AlfalfaGEDB | MS.gene55262

M. sativa cultivar XinJiangDaYe / MS.gene55262

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55262.t1	AES96803.2	98.8	337	4	0	1	337	66	402	1.10E-185	659.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55262.t1	Q1PFA4	44.9	350	167	8	1	326	29	376	6.5e-65	249.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55262.t1	G7KGN7	98.8	337	4	0	1	337	66	402	8.1e-186	659.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene55262.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55262.t1	MTR_5g041650	98.813	337	4	0	1	337	66	402	0.0	694
MS.gene55262.t1	MTR_4g108720	47.164	335	157	7	1	324	29	354	5.63e-93	281
MS.gene55262.t1	MTR_3g102570	29.032	155	91	5	1	145	29	174	5.66e-13	68.9
MS.gene55262.t1	MTR_4g084740	29.878	164	100	5	1	150	29	191	4.74e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55262.t1	AT2G03060	43.662	355	164	7	1	326	29	376	1.19e-80	251
MS.gene55262.t1	AT2G03060	43.454	359	167	7	1	330	29	380	1.28e-80	250
MS.gene55262.t1	AT2G03060	43.454	359	167	7	1	330	29	380	1.28e-80	250
MS.gene55262.t1	AT2G03060	43.454	359	167	7	1	330	29	380	1.28e-80	250
MS.gene55262.t1	AT1G18750	51.055	237	104	5	1	229	29	261	9.71e-69	220
MS.gene55262.t1	AT1G18750	51.055	237	104	5	1	229	29	261	1.20e-68	220
MS.gene55262.t1	AT1G69540	41.298	339	157	14	1	324	29	340	1.05e-64	208
MS.gene55262.t1	AT1G69540	41.298	339	157	14	1	324	29	340	4.60e-64	207
MS.gene55262.t1	AT1G18750	44.815	270	104	6	1	229	29	294	8.22e-62	203
MS.gene55262.t1	AT1G18750	48.402	219	101	5	19	229	1	215	3.61e-57	188

