AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55277

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55277.t1 MTR_5g042030 92.042 289 21 2 1 287 1 289 1.38e-177 491
MS.gene55277.t1 MTR_4g082230 40.606 330 119 6 7 259 12 341 6.01e-75 234
MS.gene55277.t1 MTR_4g082290 40.361 332 121 6 5 259 10 341 4.89e-72 227
MS.gene55277.t1 MTR_7g011170 62.346 162 56 2 5 161 10 171 3.79e-71 222
MS.gene55277.t1 MTR_6g012690 63.226 155 49 1 5 151 10 164 2.19e-70 221
MS.gene55277.t1 MTR_8g031360 57.692 156 59 2 5 153 11 166 3.22e-61 196
MS.gene55277.t1 MTR_2g011660 69.748 119 36 0 6 124 12 130 3.65e-60 195
MS.gene55277.t1 MTR_4g091490 69.748 119 36 0 6 124 12 130 1.27e-59 194
MS.gene55277.t1 MTR_7g076740 57.051 156 60 2 6 154 11 166 2.98e-59 191
MS.gene55277.t1 MTR_5g029840 66.129 124 42 0 5 128 10 133 7.84e-59 191
MS.gene55277.t1 MTR_3g074520 65.289 121 42 0 6 126 11 131 1.59e-58 191
MS.gene55277.t1 MTR_4g478180 64.706 119 42 0 6 124 12 130 2.01e-56 185
MS.gene55277.t1 MTR_1g100653 51.807 166 75 1 6 171 11 171 2.43e-56 183
MS.gene55277.t1 MTR_2g089620 56.863 153 53 2 6 158 11 150 3.18e-56 184
MS.gene55277.t1 MTR_5g007370 62.810 121 45 0 6 126 11 131 2.22e-55 181
MS.gene55277.t1 MTR_1g085040 63.566 129 47 0 7 135 12 140 8.07e-55 182
MS.gene55277.t1 MTR_1g085640 63.566 129 45 1 7 133 12 140 2.03e-54 181
MS.gene55277.t1 MTR_4g073420 52.469 162 76 1 10 170 15 176 2.89e-54 177
MS.gene55277.t1 MTR_7g110830 61.194 134 52 0 7 140 12 145 4.72e-54 179
MS.gene55277.t1 MTR_3g461490 61.667 120 46 0 7 126 12 131 1.15e-52 175
MS.gene55277.t1 MTR_4g102380 63.025 119 44 0 5 123 10 128 1.22e-52 173
MS.gene55277.t1 MTR_7g111290 64.615 130 46 0 7 136 12 141 1.34e-52 176
MS.gene55277.t1 MTR_1g112760 45.960 198 92 3 7 201 13 198 1.66e-52 171
MS.gene55277.t1 MTR_2g064160 63.478 115 42 0 7 121 11 125 8.75e-52 172
MS.gene55277.t1 MTR_8g095390 66.667 114 38 0 10 123 15 128 1.56e-51 171
MS.gene55277.t1 MTR_4g105130 64.103 117 42 0 7 123 12 128 2.49e-51 172
MS.gene55277.t1 MTR_3g077110 63.636 121 44 0 7 127 12 132 2.93e-51 172
MS.gene55277.t1 MTR_5g078140 58.915 129 53 0 5 133 10 138 1.58e-50 169
MS.gene55277.t1 MTR_3g065440 62.295 122 46 0 5 126 10 131 6.29e-50 167
MS.gene55277.t1 MTR_5g079670 62.069 116 44 0 7 122 11 126 7.64e-50 164
MS.gene55277.t1 MTR_1g043080 66.355 107 36 0 6 112 11 117 1.64e-49 164
MS.gene55277.t1 MTR_3g097450 64.602 113 40 0 10 122 15 127 2.47e-49 165
MS.gene55277.t1 MTR_1g076150 66.355 107 36 0 5 111 10 116 2.72e-49 164
MS.gene55277.t1 MTR_2g089450 66.667 108 36 0 6 113 11 118 4.51e-49 163
MS.gene55277.t1 MTR_1g043050 66.355 107 36 0 6 112 11 117 1.34e-48 162
MS.gene55277.t1 MTR_7g115650 61.682 107 41 0 5 111 10 116 8.73e-48 159
MS.gene55277.t1 MTR_3g083540 57.983 119 50 0 5 123 39 157 9.66e-48 161
MS.gene55277.t1 MTR_6g009430 48.966 145 61 1 7 138 12 156 9.72e-48 162
MS.gene55277.t1 MTR_4g485530 62.500 112 42 0 10 121 15 126 1.24e-47 157
MS.gene55277.t1 MTR_2g089420 44.845 194 94 3 6 199 10 190 1.39e-47 165
MS.gene55277.t1 MTR_0008s0390 64.486 107 38 0 6 112 12 118 1.52e-47 160
MS.gene55277.t1 MTR_7g096930 65.421 107 37 0 5 111 10 116 2.21e-47 160
MS.gene55277.t1 MTR_0008s0470 63.551 107 39 0 6 112 12 118 3.91e-47 159
MS.gene55277.t1 MTR_2g067420 69.697 99 30 0 7 105 14 112 7.43e-47 160
MS.gene55277.t1 MTR_0251s0050 63.208 106 39 0 6 111 12 117 2.03e-46 157
MS.gene55277.t1 MTR_8g027345 61.017 118 41 1 1 113 1 118 4.51e-46 157
MS.gene55277.t1 MTR_3g039990 40.884 181 96 2 5 180 11 185 5.08e-46 157
MS.gene55277.t1 MTR_7g117730 61.682 107 41 0 5 111 10 116 1.57e-45 154
MS.gene55277.t1 MTR_2g099740 61.404 114 44 0 7 120 12 125 2.79e-45 157
MS.gene55277.t1 MTR_8g017440 60.177 113 45 0 7 119 12 124 5.12e-45 155
MS.gene55277.t1 MTR_4g125520 55.303 132 53 1 6 137 11 136 6.32e-45 154
MS.gene55277.t1 MTR_0140s0030 57.944 107 45 0 5 111 11 117 2.30e-44 154
MS.gene55277.t1 MTR_0489s0020 57.944 107 45 0 5 111 11 117 2.30e-44 154
MS.gene55277.t1 MTR_7g087130 55.556 117 50 1 5 119 10 126 2.37e-44 154
MS.gene55277.t1 MTR_7g010210 57.547 106 45 0 6 111 11 116 3.55e-44 153
MS.gene55277.t1 MTR_8g098860 61.905 105 40 0 7 111 12 116 3.82e-44 152
MS.gene55277.t1 MTR_7g010210 57.547 106 45 0 6 111 11 116 4.17e-44 151
MS.gene55277.t1 MTR_8g017540 60.177 113 45 0 7 119 58 170 4.61e-44 154
MS.gene55277.t1 MTR_4g065017 58.268 127 51 1 7 131 17 143 5.71e-44 152
MS.gene55277.t1 MTR_8g017500 53.788 132 55 1 7 132 12 143 1.18e-43 152
MS.gene55277.t1 MTR_2g097910 63.810 105 38 0 7 111 20 124 2.00e-43 150
MS.gene55277.t1 MTR_4g057635 59.483 116 45 2 7 121 12 126 5.15e-43 150
MS.gene55277.t1 MTR_4g121460 58.879 107 44 0 5 111 10 116 1.01e-42 149
MS.gene55277.t1 MTR_6g012180 60.000 100 40 0 6 105 11 110 1.78e-42 148
MS.gene55277.t1 MTR_1g100667 58.261 115 47 1 8 122 14 127 2.08e-42 147
MS.gene55277.t1 MTR_5g010020 63.636 99 36 0 7 105 12 110 2.14e-42 148
MS.gene55277.t1 MTR_8g017340 62.162 111 41 1 10 119 15 125 3.12e-42 151
MS.gene55277.t1 MTR_1g017140 43.333 180 93 3 7 179 12 189 5.94e-42 147
MS.gene55277.t1 MTR_1g017000 53.226 124 54 3 7 129 12 132 1.42e-41 144
MS.gene55277.t1 MTR_3g028740 61.905 105 40 0 7 111 22 126 2.09e-41 146
MS.gene55277.t1 MTR_0063s0090 61.165 103 40 0 6 108 11 113 3.04e-41 142
