Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55262.t1 | AES96803.2 | 98.8 | 337 | 4 | 0 | 1 | 337 | 66 | 402 | 1.10E-185 | 659.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55262.t1 | Q1PFA4 | 44.9 | 350 | 167 | 8 | 1 | 326 | 29 | 376 | 6.5e-65 | 249.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55262.t1 | G7KGN7 | 98.8 | 337 | 4 | 0 | 1 | 337 | 66 | 402 | 8.1e-186 | 659.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene55262.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55262.t1 | MTR_5g041650 | 98.813 | 337 | 4 | 0 | 1 | 337 | 66 | 402 | 0.0 | 694 |
MS.gene55262.t1 | MTR_4g108720 | 47.164 | 335 | 157 | 7 | 1 | 324 | 29 | 354 | 5.63e-93 | 281 |
MS.gene55262.t1 | MTR_3g102570 | 29.032 | 155 | 91 | 5 | 1 | 145 | 29 | 174 | 5.66e-13 | 68.9 |
MS.gene55262.t1 | MTR_4g084740 | 29.878 | 164 | 100 | 5 | 1 | 150 | 29 | 191 | 4.74e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55262.t1 | AT2G03060 | 43.662 | 355 | 164 | 7 | 1 | 326 | 29 | 376 | 1.19e-80 | 251 |
MS.gene55262.t1 | AT2G03060 | 43.454 | 359 | 167 | 7 | 1 | 330 | 29 | 380 | 1.28e-80 | 250 |
MS.gene55262.t1 | AT2G03060 | 43.454 | 359 | 167 | 7 | 1 | 330 | 29 | 380 | 1.28e-80 | 250 |
MS.gene55262.t1 | AT2G03060 | 43.454 | 359 | 167 | 7 | 1 | 330 | 29 | 380 | 1.28e-80 | 250 |
MS.gene55262.t1 | AT1G18750 | 51.055 | 237 | 104 | 5 | 1 | 229 | 29 | 261 | 9.71e-69 | 220 |
MS.gene55262.t1 | AT1G18750 | 51.055 | 237 | 104 | 5 | 1 | 229 | 29 | 261 | 1.20e-68 | 220 |
MS.gene55262.t1 | AT1G69540 | 41.298 | 339 | 157 | 14 | 1 | 324 | 29 | 340 | 1.05e-64 | 208 |
MS.gene55262.t1 | AT1G69540 | 41.298 | 339 | 157 | 14 | 1 | 324 | 29 | 340 | 4.60e-64 | 207 |
MS.gene55262.t1 | AT1G18750 | 44.815 | 270 | 104 | 6 | 1 | 229 | 29 | 294 | 8.22e-62 | 203 |
MS.gene55262.t1 | AT1G18750 | 48.402 | 219 | 101 | 5 | 19 | 229 | 1 | 215 | 3.61e-57 | 188 |
MS.gene55262.t1 | AT2G03060 | 38.562 | 306 | 152 | 7 | 54 | 330 | 24 | 322 | 2.00e-49 | 168 |
MS.gene55262.t1 | AT2G03060 | 38.562 | 306 | 152 | 7 | 54 | 330 | 24 | 322 | 2.00e-49 | 168 |
MS.gene55262.t1 | AT2G03060 | 38.562 | 306 | 152 | 7 | 54 | 330 | 24 | 322 | 2.00e-49 | 168 |
MS.gene55262.t1 | AT1G69540 | 33.088 | 272 | 141 | 13 | 68 | 324 | 2 | 247 | 8.97e-28 | 109 |
MS.gene55262.t1 | AT1G18750 | 38.961 | 154 | 82 | 5 | 84 | 229 | 10 | 159 | 8.43e-24 | 99.4 |
MS.gene55262.t1 | AT1G18750 | 37.908 | 153 | 83 | 5 | 85 | 229 | 23 | 171 | 6.11e-22 | 94.4 |
MS.gene55262.t1 | AT1G77980 | 30.357 | 168 | 101 | 6 | 1 | 153 | 29 | 195 | 7.95e-13 | 68.9 |
Find 53 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGAAATTCATGAGAGATTA+AGG | 0.265694 | 5.2:+31237529 | MS.gene55262:CDS |
AATTAGTAGTGTGGATAAAC+TGG | 0.285333 | 5.2:+31237702 | MS.gene55262:CDS |
GTGAGACTACAACAATTTAA+TGG | 0.289219 | 5.2:+31239390 | MS.gene55262:CDS |
GCAGCTTTCTTGACCAGAAT+TGG | 0.312176 | 5.2:-31239331 | None:intergenic |
CCTTAATCTCTCATGAATTT+CGG | 0.312515 | 5.2:-31237529 | None:intergenic |
TTGAAATTGTTTGGTATGTA+TGG | 0.317670 | 5.2:-31239420 | None:intergenic |
TTCATAATGTTGAAATTGTT+TGG | 0.322241 | 5.2:-31239429 | None:intergenic |
GGAAGCTATGCTAGTTATCT+TGG | 0.323605 | 5.2:+31239285 | MS.gene55262:CDS |
AGAATTGGACATGTTTGTTT+TGG | 0.326734 | 5.2:-31239316 | None:intergenic |
TCTCTGTCTTGGATGGTTAA+TGG | 0.333794 | 5.2:+31238276 | MS.gene55262:CDS |
CATGGTTGGACTTCTAATTC+AGG | 0.334226 | 5.2:+31239573 | MS.gene55262:CDS |
ATGAAGCTCCAACCAGTTAC+AGG | 0.341157 | 5.2:+31239456 | MS.gene55262:CDS |
GACTGATCAAACCCTTGTTT+AGG | 0.371489 | 5.2:-31239540 | None:intergenic |
TGATGAACATTTGTATCCTC+AGG | 0.394325 | 5.2:+31239617 | MS.gene55262:CDS |
GGATTATTCATCCCTGTAAC+TGG | 0.398800 | 5.2:-31239468 | None:intergenic |
ATCTTTGCAATGCAATAATC+AGG | 0.399501 | 5.2:+31238104 | MS.gene55262:CDS |
