | chr5.2:30588018-30588037 | MS.gene55222:CDS | 30.0% | |
| TGTGGAATTAAAGAAGATGA+TGG | - | chr5.2:30588331-30588350 | MS.gene55222:CDS | 30.0% | |
| ! | AAAGGGAATGAAATGGTTTT+TGG | - | chr5.2:30588190-30588209 | MS.gene55222:CDS | 30.0% |
| ! | AAGGGAATGAAATGGTTTTT+GGG | - | chr5.2:30588191-30588210 | MS.gene55222:CDS | 30.0% |
| ! | TTATTGCTTCTATGGCTTTT+TGG | + | chr5.2:30587229-30587248 | None:intergenic | 30.0% |
| !! | GGAATTTTAGGGAAATCTAT+TGG | - | chr5.2:30588119-30588138 | MS.gene55222:CDS | 30.0% |
| !!! | GATTTTGTTTTGAAGTCACT+CGG | - | chr5.2:30587593-30587612 | MS.gene55222:CDS | 30.0% |
| AAAGGATTGAAATGGCAACA+CGG | - | chr5.2:30587471-30587490 | MS.gene55222:CDS | 35.0% | |
| ACAAGTACAAGATTACAAGG+GGG | - | chr5.2:30587762-30587781 | MS.gene55222:CDS | 35.0% | |
| AGGACAAGTACAAGATTACA+AGG | - | chr5.2:30587759-30587778 | MS.gene55222:CDS | 35.0% | |
| ATACATTCATAAGGTGGCAT+TGG | + | chr5.2:30588049-30588068 | None:intergenic | 35.0% | |
| ATGGAACTAAGACTTGTGAA+TGG | - | chr5.2:30587122-30587141 | MS.gene55222:CDS | 35.0% | |
| CATGATTGGAATTTGCAATG+TGG | + | chr5.2:30587280-30587299 | None:intergenic | 35.0% | |
| CATGCTTCTTATTGCTTCTA+TGG | + | chr5.2:30587237-30587256 | None:intergenic | 35.0% | |
| GAAAACTTGTACTTGAAGGT+TGG | - | chr5.2:30588230-30588249 | MS.gene55222:CDS | 35.0% | |
| GAATGCAAAAGGGAATGAAA+TGG | - | chr5.2:30588183-30588202 | MS.gene55222:CDS | 35.0% | |
| GACAAGTACAAGATTACAAG+GGG | - | chr5.2:30587761-30587780 | MS.gene55222:CDS | 35.0% | |
| GCATTCATCAAATTCCCATT+TGG | + | chr5.2:30588169-30588188 | None:intergenic | 35.0% | |
| GGACAAGTACAAGATTACAA+GGG | - | chr5.2:30587760-30587779 | MS.gene55222:CDS | 35.0% | |
| GGGAATTTGATGAATGCAAA+AGG | - | chr5.2:30588172-30588191 | MS.gene55222:CDS | 35.0% | |
| GGTTGAGCAAATATGTGAAA+GGG | - | chr5.2:30588279-30588298 | MS.gene55222:CDS | 35.0% | |
| GTCTCCTAAAAGGATTGAAA+TGG | - | chr5.2:30587463-30587482 | MS.gene55222:CDS | 35.0% | |
| GTGAAATTTGGCAACATACT+AGG | - | chr5.2:30588380-30588399 | MS.gene55222:CDS | 35.0% | |
| TAGTCGAAACAAATTGTCGT+TGG | - | chr5.2:30587441-30587460 | MS.gene55222:CDS | 35.0% | |
| TGAGGAACTTCTTCATCATT+TGG | + | chr5.2:30588418-30588437 | None:intergenic | 35.0% | |
| TGGTGAAATGGGAATCAATA+TGG | - | chr5.2:30588258-30588277 | MS.gene55222:CDS | 35.0% | |
| TGGTTGAGCAAATATGTGAA+AGG | - | chr5.2:30588278-30588297 | MS.gene55222:CDS | 35.0% | |
| ! | AAATTTGGTCGAGGATGTTT+TGG | - | chr5.2:30587185-30587204 | MS.gene55222:CDS | 35.0% |
| ! | ACGACAATTTGTTTCGACTA+AGG | + | chr5.2:30587441-30587460 | None:intergenic | 35.0% |
| ! | GAATCCAGTTACAAAAGTGT+TGG | - | chr5.2:30587655-30587674 | MS.gene55222:CDS | 35.0% |
| ! | GGTACCTTTGGAAGATTAAT+GGG | + | chr5.2:30587307-30587326 | None:intergenic | 35.0% |
| ! | TACTCCAACACTTTTGTAAC+TGG | + | chr5.2:30587662-30587681 | None:intergenic | 35.0% |
| ! | TGGTACCTTTGGAAGATTAA+TGG | + | chr5.2:30587308-30587327 | None:intergenic | 35.0% |
