AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55252

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55252.t1 MTR_5g041380 85.640 383 39 2 1 379 1 371 0.0 639
MS.gene55252.t1 MTR_5g041400 84.169 379 44 2 1 379 1 363 0.0 624
MS.gene55252.t1 MTR_5g041530 64.484 397 107 11 1 379 1 381 1.23e-149 428
MS.gene55252.t1 MTR_5g041420 61.440 389 73 9 1 379 1 322 6.24e-129 373
MS.gene55252.t1 MTR_4g082060 38.776 490 154 20 4 378 6 464 2.99e-75 241
MS.gene55252.t1 MTR_7g010950 33.602 497 193 17 2 377 4 484 8.90e-64 211
MS.gene55252.t1 MTR_6g012450 33.002 503 193 18 4 377 6 493 1.01e-52 182
MS.gene55252.t1 MTR_3g435480 36.508 378 128 14 101 377 97 463 4.30e-52 180
MS.gene55252.t1 MTR_8g044220 31.538 390 172 16 77 379 58 439 3.88e-40 147
MS.gene55252.t1 MTR_6g027460 58.586 99 35 2 96 188 51 149 3.16e-32 125
MS.gene55252.t1 MTR_7g086780 31.378 341 133 12 129 379 93 422 6.42e-30 119
MS.gene55252.t1 MTR_2g016030 70.769 65 19 0 124 188 36 100 9.33e-30 112
MS.gene55252.t1 MTR_6g027450 54.167 96 38 2 99 188 47 142 6.43e-28 112
MS.gene55252.t1 MTR_8g079060 63.492 63 23 0 135 197 29 91 5.88e-23 96.3
MS.gene55252.t1 MTR_4g022370 51.429 70 34 0 119 188 66 135 1.33e-21 95.1
MS.gene55252.t1 MTR_8g027295 56.250 64 28 0 125 188 14 77 3.49e-21 92.4
MS.gene55252.t1 MTR_2g093220 57.353 68 29 0 121 188 26 93 5.79e-21 92.4
MS.gene55252.t1 MTR_3g091820 49.398 83 38 1 109 191 21 99 7.25e-21 92.4
MS.gene55252.t1 MTR_8g479350 69.231 52 16 0 137 188 70 121 8.76e-21 92.8
MS.gene55252.t1 MTR_2g096740 67.308 52 17 0 137 188 79 130 9.40e-21 92.0
MS.gene55252.t1 MTR_2g096740 67.308 52 17 0 137 188 64 115 9.84e-21 91.7
MS.gene55252.t1 MTR_4g089095 64.151 53 19 0 137 189 52 104 1.36e-20 91.3
MS.gene55252.t1 MTR_4g089095 64.151 53 19 0 137 189 18 70 1.57e-20 90.5
MS.gene55252.t1 MTR_4g088580 71.154 52 15 0 137 188 57 108 1.59e-20 92.4
MS.gene55252.t1 MTR_7g024670 49.412 85 34 2 103 187 54 129 1.59e-20 92.4
MS.gene55252.t1 MTR_8g015840 67.308 52 17 0 135 186 20 71 2.28e-20 89.0
MS.gene55252.t1 MTR_4g109980 64.151 53 19 0 133 185 38 90 2.34e-20 91.3
MS.gene55252.t1 MTR_1g077600 64.151 53 19 0 135 187 43 95 2.40e-20 90.1
MS.gene55252.t1 MTR_4g461080 61.538 65 21 1 127 187 17 81 2.46e-20 90.1
MS.gene55252.t1 MTR_1g077600 64.151 53 19 0 135 187 43 95 2.72e-20 90.5
MS.gene55252.t1 MTR_1g056810 52.941 85 37 3 125 208 1 83 3.49e-20 90.1
MS.gene55252.t1 MTR_7g059400 51.429 70 34 0 119 188 60 129 4.48e-20 90.9
MS.gene55252.t1 MTR_4g063780 43.269 104 58 1 119 221 59 162 4.76e-20 90.5
MS.gene55252.t1 MTR_2g013370 68.519 54 16 1 135 188 46 98 5.29e-20 89.4
MS.gene55252.t1 MTR_8g068210 51.389 72 27 1 117 188 22 85 8.73e-20 89.7
MS.gene55252.t1 MTR_3g090430 63.158 57 20 1 133 188 48 104 1.34e-19 89.0