AAAACAAACATGTCCAATTC+TGG | 0.404031 | 5.2:+31239318 | MS.gene55262:CDS |
GGTTCAACAAGCTCATCATT+TGG | 0.415104 | 5.2:+31239264 | MS.gene55262:CDS |
AGAAGCAAACTTGAGTCTTC+AGG | 0.422149 | 5.2:-31238321 | None:intergenic |
TGGTGAATGTAGCAACTTTG+AGG | 0.431835 | 5.2:+31236611 | MS.gene55262:intron |
AGCATCTTCAATCTCTGTCT+TGG | 0.441721 | 5.2:+31238265 | MS.gene55262:CDS |
TAATCAAATTCAAACTCATA+AGG | 0.457761 | 5.2:+31237756 | MS.gene55262:CDS |
CTCAACTAACCTCACAAGAA+AGG | 0.460292 | 5.2:+31236652 | MS.gene55262:CDS |
TTAAATTGTTGTAGTCTCAC+TGG | 0.465422 | 5.2:-31239387 | None:intergenic |
AAATGTACAAAAGCAACAAC+TGG | 0.484094 | 5.2:+31238080 | MS.gene55262:CDS |
CTTCAGGTAACACTAAATTC+TGG | 0.489233 | 5.2:-31238305 | None:intergenic |
CCTCTTTGCCCTTTCTTGTG+AGG | 0.498715 | 5.2:-31236661 | None:intergenic |
GATCAGTCTAATAATCATCA+TGG | 0.500916 | 5.2:+31239555 | MS.gene55262:CDS |
AGTCTAATAATCATCATGGT+TGG | 0.502518 | 5.2:+31239559 | MS.gene55262:CDS |
CGCCTCCCTGTGCATAATGA+AGG | 0.509179 | 5.2:-31235370 | None:intergenic |
CATTATGCACAGGGAGGCGC+AGG | 0.512848 | 5.2:+31235374 | MS.gene55262:CDS |
TCAACTAACCTCACAAGAAA+GGG | 0.524960 | 5.2:+31236653 | MS.gene55262:CDS |
TCTTCAATCTCTGTCTTGGA+TGG | 0.532373 | 5.2:+31238269 | MS.gene55262:CDS |
TGTGGATAAACTGGGACAGT+TGG | 0.534294 | 5.2:+31237711 | MS.gene55262:CDS |
GATACGCTTATGTAAAAGCT+TGG | 0.535960 | 5.2:-31237505 | None:intergenic |
GTTCTATCATAGAGATGTAG+AGG | 0.541852 | 5.2:+31239242 | MS.gene55262:intron |
GGAAAACCTTCATTATGCAC+AGG | 0.541969 | 5.2:+31235364 | MS.gene55262:CDS |
TATTCATCCCTGTAACTGGT+TGG | 0.552728 | 5.2:-31239464 | None:intergenic |
TTGCAGTAGTCAAACTGTTG+AGG | 0.555876 | 5.2:+31237386 | MS.gene55262:intron |
AACTTTGAAGCACCTAAACA+AGG | 0.556172 | 5.2:+31239528 | MS.gene55262:CDS |
GATGAACATTTGTATCCTCA+GGG | 0.556930 | 5.2:+31239618 | MS.gene55262:CDS |
GTGAATCCAAAATGCACTTG+TGG | 0.579613 | 5.2:-31239648 | None:intergenic |
TTCTATCATAGAGATGTAGA+GGG | 0.607135 | 5.2:+31239243 | MS.gene55262:intron |
CCTCACAAGAAAGGGCAAAG+AGG | 0.614419 | 5.2:+31236661 | MS.gene55262:CDS |
ACTTTGAAGCACCTAAACAA+GGG | 0.617044 | 5.2:+31239529 | MS.gene55262:CDS |
TGAAGCTCCAACCAGTTACA+GGG | 0.625859 | 5.2:+31239457 | MS.gene55262:CDS |
ACAGTTGGAAAATTCACTCA+AGG | 0.626422 | 5.2:+31237726 | MS.gene55262:CDS |
ATTAGTAGTGTGGATAAACT+GGG | 0.628981 | 5.2:+31237703 | MS.gene55262:CDS |
GAAAACCTTCATTATGCACA+GGG | 0.671432 | 5.2:+31235365 | MS.gene55262:CDS |
TCAAAGATATTAGCAGCACA+AGG | 0.680727 | 5.2:-31239597 | None:intergenic |
AACCTTCATTATGCACAGGG+AGG | 0.717217 | 5.2:+31235368 | MS.gene55262:CDS |
TGAATGTAGCAACTTTGAGG+AGG | 0.731003 | 5.2:+31236614 | MS.gene55262:intron |
ACTTGTGGAAAATTTCCCTG+AGG | 0.756884 | 5.2:-31239633 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTAAAAAGTAAATAAAAAA+TGG | - | chr5.2:31237193-31237212 | None:intergenic | 10.0% |
!!! | GAAAATTTATATATTTTCAT+TGG | - | chr5.2:31238717-31238736 | None:intergenic | 10.0% |
!! | AAAAGTAAATAAAAAATGGT+TGG | - | chr5.2:31237189-31237208 | None:intergenic | 15.0% |
!! | ATCGTATAATAAACATTATT+CGG | + | chr5.2:31238506-31238525 | MS.gene55262:intron | 15.0% |
!! | ATGATATGAATATTAAAACA+TGG | + | chr5.2:31238180-31238199 | MS.gene55262:intron | 15.0% |
!! | ATGTAACAAATAATGTAAAT+GGG | + | chr5.2:31235423-31235442 | MS.gene55262:intron | 15.0% |
!! | TATCAAATTCTAATGTATTT+AGG | - | chr5.2:31236735-31236754 | None:intergenic | 15.0% |
!! | TATGTAACAAATAATGTAAA+TGG | + | chr5.2:31235422-31235441 | MS.gene55262:intron | 15.0% |
!! | TTAATCAATAAAATTGATCA+TGG | + | chr5.2:31239146-31239165 | MS.gene55262:intron | 15.0% |
!! | TTGAAACAAAATTCTAATAT+TGG | + | chr5.2:31236060-31236079 | MS.gene55262:intron | 15.0% |
!! | TTTCAAATAGTAATAATTCA+TGG | - | chr5.2:31236046-31236065 | None:intergenic | 15.0% |
!!! | AATGTTTTTAATTGATTAAG+TGG | + | chr5.2:31237818-31237837 | MS.gene55262:intron | 15.0% |