| !! | GTTGCCATTTCAATCCTTTT+AGG | + | chr5.2:30587470-30587489 | None:intergenic | 35.0% |
| !!! | GTTTTTGGGATGATTGAAGT+GGG | - | chr5.2:30588205-30588224 | MS.gene55222:CDS | 35.0% |
| AAGGATTGAAATGGCAACAC+GGG | - | chr5.2:30587472-30587491 | MS.gene55222:CDS | 40.0% | |
| AATGTTTACCCTTGCCATGA+AGG | - | chr5.2:30587701-30587720 | MS.gene55222:CDS | 40.0% | |
| AGAATTATCCTAGCTGCCAA+TGG | + | chr5.2:30587875-30587894 | None:intergenic | 40.0% | |
| ATGTGAAAGGGATCCAAAGA+AGG | - | chr5.2:30588291-30588310 | MS.gene55222:CDS | 40.0% | |
| ATGTTTACCCTTGCCATGAA+GGG | - | chr5.2:30587702-30587721 | MS.gene55222:CDS | 40.0% | |
| CCAAATAGTTTCCAACAACG+TGG | + | chr5.2:30587622-30587641 | None:intergenic | 40.0% | |
| CCACGTTGTTGGAAACTATT+TGG | - | chr5.2:30587619-30587638 | MS.gene55222:CDS | 40.0% | |
| GATCCAAACTCAACTTGCAA+AGG | + | chr5.2:30587935-30587954 | None:intergenic | 40.0% | |
| GGGAAATCTATTGGGGTTTA+AGG | - | chr5.2:30588128-30588147 | MS.gene55222:CDS | 40.0% | |
| GGTGGAAAACTTGTACTTGA+AGG | - | chr5.2:30588226-30588245 | MS.gene55222:CDS | 40.0% | |
| GTAGTGAAATAAGTCCCCAA+GGG | + | chr5.2:30587357-30587376 | None:intergenic | 40.0% | |
| TACTCATAACCAACCCTTCA+TGG | + | chr5.2:30587718-30587737 | None:intergenic | 40.0% | |
| TGGTGTGTGAGTAAGTATAG+TGG | + | chr5.2:30587260-30587279 | None:intergenic | 40.0% | |
| TGTAGTGAAATAAGTCCCCA+AGG | + | chr5.2:30587358-30587377 | None:intergenic | 40.0% | |
| TGTGAAAGGGATCCAAAGAA+GGG | - | chr5.2:30588292-30588311 | MS.gene55222:CDS | 40.0% | |
| ! | AGAAGATGATGGTGAGAGAA+TGG | - | chr5.2:30588342-30588361 | MS.gene55222:CDS | 40.0% |
| ! | ATTGTCGTTGGTCTCCTAAA+AGG | - | chr5.2:30587453-30587472 | MS.gene55222:CDS | 40.0% |
| ! | GTTCCTTTGCAAGTTGAGTT+TGG | - | chr5.2:30587929-30587948 | MS.gene55222:CDS | 40.0% |
| ! | GTTTTGTGGTGCAACCAAAT+GGG | - | chr5.2:30588152-30588171 | MS.gene55222:CDS | 40.0% |
| ! | TTGGGGTTTAAGGAGTTTTG+TGG | - | chr5.2:30588138-30588157 | MS.gene55222:CDS | 40.0% |
| !! | AGTTTTGTGGTGCAACCAAA+TGG | - | chr5.2:30588151-30588170 | MS.gene55222:CDS | 40.0% |
| !! | CAGAAAGTGTTTGGTACCTT+TGG | + | chr5.2:30587319-30587338 | None:intergenic | 40.0% |
| !! | GAGAGTGATCAGAAAGTGTT+TGG | + | chr5.2:30587328-30587347 | None:intergenic | 40.0% |
| !! | TATCGGAGATACTGGTTTGT+TGG | - | chr5.2:30587571-30587590 | MS.gene55222:CDS | 40.0% |
| !!! | GGTTTTTGGGATGATTGAAG+TGG | - | chr5.2:30588204-30588223 | MS.gene55222:CDS | 40.0% |
| ACATGTTAGAGCTCAAGTCG+CGG | - | chr5.2:30587375-30587394 | MS.gene55222:CDS | 45.0% | |
| ATAACCAACCCTTCATGGCA+AGG | + | chr5.2:30587713-30587732 | None:intergenic | 45.0% | |
| ATCACTCTCTTGTCACCCTT+GGG | - | chr5.2:30587339-30587358 | MS.gene55222:CDS | 45.0% | |
| CACTCCACAATTCCCTTCTT+TGG | + | chr5.2:30588307-30588326 | None:intergenic | 45.0% | |
| CTTGTACTTGAAGGTTGGCA+TGG | - | chr5.2:30588235-30588254 | MS.gene55222:CDS | 45.0% | |
| GAATAGCATACAGTGAGCCA+TGG | - | chr5.2:30587144-30587163 | MS.gene55222:CDS | 45.0% | |