MS.gene55252.t1 MTR_2g059540 67.347 49 16 0 135 183 31 79 1.68e-19 86.3
MS.gene55252.t1 MTR_2g014170 67.347 49 16 0 135 183 45 93 1.32e-18 85.9
MS.gene55252.t1 MTR_5g031440 60.000 55 22 0 131 185 39 93 1.36e-18 86.3
MS.gene55252.t1 MTR_2g014060 66.000 50 17 0 137 186 27 76 2.03e-18 85.9
MS.gene55252.t1 MTR_3g077750 64.706 51 18 0 135 185 61 111 5.86e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55252.t1 AT5G62430 44.599 287 133 9 106 379 25 298 5.60e-62 201
MS.gene55252.t1 AT3G47500 33.884 484 174 18 2 379 5 448 2.04e-53 183
MS.gene55252.t1 AT5G39660 33.045 463 211 17 4 377 3 455 2.85e-49 172
MS.gene55252.t1 AT5G39660 33.045 463 211 17 4 377 3 455 2.85e-49 172
MS.gene55252.t1 AT5G39660 33.045 463 211 17 4 377 3 455 2.85e-49 172
MS.gene55252.t1 AT1G69570 35.736 333 157 15 88 379 81 397 3.20e-44 157
MS.gene55252.t1 AT1G26790 33.766 308 165 10 100 379 76 372 1.17e-40 147
MS.gene55252.t1 AT1G29160 71.212 66 19 0 123 188 50 115 6.02e-32 119
MS.gene55252.t1 AT2G34140 58.333 84 32 1 108 188 28 111 2.95e-30 114
MS.gene55252.t1 AT3G55370 35.821 134 75 1 57 190 9 131 1.89e-23 99.8
MS.gene55252.t1 AT3G55370 35.821 134 75 1 57 190 9 131 3.28e-23 99.8
MS.gene55252.t1 AT1G51700 51.190 84 31 1 111 194 19 92 5.34e-22 92.8
MS.gene55252.t1 AT5G60200 57.143 70 30 0 125 194 45 114 7.55e-22 94.0
MS.gene55252.t1 AT3G55370 47.126 87 45 1 105 190 90 176 1.06e-21 95.5
MS.gene55252.t1 AT3G50410 71.154 52 15 0 135 186 30 81 1.30e-21 93.2
MS.gene55252.t1 AT3G21270 72.549 51 14 0 137 187 31 81 3.68e-21 90.9
MS.gene55252.t1 AT3G61850 42.157 102 59 0 90 191 17 118 4.35e-21 92.4
MS.gene55252.t1 AT3G61850 42.157 102 59 0 90 191 17 118 4.35e-21 92.4
MS.gene55252.t1 AT3G61850 42.157 102 59 0 90 191 29 130 4.64e-21 92.8
MS.gene55252.t1 AT3G61850 42.157 102 59 0 90 191 17 118 5.49e-21 92.8
MS.gene55252.t1 AT3G61850 42.157 102 59 0 90 191 29 130 6.29e-21 92.8
MS.gene55252.t1 AT2G28510 67.241 58 19 0 137 194 50 107 8.72e-21 91.7
MS.gene55252.t1 AT5G02460 52.857 70 33 0 119 188 79 148 9.44e-21 93.2
MS.gene55252.t1 AT2G28810 45.679 81 44 0 106 186 48 128 1.39e-20 91.7
MS.gene55252.t1 AT5G60850 66.071 56 19 0 135 190 51 106 1.41e-20 91.7
MS.gene55252.t1 AT2G28810 45.679 81 44 0 106 186 65 145 1.73e-20 91.7
MS.gene55252.t1 AT5G66940 70.588 51 15 0 137 187 34 84 2.26e-20 89.4
MS.gene55252.t1 AT5G65590 49.425 87 41 1 104 190 13 96 2.39e-20 90.9
MS.gene55252.t1 AT1G28310 66.667 54 18 0 135 188 27 80 3.56e-20 90.5
MS.gene55252.t1 AT4G24060 63.158 57 21 0 132 188 50 106 3.94e-20 90.9
MS.gene55252.t1 AT3G45610 59.016 61 25 0 131 191 36 96 4.10e-20 89.0
MS.gene55252.t1 AT1G07640 68.627 51 16 0 137 187 23 73 4.11e-20 89.7
MS.gene55252.t1 AT1G28310 66.667 54 18 0 135 188 51 104 4.76e-20 90.5