MS.gene55277.t1 MTR_5g014990 58.879 107 43 1 7 112 12 118 3.93e-41 144
MS.gene55277.t1 MTR_0008s0280 58.654 104 43 0 6 109 11 114 7.01e-41 141
MS.gene55277.t1 MTR_3g103570 57.009 107 45 1 7 112 12 118 9.69e-41 144
MS.gene55277.t1 MTR_8g017350 61.261 111 42 1 10 119 15 125 1.23e-40 149
MS.gene55277.t1 MTR_2g095520 64.000 100 35 1 7 105 12 111 1.46e-40 143
MS.gene55277.t1 MTR_2g034790 36.564 227 121 4 5 225 10 219 2.27e-40 143
MS.gene55277.t1 MTR_6g055910 58.491 106 44 0 8 113 15 120 3.65e-40 141
MS.gene55277.t1 MTR_3g052450 59.091 110 44 1 7 116 40 148 5.36e-40 146
MS.gene55277.t1 MTR_8g017390 62.500 104 38 1 10 112 15 118 6.43e-40 145
MS.gene55277.t1 MTR_3g052430 59.091 110 44 1 7 116 41 149 6.94e-40 145
MS.gene55277.t1 MTR_7g102110 55.046 109 48 1 7 114 12 120 3.79e-39 138
MS.gene55277.t1 MTR_4g097570 61.616 99 37 1 7 104 12 110 6.66e-39 138
MS.gene55277.t1 MTR_0193s0090 41.618 173 88 2 1 173 1 160 1.69e-38 134
MS.gene55277.t1 MTR_1g073170 52.500 120 53 1 8 127 21 136 2.56e-38 135
MS.gene55277.t1 MTR_4g100720 56.731 104 45 0 7 110 13 116 4.50e-38 132
MS.gene55277.t1 MTR_5g079120 38.418 177 96 3 1 176 55 219 4.55e-38 136
MS.gene55277.t1 MTR_6g090405 56.075 107 46 1 7 112 12 118 8.00e-38 134
MS.gene55277.t1 MTR_8g042410 55.046 109 49 0 2 110 32 140 8.63e-38 140
MS.gene55277.t1 MTR_1g110460 52.252 111 53 0 7 117 26 136 1.06e-37 135
MS.gene55277.t1 MTR_7g111290 67.347 98 32 0 39 136 2 99 1.38e-37 136
MS.gene55277.t1 MTR_3g011610 53.636 110 50 1 7 116 37 145 1.54e-37 139
MS.gene55277.t1 MTR_7g035075 56.190 105 46 0 7 111 14 118 1.79e-37 132
MS.gene55277.t1 MTR_4g097570 61.000 100 37 2 7 104 12 111 2.41e-37 134
MS.gene55277.t1 MTR_8g020490 58.824 102 42 0 10 111 11 112 2.73e-37 133
MS.gene55277.t1 MTR_1g062940 56.190 105 46 0 7 111 6 110 3.27e-37 132
MS.gene55277.t1 MTR_1g086510 51.786 112 54 0 6 117 20 131 6.17e-37 132
MS.gene55277.t1 MTR_5g078860 52.679 112 53 0 1 112 1 112 9.40e-37 133
MS.gene55277.t1 MTR_1g045610 55.340 103 46 0 8 110 22 124 1.01e-36 131
MS.gene55277.t1 MTR_1g021230 56.731 104 45 0 7 110 57 160 1.21e-36 135
MS.gene55277.t1 MTR_5g078800 51.786 112 54 0 1 112 1 112 1.41e-36 131
MS.gene55277.t1 MTR_0247s0040 52.778 108 51 0 1 108 1 108 1.87e-36 128
MS.gene55277.t1 MTR_5g079220 52.336 107 51 0 6 112 20 126 3.19e-36 130
MS.gene55277.t1 MTR_5g079290 49.107 112 57 0 1 112 11 122 3.69e-36 130
MS.gene55277.t1 MTR_7g017260 36.916 214 100 6 1 208 19 203 4.60e-36 130
MS.gene55277.t1 MTR_3g045430 47.899 119 62 0 7 125 13 131 5.76e-36 130
MS.gene55277.t1 MTR_6g006030 55.238 105 47 0 7 111 14 118 5.95e-36 128
MS.gene55277.t1 MTR_4g128670 57.000 100 42 1 7 105 12 111 7.97e-36 131
MS.gene55277.t1 MTR_0197s0010 55.000 100 45 0 12 111 6 105 1.29e-35 128
MS.gene55277.t1 MTR_5g078910 49.107 112 57 0 1 112 1 112 8.28e-35 127
MS.gene55277.t1 MTR_7g109320 59.813 107 43 0 5 111 10 116 1.19e-34 128
MS.gene55277.t1 MTR_2g088170 56.757 111 47 1 6 116 28 137 1.50e-34 130
MS.gene55277.t1 MTR_5g078950 50.926 108 53 0 1 108 1 108 1.67e-34 126
MS.gene55277.t1 MTR_1g086530 45.378 119 65 0 4 122 30 148 1.95e-34 126
MS.gene55277.t1 MTR_3g101290 60.396 101 39 1 10 110 38 137 1.99e-34 124
MS.gene55277.t1 MTR_5g016510 53.509 114 52 1 10 123 6 118 2.43e-34 127
MS.gene55277.t1 MTR_4g019370 58.252 103 42 1 10 112 39 140 2.54e-34 127
MS.gene55277.t1 MTR_4g094982 59.406 101 40 1 10 110 6 105 3.77e-34 125
MS.gene55277.t1 MTR_0001s0360 48.214 112 58 0 1 112 1 112 7.46e-34 124
MS.gene55277.t1 MTR_8g060940 50.467 107 53 0 1 107 1 107 1.30e-33 123
MS.gene55277.t1 MTR_5g062790 50.000 118 57 2 2 118 4 120 1.60e-33 124
MS.gene55277.t1 MTR_5g007300 66.667 78 26 0 6 83 63 140 1.77e-33 119
MS.gene55277.t1 MTR_5g088080 50.893 112 53 2 8 118 13 123 2.21e-33 123
MS.gene55277.t1 MTR_5g088150 50.893 112 53 2 8 118 13 123 2.21e-33 123
MS.gene55277.t1 MTR_5g488210 50.893 112 53 2 8 118 13 123 2.21e-33 123
MS.gene55277.t1 MTR_4g063100 49.515 103 52 0 8 110 8 110 2.70e-33 122
MS.gene55277.t1 MTR_5g088640 50.893 112 53 2 8 118 13 123 3.19e-33 123
MS.gene55277.t1 MTR_5g488170 50.893 112 53 2 8 118 13 123 4.46e-33 122
MS.gene55277.t1 MTR_2g033170 51.327 113 55 0 5 117 22 134 4.68e-33 124
MS.gene55277.t1 MTR_5g078930 46.825 126 61 1 12 137 14 133 7.58e-33 120
MS.gene55277.t1 MTR_2g096380 44.915 118 62 1 7 121 6 123 3.34e-32 119
MS.gene55277.t1 MTR_4g029540 42.038 157 84 4 7 162 10 160 6.45e-32 120
MS.gene55277.t1 MTR_8g006470 30.389 283 170 10 7 278 10 276 1.10e-31 119
MS.gene55277.t1 MTR_6g015455 52.778 108 50 1 10 117 6 112 4.38e-31 122
MS.gene55277.t1 MTR_4g123040 46.667 120 64 0 5 124 22 141 5.12e-31 118
MS.gene55277.t1 MTR_1g083630 48.696 115 58 1 2 116 7 120 7.76e-31 121
MS.gene55277.t1 MTR_5g088610 46.610 118 61 2 2 118 4 120 9.79e-29 112
MS.gene55277.t1 MTR_5g082910 53.061 98 45 1 10 107 20 116 4.12e-27 107
MS.gene55277.t1 MTR_7g061330 48.571 105 53 1 7 111 111 214 6.82e-27 110
MS.gene55277.t1 MTR_7g461410 48.571 105 53 1 7 111 111 214 6.82e-27 110
MS.gene55277.t1 MTR_7g061330 48.571 105 53 1 7 111 75 178 1.00e-26 109
MS.gene55277.t1 MTR_6g055910 62.162 74 28 0 40 113 18 91 1.53e-26 104
MS.gene55277.t1 MTR_5g070020 44.231 104 57 1 7 110 120 222 2.76e-25 103