!!! | ATATATCTATAAACTGTTTT+AGG | - | chr5.2:31237933-31237952 | None:intergenic | 15.0% |
!! | AAATTGATCACAATGATATA+GGG | + | chr5.2:31235939-31235958 | MS.gene55262:intron | 20.0% |
!! | ATCATTACTAAAAATGAATG+AGG | - | chr5.2:31236883-31236902 | None:intergenic | 20.0% |
!! | ATTTCCTGTTAAAATTCAAT+TGG | - | chr5.2:31236768-31236787 | None:intergenic | 20.0% |
!! | TAATCAAATTCAAACTCATA+AGG | + | chr5.2:31237756-31237775 | MS.gene55262:CDS | 20.0% |
!! | TAATGCAGCATTTAAATTAT+AGG | + | chr5.2:31238033-31238052 | MS.gene55262:intron | 20.0% |
!! | TATCATTACTTATGTATGTT+TGG | - | chr5.2:31236448-31236467 | None:intergenic | 20.0% |
!! | TCAAAATAATCAAAGCAATT+AGG | - | chr5.2:31236474-31236493 | None:intergenic | 20.0% |
!! | TCAATAGTAAAACTAACATT+AGG | - | chr5.2:31236527-31236546 | None:intergenic | 20.0% |
!! | TCTCAAATTATTATCTATGT+CGG | + | chr5.2:31239073-31239092 | MS.gene55262:intron | 20.0% |
!! | TTAATACAAATGATCTGTAA+AGG | - | chr5.2:31238941-31238960 | None:intergenic | 20.0% |
!! | TTCATAATGTTGAAATTGTT+TGG | - | chr5.2:31239432-31239451 | None:intergenic | 20.0% |
!!! | AAACATTTTTCATAATGTCT+AGG | - | chr5.2:31237805-31237824 | None:intergenic | 20.0% |
!!! | AAATAATGTAAATGGGTTTA+AGG | + | chr5.2:31235430-31235449 | MS.gene55262:intron | 20.0% |
!!! | AAATATACATCTCTCTTTTT+TGG | + | chr5.2:31236837-31236856 | MS.gene55262:intron | 20.0% |
!!! | AACATTTTTCATAATGTCTA+GGG | - | chr5.2:31237804-31237823 | None:intergenic | 20.0% |
!!! | AATATCAATGTTTTGAAAAC+CGG | + | chr5.2:31237022-31237041 | MS.gene55262:intron | 20.0% |
!!! | ATATGGATTGACAAATTTAA+AGG | + | chr5.2:31235858-31235877 | MS.gene55262:intron | 20.0% |
!!! | ATTGAATTTTAACAGGAAAT+TGG | + | chr5.2:31236768-31236787 | MS.gene55262:intron | 20.0% |
!!! | TAATTTAGTCCACATTTTTA+GGG | + | chr5.2:31238837-31238856 | MS.gene55262:intron | 20.0% |
!!! | TAGTAATGATTTTTTGTTTG+AGG | + | chr5.2:31236893-31236912 | MS.gene55262:intron | 20.0% |
!!! | TGATATATGTTTGTTTTACA+AGG | + | chr5.2:31236544-31236563 | MS.gene55262:intron | 20.0% |
!!! | TTAATTTAGTCCACATTTTT+AGG | + | chr5.2:31238836-31238855 | MS.gene55262:intron | 20.0% |
!!! | TTGTAACTTCTAAAATTTCA+CGG | - | chr5.2:31236400-31236419 | None:intergenic | 20.0% |
!!! | TTTATTGATTAATACCTATG+AGG | - | chr5.2:31239138-31239157 | None:intergenic | 20.0% |
! | AACAAAAACTTGTGTTTACA+AGG | - | chr5.2:31238749-31238768 | None:intergenic | 25.0% |
! | AATCTAACTGCTAAAAATCA+CGG | - | chr5.2:31236108-31236127 | None:intergenic | 25.0% |
! | ACATAACTCAGTGTAATTAT+AGG | - | chr5.2:31239048-31239067 | None:intergenic | 25.0% |
! | ACTCAAAAATCAGAATAACA+AGG | - | chr5.2:31238402-31238421 | None:intergenic | 25.0% |
! | ATACTACAATCTAGTTGAAT+CGG | + | chr5.2:31237113-31237132 | MS.gene55262:intron | 25.0% |
! | ATCAATAAAATTGATCATGG+TGG | + | chr5.2:31239149-31239168 | MS.gene55262:intron | 25.0% |
! | ATTTAAATGCTGCATTATTG+AGG | - | chr5.2:31238030-31238049 | None:intergenic | 25.0% |
! | CAAACAAATAAATGCCTTAT+TGG | - | chr5.2:31235487-31235506 | None:intergenic | 25.0% |
! | CAAATTGATCACAATGATAT+AGG | + | chr5.2:31235938-31235957 | MS.gene55262:intron | 25.0% |
! | CATTGAAAAAATTAGTAGTG+TGG | + | chr5.2:31237693-31237712 | MS.gene55262:CDS | 25.0% |
! | GTGTAAATTCAAAAAGAAGA+TGG | + | chr5.2:31235824-31235843 | MS.gene55262:intron | 25.0% |
! | TCATTGTGATCAATTTGTAA+TGG | - | chr5.2:31235935-31235954 | None:intergenic | 25.0% |
! | TTGAAATTGTTTGGTATGTA+TGG | - | chr5.2:31239423-31239442 | None:intergenic | 25.0% |
!! | AATTATTCTAGTTACAACAG+AGG | + | chr5.2:31238456-31238475 | MS.gene55262:intron | 25.0% |
!! | ATTTTTACATAGTAGAAGGA+TGG | + | chr5.2:31235887-31235906 | MS.gene55262:intron | 25.0% |
!! | GTGAATATACAAGACTTTTA+TGG | + | chr5.2:31236956-31236975 | MS.gene55262:CDS | 25.0% |