MS.gene55252.t1 AT1G07640 68.627 51 16 0 137 187 79 129 4.90e-20 90.5
MS.gene55252.t1 AT2G37590 58.621 58 24 0 131 188 85 142 5.08e-20 90.5
MS.gene55252.t1 AT1G07640 68.627 51 16 0 137 187 87 137 5.94e-20 90.1
MS.gene55252.t1 AT1G47655 69.388 49 15 0 135 183 29 77 1.45e-19 86.7
MS.gene55252.t1 AT4G00940 64.286 56 20 0 137 192 70 125 4.81e-19 87.0
MS.gene55252.t1 AT4G00940 64.286 56 20 0 137 192 70 125 4.81e-19 87.0
MS.gene55252.t1 AT4G00940 64.286 56 20 0 137 192 70 125 4.81e-19 87.0
MS.gene55252.t1 AT1G21340 49.398 83 39 1 118 200 21 100 5.16e-19 86.3
MS.gene55252.t1 AT4G38000 56.250 64 27 1 130 192 36 99 5.60e-19 85.9
MS.gene55252.t1 AT1G64620 51.471 68 29 1 116 183 34 97 5.76e-19 87.4
MS.gene55252.t1 AT3G52440 61.404 57 21 1 133 188 22 78 8.78e-19 85.1
MS.gene55252.t1 AT3G52440 61.404 57 21 1 133 188 41 97 1.19e-18 85.5
MS.gene55252.t1 AT5G62940 67.347 49 16 0 137 185 75 123 6.25e-18 84.7
MS.gene55252.t1 AT2G46590 59.615 52 21 0 131 182 64 115 2.67e-17 82.8
MS.gene55252.t1 AT2G46590 59.615 52 21 0 131 182 76 127 2.70e-17 82.8
MS.gene55252.t1 AT4G21050 50.725 69 32 1 120 188 11 77 3.82e-17 79.7
MS.gene55252.t1 AT4G21040 45.679 81 40 2 137 216 27 104 3.22e-15 74.7
MS.gene55252.t1 AT4G21080 55.769 52 23 0 137 188 27 78 1.47e-14 73.2

Find 71 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAATGGATTTGCATCTA+TGG 0.224783 5.2:+31039569 MS.gene55252:CDS
GTTCCAAGTAAACCTACTTT+AGG 0.234419 5.2:+31039396 MS.gene55252:CDS
AAACCCTTTGCATCTTCATT+AGG 0.263138 5.2:-31039507 None:intergenic
TCTTCAATTCTCAATTTCTT+AGG 0.264262 5.2:-31039483 None:intergenic
GCAAAAGCTGCCAGAGATAT+TGG 0.290195 5.2:+31039034 MS.gene55252:CDS
ACCACCATAGTATGCTATAT+TGG 0.313954 5.2:-31039325 None:intergenic
AACCCTTTGCATCTTCATTA+GGG 0.318049 5.2:-31039506 None:intergenic
CTTGTCAAGAAAATCAATAT+TGG 0.352841 5.2:+31039207 MS.gene55252:CDS
TGCCAGAGATATTGGACTTC+CGG 0.368326 5.2:+31039042 MS.gene55252:CDS
TTCCAAGTAAACCTACTTTA+GGG 0.369270 5.2:+31039397 MS.gene55252:CDS
ATGAGTAGTGTCTTGACCTT+TGG 0.369998 5.2:+31039153 MS.gene55252:CDS
TTCCCTAAAGTAGGTTTACT+TGG 0.378626 5.2:-31039399 None:intergenic
AGTGAAGATGAAGACATAAT+AGG 0.382456 5.2:-31039186 None:intergenic
ACATGATTCAAAGAGATATA+AGG 0.401349 5.2:+31038319 MS.gene55252:CDS
CAACCCAATATAGCATACTA+TGG 0.408858 5.2:+31039321 MS.gene55252:CDS
CCACCATAGTATGCTATATT+GGG 0.415830 5.2:-31039324 None:intergenic
ATCAATTTCAGGAACAATCA+AGG 0.419402 5.2:+31038734 MS.gene55252:intron
CCTTGATAAAGCTGCAGGAT+TGG 0.440224 5.2:-31039640 None:intergenic
TTCAATGGATTTGCATCTAT+GGG 0.443267 5.2:+31039570 MS.gene55252:CDS
TTGCATCTATGGGTGGTGAT+AGG 0.444216 5.2:+31039580 MS.gene55252:CDS
ACACAGGATAACACATTGTT+GGG 0.445576 5.2:-31039293 None:intergenic