MS.gene55277.t1 MTR_3g463400 42.056 107 61 1 4 110 128 233 2.85e-25 104
MS.gene55277.t1 MTR_3g110028 42.857 105 59 1 7 111 83 186 7.32e-25 104
MS.gene55277.t1 MTR_1g026870 44.762 105 57 1 7 111 83 186 8.16e-25 104
MS.gene55277.t1 MTR_4g063100 55.556 72 32 0 39 110 10 81 8.35e-25 99.4
MS.gene55277.t1 MTR_7g037260 32.338 201 121 5 3 198 139 329 9.74e-25 102
MS.gene55277.t1 MTR_6g027360 33.838 198 125 4 7 201 76 270 1.51e-24 100
MS.gene55277.t1 MTR_3g077650 43.243 111 60 2 1 110 173 281 2.34e-24 102
MS.gene55277.t1 MTR_4g082040 46.535 101 53 1 10 110 106 205 3.47e-24 101
MS.gene55277.t1 MTR_5g049190 48.936 94 47 1 10 103 20 112 4.13e-24 98.2
MS.gene55277.t1 MTR_6g027340 35.882 170 101 3 12 181 19 180 5.42e-24 96.7
MS.gene55277.t1 MTR_5g041570 48.421 95 48 1 10 104 135 228 5.56e-24 100
MS.gene55277.t1 MTR_7g451170 33.166 199 112 5 10 200 192 377 2.33e-23 99.0
MS.gene55277.t1 MTR_4g128190 46.491 114 47 3 6 118 10 110 3.16e-23 95.5
MS.gene55277.t1 MTR_6g074860 47.917 96 47 2 10 104 5 98 3.65e-23 95.5
MS.gene55277.t1 MTR_4g105660 46.154 104 49 2 10 110 181 280 3.80e-23 98.6
MS.gene55277.t1 MTR_3g089045 49.474 95 47 1 10 104 17 110 5.01e-23 96.3
MS.gene55277.t1 MTR_2g096380 44.792 96 50 1 39 131 19 114 9.69e-23 94.0
MS.gene55277.t1 MTR_6g027370 47.872 94 48 1 10 103 100 192 3.51e-22 95.1
MS.gene55277.t1 MTR_7g086960 45.545 101 54 1 10 110 90 189 4.02e-22 94.7
MS.gene55277.t1 MTR_7g035350 46.809 94 49 1 12 105 228 320 4.38e-22 95.5
MS.gene55277.t1 MTR_4g088015 35.000 140 81 3 10 149 222 351 6.79e-22 95.1
MS.gene55277.t1 MTR_0023s0210 48.193 83 43 0 1 83 1 83 9.20e-22 87.4
MS.gene55277.t1 MTR_7g037130 31.841 201 122 6 3 198 139 329 1.41e-21 93.2
MS.gene55277.t1 MTR_1g085880 47.619 105 53 2 7 109 11 115 3.06e-20 86.7
MS.gene55277.t1 MTR_5g010650 44.086 93 51 1 12 104 113 204 4.20e-20 90.1
MS.gene55277.t1 MTR_1g057980 43.434 99 55 1 7 105 78 175 1.06e-19 87.0
MS.gene55277.t1 MTR_1g085770 47.619 105 53 2 7 109 11 115 1.12e-19 87.4
MS.gene55277.t1 MTR_7g450950 40.625 96 56 1 10 105 158 252 3.04e-19 86.7
MS.gene55277.t1 MTR_7g061550 44.211 95 51 1 12 104 10 104 1.10e-17 82.4
MS.gene55277.t1 MTR_5g038910 34.454 119 77 1 12 130 29 146 9.53e-17 80.1
MS.gene55277.t1 MTR_5g038910 34.454 119 77 1 12 130 29 146 1.03e-16 80.1
MS.gene55277.t1 MTR_8g468380 34.343 99 64 1 12 110 25 122 1.27e-14 73.9
MS.gene55277.t1 MTR_1g008970 28.814 177 77 5 7 183 108 235 8.15e-13 67.4
MS.gene55277.t1 MTR_8g017480 60.976 41 16 0 7 47 12 52 2.10e-11 58.5
MS.gene55277.t1 MTR_6g055910 55.102 49 22 0 65 113 2 50 2.47e-11 62.4
MS.gene55277.t1 MTR_7g115550 34.483 87 56 1 7 93 5 90 2.74e-11 64.3
MS.gene55277.t1 MTR_7g115550 34.483 87 56 1 7 93 5 90 3.40e-11 63.9
MS.gene55277.t1 MTR_6g080360 32.353 102 68 1 7 107 424 525 6.51e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55277.t1 AT5G15310 44.484 281 133 5 5 266 10 286 2.10e-73 228
MS.gene55277.t1 AT5G15310 64.706 153 48 1 5 151 10 162 5.57e-72 224
MS.gene55277.t1 AT5G15310 64.706 153 48 1 5 151 10 162 6.35e-72 222
MS.gene55277.t1 AT3G01140 65.132 152 47 1 6 151 11 162 2.07e-71 224
MS.gene55277.t1 AT3G01140 65.132 152 47 1 6 151 54 205 7.26e-71 224
MS.gene55277.t1 AT3G61250 56.863 153 62 1 5 153 10 162 1.90e-62 199
MS.gene55277.t1 AT3G02940 66.935 124 41 0 6 129 11 134 9.15e-61 195
MS.gene55277.t1 AT4G05100 69.748 119 36 0 6 124 12 130 1.01e-60 196
MS.gene55277.t1 AT3G02940 66.935 124 41 0 6 129 11 134 1.78e-60 195
MS.gene55277.t1 AT3G02940 66.935 124 41 0 6 129 11 134 1.78e-60 195
MS.gene55277.t1 AT4G21440 68.908 119 37 0 6 124 11 129 1.17e-59 194
MS.gene55277.t1 AT4G28110 68.908 119 37 0 6 124 11 129 7.44e-59 189
MS.gene55277.t1 AT5G10280 66.116 121 41 0 6 126 11 131 1.88e-58 190
MS.gene55277.t1 AT5G65230 65.079 126 44 0 2 127 7 132 3.82e-58 189
MS.gene55277.t1 AT5G16770 64.516 124 44 0 6 129 11 134 3.96e-58 189
MS.gene55277.t1 AT5G16770 64.516 124 44 0 6 129 11 134 3.96e-58 189
MS.gene55277.t1 AT5G16770 64.516 124 44 0 6 129 11 134 7.68e-58 189
MS.gene55277.t1 AT5G16770 64.516 124 44 0 6 129 11 134 7.68e-58 189
MS.gene55277.t1 AT5G54230 67.500 120 39 0 7 126 12 131 9.24e-58 188
MS.gene55277.t1 AT1G57560 63.846 130 47 0 7 136 12 141 1.80e-57 186
MS.gene55277.t1 AT1G34670 48.223 197 90 2 6 202 11 195 1.91e-57 188
MS.gene55277.t1 AT4G17785 64.754 122 43 0 6 127 12 133 1.12e-56 186
MS.gene55277.t1 AT4G17785 64.754 122 43 0 6 127 12 133 1.58e-56 186
MS.gene55277.t1 AT1G57560 68.908 119 37 0 7 125 12 130 2.60e-56 184
MS.gene55277.t1 AT5G61420 64.516 124 44 0 6 129 11 134 3.38e-56 185
MS.gene55277.t1 AT5G60890 67.797 118 38 0 6 123 11 128 5.53e-56 182
MS.gene55277.t1 AT1G74080 67.500 120 39 0 3 122 8 127 5.79e-56 184
MS.gene55277.t1 AT1G18570 63.492 126 46 0 5 130 11 136 9.92e-56 184
MS.gene55277.t1 AT5G07690 63.492 126 46 0 6 131 11 136 1.22e-55 183
MS.gene55277.t1 AT5G07700 64.228 123 44 0 6 128 11 133 5.82e-55 181
MS.gene55277.t1 AT5G07700 64.228 123 44 0 6 128 11 133 5.82e-55 181
MS.gene55277.t1 AT5G26660 68.376 117 37 0 7 123 12 128 4.83e-54 179
MS.gene55277.t1 AT4G22680 65.546 119 41 0 5 123 10 128 1.30e-53 176
MS.gene55277.t1 AT1G74430 59.350 123 50 0 6 128 11 133 1.78e-53 175
MS.gene55277.t1 AT4G38620 65.789 114 39 0 10 123 15 128 2.30e-53 175