!! | TAAGGCATTTATTTGTTTGT+TGG | + | chr5.2:31235488-31235507 | MS.gene55262:intron | 25.0% |
!! | TTATCTACTTGATTTTCATG+TGG | - | chr5.2:31239492-31239511 | None:intergenic | 25.0% |
!! | TTTTTACATAGTAGAAGGAT+GGG | + | chr5.2:31235888-31235907 | MS.gene55262:intron | 25.0% |
!!! | AAACTGTTTTAGGCTTAATT+TGG | - | chr5.2:31237923-31237942 | None:intergenic | 25.0% |
!!! | AATATTTTAGTGTCTCAACT+TGG | - | chr5.2:31237353-31237372 | None:intergenic | 25.0% |
!!! | AGATGGTGTTTTTTCTTATA+TGG | + | chr5.2:31235841-31235860 | MS.gene55262:intron | 25.0% |
!!! | ATTAGCATAGCTTTAGAAAA+AGG | + | chr5.2:31235997-31236016 | MS.gene55262:intron | 25.0% |
!!! | TTCTCCAATTGAATTTTAAC+AGG | + | chr5.2:31236761-31236780 | MS.gene55262:intron | 25.0% |
!!! | TTGAGTTTGCTTAATCATTT+TGG | + | chr5.2:31238416-31238435 | MS.gene55262:intron | 25.0% |
!!! | TTTCAATTCCAAGTTTTGAT+GGG | + | chr5.2:31235581-31235600 | MS.gene55262:intron | 25.0% |
!!! | TTTTTTGAAAACTCAGTAAC+CGG | - | chr5.2:31238635-31238654 | None:intergenic | 25.0% |
AAAACAAACATGTCCAATTC+TGG | + | chr5.2:31239318-31239337 | MS.gene55262:CDS | 30.0% | |
AAACACACTTATAGCATGTT+TGG | - | chr5.2:31236331-31236350 | None:intergenic | 30.0% | |
AAACATGCTATAAGTGTGTT+TGG | + | chr5.2:31236330-31236349 | MS.gene55262:intron | 30.0% | |
AAATGTACAAAAGCAACAAC+TGG | + | chr5.2:31238080-31238099 | MS.gene55262:CDS | 30.0% | |
AAGAAAAAACAACTCACTTG+TGG | - | chr5.2:31238347-31238366 | None:intergenic | 30.0% | |
AATTAGTAGTGTGGATAAAC+TGG | + | chr5.2:31237702-31237721 | MS.gene55262:CDS | 30.0% | |
AATTATTGTCTCCTCTACTT+TGG | + | chr5.2:31236591-31236610 | MS.gene55262:intron | 30.0% | |
ACAAAGACACTCCTAATATT+AGG | + | chr5.2:31238969-31238988 | MS.gene55262:intron | 30.0% | |
ACGGTCATATTATGAAGATT+TGG | - | chr5.2:31236089-31236108 | None:intergenic | 30.0% | |
AGAGGCAAATAAAATCATAG+TGG | + | chr5.2:31238474-31238493 | MS.gene55262:intron | 30.0% | |
AGTCTAATAATCATCATGGT+TGG | + | chr5.2:31239559-31239578 | MS.gene55262:CDS | 30.0% | |
ATAACACGTGACTATAAGTA+AGG | - | chr5.2:31238807-31238826 | None:intergenic | 30.0% | |
ATCTTTGCAATGCAATAATC+AGG | + | chr5.2:31238104-31238123 | MS.gene55262:CDS | 30.0% | |
ATTAGTAGTGTGGATAAACT+GGG | + | chr5.2:31237703-31237722 | MS.gene55262:CDS | 30.0% | |
ATTGATTAAGTGGAGAATCA+AGG | + | chr5.2:31237828-31237847 | MS.gene55262:intron | 30.0% | |
CAACTAGATTGTAGTATAAC+TGG | - | chr5.2:31237110-31237129 | None:intergenic | 30.0% | |
CATTGAATGAGAAAATGTGA+AGG | - | chr5.2:31237436-31237455 | None:intergenic | 30.0% | |
CCTTAATCTCTCATGAATTT+CGG | - | chr5.2:31237532-31237551 | None:intergenic | 30.0% | |
CTAATTCTTCCTACTTTGAT+AGG | + | chr5.2:31238056-31238075 | MS.gene55262:intron | 30.0% | |
GATCAGTCTAATAATCATCA+TGG | + | chr5.2:31239555-31239574 | MS.gene55262:CDS | 30.0% | |
GTGAGACTACAACAATTTAA+TGG | + | chr5.2:31239390-31239409 | MS.gene55262:CDS | 30.0% | |
TATACACTTTCCATCATCAT+GGG | + | chr5.2:31235656-31235675 | MS.gene55262:intron | 30.0% | |
TCCTAATATTAGGTGTGTTT+CGG | + | chr5.2:31238979-31238998 | MS.gene55262:intron | 30.0% | |
TGGATTGACAAATTTAAAGG+TGG | + | chr5.2:31235861-31235880 | MS.gene55262:intron | 30.0% | |
TTAAATTGTTGTAGTCTCAC+TGG | - | chr5.2:31239390-31239409 | None:intergenic | 30.0% | |
TTATACACTTTCCATCATCA+TGG | + | chr5.2:31235655-31235674 | MS.gene55262:intron | 30.0% | |
TTCTATCATAGAGATGTAGA+GGG | + | chr5.2:31239243-31239262 | MS.gene55262:intron | 30.0% | |
TTTGTTGGAGACATAATTGA+TGG | + | chr5.2:31235503-31235522 | MS.gene55262:intron | 30.0% | |
! | AATTTTCCACAAGTGCATTT+TGG | + | chr5.2:31239642-31239661 | MS.gene55262:CDS | 30.0% |
! | AGAATTGGACATGTTTGTTT+TGG | - | chr5.2:31239319-31239338 | None:intergenic | 30.0% |
! | AGCATATGTTTGGATTTTCT+TGG | - | chr5.2:31236169-31236188 | None:intergenic | 30.0% |