TAACACATTGTTGGGTTCCA+TGG 0.452271 5.2:-31039285 None:intergenic
GACACAGGATAACACATTGT+TGG 0.452547 5.2:-31039294 None:intergenic
CTTGAATGTTTCCCTAAAGT+AGG 0.465584 5.2:-31039408 None:intergenic
CTCCGGAAGTCCAATATCTC+TGG 0.468706 5.2:-31039044 None:intergenic
CTCAATAAGGCTTGAAGATG+TGG 0.477034 5.2:-31038827 None:intergenic
CATACTTCTCGTGGTTCCTC+CGG 0.479008 5.2:-31039061 None:intergenic
GCAGAAGTGACGGGGCTGGT+TGG 0.486295 5.2:-31039013 None:intergenic
TTCCCTATCAAATCCTCTCA+TGG 0.498068 5.2:-31039674 None:intergenic
TTTGAAGAATTCACTTCAAG+TGG 0.499476 5.2:-31038293 None:intergenic
GTGGTTGTTTAGTCCCATCA+TGG 0.499829 5.2:+31039343 MS.gene55252:CDS
GAAGTGTCTGTTTCTGATGA+GGG 0.503461 5.2:-31038862 None:intergenic
TATATCTCTTTGAATCATGT+TGG 0.511854 5.2:-31038316 None:intergenic
CCAATCCTGCAGCTTTATCA+AGG 0.521791 5.2:+31039640 MS.gene55252:CDS
AGAAGTATGCTTGTAGGTGC+AGG 0.528984 5.2:+31039075 MS.gene55252:CDS
TTAGGGAAACATTCAAGAGA+TGG 0.534355 5.2:+31039414 MS.gene55252:CDS
AGAAGTGTCTGTTTCTGATG+AGG 0.537046 5.2:-31038863 None:intergenic
TAGGTTGTACGCTCCATGAT+GGG 0.544678 5.2:-31039356 None:intergenic
AGTGTCTGTTTCTGATGAGG+GGG 0.550139 5.2:-31038860 None:intergenic
TGAGACCTTGATAAAGCTGC+AGG 0.554542 5.2:-31039645 None:intergenic
TCATAATCAAGTACTGAGGT+AGG 0.557713 5.2:-31038763 None:intergenic
CATAGTATGCTATATTGGGT+TGG 0.557895 5.2:-31039320 None:intergenic
GAGAAATCTTGATGAGCAAG+AGG 0.571155 5.2:-31038233 None:intergenic
GACCCTAATGAAGATGCAAA+GGG 0.573223 5.2:+31039504 MS.gene55252:CDS
CTAGGAAACAAGAGTGGTGG+AGG 0.573390 5.2:+31039543 MS.gene55252:CDS
ACCACGAGAAGTATGCTTGT+AGG 0.578460 5.2:+31039069 MS.gene55252:CDS
ATAGGTTGTACGCTCCATGA+TGG 0.581466 5.2:-31039357 None:intergenic
AATAAGGCTTGAAGATGTGG+TGG 0.584261 5.2:-31038824 None:intergenic
GGGTTCCATGGAAACTGTTG+TGG 0.587185 5.2:-31039273 None:intergenic
AGACCCTAATGAAGATGCAA+AGG 0.590368 5.2:+31039503 MS.gene55252:CDS
GGTCTCATGTGTTCCATGAG+AGG 0.592053 5.2:+31039661 MS.gene55252:CDS
AAGTGTCTGTTTCTGATGAG+GGG 0.596442 5.2:-31038861 None:intergenic
ACACAAGATTGAGTTGCGAT+AGG 0.596525 5.2:-31039375 None:intergenic
AATAGGAGAATCTGATCCAA+AGG 0.598047 5.2:-31039169 None:intergenic
TTGACGATTATGTGAGACAT+CGG 0.603312 5.2:-31039130 None:intergenic
ATTGGCTTTCAATACTGATG+AGG 0.608635 5.2:-31039622 None:intergenic
ATAAGGCTTGAAGATGTGGT+GGG 0.622284 5.2:-31038823 None:intergenic
TGAACAAAGTGATATGTCAC+AGG 0.628815 5.2:+31038909 MS.gene55252:CDS
AATGGATTTGCATCTATGGG+TGG 0.631829 5.2:+31039573 MS.gene55252:CDS
ACCTACAAGCATACTTCTCG+TGG 0.650658 5.2:-31039070 None:intergenic
GGGAGTGTTTAAATCCTCTG+TGG 0.652740 5.2:-31038803 None:intergenic
CCCAATATAGCATACTATGG+TGG 0.653975 5.2:+31039324 MS.gene55252:CDS
ACACTAGGAAACAAGAGTGG+TGG 0.656394 5.2:+31039540 MS.gene55252:CDS