MS.gene55277.t1 AT1G09540 66.387 119 40 0 7 125 12 130 2.45e-53 178
MS.gene55277.t1 AT4G34990 66.667 114 38 0 10 123 15 128 3.14e-53 175
MS.gene55277.t1 AT4G12350 64.706 119 42 0 5 123 10 128 3.99e-53 175
MS.gene55277.t1 AT4G01680 66.379 116 39 0 7 122 12 127 1.42e-52 172
MS.gene55277.t1 AT1G18710 61.864 118 45 0 6 123 11 128 4.81e-52 171
MS.gene55277.t1 AT5G16600 64.463 121 43 0 5 125 10 130 7.41e-52 173
MS.gene55277.t1 AT5G56110 60.833 120 47 0 7 126 12 131 7.99e-52 172
MS.gene55277.t1 AT4G01680 66.379 116 39 0 7 122 12 127 8.57e-52 173
MS.gene55277.t1 AT3G23250 60.317 126 46 1 5 130 10 131 8.95e-52 171
MS.gene55277.t1 AT3G13540 57.258 124 53 0 5 128 21 144 1.55e-51 169
MS.gene55277.t1 AT2G16720 62.931 116 43 0 7 122 12 127 2.30e-51 170
MS.gene55277.t1 AT3G12720 62.609 115 43 0 7 121 22 136 1.12e-50 169
MS.gene55277.t1 AT4G09460 63.717 113 41 0 10 122 15 127 1.35e-50 167
MS.gene55277.t1 AT1G66230 55.970 134 59 0 5 138 10 143 3.01e-50 167
MS.gene55277.t1 AT1G06180 60.769 130 42 1 5 134 10 130 6.21e-50 165
MS.gene55277.t1 AT1G22640 61.207 116 45 0 7 122 12 127 7.78e-50 166
MS.gene55277.t1 AT1G35515 54.478 134 57 1 7 136 12 145 7.72e-49 161
MS.gene55277.t1 AT2G31180 66.355 107 36 0 5 111 10 116 1.11e-48 162
MS.gene55277.t1 AT4G01680 60.156 128 39 1 7 122 12 139 2.61e-48 164
MS.gene55277.t1 AT1G56160 67.619 105 34 0 7 111 14 118 2.89e-48 162
MS.gene55277.t1 AT1G79180 66.355 107 36 0 7 113 14 120 3.66e-48 162
MS.gene55277.t1 AT1G16490 67.619 105 34 0 7 111 14 118 1.14e-47 160
MS.gene55277.t1 AT5G62470 49.324 148 71 2 5 149 10 156 1.61e-47 162
MS.gene55277.t1 AT5G62320 56.800 125 47 1 5 122 11 135 9.02e-47 157
MS.gene55277.t1 AT5G14340 56.303 119 52 0 5 123 22 140 5.43e-46 156
MS.gene55277.t1 AT3G47600 58.182 110 46 0 5 114 10 119 7.36e-46 157
MS.gene55277.t1 AT5G35550 50.625 160 72 2 7 163 14 169 1.62e-45 154
MS.gene55277.t1 AT1G63910 58.974 117 48 0 7 123 12 128 2.73e-45 157
MS.gene55277.t1 AT5G62470 48.649 148 71 3 5 149 10 155 6.20e-45 155
MS.gene55277.t1 AT1G74650 58.182 110 46 0 5 114 10 119 7.66e-45 155
MS.gene55277.t1 AT1G08810 59.813 107 43 0 5 111 10 116 8.42e-45 153
MS.gene55277.t1 AT3G13890 63.208 106 39 0 7 112 12 117 2.41e-44 154
MS.gene55277.t1 AT3G12820 61.682 107 41 0 7 113 14 120 6.37e-44 150
MS.gene55277.t1 AT3G28910 55.357 112 50 0 6 117 11 122 1.90e-43 151
MS.gene55277.t1 AT5G12870 62.037 108 41 0 7 114 18 125 3.04e-43 149
MS.gene55277.t1 AT3G28470 57.143 119 51 0 7 125 12 130 2.18e-42 148
MS.gene55277.t1 AT1G79180 50.714 140 36 1 7 113 14 153 1.77e-41 146
MS.gene55277.t1 AT3G13890 58.261 115 39 1 7 112 12 126 2.38e-41 146
MS.gene55277.t1 AT5G49330 56.034 116 46 1 1 111 1 116 2.41e-41 146
MS.gene55277.t1 AT5G23000 59.813 107 42 1 7 112 12 118 5.76e-41 144
MS.gene55277.t1 AT3G62610 57.944 107 45 0 5 111 10 116 1.19e-40 144
MS.gene55277.t1 AT3G08500 61.905 105 40 0 7 111 30 134 2.65e-40 143
MS.gene55277.t1 AT2G36890 56.034 116 50 1 7 121 12 127 3.71e-40 142
MS.gene55277.t1 AT5G65790 58.879 107 43 1 7 112 12 118 6.63e-40 143
MS.gene55277.t1 AT5G57620 57.944 107 44 1 7 112 12 118 8.20e-40 142
MS.gene55277.t1 AT2G36890 56.034 116 50 1 7 121 53 168 9.06e-40 142
MS.gene55277.t1 AT5G14750 54.808 104 47 0 8 111 17 120 9.32e-40 138
MS.gene55277.t1 AT4G26930 34.058 276 148 7 7 263 19 279 1.20e-39 142
MS.gene55277.t1 AT3G49690 57.944 107 44 1 7 112 12 118 1.50e-39 140
MS.gene55277.t1 AT5G40350 55.963 109 48 0 7 115 17 125 1.77e-39 137
MS.gene55277.t1 AT4G37780 54.128 109 49 1 5 112 10 118 2.04e-39 140
MS.gene55277.t1 AT5G26660 72.093 86 24 0 38 123 12 97 4.62e-39 139
MS.gene55277.t1 AT5G40330 53.846 104 48 0 8 111 13 116 6.09e-39 136
MS.gene55277.t1 AT2G47460 56.075 107 47 0 5 111 10 116 7.11e-39 140
MS.gene55277.t1 AT2G26960 57.944 107 44 1 10 116 23 128 9.39e-39 141
MS.gene55277.t1 AT5G55020 57.273 110 46 1 7 116 26 134 9.51e-39 142
MS.gene55277.t1 AT4G25560 55.660 106 47 0 8 113 11 116 1.27e-38 137
MS.gene55277.t1 AT5G52260 59.434 106 43 0 8 113 13 118 3.76e-38 135
MS.gene55277.t1 AT5G06100 55.856 111 48 1 6 116 31 140 6.48e-38 139
MS.gene55277.t1 AT2G32460 52.991 117 54 1 6 122 17 132 1.51e-37 139
MS.gene55277.t1 AT2G32460 52.991 117 54 1 6 122 5 120 1.53e-37 139
MS.gene55277.t1 AT3G48920 54.902 102 46 0 8 109 19 120 1.78e-37 134
MS.gene55277.t1 AT5G06100 57.143 105 45 0 6 110 31 135 2.00e-37 139
MS.gene55277.t1 AT5G06100 57.143 105 45 0 6 110 31 135 2.00e-37 139
MS.gene55277.t1 AT5G06100 57.143 105 45 0 6 110 31 135 2.00e-37 139
MS.gene55277.t1 AT5G06100 57.143 105 45 0 6 110 31 135 2.00e-37 139
MS.gene55277.t1 AT3G53200 56.731 104 45 0 7 110 9 112 2.03e-37 133
MS.gene55277.t1 AT3G27920 51.429 105 51 0 8 112 15 119 2.36e-37 132
MS.gene55277.t1 AT3G30210 56.731 104 45 0 6 109 26 129 3.62e-37 133
MS.gene55277.t1 AT3G24310 56.190 105 46 0 6 110 17 121 4.62e-37 133
MS.gene55277.t1 AT3G27810 51.754 114 55 0 7 120 20 133 5.59e-37 131
MS.gene55277.t1 AT3G11440 55.769 104 46 0 7 110 41 144 5.83e-37 137
MS.gene55277.t1 AT4G13480 51.220 123 50 1 8 130 7 119 7.64e-37 132
MS.gene55277.t1 AT3G01530 54.286 105 48 0 7 111 25 129 8.34e-37 130
MS.gene55277.t1 AT1G48000 53.333 105 49 0 5 109 30 134 8.43e-37 131
MS.gene55277.t1 AT3G11440 55.769 104 46 0 7 110 41 144 1.66e-36 137