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Find 53 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACATGTCCAATTC+TGG	0.404031	5.2:+31239318	MS.gene55262:CDS
AAATGTACAAAAGCAACAAC+TGG	0.484094	5.2:+31238080	MS.gene55262:CDS
AACCTTCATTATGCACAGGG+AGG	0.717217	5.2:+31235368	MS.gene55262:CDS
AACTTTGAAGCACCTAAACA+AGG	0.556172	5.2:+31239528	MS.gene55262:CDS
AATTAGTAGTGTGGATAAAC+TGG	0.285333	5.2:+31237702	MS.gene55262:CDS
ACAGTTGGAAAATTCACTCA+AGG	0.626422	5.2:+31237726	MS.gene55262:CDS
ACTTGTGGAAAATTTCCCTG+AGG	0.756884	5.2:-31239633	None:intergenic
ACTTTGAAGCACCTAAACAA+GGG	0.617044	5.2:+31239529	MS.gene55262:CDS
AGAAGCAAACTTGAGTCTTC+AGG	0.422149	5.2:-31238321	None:intergenic
AGAATTGGACATGTTTGTTT+TGG	0.326734	5.2:-31239316	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAACATGTCCAATTC+TGG	+	chr5.2:31239318-31239337	MS.gene55262:CDS	30.0%
AAACACACTTATAGCATGTT+TGG	-	chr5.2:31236331-31236350	None:intergenic	30.0%
AAACATGCTATAAGTGTGTT+TGG	+	chr5.2:31236330-31236349	MS.gene55262:intron	30.0%
AAATGTACAAAAGCAACAAC+TGG	+	chr5.2:31238080-31238099	MS.gene55262:CDS	30.0%
AAGAAAAAACAACTCACTTG+TGG	-	chr5.2:31238347-31238366	None:intergenic	30.0%
AATTAGTAGTGTGGATAAAC+TGG	+	chr5.2:31237702-31237721	MS.gene55262:CDS	30.0%
AATTATTGTCTCCTCTACTT+TGG	+	chr5.2:31236591-31236610	MS.gene55262:intron	30.0%
ACAAAGACACTCCTAATATT+AGG	+	chr5.2:31238969-31238988	MS.gene55262:intron	30.0%
ACGGTCATATTATGAAGATT+TGG	-	chr5.2:31236089-31236108	None:intergenic	30.0%
AGAGGCAAATAAAATCATAG+TGG	+	chr5.2:31238474-31238493	MS.gene55262:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	31235295	31239674	31235295	ID=MS.gene55262
chr5.2	mRNA	31235295	31239674	31235295	ID=MS.gene55262.t1;Parent=MS.gene55262
chr5.2	exon	31235295	31235395	31235295	ID=MS.gene55262.t1.exon1;Parent=MS.gene55262.t1
chr5.2	CDS	31235295	31235395	31235295	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31236623	31236682	31236623	ID=MS.gene55262.t1.exon2;Parent=MS.gene55262.t1
chr5.2	CDS	31236623	31236682	31236623	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31236783	31236801	31236783	ID=MS.gene55262.t1.exon3;Parent=MS.gene55262.t1
chr5.2	CDS	31236783	31236801	31236783	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31236920	31236984	31236920	ID=MS.gene55262.t1.exon4;Parent=MS.gene55262.t1
chr5.2	CDS	31236920	31236984	31236920	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31237392	31237407	31237392	ID=MS.gene55262.t1.exon5;Parent=MS.gene55262.t1
chr5.2	CDS	31237392	31237407	31237392	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31237489	31237550	31237489	ID=MS.gene55262.t1.exon6;Parent=MS.gene55262.t1
chr5.2	CDS	31237489	31237550	31237489	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31237681	31237777	31237681	ID=MS.gene55262.t1.exon7;Parent=MS.gene55262.t1
chr5.2	CDS	31237681	31237777	31237681	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31238078	31238125	31238078	ID=MS.gene55262.t1.exon8;Parent=MS.gene55262.t1
chr5.2	CDS	31238078	31238125	31238078	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31238225	31238349	31238225	ID=MS.gene55262.t1.exon9;Parent=MS.gene55262.t1
chr5.2	CDS	31238225	31238349	31238225	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1
chr5.2	exon	31239254	31239674	31239254	ID=MS.gene55262.t1.exon10;Parent=MS.gene55262.t1
chr5.2	CDS	31239254	31239674	31239254	ID=cds.MS.gene55262.t1;Parent=MS.gene55262.t1