AAATCTTGATGAGCAAGAGG+AGG 0.659290 5.2:-31038230 None:intergenic
ATATTGGGTTGGAATGACAC+AGG 0.664359 5.2:-31039309 None:intergenic
CAGAGATATTGGACTTCCGG+AGG 0.693631 5.2:+31039045 MS.gene55252:CDS
TTCTTCATAATCAAGTACTG+AGG 0.698198 5.2:-31038767 None:intergenic
GGGTGGTGATAGGAATCATG+TGG 0.704890 5.2:+31039590 MS.gene55252:CDS
AAGAGGAGGAGAAAACTCAG+AGG 0.721417 5.2:-31038216 None:intergenic
TTAACACTAGGAAACAAGAG+TGG 0.767808 5.2:+31039537 MS.gene55252:CDS
AGCCTCAAAACAAACCACAG+AGG 0.778500 5.2:+31038789 MS.gene55252:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATTACTTATAGTT+AGG + chr5.2:31038378-31038397 MS.gene55252:intron 10.0%
!!! TGAAAAATATACAATTTTTT+TGG + chr5.2:31038553-31038572 MS.gene55252:intron 10.0%
!! AATTATTGTTTATCAATTTC+AGG + chr5.2:31038723-31038742 MS.gene55252:intron 15.0%
!! TGATAAACAATAATTAGATT+AGG - chr5.2:31038718-31038737 None:intergenic 15.0%
!! ATAGACTTCAAAATATGAAT+TGG - chr5.2:31038634-31038653 None:intergenic 20.0%
!!! AAGAAGAGATTTTATTCTTA+CGG - chr5.2:31039104-31039123 None:intergenic 20.0%
!!! TTTTGGTGATAAAATTCTTA+TGG + chr5.2:31038507-31038526 MS.gene55252:intron 20.0%
! ACATAATTTCAAGCAAAAAG+TGG - chr5.2:31038459-31038478 None:intergenic 25.0%
! ACATGATTCAAAGAGATATA+AGG + chr5.2:31038319-31038338 MS.gene55252:CDS 25.0%
! CTTGTCAAGAAAATCAATAT+TGG + chr5.2:31039207-31039226 MS.gene55252:CDS 25.0%
! TATATCTCTTTGAATCATGT+TGG - chr5.2:31038319-31038338 None:intergenic 25.0%
! TCTTCAATTCTCAATTTCTT+AGG - chr5.2:31039486-31039505 None:intergenic 25.0%
!! ATTCAACCATTAAGCTTTTT+GGG + chr5.2:31038156-31038175 MS.gene55252:CDS 25.0%
!! TAACTTTGTGGTTCATATTT+TGG + chr5.2:31038687-31038706 MS.gene55252:intron 25.0%
AGTGAAGATGAAGACATAAT+AGG - chr5.2:31039189-31039208 None:intergenic 30.0%
ATCAATTTCAGGAACAATCA+AGG + chr5.2:31038734-31038753 MS.gene55252:intron 30.0%
GTTGCAAATAAAACCAGTTT+AGG - chr5.2:31038660-31038679 None:intergenic 30.0%
TAAGTTTCATTGCAATCTTG+TGG + chr5.2:31038424-31038443 MS.gene55252:intron 30.0%
TGAAGTCTATAATCCTAAAC+TGG + chr5.2:31038644-31038663 MS.gene55252:intron 30.0%
TTCCAAGTAAACCTACTTTA+GGG + chr5.2:31039397-31039416 MS.gene55252:CDS 30.0%
TTTGAAGAATTCACTTCAAG+TGG - chr5.2:31038296-31038315 None:intergenic 30.0%
! GATTCAACCATTAAGCTTTT+TGG + chr5.2:31038155-31038174 MS.gene55252:CDS 30.0%
! TTCAATGGATTTGCATCTAT+GGG + chr5.2:31039570-31039589 MS.gene55252:CDS 30.0%
! TTCTTCATAATCAAGTACTG+AGG - chr5.2:31038770-31038789 None:intergenic 30.0%
! TTTCAATGGATTTGCATCTA+TGG + chr5.2:31039569-31039588 MS.gene55252:CDS 30.0%
!! AAGATGCAAAGGGTTTTAAT+TGG + chr5.2:31039514-31039533 MS.gene55252:CDS 30.0%
!!! GGTTTTAATTGGTTAACACT+AGG + chr5.2:31039525-31039544 MS.gene55252:CDS 30.0%
AAACCCTTTGCATCTTCATT+AGG - chr5.2:31039510-31039529 None:intergenic 35.0%