MS.gene55277.t1 AT3G11440 55.769 104 46 0 7 110 41 144 1.66e-36 137
MS.gene55277.t1 AT3G11440 55.769 104 46 0 7 110 41 144 1.66e-36 137
MS.gene55277.t1 AT5G52600 55.769 104 46 0 7 110 12 115 1.74e-36 129
MS.gene55277.t1 AT1G25340 47.826 115 60 0 8 122 19 133 4.81e-36 130
MS.gene55277.t1 AT2G47190 48.649 111 57 0 7 117 20 130 6.59e-36 130
MS.gene55277.t1 AT1G68320 47.414 116 61 0 7 122 19 134 1.13e-34 127
MS.gene55277.t1 AT5G35550 51.969 127 54 2 40 163 50 172 4.81e-34 124
MS.gene55277.t1 AT3G06490 48.387 124 64 0 1 124 13 136 1.03e-33 125
MS.gene55277.t1 AT1G66370 50.476 105 52 0 6 110 7 111 2.66e-33 122
MS.gene55277.t1 AT2G23290 58.416 101 41 1 10 110 14 113 8.23e-33 122
MS.gene55277.t1 AT4G37260 58.416 101 41 1 10 110 14 113 9.75e-33 122
MS.gene55277.t1 AT5G49620 45.968 124 67 0 1 124 20 143 2.63e-32 121
MS.gene55277.t1 AT3G60460 50.459 109 52 2 7 114 11 118 7.18e-32 120
MS.gene55277.t1 AT3G46130 47.273 110 58 0 1 110 3 112 7.45e-32 119
MS.gene55277.t1 AT2G39880 57.426 101 42 1 10 110 51 150 8.95e-32 121
MS.gene55277.t1 AT5G59780 48.544 103 53 0 8 110 9 111 9.41e-32 118
MS.gene55277.t1 AT5G67300 54.455 101 45 1 10 110 7 106 1.65e-31 119
MS.gene55277.t1 AT1G66380 53.333 105 49 0 6 110 7 111 2.49e-31 114
MS.gene55277.t1 AT1G25340 45.217 115 58 1 8 122 19 128 3.70e-31 117
MS.gene55277.t1 AT2G26950 50.476 105 51 1 12 116 21 124 4.24e-31 119
MS.gene55277.t1 AT1G25340 45.217 115 58 1 8 122 19 128 7.39e-31 117
MS.gene55277.t1 AT3G09230 55.340 103 45 1 10 112 56 157 1.06e-30 119
MS.gene55277.t1 AT3G50060 51.961 102 48 1 9 110 6 106 1.64e-30 116
MS.gene55277.t1 AT1G56650 45.802 131 63 1 6 128 7 137 3.72e-30 114
MS.gene55277.t1 AT3G47600 64.000 75 27 0 40 114 39 113 1.52e-29 114
MS.gene55277.t1 AT3G12820 69.014 71 22 0 43 113 2 72 1.66e-29 110
MS.gene55277.t1 AT1G66390 51.429 105 51 0 6 110 7 111 1.89e-29 112
MS.gene55277.t1 AT3G55730 56.436 101 43 1 10 110 57 156 2.79e-29 115
MS.gene55277.t1 AT5G49620 41.304 138 67 1 1 124 20 157 9.61e-29 112
MS.gene55277.t1 AT5G40350 61.842 76 29 0 40 115 5 80 1.06e-28 108
MS.gene55277.t1 AT5G14750 59.740 77 28 1 35 111 13 86 1.07e-28 108
MS.gene55277.t1 AT3G53200 65.753 73 25 0 38 110 7 79 2.78e-28 108
MS.gene55277.t1 AT1G22640 65.714 70 24 0 53 122 1 70 6.95e-28 107
MS.gene55277.t1 AT5G58850 43.750 128 66 2 7 134 103 224 1.77e-27 110
MS.gene55277.t1 AT1G71030 54.217 83 38 0 46 128 5 87 2.04e-27 105
MS.gene55277.t1 AT1G71030 54.217 83 38 0 46 128 19 101 3.13e-27 105
MS.gene55277.t1 AT3G27810 55.556 81 36 0 40 120 4 84 1.12e-26 103
MS.gene55277.t1 AT5G11050 46.535 101 53 1 10 110 106 205 1.06e-25 105
MS.gene55277.t1 AT5G02320 45.714 105 56 1 7 111 125 228 1.47e-25 106
MS.gene55277.t1 AT5G02320 45.714 105 56 1 7 111 125 228 1.47e-25 106
MS.gene55277.t1 AT5G02320 45.714 105 56 1 7 111 65 168 1.53e-25 105
MS.gene55277.t1 AT4G32730 45.714 105 56 1 7 111 85 188 2.73e-25 105
MS.gene55277.t1 AT4G32730 45.714 105 56 1 7 111 85 188 2.73e-25 105
MS.gene55277.t1 AT4G32730 45.714 105 56 1 7 111 85 188 2.73e-25 105
MS.gene55277.t1 AT4G32730 45.714 105 56 1 7 111 85 188 2.73e-25 105
MS.gene55277.t1 AT4G32730 45.714 105 56 1 7 111 85 188 3.38e-25 105
MS.gene55277.t1 AT5G40360 46.078 102 53 2 10 111 159 258 3.84e-25 103
MS.gene55277.t1 AT1G18960 41.379 116 65 2 11 126 12 124 4.75e-25 102
MS.gene55277.t1 AT3G09370 46.296 108 49 2 7 110 133 235 5.17e-25 104
MS.gene55277.t1 AT3G09370 46.296 108 49 2 7 110 141 243 5.57e-25 104
MS.gene55277.t1 AT3G09370 46.296 108 49 2 7 110 128 230 6.30e-25 104
MS.gene55277.t1 AT1G69560 43.636 110 61 1 2 111 100 208 7.56e-25 102
MS.gene55277.t1 AT1G69560 43.636 110 61 1 2 111 116 224 8.69e-25 102
MS.gene55277.t1 AT5G59780 56.164 73 32 0 38 110 18 90 8.88e-25 99.4
MS.gene55277.t1 AT4G18770 44.762 105 57 1 7 111 215 318 9.29e-25 103
MS.gene55277.t1 AT1G17950 45.545 101 54 1 10 110 6 105 1.22e-24 99.8
MS.gene55277.t1 AT3G46130 56.164 73 32 0 38 110 18 90 1.85e-24 99.0
MS.gene55277.t1 AT1G26780 47.115 104 54 1 7 110 96 198 2.61e-24 99.4
MS.gene55277.t1 AT5G15310 33.816 207 114 5 79 266 5 207 2.66e-24 99.0
MS.gene55277.t1 AT1G26780 47.115 104 54 1 7 110 96 198 3.71e-24 100
MS.gene55277.t1 AT3G27785 41.071 112 65 1 2 113 182 292 3.94e-24 101
MS.gene55277.t1 AT3G46130 55.556 72 32 0 39 110 9 80 4.82e-24 97.4
MS.gene55277.t1 AT5G17800 47.525 101 52 1 10 110 94 193 2.35e-23 97.8
MS.gene55277.t1 AT5G11510 40.000 105 62 1 7 111 79 182 3.03e-23 100
MS.gene55277.t1 AT5G11510 40.000 105 62 1 7 111 79 182 3.03e-23 100
MS.gene55277.t1 AT5G11510 40.000 105 62 1 7 111 79 182 3.03e-23 100
MS.gene55277.t1 AT5G11510 40.000 105 62 1 7 111 79 182 3.97e-23 99.4
MS.gene55277.t1 AT5G11510 40.000 105 62 1 7 111 79 182 4.09e-23 99.4
MS.gene55277.t1 AT3G23250 58.974 78 28 1 53 130 1 74 9.02e-23 94.4
MS.gene55277.t1 AT1G73410 46.535 101 53 1 10 110 7 106 9.95e-23 94.4
MS.gene55277.t1 AT1G73410 46.535 101 53 1 10 110 7 106 1.32e-22 93.2
MS.gene55277.t1 AT4G33450 41.748 103 59 1 8 110 18 119 2.13e-22 93.6
MS.gene55277.t1 AT3G29020 43.689 103 55 2 10 111 66 166 1.41e-21 91.3
MS.gene55277.t1 AT5G39700 43.396 106 58 2 8 113 55 158 2.99e-21 89.4
MS.gene55277.t1 AT3G29020 43.689 103 55 2 10 111 68 168 4.45e-21 91.3
MS.gene55277.t1 AT1G66380 59.722 72 29 0 39 110 7 78 6.16e-21 85.9