Gene Sequence

>MS.gene55262

ATGAAGAAAGCAAGTGAATTATCTATATTGTGTGATATAGATATTATACTTCTTATGTTTTCTCCAGGTGGAAAACCTTCATTATGCACAGGGAGGCGCAGGTATATATTTTTGATTAATTTGTTGTTATGTAACAAATAATGTAAATGGGTTTAAGGAAACTTTGCTAAGTGTATGTTTGTTAGAACACCAATAAGGCATTTATTTGTTTGTTGGAGACATAATTGATGGTTACTAGTAATTGACTGCATCAAATAGTTAAACTTTCCTTTGCCTTGTTACACGCTTTCAATTCCAAGTTTTGATGGGGCAACAAGGCAAGCAATTTCACCATGCGAATCTAGCCTTAGATGATGGTGCTTATACACTTTCCATCATCATGGGCTTAAGATGATGGTGCACACTTTTATGCACTTGGACTAGAATTAGATTTTCAAGTATGAGAGCTATTTTTACCTTCTTAAAACCTACACTCCTTTGGATTTGTCAATCCAGATGGGAAAAACACCGTCTTTTTTCACGTTTGTCTGTGTAAATTCAAAAAGAAGATGGTGTTTTTTCTTATATGGATTGACAAATTTAAAGGTGGTCGATTTTTACATAGTAGAAGGATGGGAGAAGAAGCTTTCTTCAATGACCATTACAAATTGATCACAATGATATAGGGCCAAAGGCATCATCATCTAATGGGTCATAATTAACATTAGCATAGCTTTAGAAAAAGGAAAACCACAATTGCTTGTATGCACCATGAATTATTACTATTTGAAACAAAATTCTAATATTGGCATCCAAATCTTCATAATATGACCGTGATTTTTAGCAGTTAGATTTTCGACTTTTCACTCAATTGTATGGTAACTTTGCAATCCCAAGAAAATCCAAACATATGCTAAGTGTTCGTTTGGTATTGTGTCGCGTTTCACAAAAGCACGGTGGTTTTTCATCGTGACGCAGATGCTTACATTTGTCCCTCCTAAATATCACGGGAAAAAGGTCATTGGGACGTGAGATTGCGGTAGAAAATGTGGAACCAAACATGCTATAAGTGTGTTTGGATGCATGTTTTTCTTATTCTTTCTCGCTTCACTATGCATTCTCTCCGTGAAATTTTAGAAGTTACAAAAAAAGTGTGAATGATTAAAATTTTCCAAACATACATAAGTAATGATAATTCCTAATTGCTTTGATTATTTTGATTATTATTAGAGCATTCAATGACATGAATTCCTAATGTTAGTTTTACTATTGATATATGTTTGTTTTACAAGGATTGTCATTACTTGTCTAATAGTAAATTATTGTCTCCTCTACTTTGGTGAATGTAGCAACTTTGAGGAGGTGATTGCAAAGTTTGCTCAACTAACCTCACAAGAAAGGGCAAAGAGGTACAGTTAAAATCACTTGAGACAAGACAAATGATTTATGCATTGTTATCCTAAATACATTAGAATTTGATAAAAACTTTCTCCAATTGAATTTTAACAGGAAATTGGAGAGTCTTGAAGTAAGTCACTTTCTTACAATTCATTCTCAATACTCAAATATACATCTCTCTTTTTTGGTTTGAAAGCAAGAATTTTTTCCTCATTCATTTTTAGTAATGATTTTTTGTTTGAGGTCAGGCACTAAAGAAAACATTTAAGAAGTTAGATCATGATGTGAATATACAAGACTTTTATGGTACAAGGTATGCCCTGCTCCAACTAATTTAGCAATGTGTCGACAATATCAATGTTTTGAAAACCGGACCGAATTGGCTTGTTCAACTGGTTGAACCATGAGCCAACCAATTCGCTCGTCGGCTTTATTCCAGTTATACTACAATCTAGTTGAATCGGATGGAACCATATCAATTGAACCGGTGTAACATGGTTCAACTGCGGTTGGTCCAACCATTTTTTATTTACTTTTTAACTTTTCTAATCTTTTTTACTTCTAAATTTGTTTGCCATCCGATTCAAGTGTGATGGAACCATGATTTGCAAGTCTCACTGGTTCGATCTCATATCTGGTTTCGAAAACATTGATCAATACATTCAACCATTTATTTCACCAAGTTGAGACACTAAAATATTCTTTGTTTTTTTGTTGCAGTAGTCAAACTGTTGAGGTAAACATCTGAATTACTTTTTTTTCCTTCACATTTTCTCATTCAATGTTACTTTGTCCTTCACTAACTGGATTTGTGCAGGATTTGAGTGATCAAGCCAAGCTTTTACATAAGCGTATCTCCGAAATTCATGAGAGATTAAGGTGCATTTTATTAATTTTTATTTGTATAATCTATAGTTTCACACTAATAAATTTGTTTTATGATGAACATGTCCTTTAGTTACATCTTGCAAGCTAATCTCAAAAAAAATGTTTTTGTTGTATTTTGCAGCAATTGGTCTGACATTGAAAAAATTAGTAGTGTGGATAAACTGGGACAGTTGGAAAATTCACTCAAGGAGTCTCTTAATCAAATTCAAACTCATAAGGTATGTACCTATGTTTCATTGTACCCTAGACATTATGAAAAATGTTTTTAATTGATTAAGTGGAGAATCAAGGTTTTGAACTTAGTTGATTTGTTTTGATATTAACTATAGAATGTTTTCATAAGCTATCCTGAACAGTTTACCAAATTAAGCCTAAAACAGTTTATAGATATATCATAAGTTGTTTAGATATATTTATATCAGCAGATAAACTCAAATAAGTTAATGCAAGCGTAACACATATACTATCCTCAATAATGCAGCATTTAAATTATAGGCTAATTCTTCCTACTTTGATAGGAAAATGTACAAAAGCAACAACTGGCATCTTTGCAATGCAATAATCAGGTAAAGAACTGTTTTAGGGTAATTAATTTTCTTTTGTTTTTTAAACTTGTTCTCATGATATGAATATTAAAACATGGCTGAAATATCTGTATCTTTTAGTTCAATGAATTGCAGCTTCCCTACAAAATGAGTCATCAACAGCATCTTCAATCTCTGTCTTGGATGGTTAATGGTGACAGCCAGAATTTAGTGTTACCTGAAGACTCAAGTTTGCTTCTCCACAAGTGAGTTGTTTTTTCTTAAGTATATGTATTGAATGCTTCAAAACACTATCCTTGTTATTCTGATTTTTGAGTTTGCTTAATCATTTTGGTAGTAAGTTAAAGTTGAAATTATTCTAGTTACAACAGAGGCAAATAAAATCATAGTGGAATTGATGAATCGTATAATAAACATTATTCGGTGCCAATTTCGGTTGGCAATTCCATACAGAGCTCGCTCTAGTTTTAAATGGGCCTCCACAAATGGATGGTGAAATTTGACCTTCAGATTAGTCGATCGTTATACCGGTTACTGAGTTTTCAAAAAAAAAATAATAATAATAAATATTGTCTCTGTCTAAAACTTATAGGCTTAAAGATATTTTAGCCAATGAAAATATATAAATTTTCACTTTTAATCCTTGTAAACACAAGTTTTTGTTTTGTTCTAGTAATATTTGTTTATGCTTGAATTAGTCCTTACTTATAGTCACGTGTTATGAACATAAGTTAATTTAGTCCACATTTTTAGGGATTAAAACCAACATCAACAAATATGACAGAGACTCAAACTAAAACAAAAAAGCAATTCTACATGCATCTTAGAGACTACCTTTACAGATCATTTGTATTAATCAACGAAACAAAGACACTCCTAATATTAGGTGTGTTTCGGTGTAGGACACGTGTCGGTGTTTGATACTGACGTCGACACGACACCTATAATTACACTGAGTTATGTCAATTTCTCAAATTATTATCTATGTCGGTTGTTCGTGTCGTGTCCGGTGTCTGTGTCTATGTCCGTGCCTCATAGGTATTAATCAATAAAATTGATCATGGTGGTGTTTTTTATTTATATTAAATTGAATATCTTTCAATATTTGTTTCTAACTTTACTTATCAAACTTATTTTGTTCTATCATAGAGATGTAGAGGGTTCAACAAGCTCATCATTTGGAAGCTATGCTAGTTATCTTGGCTCAAGTACCAAAACAAACATGTCCAATTCTGGTCAAGAAAGCTGCATCATTAATGACATGAGCAATACTACTACTGCTCCAGTGAGACTACAACAATTTAATGGACAAGTTCCATACATACCAAACAATTTCAACATTATGAATGATATGAAGCTCCAACCAGTTACAGGGATGAATAATCCACATGAAAATCAAGTAGATAATTATCATGTCAATGCAAACTTTGAAGCACCTAAACAAGGGTTTGATCAGTCTAATAATCATCATGGTTGGACTTCTAATTCAGGTCCTTGTGCTGCTAATATCTTTGATGAACATTTGTATCCTCAGGGAAATTTTCCACAAGTGCATTTTGGATTCACATAG

Protein sequence

>MS.gene55262.t1

MKKASELSILCDIDIILLMFSPGGKPSLCTGRRSNFEEVIAKFAQLTSQERAKRKLESLEALKKTFKKLDHDVNIQDFYGTSSQTVEDLSDQAKLLHKRISEIHERLSNWSDIEKISSVDKLGQLENSLKESLNQIQTHKENVQKQQLASLQCNNQFNELQLPYKMSHQQHLQSLSWMVNGDSQNLVLPEDSSLLLHKDVEGSTSSSFGSYASYLGSSTKTNMSNSGQESCIINDMSNTTTAPVRLQQFNGQVPYIPNNFNIMNDMKLQPVTGMNNPHENQVDNYHVNANFEAPKQGFDQSNNHHGWTSNSGPCAANIFDEHLYPQGNFPQVHFGFT