AACCCTTTGCATCTTCATTA+GGG - chr5.2:31039509-31039528 None:intergenic 35.0%
AATAGGAGAATCTGATCCAA+AGG - chr5.2:31039172-31039191 None:intergenic 35.0%
ACACAGGATAACACATTGTT+GGG - chr5.2:31039296-31039315 None:intergenic 35.0%
ACCACCATAGTATGCTATAT+TGG - chr5.2:31039328-31039347 None:intergenic 35.0%
CAACCCAATATAGCATACTA+TGG + chr5.2:31039321-31039340 MS.gene55252:CDS 35.0%
CATAGTATGCTATATTGGGT+TGG - chr5.2:31039323-31039342 None:intergenic 35.0%
CCACCATAGTATGCTATATT+GGG - chr5.2:31039327-31039346 None:intergenic 35.0%
CTTGAATGTTTCCCTAAAGT+AGG - chr5.2:31039411-31039430 None:intergenic 35.0%
GCAACTTCAACTTAACTTTG+TGG + chr5.2:31038675-31038694 MS.gene55252:intron 35.0%
GTTCCAAGTAAACCTACTTT+AGG + chr5.2:31039396-31039415 MS.gene55252:CDS 35.0%
TGAACAAAGTGATATGTCAC+AGG + chr5.2:31038909-31038928 MS.gene55252:CDS 35.0%
TGTTCTCCCAAAAAGCTTAA+TGG - chr5.2:31038165-31038184 None:intergenic 35.0%
TTAACACTAGGAAACAAGAG+TGG + chr5.2:31039537-31039556 MS.gene55252:CDS 35.0%
TTAGGGAAACATTCAAGAGA+TGG + chr5.2:31039414-31039433 MS.gene55252:CDS 35.0%
TTCCCTAAAGTAGGTTTACT+TGG - chr5.2:31039402-31039421 None:intergenic 35.0%
TTGACGATTATGTGAGACAT+CGG - chr5.2:31039133-31039152 None:intergenic 35.0%
! GGACATGGAACAATTTTGTT+AGG - chr5.2:31038943-31038962 None:intergenic 35.0%
! GTGCACGTTTTTCATCTTTT+TGG + chr5.2:31038490-31038509 MS.gene55252:intron 35.0%
! TTTTTCCACAACAGTTTCCA+TGG + chr5.2:31039268-31039287 MS.gene55252:CDS 35.0%
!! ATTGGCTTTCAATACTGATG+AGG - chr5.2:31039625-31039644 None:intergenic 35.0%
!! TCATAATCAAGTACTGAGGT+AGG - chr5.2:31038766-31038785 None:intergenic 35.0%
AAATCTTGATGAGCAAGAGG+AGG - chr5.2:31038233-31038252 None:intergenic 40.0%
AATAAGGCTTGAAGATGTGG+TGG - chr5.2:31038827-31038846 None:intergenic 40.0%
AGACCCTAATGAAGATGCAA+AGG + chr5.2:31039503-31039522 MS.gene55252:CDS 40.0%
ATAAGGCTTGAAGATGTGGT+GGG - chr5.2:31038826-31038845 None:intergenic 40.0%
ATGAGTAGTGTCTTGACCTT+TGG + chr5.2:31039153-31039172 MS.gene55252:CDS 40.0%
CCCAATATAGCATACTATGG+TGG + chr5.2:31039324-31039343 MS.gene55252:CDS 40.0%
CTCAATAAGGCTTGAAGATG+TGG - chr5.2:31038830-31038849 None:intergenic 40.0%
GACACAGGATAACACATTGT+TGG - chr5.2:31039297-31039316 None:intergenic 40.0%
GACCCTAATGAAGATGCAAA+GGG + chr5.2:31039504-31039523 MS.gene55252:CDS 40.0%
GAGAAATCTTGATGAGCAAG+AGG - chr5.2:31038236-31038255 None:intergenic 40.0%
TAACACATTGTTGGGTTCCA+TGG - chr5.2:31039288-31039307 None:intergenic 40.0%
! AATGGATTTGCATCTATGGG+TGG + chr5.2:31039573-31039592 MS.gene55252:CDS 40.0%
! ACACAAGATTGAGTTGCGAT+AGG - chr5.2:31039378-31039397 None:intergenic 40.0%
! TTTCTGATGAGGGGGTTTTA+GGG - chr5.2:31038855-31038874 None:intergenic 40.0%
!! AAGTGTCTGTTTCTGATGAG+GGG - chr5.2:31038864-31038883 None:intergenic 40.0%