MS.gene55277.t1 AT1G66380 51.220 82 40 0 6 87 7 88 1.18e-20 85.1
MS.gene55277.t1 AT5G14750 55.932 59 26 0 53 111 1 59 6.84e-19 81.6
MS.gene55277.t1 AT5G14750 55.932 59 26 0 53 111 1 59 6.84e-19 81.6
MS.gene55277.t1 AT4G00540 41.667 108 59 2 7 111 101 207 1.01e-18 85.9
MS.gene55277.t1 AT2G25230 43.000 100 55 2 12 111 29 126 1.10e-18 83.2
MS.gene55277.t1 AT4G00540 41.667 108 59 2 7 111 99 205 1.85e-18 85.1
MS.gene55277.t1 AT2G02820 40.404 99 58 1 12 110 33 130 2.85e-18 84.0
MS.gene55277.t1 AT5G61420 66.667 54 18 0 76 129 2 55 3.40e-18 82.8
MS.gene55277.t1 AT2G02820 40.404 99 58 1 12 110 33 130 4.65e-18 84.0
MS.gene55277.t1 AT2G02820 40.404 99 58 1 12 110 33 130 6.14e-18 84.0
MS.gene55277.t1 AT2G37630 45.263 95 50 1 12 104 7 101 9.19e-18 82.8
MS.gene55277.t1 AT1G14350 40.404 99 58 1 12 110 28 125 9.47e-18 83.2
MS.gene55277.t1 AT1G14350 40.404 99 58 1 12 110 28 125 9.47e-18 83.2
MS.gene55277.t1 AT4G28110 71.429 42 12 0 83 124 4 45 1.23e-15 74.3
MS.gene55277.t1 AT5G40430 37.000 100 60 3 12 111 57 153 1.75e-14 72.0
MS.gene55277.t1 AT3G18100 38.542 96 58 1 8 103 545 639 3.89e-14 72.8
MS.gene55277.t1 AT3G18100 38.542 96 58 1 8 103 497 591 4.27e-14 72.8
MS.gene55277.t1 AT3G18100 38.542 96 58 1 8 103 332 426 5.78e-14 72.4
MS.gene55277.t1 AT3G18100 38.542 96 58 1 8 103 384 478 5.92e-14 72.4
MS.gene55277.t1 AT4G25560 58.333 48 20 0 66 113 3 50 7.56e-13 66.6
MS.gene55277.t1 AT1G74430 49.123 57 29 0 72 128 8 64 2.07e-12 65.1
MS.gene55277.t1 AT1G74650 61.905 42 16 0 73 114 2 43 4.02e-12 65.5
MS.gene55277.t1 AT1G09770 35.632 87 55 1 7 93 5 90 1.10e-11 65.5
MS.gene55277.t1 AT3G28910 55.556 45 20 0 73 117 2 46 3.62e-11 62.4
MS.gene55277.t1 AT5G14340 60.976 41 16 0 83 123 10 50 3.96e-11 61.2
MS.gene55277.t1 AT1G14350 45.000 60 33 0 51 110 23 82 5.07e-11 63.2
MS.gene55277.t1 AT1G14350 45.000 60 33 0 51 110 23 82 5.07e-11 63.2

Find 56 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCTTCTTGTCTTCTTT+TGG 0.163262 5.2:-31597802 None:intergenic
TTGTTGTTGTTGTTAGATTT+TGG 0.239668 5.2:-31599221 None:intergenic
CTTCAATGGTGACACTTTCA+TGG 0.293424 5.2:+31599640 MS.gene55277:CDS
CTTACCAATGAATTGAAGTT+TGG 0.297168 5.2:+31599485 MS.gene55277:CDS
TTCTCCAAACTTCAATTCAT+TGG 0.311193 5.2:-31599489 None:intergenic
TTCATGGACTTCAATGGAAA+TGG 0.348493 5.2:+31599656 MS.gene55277:CDS
TGCTGTAATGTTACCTGCTC+TGG 0.350524 5.2:-31597872 None:intergenic
CTCAACATGGCCATAGAAAC+TGG 0.356479 5.2:+31597836 MS.gene55277:CDS
GCAAAGAATGCCAGTTTCTA+TGG 0.366432 5.2:-31597846 None:intergenic
CATTATCTGTTCTCCTTGGC+AGG 0.386660 5.2:-31599124 None:intergenic
GTAAGACAAGGAAGCTCATT+AGG 0.387716 5.2:-31599467 None:intergenic
ATTCAGCTTCATGCACTTCT+CGG 0.394016 5.2:+31598071 MS.gene55277:CDS
CATGAAAGTGTCACCATTGA+AGG 0.398904 5.2:-31599639 None:intergenic
GAAGCAAGATCATCAATGTT+AGG 0.403364 5.2:+31599299 MS.gene55277:CDS
AAGAAAAGACTTATCAGAAT+GGG 0.406171 5.2:+31599176 MS.gene55277:CDS
ATACATTGCATTGTTGTGTT+TGG 0.412941 5.2:-31599378 None:intergenic
TTGAAGTTTGGAGAAGGCTT+AGG 0.428185 5.2:+31599497 MS.gene55277:CDS
GCATTTGGAGATTCCTTCAA+TGG 0.432077 5.2:+31599626 MS.gene55277:CDS
GACACTTTCATGGACTTCAA+TGG 0.435257 5.2:+31599650 MS.gene55277:CDS
TATCAAACACGTGGCTCAAT+GGG 0.439734 5.2:+31599256 MS.gene55277:CDS
ATAATGAAATAAAGAATCAT+TGG 0.440805 5.2:+31599141 MS.gene55277:CDS
TTCAGCTTCATGCACTTCTC+GGG 0.444052 5.2:+31598072 MS.gene55277:CDS
ATTTCATTATCTGTTCTCCT+TGG 0.449445 5.2:-31599128 None:intergenic
CTATCAAACACGTGGCTCAA+TGG 0.449972 5.2:+31599255 MS.gene55277:CDS
ATGGTGGCATTGGATGCATT+TGG 0.456791 5.2:+31599611 MS.gene55277:CDS
TTGAAAATGAGTAGGGCTCT+AGG 0.461511 5.2:+31597757 None:intergenic
CATTCTTTGCCCTCCAGAGC+AGG 0.475255 5.2:+31597859 MS.gene55277:CDS
ATCATTATTTGCAAGCATGA+TGG 0.476845 5.2:-31599411 None:intergenic
GCAAGGTGATGATGATCTAA+TGG 0.487418 5.2:+31599592 MS.gene55277:CDS
CAAGAAAAGACTTATCAGAA+TGG 0.489082 5.2:+31599175 MS.gene55277:CDS
TGGCAGGAGAGCTGCTATTG+TGG 0.496430 5.2:-31599108 None:intergenic
TTGTGATTTGAAAATGAGTA+GGG 0.505830 5.2:+31597750 None:intergenic
TATATAGGTCTTAGAAGATG+TGG 0.511267 5.2:+31597963 MS.gene55277:intron
TGTTAGTAATAATAATATCA+TGG 0.514632 5.2:+31599532 MS.gene55277:CDS
TGATGATCTAATGGTGGCAT+TGG 0.519218 5.2:+31599601 MS.gene55277:CDS
TGAAAATGAGTAGGGCTCTA+GGG 0.531154 5.2:+31597758 None:intergenic
TTTGTGATTTGAAAATGAGT+AGG 0.538258 5.2:+31597749 None:intergenic
AATGAATTGAAGTTTGGAGA+AGG 0.539551 5.2:+31599491 MS.gene55277:CDS
AGGGCTCTAGGGTTGAAGAA+TGG 0.562324 5.2:+31597769 MS.gene55277:CDS
CAATAGCAGCTCTCCTGCCA+AGG 0.575828 5.2:+31599111 MS.gene55277:CDS
TTCAATTCATTGGTAAGACA+AGG 0.599973 5.2:-31599479 None:intergenic
TGTAATGTTACCTGCTCTGG+AGG 0.601213 5.2:-31597869 None:intergenic
GAACTTGATGAAGATAGTAA+AGG 0.608417 5.2:-31599338 None:intergenic
GTTTATGTGTCAAAATTGCA+AGG 0.632220 5.2:+31599575 MS.gene55277:CDS
GAAAGAGTTGCAGACTGAGG+TGG 0.635300 5.2:+31597985 MS.gene55277:CDS
AGAAAAGACTTATCAGAATG+GGG 0.641194 5.2:+31599177 MS.gene55277:CDS
CTCATTAGGACAGCTCAATG+TGG 0.660198 5.2:-31599453 None:intergenic
ATAGCATATGTTACTCAACA+TGG 0.670094 5.2:+31597823 MS.gene55277:CDS
ACGAGGAAACTTCAGCTCAG+AGG 0.673756 5.2:+31598034 MS.gene55277:CDS
CAATGTCGCTATCAAACACG+TGG 0.677580 5.2:+31599247 MS.gene55277:CDS