! | ATACTTCTTATGTTTTCTCC+AGG | + | chr5.2:31235340-31235359 | MS.gene55262:CDS | 30.0% |
! | ATCAGGTAAAGAACTGTTTT+AGG | + | chr5.2:31238121-31238140 | MS.gene55262:intron | 30.0% |
! | CTTAATTTGGTAAACTGTTC+AGG | - | chr5.2:31237910-31237929 | None:intergenic | 30.0% |
! | GCATATGTTTGGATTTTCTT+GGG | - | chr5.2:31236168-31236187 | None:intergenic | 30.0% |
! | GTACATTTTCCTATCAAAGT+AGG | - | chr5.2:31238068-31238087 | None:intergenic | 30.0% |
! | TACAAGACTTTTATGGTACA+AGG | + | chr5.2:31236963-31236982 | MS.gene55262:CDS | 30.0% |
! | TCAGGTAAAGAACTGTTTTA+GGG | + | chr5.2:31238122-31238141 | MS.gene55262:intron | 30.0% |
! | TCTCAACTTGGTGAAATAAA+TGG | - | chr5.2:31237341-31237360 | None:intergenic | 30.0% |
! | TCTGTCATATTTGTTGATGT+TGG | - | chr5.2:31238870-31238889 | None:intergenic | 30.0% |
! | TGTCTCTGTCTAAAACTTAT+AGG | + | chr5.2:31238675-31238694 | MS.gene55262:intron | 30.0% |
! | TGTTTGTTAGAACACCAATA+AGG | + | chr5.2:31235470-31235489 | MS.gene55262:intron | 30.0% |
! | TTGTTGTATTTTGCAGCAAT+TGG | + | chr5.2:31237665-31237684 | MS.gene55262:intron | 30.0% |
!! | CTTTCAATTCCAAGTTTTGA+TGG | + | chr5.2:31235580-31235599 | MS.gene55262:intron | 30.0% |
!! | GGTTTTAATCCCTAAAAATG+TGG | - | chr5.2:31238849-31238868 | None:intergenic | 30.0% |
!! | GTCGATTTTTACATAGTAGA+AGG | + | chr5.2:31235883-31235902 | MS.gene55262:intron | 30.0% |
!! | TTCAATTCCAAGTTTTGATG+GGG | + | chr5.2:31235582-31235601 | MS.gene55262:intron | 30.0% |
!!! | ATGATTTTTTGTTTGAGGTC+AGG | + | chr5.2:31236898-31236917 | MS.gene55262:intron | 30.0% |
!!! | TGTTGATGACTCATTTTGTA+GGG | - | chr5.2:31238246-31238265 | None:intergenic | 30.0% |
ACAGTTGGAAAATTCACTCA+AGG | + | chr5.2:31237726-31237745 | MS.gene55262:CDS | 35.0% | |
ACATATGCTAAGTGTTCGTT+TGG | + | chr5.2:31236180-31236199 | MS.gene55262:intron | 35.0% | |
ACCGAAACACACCTAATATT+AGG | - | chr5.2:31238983-31239002 | None:intergenic | 35.0% | |
ACGAACACTTAGCATATGTT+TGG | - | chr5.2:31236179-31236198 | None:intergenic | 35.0% | |
AGCTTGCAAGATGTAACTAA+AGG | - | chr5.2:31237626-31237645 | None:intergenic | 35.0% | |
ATAACGATCGACTAATCTGA+AGG | - | chr5.2:31238611-31238630 | None:intergenic | 35.0% | |
ATCTGGATTGACAAATCCAA+AGG | - | chr5.2:31235772-31235791 | None:intergenic | 35.0% | |
ATTGCTAAATTAGTTGGAGC+AGG | - | chr5.2:31236994-31237013 | None:intergenic | 35.0% | |
CAAATTTCACCATCCATTTG+TGG | - | chr5.2:31238587-31238606 | None:intergenic | 35.0% | |
CAGACAAACGTGAAAAAAGA+CGG | - | chr5.2:31235805-31235824 | None:intergenic | 35.0% | |
CCGAAATTCATGAGAGATTA+AGG | + | chr5.2:31237529-31237548 | MS.gene55262:CDS | 35.0% | |
CGACACATTGCTAAATTAGT+TGG | - | chr5.2:31237000-31237019 | None:intergenic | 35.0% | |
CTTCAGGTAACACTAAATTC+TGG | - | chr5.2:31238308-31238327 | None:intergenic | 35.0% | |
GAAAACCTTCATTATGCACA+GGG | + | chr5.2:31235365-31235384 | MS.gene55262:CDS | 35.0% | |
GATACGCTTATGTAAAAGCT+TGG | - | chr5.2:31237508-31237527 | None:intergenic | 35.0% | |
GATGAACATTTGTATCCTCA+GGG | + | chr5.2:31239618-31239637 | MS.gene55262:CDS | 35.0% | |
GTTCTATCATAGAGATGTAG+AGG | + | chr5.2:31239242-31239261 | MS.gene55262:intron | 35.0% | |
TACAATCTAGTTGAATCGGA+TGG | + | chr5.2:31237117-31237136 | MS.gene55262:intron | 35.0% | |
TCAAAGATATTAGCAGCACA+AGG | - | chr5.2:31239600-31239619 | None:intergenic | 35.0% | |
TCAACTAACCTCACAAGAAA+GGG | + | chr5.2:31236653-31236672 | MS.gene55262:CDS | 35.0% | |
TCCTAAATATCACGGGAAAA+AGG | + | chr5.2:31236269-31236288 | MS.gene55262:intron | 35.0% | |
TCTTAAAACCTACACTCCTT+TGG | + | chr5.2:31235753-31235772 | MS.gene55262:intron | 35.0% | |
TGATGAACATTTGTATCCTC+AGG | + | chr5.2:31239617-31239636 | MS.gene55262:CDS | 35.0% | |
TGATTAATACCTATGAGGCA+CGG | - | chr5.2:31239133-31239152 | None:intergenic | 35.0% | |
TGGAACCATATCAATTGAAC+CGG | + | chr5.2:31237137-31237156 | MS.gene55262:intron | 35.0% | |