!! AGAAGTGTCTGTTTCTGATG+AGG - chr5.2:31038866-31038885 None:intergenic 40.0%
!! ATATTGGGTTGGAATGACAC+AGG - chr5.2:31039312-31039331 None:intergenic 40.0%
!! GAAGTGTCTGTTTCTGATGA+GGG - chr5.2:31038865-31038884 None:intergenic 40.0%
!!! ATCCTCTGTGGTTTGTTTTG+AGG - chr5.2:31038794-31038813 None:intergenic 40.0%
!!! GGGTTTTAGGGTTCTCAATA+AGG - chr5.2:31038843-31038862 None:intergenic 40.0%
AAGAGGAGGAGAAAACTCAG+AGG - chr5.2:31038219-31038238 None:intergenic 45.0%
ACACTAGGAAACAAGAGTGG+TGG + chr5.2:31039540-31039559 MS.gene55252:CDS 45.0%
ACCTACAAGCATACTTCTCG+TGG - chr5.2:31039073-31039092 None:intergenic 45.0%
AGCCTCAAAACAAACCACAG+AGG + chr5.2:31038789-31038808 MS.gene55252:CDS 45.0%
ATAGGTTGTACGCTCCATGA+TGG - chr5.2:31039360-31039379 None:intergenic 45.0%
CCTTGATAAAGCTGCAGGAT+TGG - chr5.2:31039643-31039662 None:intergenic 45.0%
GCAAAAGCTGCCAGAGATAT+TGG + chr5.2:31039034-31039053 MS.gene55252:CDS 45.0%
GTGGTTGTTTAGTCCCATCA+TGG + chr5.2:31039343-31039362 MS.gene55252:CDS 45.0%
TAGGTTGTACGCTCCATGAT+GGG - chr5.2:31039359-31039378 None:intergenic 45.0%
TGAGACCTTGATAAAGCTGC+AGG - chr5.2:31039648-31039667 None:intergenic 45.0%
TGCCAGAGATATTGGACTTC+CGG + chr5.2:31039042-31039061 MS.gene55252:CDS 45.0%
TTGCATCTATGGGTGGTGAT+AGG + chr5.2:31039580-31039599 MS.gene55252:CDS 45.0%
! ACCACGAGAAGTATGCTTGT+AGG + chr5.2:31039069-31039088 MS.gene55252:CDS 45.0%
! ACGCTTTTGCATCTTGGACA+TGG - chr5.2:31038958-31038977 None:intergenic 45.0%
! AGAAGTATGCTTGTAGGTGC+AGG + chr5.2:31039075-31039094 MS.gene55252:CDS 45.0%
! CCAATCCTGCAGCTTTATCA+AGG + chr5.2:31039640-31039659 MS.gene55252:CDS 45.0%
! GTGTCTACGCTTTTGCATCT+TGG - chr5.2:31038964-31038983 None:intergenic 45.0%
! GTTTCTGATGAGGGGGTTTT+AGG - chr5.2:31038856-31038875 None:intergenic 45.0%
!! AGTGGTGGAGGACTTTTCAA+TGG + chr5.2:31039555-31039574 MS.gene55252:CDS 45.0%
!! AGTGTCTGTTTCTGATGAGG+GGG - chr5.2:31038863-31038882 None:intergenic 45.0%
!! GGGAGTGTTTAAATCCTCTG+TGG - chr5.2:31038806-31038825 None:intergenic 45.0%
CAGAGATATTGGACTTCCGG+AGG + chr5.2:31039045-31039064 MS.gene55252:CDS 50.0%
CATACTTCTCGTGGTTCCTC+CGG - chr5.2:31039064-31039083 None:intergenic 50.0%
CTAGGAAACAAGAGTGGTGG+AGG + chr5.2:31039543-31039562 MS.gene55252:CDS 50.0%
CTCCGGAAGTCCAATATCTC+TGG - chr5.2:31039047-31039066 None:intergenic 50.0%
GGGTGGTGATAGGAATCATG+TGG + chr5.2:31039590-31039609 MS.gene55252:CDS 50.0%
GGGTTCCATGGAAACTGTTG+TGG - chr5.2:31039276-31039295 None:intergenic 50.0%
GGTCTCATGTGTTCCATGAG+AGG + chr5.2:31039661-31039680 MS.gene55252:CDS 50.0%
! CAGCTTTTGCAGAAGTGACG+GGG - chr5.2:31039024-31039043 None:intergenic 50.0%
! GCAGCTTTTGCAGAAGTGAC+GGG - chr5.2:31039025-31039044 None:intergenic 50.0%