GTAATGTTACCTGCTCTGGA+GGG 0.677991 5.2:-31597868 None:intergenic
CTGAATCCTGATATAAAACG+AGG 0.681945 5.2:+31598017 MS.gene55277:CDS
AAAATCTAACAACAACAACA+AGG 0.689545 5.2:+31599223 MS.gene55277:CDS
TAGGGTTGAAGAATGGACCA+TGG 0.701525 5.2:+31597776 MS.gene55277:CDS
AGGTGATGATGATCTAATGG+TGG 0.729997 5.2:+31599595 MS.gene55277:CDS
GTGGAAAGAGTTGCAGACTG+AGG 0.736692 5.2:+31597982 MS.gene55277:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTAGAAAGAAAAAAA+TGG - chr5.2:31598763-31598782 None:intergenic 10.0%
!! ATAATGAAATAAAGAATCAT+TGG + chr5.2:31599141-31599160 MS.gene55277:CDS 15.0%
!! TGTTAGTAATAATAATATCA+TGG + chr5.2:31599532-31599551 MS.gene55277:CDS 15.0%
!!! TTTTGAAAAAGCAAAATAAT+GGG + chr5.2:31598347-31598366 MS.gene55277:intron 15.0%
!!! TTTTTGAAAAAGCAAAATAA+TGG + chr5.2:31598346-31598365 MS.gene55277:intron 15.0%
!! ATATATAAACTCAAGATTAC+TGG - chr5.2:31597948-31597967 None:intergenic 20.0%
!! ATATTACTCATAATTGAAGA+TGG - chr5.2:31597920-31597939 None:intergenic 20.0%
!! ATCAACTTTCTTTGATATTT+AGG + chr5.2:31598664-31598683 MS.gene55277:intron 20.0%
!! GTAATCTTGAGTTTATATAT+AGG + chr5.2:31597948-31597967 MS.gene55277:intron 20.0%
!! TGTATATTAACCTATTTACA+TGG + chr5.2:31598149-31598168 MS.gene55277:intron 20.0%
!!! AGTCAAGTCTTAATATTTTT+TGG - chr5.2:31598985-31599004 None:intergenic 20.0%
!!! CTTTTTTCATATTCTCTATT+TGG + chr5.2:31598119-31598138 MS.gene55277:intron 20.0%
!!! TTTTCTCTTATACTTAAGAT+CGG - chr5.2:31598607-31598626 None:intergenic 20.0%
! AAAATCTAACAACAACAACA+AGG + chr5.2:31599223-31599242 MS.gene55277:CDS 25.0%
! AAGAAAAGACTTATCAGAAT+GGG + chr5.2:31599176-31599195 MS.gene55277:CDS 25.0%
! ACTTACAAGCAAATTAAAGT+AGG + chr5.2:31598699-31598718 MS.gene55277:intron 25.0%
! AGAGAAAATTGAGTCAAAAA+AGG + chr5.2:31598619-31598638 MS.gene55277:intron 25.0%
! CTTACAAGCAAATTAAAGTA+GGG + chr5.2:31598700-31598719 MS.gene55277:intron 25.0%
! TCAGTCAAAAAAGAAGAATA+AGG + chr5.2:31598417-31598436 MS.gene55277:intron 25.0%
! TTAAATGTAACTGCATCTAT+TGG + chr5.2:31598532-31598551 MS.gene55277:intron 25.0%
! TTGATAAAGAGTAATGTTCA+TGG + chr5.2:31599056-31599075 MS.gene55277:intron 25.0%
!! TGACTGATAACTTTGTATTT+TGG - chr5.2:31598404-31598423 None:intergenic 25.0%
!!! CAAGTCTTAATATTTTTTGG+TGG - chr5.2:31598982-31599001 None:intergenic 25.0%
!!! TCTCAAAGTTTTAGAGTTTT+TGG - chr5.2:31598248-31598267 None:intergenic 25.0%
!!! TGATAACTTTGTATTTTGGT+TGG - chr5.2:31598400-31598419 None:intergenic 25.0%
!!! TTGTTGTTGTTGTTAGATTT+TGG - chr5.2:31599224-31599243 None:intergenic 25.0%
AATGAATTGAAGTTTGGAGA+AGG + chr5.2:31599491-31599510 MS.gene55277:CDS 30.0%
AGAAAAGACTTATCAGAATG+GGG + chr5.2:31599177-31599196 MS.gene55277:CDS 30.0%
ATACATTGCATTGTTGTGTT+TGG - chr5.2:31599381-31599400 None:intergenic 30.0%
ATAGCATATGTTACTCAACA+TGG + chr5.2:31597823-31597842 MS.gene55277:CDS 30.0%
ATCATTATTTGCAAGCATGA+TGG - chr5.2:31599414-31599433 None:intergenic 30.0%
ATTATTATCTGTGTTGTGTC+CGG - chr5.2:31598495-31598514 None:intergenic 30.0%
ATTTCATTATCTGTTCTCCT+TGG - chr5.2:31599131-31599150 None:intergenic 30.0%
CAAGAAAAGACTTATCAGAA+TGG + chr5.2:31599175-31599194 MS.gene55277:CDS 30.0%
CTTACCAATGAATTGAAGTT+TGG + chr5.2:31599485-31599504 MS.gene55277:CDS 30.0%
GAACATATAATGTCAGTATC+TGG - chr5.2:31598741-31598760 None:intergenic 30.0%
GAACTTGATGAAGATAGTAA+AGG - chr5.2:31599341-31599360 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr5.2:31598930-31598949 MS.gene55277:intron 30.0%
GTTTATGTGTCAAAATTGCA+AGG + chr5.2:31599575-31599594 MS.gene55277:CDS 30.0%
TATATAGGTCTTAGAAGATG+TGG + chr5.2:31597963-31597982 MS.gene55277:intron 30.0%
TCGTAACTTTGTATTTGTGT+TGG - chr5.2:31598447-31598466 None:intergenic 30.0%
TGATACAATGATACTAACAC+CGG + chr5.2:31598473-31598492 MS.gene55277:intron 30.0%
TTCAATTCATTGGTAAGACA+AGG - chr5.2:31599482-31599501 None:intergenic 30.0%
TTCTCCAAACTTCAATTCAT+TGG - chr5.2:31599492-31599511 None:intergenic 30.0%
! AAGTTTCCTCGTTTTATATC+AGG - chr5.2:31598026-31598045 None:intergenic 30.0%
! ATAAGCTTCTTGTCTTCTTT+TGG - chr5.2:31597805-31597824 None:intergenic 30.0%
! GAACAAGTGAGATATTCTTT+TGG + chr5.2:31598094-31598113 MS.gene55277:intron 30.0%
! TAAGCTTCTTGTCTTCTTTT+GGG - chr5.2:31597804-31597823 None:intergenic 30.0%
!! TCAAAGAAAGTTGATGCATT+TGG - chr5.2:31598659-31598678 None:intergenic 30.0%
!!! GTCTTAATATTTTTTGGTGG+TGG - chr5.2:31598979-31598998 None:intergenic 30.0%
AACAATATGCACTTCACAGA+TGG + chr5.2:31599084-31599103 MS.gene55277:intron 35.0%
AGTGCAGTTTCCATGTAAAT+AGG - chr5.2:31598162-31598181 None:intergenic 35.0%
CAAGCAAATTAAAGTAGGGA+AGG + chr5.2:31598704-31598723 MS.gene55277:intron 35.0%
CTGAATCCTGATATAAAACG+AGG + chr5.2:31598017-31598036 MS.gene55277:CDS 35.0%
GAAGCAAGATCATCAATGTT+AGG + chr5.2:31599299-31599318 MS.gene55277:CDS 35.0%
TGCATAATATATGCAAGGTC+CGG + chr5.2:31598935-31598954 MS.gene55277:intron 35.0%
TTATGTGACCTTGTCTCATT+GGG - chr5.2:31598299-31598318 None:intergenic 35.0%
TTCATGGACTTCAATGGAAA+TGG + chr5.2:31599656-31599675 MS.gene55277:CDS 35.0%
! AAGCTTCTTGTCTTCTTTTG+GGG - chr5.2:31597803-31597822 None:intergenic 35.0%
! CTCGTTTTATATCAGGATTC+AGG - chr5.2:31598019-31598038 None:intergenic 35.0%
!! GTACAATTTTGATGCTAGCT+TGG + chr5.2:31599682-31599701 MS.gene55277:CDS 35.0%