TGTATAAGCACCATCATCTA+AGG | - | chr5.2:31235642-31235661 | None:intergenic | 35.0% | |
TTACTTTGTCCTTCACTAAC+TGG | + | chr5.2:31237456-31237475 | MS.gene55262:intron | 35.0% | |
TTGCTAAATTAGTTGGAGCA+GGG | - | chr5.2:31236993-31237012 | None:intergenic | 35.0% | |
TTGGATTTGTCAATCCAGAT+GGG | + | chr5.2:31235772-31235791 | MS.gene55262:intron | 35.0% | |
TTTGGATTTGTCAATCCAGA+TGG | + | chr5.2:31235771-31235790 | MS.gene55262:intron | 35.0% | |
TTTGTCCCTCCTAAATATCA+CGG | + | chr5.2:31236261-31236280 | MS.gene55262:intron | 35.0% | |
! | ACCTTTTTCCCGTGATATTT+AGG | - | chr5.2:31236273-31236292 | None:intergenic | 35.0% |
! | AGATTAGTCGATCGTTATAC+CGG | + | chr5.2:31238613-31238632 | MS.gene55262:intron | 35.0% |
! | CGACTTTTCACTCAATTGTA+TGG | + | chr5.2:31236130-31236149 | MS.gene55262:intron | 35.0% |
! | TCTAGGGTACAATGAAACAT+AGG | - | chr5.2:31237788-31237807 | None:intergenic | 35.0% |
! | TTTTCCCGTGATATTTAGGA+GGG | - | chr5.2:31236269-31236288 | None:intergenic | 35.0% |
! | TTTTTCCCGTGATATTTAGG+AGG | - | chr5.2:31236270-31236289 | None:intergenic | 35.0% |
!! | AACTTTGAAGCACCTAAACA+AGG | + | chr5.2:31239528-31239547 | MS.gene55262:CDS | 35.0% |
!! | ACATTATTCGGTGCCAATTT+CGG | + | chr5.2:31238518-31238537 | MS.gene55262:intron | 35.0% |
!! | ACTTTGAAGCACCTAAACAA+GGG | + | chr5.2:31239529-31239548 | MS.gene55262:CDS | 35.0% |
!! | CAAAGGCATCATCATCTAAT+GGG | + | chr5.2:31235963-31235982 | MS.gene55262:intron | 35.0% |
!! | TTACACCGGTTCAATTGATA+TGG | - | chr5.2:31237145-31237164 | None:intergenic | 35.0% |
!!! | AAGGAGTGTAGGTTTTAAGA+AGG | - | chr5.2:31235753-31235772 | None:intergenic | 35.0% |
!!! | AGCTCGCTCTAGTTTTAAAT+GGG | + | chr5.2:31238558-31238577 | MS.gene55262:intron | 35.0% |
!!! | CTGTTGATGACTCATTTTGT+AGG | - | chr5.2:31238247-31238266 | None:intergenic | 35.0% |
ACCAGTTGAACAAGCCAATT+CGG | - | chr5.2:31237049-31237068 | None:intergenic | 40.0% | |
ACTTGTGGAAAATTTCCCTG+AGG | - | chr5.2:31239636-31239655 | None:intergenic | 40.0% | |
AGAAGCAAACTTGAGTCTTC+AGG | - | chr5.2:31238324-31238343 | None:intergenic | 40.0% | |
AGCATCTTCAATCTCTGTCT+TGG | + | chr5.2:31238265-31238284 | MS.gene55262:CDS | 40.0% | |
ATCACGGGAAAAAGGTCATT+GGG | + | chr5.2:31236277-31236296 | MS.gene55262:intron | 40.0% | |
ATGGAATTGCCAACCGAAAT+TGG | - | chr5.2:31238534-31238553 | None:intergenic | 40.0% | |
ATGGTGCATACAAGCAATTG+TGG | - | chr5.2:31236027-31236046 | None:intergenic | 40.0% | |
ATTTCACCATCCATTTGTGG+AGG | - | chr5.2:31238584-31238603 | None:intergenic | 40.0% | |
CATGGTTGGACTTCTAATTC+AGG | + | chr5.2:31239573-31239592 | MS.gene55262:CDS | 40.0% | |
CTCAACTAACCTCACAAGAA+AGG | + | chr5.2:31236652-31236671 | MS.gene55262:CDS | 40.0% | |
GGAAAACCTTCATTATGCAC+AGG | + | chr5.2:31235364-31235383 | MS.gene55262:CDS | 40.0% | |
GGATTATTCATCCCTGTAAC+TGG | - | chr5.2:31239471-31239490 | None:intergenic | 40.0% | |
GGTTCAACAAGCTCATCATT+TGG | + | chr5.2:31239264-31239283 | MS.gene55262:CDS | 40.0% | |
GTGAATCCAAAATGCACTTG+TGG | - | chr5.2:31239651-31239670 | None:intergenic | 40.0% | |
TATCACGGGAAAAAGGTCAT+TGG | + | chr5.2:31236276-31236295 | MS.gene55262:intron | 40.0% | |
TATTCATCCCTGTAACTGGT+TGG | - | chr5.2:31239467-31239486 | None:intergenic | 40.0% | |
TCAATTGAACCGGTGTAACA+TGG | + | chr5.2:31237147-31237166 | MS.gene55262:intron | 40.0% | |
TCACAATGATATAGGGCCAA+AGG | + | chr5.2:31235946-31235965 | MS.gene55262:intron | 40.0% | |
TCATCATGGGCTTAAGATGA+TGG | + | chr5.2:31235669-31235688 | MS.gene55262:intron | 40.0% | |
TCATCTTAAGCCCATGATGA+TGG | - | chr5.2:31235669-31235688 | None:intergenic | 40.0% | |
TCTCTGTCTTGGATGGTTAA+TGG | + | chr5.2:31238276-31238295 | MS.gene55262:CDS | 40.0% | |
TCTTCAATCTCTGTCTTGGA+TGG | + | chr5.2:31238269-31238288 | MS.gene55262:CDS | 40.0% | |