! GGCAGCTTTTGCAGAAGTGA+CGG - chr5.2:31039026-31039045 None:intergenic 50.0%
!! TTTTGCAGAAGTGACGGGGC+TGG - chr5.2:31039020-31039039 None:intergenic 55.0%
! GCAGAAGTGACGGGGCTGGT+TGG - chr5.2:31039016-31039035 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 31038146 31039689 31038146 ID=MS.gene55252
chr5.2 mRNA 31038146 31039689 31038146 ID=MS.gene55252.t1;Parent=MS.gene55252
chr5.2 exon 31038146 31038340 31038146 ID=MS.gene55252.t1.exon1;Parent=MS.gene55252.t1
chr5.2 CDS 31038146 31038340 31038146 ID=cds.MS.gene55252.t1;Parent=MS.gene55252.t1
chr5.2 exon 31038745 31039689 31038745 ID=MS.gene55252.t1.exon2;Parent=MS.gene55252.t1
chr5.2 CDS 31038745 31039689 31038745 ID=cds.MS.gene55252.t1;Parent=MS.gene55252.t1
Gene Sequence

>MS.gene55252

ATGACTAATGATTCAACCATTAAGCTTTTTGGGAGAACAATTTTTCAAACACACAACACTGATGATTGTTCCTCTGAGTTTTCTCCTCCTCTTGCTCATCAAGATTTCTCTGATCATAGTCTTCATTCATCTTTATCTTCATCTTCTCCACTTGAAGTGAATTCTTCAAACCAACATGATTCAAAGAGATATAAGGTATGTTTCATGCTAATTTTTCATCTTTTTTTGTTTTAAAATTAATTACTTATAGTTAGGTGTATGCAAATGTGTATTTATACTAAGTTTCATTGCAATCTTGTGGCTATTTTGACCACTTTTTGCTTGAAATTATGTTTCATGAAATTGTGCACGTTTTTCATCTTTTTGGTGATAAAATTCTTATGGCTGTTTTGACAACTTTTTTTGCTTGAAAAATATACAATTTTTTTGGATTTCATGATGACTGATGCTTGATGAAATTGTGCTTTTAAAGTTTTCAAGTTTTTCCAATTCATATTTTGAAGTCTATAATCCTAAACTGGTTTTATTTGCAACTTCAACTTAACTTTGTGGTTCATATTTTGGTCTTACCTAATCTAATTATTGTTTATCAATTTCAGGAACAATCAAGGAAAGAACCTACCTCAGTACTTGATTATGAAGAAGCCTCAAAACAAACCACAGAGGATTTAAACACTCCCACCACATCTTCAAGCCTTATTGAGAACCCTAAAACCCCCTCATCAGAAACAGACACTTCTCAACAGAATTCTACTAAAATTGATGAACAAAGTGATATGTCACAGGACAAAGCTCCTAACAAAATTGTTCCATGTCCAAGATGCAAAAGCGTAGACACAAAATTTTGTTACTACAATAATTACAACGCCAACCAGCCCCGTCACTTCTGCAAAAGCTGCCAGAGATATTGGACTTCCGGAGGAACCACGAGAAGTATGCTTGTAGGTGCAGGTCGCCGTAAGAATAAAATCTCTTCTTTTTCTTCCGATGTCTCACATAATCGTCAAATGAGTAGTGTCTTGACCTTTGGATCAGATTCTCCTATTATGTCTTCATCTTCACTTGTCAAGAAAATCAATATTGGATCAAATGATGAAACATCTGATAAGAGTAATCAGTGTTTTTTTCCACAACAGTTTCCATGGAACCCAACAATGTGTTATCCTGTGTCATTCCAACCCAATATAGCATACTATGGTGGTTGTTTAGTCCCATCATGGAGCGTACAACCTATCGCAACTCAATCTTGTGTTCCAAGTAAACCTACTTTAGGGAAACATTCAAGAGATGGCTTAGAAAATAACAACAAAGAAAGTGATAATAATAGTGTGTTGATTCCTAAGAAATTGAGAATTGAAGACCCTAATGAAGATGCAAAGGGTTTTAATTGGTTAACACTAGGAAACAAGAGTGGTGGAGGACTTTTCAATGGATTTGCATCTATGGGTGGTGATAGGAATCATGTGGTTGAAGCAGCCTCATCAGTATTGAAAGCCAATCCTGCAGCTTTATCAAGGTCTCATGTGTTCCATGAGAGGATTTGA
Protein sequence

>MS.gene55252.t1

MTNDSTIKLFGRTIFQTHNTDDCSSEFSPPLAHQDFSDHSLHSSLSSSSPLEVNSSNQHDSKRYKEQSRKEPTSVLDYEEASKQTTEDLNTPTTSSSLIENPKTPSSETDTSQQNSTKIDEQSDMSQDKAPNKIVPCPRCKSVDTKFCYYNNYNANQPRHFCKSCQRYWTSGGTTRSMLVGAGRRKNKISSFSSDVSHNRQMSSVLTFGSDSPIMSSSSLVKKINIGSNDETSDKSNQCFFPQQFPWNPTMCYPVSFQPNIAYYGGCLVPSWSVQPIATQSCVPSKPTLGKHSRDGLENNNKESDNNSVLIPKKLRIEDPNEDAKGFNWLTLGNKSGGGLFNGFASMGGDRNHVVEAASSVLKANPAALSRSHVFHERI