| GGAATTGTGGAGTGCATTTG+TGG | - | chr5.2:30588313-30588332 | MS.gene55222:CDS | 45.0% | |
| GGATCCAAAGAAGGGAATTG+TGG | - | chr5.2:30588300-30588319 | MS.gene55222:CDS | 45.0% | |
| GGTCGTTGGGGATACAAATT+TGG | - | chr5.2:30587170-30587189 | MS.gene55222:CDS | 45.0% | |
| TAACCAACCCTTCATGGCAA+GGG | + | chr5.2:30587712-30587731 | None:intergenic | 45.0% | |
| TACAAGGGGGCAACTTATGA+AGG | - | chr5.2:30587775-30587794 | MS.gene55222:CDS | 45.0% | |
| TGGGGATACAAATTTGGTCG+AGG | - | chr5.2:30587176-30587195 | MS.gene55222:CDS | 45.0% | |
| ! | AGGTGGCATTGGAATATCCT+TGG | + | chr5.2:30588038-30588057 | None:intergenic | 45.0% |
| ! | TTTGGGATGATTGAAGTGGG+TGG | - | chr5.2:30588208-30588227 | MS.gene55222:CDS | 45.0% |
| ATCTCCGATATAAGCGCGTG+CGG | + | chr5.2:30587561-30587580 | None:intergenic | 50.0% | |
| CAGCTATACCATTGGCAGCT+AGG | - | chr5.2:30587864-30587883 | MS.gene55222:CDS | 50.0% | |
| CGCGCTTATATCGGAGATAC+TGG | - | chr5.2:30587563-30587582 | MS.gene55222:CDS | 50.0% | |
| CTTCCTCGCGAAACATGCAT+TGG | - | chr5.2:30587398-30587417 | MS.gene55222:CDS | 50.0% | |
| GAACCAATGCATGTTTCGCG+AGG | + | chr5.2:30587404-30587423 | None:intergenic | 50.0% | |
| GATCACTCTCTTGTCACCCT+TGG | - | chr5.2:30587338-30587357 | MS.gene55222:CDS | 50.0% | |
| GCATACAGTGAGCCATGGTT+TGG | - | chr5.2:30587149-30587168 | MS.gene55222:CDS | 50.0% | |
| GTACTTGAAGGTTGGCATGG+TGG | - | chr5.2:30588238-30588257 | MS.gene55222:CDS | 50.0% | |
| TATCCCCAACGACCAAACCA+TGG | + | chr5.2:30587164-30587183 | None:intergenic | 50.0% | |
| TCACTCGGTAACCACGTTGT+TGG | - | chr5.2:30587608-30587627 | MS.gene55222:CDS | 50.0% | |
| TCACTCTCTTGTCACCCTTG+GGG | - | chr5.2:30587340-30587359 | MS.gene55222:CDS | 50.0% | |
| TTACCCTTGCCATGAAGGGT+TGG | - | chr5.2:30587706-30587725 | MS.gene55222:CDS | 50.0% | |
| ! | AGGTTGGCATGGTGGTGAAA+TGG | - | chr5.2:30588246-30588265 | MS.gene55222:CDS | 50.0% |
| ! | GACTAAGGCGCTTGTGTTGA+AGG | + | chr5.2:30587426-30587445 | None:intergenic | 50.0% |
| ! | GGTTGGCATGGTGGTGAAAT+GGG | - | chr5.2:30588247-30588266 | MS.gene55222:CDS | 50.0% |
| !! | TGAGCCATGGTTTGGTCGTT+GGG | - | chr5.2:30587157-30587176 | MS.gene55222:CDS | 50.0% |
| GATGCCGCACGCGCTTATAT+CGG | - | chr5.2:30587554-30587573 | MS.gene55222:CDS | 55.0% | |
| !! | GAGCCATGGTTTGGTCGTTG+GGG | - | chr5.2:30587158-30587177 | MS.gene55222:CDS | 55.0% |
| !! | GTGAGCCATGGTTTGGTCGT+TGG | - | chr5.2:30587156-30587175 | MS.gene55222:CDS | 55.0% |
| GGCAACACGGGTCATTGTCG+AGG | - | chr5.2:30587484-30587503 | MS.gene55222:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 30587122 | 30588495 | 30587122 | ID=MS.gene55222 |
| chr5.2 | mRNA | 30587122 | 30588495 | 30587122 | ID=MS.gene55222.t1;Parent=MS.gene55222 |
| chr5.2 | exon | 30587122 | 30588495 | 30587122 | ID=MS.gene55222.t1.exon1;Parent=MS.gene55222.t1 |
| chr5.2 | CDS | 30587122 | 30588495 | 30587122 | ID=cds.MS.gene55222.t1;Parent=MS.gene55222.t1 |
| Gene Sequence |
| Protein sequence |