TGAGATTGCGGTAGAAAATG+TGG | + | chr5.2:31236303-31236322 | MS.gene55262:intron | 40.0% | |
TGCACAAATCCAGTTAGTGA+AGG | - | chr5.2:31237468-31237487 | None:intergenic | 40.0% | |
TGCTACATTCACCAAAGTAG+AGG | - | chr5.2:31236605-31236624 | None:intergenic | 40.0% | |
TGGTGAATGTAGCAACTTTG+AGG | + | chr5.2:31236611-31236630 | MS.gene55262:intron | 40.0% | |
TGGTTCCATCACACTTGAAT+CGG | - | chr5.2:31237253-31237272 | None:intergenic | 40.0% | |
TTCACTAACTGGATTTGTGC+AGG | + | chr5.2:31237467-31237486 | MS.gene55262:intron | 40.0% | |
TTGCAGTAGTCAAACTGTTG+AGG | + | chr5.2:31237386-31237405 | MS.gene55262:intron | 40.0% | |
TTGTCCCTCCTAAATATCAC+GGG | + | chr5.2:31236262-31236281 | MS.gene55262:intron | 40.0% | |
TTTAAATGGGCCTCCACAAA+TGG | + | chr5.2:31238571-31238590 | MS.gene55262:intron | 40.0% | |
! | CATAATGAAGGTTTTCCACC+TGG | - | chr5.2:31235361-31235380 | None:intergenic | 40.0% |
! | CCATTAGATGATGATGCCTT+TGG | - | chr5.2:31235965-31235984 | None:intergenic | 40.0% |
! | CTTCTTATGTTTTCTCCAGG+TGG | + | chr5.2:31235343-31235362 | MS.gene55262:CDS | 40.0% |
! | GACTGATCAAACCCTTGTTT+AGG | - | chr5.2:31239543-31239562 | None:intergenic | 40.0% |
! | GGAATTGAAAGCGTGTAACA+AGG | - | chr5.2:31235571-31235590 | None:intergenic | 40.0% |
! | TATTAGGTGTGTTTCGGTGT+AGG | + | chr5.2:31238985-31239004 | MS.gene55262:intron | 40.0% |
! | TGAATGTAGCAACTTTGAGG+AGG | + | chr5.2:31236614-31236633 | MS.gene55262:intron | 40.0% |
! | TGACAAATCCAAAGGAGTGT+AGG | - | chr5.2:31235764-31235783 | None:intergenic | 40.0% |
!! | CCAAAGGCATCATCATCTAA+TGG | + | chr5.2:31235962-31235981 | MS.gene55262:intron | 40.0% |
!! | TTTTGAAAACCGGACCGAAT+TGG | + | chr5.2:31237032-31237051 | MS.gene55262:intron | 40.0% |
!!! | GAGCTCGCTCTAGTTTTAAA+TGG | + | chr5.2:31238557-31238576 | MS.gene55262:intron | 40.0% |
AAACTAGAGCGAGCTCTGTA+TGG | - | chr5.2:31238553-31238572 | None:intergenic | 45.0% | |
AACCTTCATTATGCACAGGG+AGG | + | chr5.2:31235368-31235387 | MS.gene55262:CDS | 45.0% | |
AATAAAGCCGACGAGCGAAT+TGG | - | chr5.2:31237087-31237106 | None:intergenic | 45.0% | |
ATGAAGCTCCAACCAGTTAC+AGG | + | chr5.2:31239456-31239475 | MS.gene55262:CDS | 45.0% | |
CCAGTGAGACTTGCAAATCA+TGG | - | chr5.2:31237273-31237292 | None:intergenic | 45.0% | |
CTTGTTGCCCCATCAAAACT+TGG | - | chr5.2:31235592-31235611 | None:intergenic | 45.0% | |
GCAGCTTTCTTGACCAGAAT+TGG | - | chr5.2:31239334-31239353 | None:intergenic | 45.0% | |
GCAGTTGAACCATGTTACAC+CGG | - | chr5.2:31237159-31237178 | None:intergenic | 45.0% | |
GGTGTAACATGGTTCAACTG+CGG | + | chr5.2:31237158-31237177 | MS.gene55262:intron | 45.0% | |
TAACATGGTTCAACTGCGGT+TGG | + | chr5.2:31237162-31237181 | MS.gene55262:intron | 45.0% | |
TCCATCACACTTGAATCGGA+TGG | - | chr5.2:31237249-31237268 | None:intergenic | 45.0% | |
TGAAGCTCCAACCAGTTACA+GGG | + | chr5.2:31239457-31239476 | MS.gene55262:CDS | 45.0% | |
TGTCGCGTTTCACAAAAGCA+CGG | + | chr5.2:31236208-31236227 | MS.gene55262:intron | 45.0% | |
TGTGGATAAACTGGGACAGT+TGG | + | chr5.2:31237711-31237730 | MS.gene55262:CDS | 45.0% | |
TTGAACAAGCCAATTCGGTC+CGG | - | chr5.2:31237044-31237063 | None:intergenic | 45.0% | |
! | AAGACGGTGTTTTTCCCATC+TGG | - | chr5.2:31235789-31235808 | None:intergenic | 45.0% |
! | CATCTAAGGCTAGATTCGCA+TGG | - | chr5.2:31235628-31235647 | None:intergenic | 45.0% |
! | CCATGATTTGCAAGTCTCAC+TGG | + | chr5.2:31237270-31237289 | MS.gene55262:intron | 45.0% |
! | GAAAGCGTGTAACAAGGCAA+AGG | - | chr5.2:31235565-31235584 | None:intergenic | 45.0% |
! | GGTGCACACTTTTATGCACT+TGG | + | chr5.2:31235690-31235709 | MS.gene55262:intron | 45.0% |
!! | ACCGAATTGGCTTGTTCAAC+TGG | + | chr5.2:31237045-31237064 | MS.gene55262:intron | 45.0% |
!! | CAAGTTTTGATGGGGCAACA+AGG | + | chr5.2:31235590-31235609 | MS.gene55262:intron | 45.0% |
!! | CACTGGTTCGATCTCATATC+TGG | + | chr5.2:31237287-31237306 | MS.gene55262:intron | 45.0% |
!! | GCGAATCTAGCCTTAGATGA+TGG | + | chr5.2:31235629-31235648 | MS.gene55262:intron | 45.0% |
!! | TATTCGGTGCCAATTTCGGT+TGG | + | chr5.2:31238522-31238541 | MS.gene55262:intron | 45.0% |
AATGGGCCTCCACAAATGGA+TGG | + | chr5.2:31238575-31238594 | MS.gene55262:intron | 50.0% | |
ACGGACATAGACACAGACAC+CGG | - | chr5.2:31239114-31239133 | None:intergenic | 50.0% | |
CCTCACAAGAAAGGGCAAAG+AGG | + | chr5.2:31236661-31236680 | MS.gene55262:CDS | 50.0% | |
CCTCTTTGCCCTTTCTTGTG+AGG | - | chr5.2:31236664-31236683 | None:intergenic | 50.0% | |
GCCATCCGATTCAAGTGTGA+TGG | + | chr5.2:31237245-31237264 | MS.gene55262:intron | 50.0% | |
GTCATTGGGACGTGAGATTG+CGG | + | chr5.2:31236291-31236310 | MS.gene55262:intron | 50.0% | |
TGTCTATGTCCGTGCCTCAT+AGG | + | chr5.2:31239121-31239140 | MS.gene55262:intron | 50.0% | |
! | TTTCGGTGTAGGACACGTGT+CGG | + | chr5.2:31238996-31239015 | MS.gene55262:intron | 50.0% |
AAGCCGACGAGCGAATTGGT+TGG | - | chr5.2:31237083-31237102 | None:intergenic | 55.0% | |
CGCCTCCCTGTGCATAATGA+AGG | - | chr5.2:31235373-31235392 | None:intergenic | 55.0% | |
GAGCCAACCAATTCGCTCGT+CGG | + | chr5.2:31237077-31237096 | MS.gene55262:intron | 55.0% | |
TCGGTTGTTCGTGTCGTGTC+CGG | + | chr5.2:31239092-31239111 | MS.gene55262:intron | 55.0% | |
! | CGAGCGAATTGGTTGGCTCA+TGG | - | chr5.2:31237076-31237095 | None:intergenic | 55.0% |
! | CGCGTTTCACAAAAGCACGG+TGG | + | chr5.2:31236211-31236230 | MS.gene55262:intron | 55.0% |
! | CATTATGCACAGGGAGGCGC+AGG | + | chr5.2:31235374-31235393 | MS.gene55262:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 31235295 | 31239674 | 31235295 | ID=MS.gene55262 |
chr5.2 | mRNA | 31235295 | 31239674 | 31235295 | ID=MS.gene55262.t1;Parent=MS.gene55262 |
chr5.2 | exon | 31235295 | 31235395 | 31235295 | ID=MS.gene55262.t1.exon1;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31235295 | 31235395 | 31235295 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31236623 | 31236682 | 31236623 | ID=MS.gene55262.t1.exon2;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31236623 | 31236682 | 31236623 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31236783 | 31236801 | 31236783 | ID=MS.gene55262.t1.exon3;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31236783 | 31236801 | 31236783 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31236920 | 31236984 | 31236920 | ID=MS.gene55262.t1.exon4;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31236920 | 31236984 | 31236920 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31237392 | 31237407 | 31237392 | ID=MS.gene55262.t1.exon5;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31237392 | 31237407 | 31237392 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31237489 | 31237550 | 31237489 | ID=MS.gene55262.t1.exon6;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31237489 | 31237550 | 31237489 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31237681 | 31237777 | 31237681 | ID=MS.gene55262.t1.exon7;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31237681 | 31237777 | 31237681 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31238078 | 31238125 | 31238078 | ID=MS.gene55262.t1.exon8;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31238078 | 31238125 | 31238078 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31238225 | 31238349 | 31238225 | ID=MS.gene55262.t1.exon9;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31238225 | 31238349 | 31238225 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
chr5.2 | exon | 31239254 | 31239674 | 31239254 | ID=MS.gene55262.t1.exon10;Parent=MS.gene55262.t1 |
chr5.2 | CDS | 31239254 | 31239674 | 31239254 | ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1 |
Gene Sequence |
Protein sequence |