!!! GTTAGATTTTGGTTTGTGAG+TGG - chr5.2:31599213-31599232 None:intergenic 35.0%
!!! TAATATTTTTTGGTGGTGGC+CGG - chr5.2:31598975-31598994 None:intergenic 35.0%
ATTCAGCTTCATGCACTTCT+CGG + chr5.2:31598071-31598090 MS.gene55277:CDS 40.0%
CATAATATATGCAAGGTCCG+GGG + chr5.2:31598937-31598956 MS.gene55277:intron 40.0%
CTTATGTGACCTTGTCTCAT+TGG - chr5.2:31598300-31598319 None:intergenic 40.0%
CTTCAATGGTGACACTTTCA+TGG + chr5.2:31599640-31599659 MS.gene55277:CDS 40.0%
GACACTTTCATGGACTTCAA+TGG + chr5.2:31599650-31599669 MS.gene55277:CDS 40.0%
GCAAAGAATGCCAGTTTCTA+TGG - chr5.2:31597849-31597868 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG + chr5.2:31598936-31598955 MS.gene55277:intron 40.0%
GCATTTGGAGATTCCTTCAA+TGG + chr5.2:31599626-31599645 MS.gene55277:CDS 40.0%
GTAAGACAAGGAAGCTCATT+AGG - chr5.2:31599470-31599489 None:intergenic 40.0%
TATCAAACACGTGGCTCAAT+GGG + chr5.2:31599256-31599275 MS.gene55277:CDS 40.0%
TGATGATCTAATGGTGGCAT+TGG + chr5.2:31599601-31599620 MS.gene55277:CDS 40.0%
TTGAAGTTTGGAGAAGGCTT+AGG + chr5.2:31599497-31599516 MS.gene55277:CDS 40.0%
! AGGTGATGATGATCTAATGG+TGG + chr5.2:31599595-31599614 MS.gene55277:CDS 40.0%
! GCAAGGTGATGATGATCTAA+TGG + chr5.2:31599592-31599611 MS.gene55277:CDS 40.0%
! TGAGTTCAGCTCAGTTGATA+TGG + chr5.2:31598908-31598927 MS.gene55277:intron 40.0%
!! CATGAAAGTGTCACCATTGA+AGG - chr5.2:31599642-31599661 None:intergenic 40.0%
!!! AATATTTTTTGGTGGTGGCC+GGG - chr5.2:31598974-31598993 None:intergenic 40.0%
!!! AGATTTTGGTTTGTGAGTGG+TGG - chr5.2:31599210-31599229 None:intergenic 40.0%
!!! GATTTTGGTTTGTGAGTGGT+GGG - chr5.2:31599209-31599228 None:intergenic 40.0%
ACCTTGTCTCATTGGGAGTA+GGG - chr5.2:31598292-31598311 None:intergenic 45.0%
CAATGTCGCTATCAAACACG+TGG + chr5.2:31599247-31599266 MS.gene55277:CDS 45.0%
CATTATCTGTTCTCCTTGGC+AGG - chr5.2:31599127-31599146 None:intergenic 45.0%
CTATCAAACACGTGGCTCAA+TGG + chr5.2:31599255-31599274 MS.gene55277:CDS 45.0%
CTCAACATGGCCATAGAAAC+TGG + chr5.2:31597836-31597855 MS.gene55277:CDS 45.0%
CTCATTAGGACAGCTCAATG+TGG - chr5.2:31599456-31599475 None:intergenic 45.0%
TAGGGTTGAAGAATGGACCA+TGG + chr5.2:31597776-31597795 MS.gene55277:CDS 45.0%
TCAACTGAGCTGAACTCACA+AGG - chr5.2:31598906-31598925 None:intergenic 45.0%
TGCTGTAATGTTACCTGCTC+TGG - chr5.2:31597875-31597894 None:intergenic 45.0%
TGTAATGTTACCTGCTCTGG+AGG - chr5.2:31597872-31597891 None:intergenic 45.0%
TTCAGCTTCATGCACTTCTC+GGG + chr5.2:31598072-31598091 MS.gene55277:CDS 45.0%
! ATGGTGGCATTGGATGCATT+TGG + chr5.2:31599611-31599630 MS.gene55277:CDS 45.0%
! GTAATGTTACCTGCTCTGGA+GGG - chr5.2:31597871-31597890 None:intergenic 45.0%
!! CATCTATTGGTTTGTGTCGC+AGG + chr5.2:31598545-31598564 MS.gene55277:intron 45.0%
!! TTGTCTTCTTTTGGGGACCA+TGG - chr5.2:31597796-31597815 None:intergenic 45.0%
!!! ATATTTTTTGGTGGTGGCCG+GGG - chr5.2:31598973-31598992 None:intergenic 45.0%
ACCCTACTCCCAATGAGACA+AGG + chr5.2:31598288-31598307 MS.gene55277:intron 50.0%
ACGAGGAAACTTCAGCTCAG+AGG + chr5.2:31598034-31598053 MS.gene55277:CDS 50.0%
GAAAGAGTTGCAGACTGAGG+TGG + chr5.2:31597985-31598004 MS.gene55277:CDS 50.0%
GACCTTGTCTCATTGGGAGT+AGG - chr5.2:31598293-31598312 None:intergenic 50.0%
GTGGAAAGAGTTGCAGACTG+AGG + chr5.2:31597982-31598001 MS.gene55277:CDS 50.0%
!! AGGGCTCTAGGGTTGAAGAA+TGG + chr5.2:31597769-31597788 MS.gene55277:CDS 50.0%
CAATAGCAGCTCTCCTGCCA+AGG + chr5.2:31599111-31599130 MS.gene55277:CDS 55.0%
CATTCTTTGCCCTCCAGAGC+AGG + chr5.2:31597859-31597878 MS.gene55277:CDS 55.0%
TGGCAGGAGAGCTGCTATTG+TGG - chr5.2:31599111-31599130 None:intergenic 55.0%
TCCGGGGTTCAAACCAACCC+CGG + chr5.2:31598953-31598972 MS.gene55277:intron 60.0%
!!! TTTTTGGTGGTGGCCGGGGT+TGG - chr5.2:31598969-31598988 None:intergenic 60.0%
!! GCCGGGGTTGGTTTGAACCC+CGG - chr5.2:31598957-31598976 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 31597763 31599718 31597763 ID=MS.gene55277
chr5.2 mRNA 31597763 31599718 31597763 ID=MS.gene55277.t1;Parent=MS.gene55277
chr5.2 exon 31597763 31597880 31597763 ID=MS.gene55277.t1.exon1;Parent=MS.gene55277.t1
chr5.2 CDS 31597763 31597880 31597763 ID=cds.MS.gene55277.t1;Parent=MS.gene55277.t1
chr5.2 exon 31597970 31598099 31597970 ID=MS.gene55277.t1.exon2;Parent=MS.gene55277.t1
chr5.2 CDS 31597970 31598099 31597970 ID=cds.MS.gene55277.t1;Parent=MS.gene55277.t1
chr5.2 exon 31599103 31599718 31599103 ID=MS.gene55277.t1.exon3;Parent=MS.gene55277.t1
chr5.2 CDS 31599103 31599718 31599103 ID=cds.MS.gene55277.t1;Parent=MS.gene55277.t1
Gene Sequence

>MS.gene55277

ATGAGTAGGGCTCTAGGGTTGAAGAATGGACCATGGTCCCCAAAAGAAGACAAGAAGCTTATAGCATATGTTACTCAACATGGCCATAGAAACTGGCATTCTTTGCCCTCCAGAGCAGGTAACATTACAGCATAGCTTGCTATATATAAAATATCCATCTTCAATTATGAGTAATATATTAACCAGTAATCTTGAGTTTATATATAGGTCTTAGAAGATGTGGAAAGAGTTGCAGACTGAGGTGGATTAACTACCTGAATCCTGATATAAAACGAGGAAACTTCAGCTCAGAGGAAGATCACACTATTATTCAGCTTCATGCACTTCTCGGGAACAAGTGAGATATTCTTTTGGATCTTTTTTCATATTCTCTATTTGGAAATCTTTGTATATTAACCTATTTACATGGAAACTGCACTTGTTTTATTTTGTTTCTATGAAGTTATAACAAGAGAGACATAATTTTGAAGCATAGTGATTTACCAAAAACTCTAAAACTTTGAGAGAAAACAAACGATAAAAGAAACCCTACTCCCAATGAGACAAGGTCACATAAGATATTGTATCACATGTTTTATTTTTTTTTTTGAAAAAGCAAAATAATGGGTTATTAAGAAGAAAAAACAAGAGAATTCCAACCAAAATACAAAGTTATCAGTCAAAAAAGAAGAATAAGGTATTCCAACACAAATACAAAGTTACGAAGAACTTGATACAATGATACTAACACCGGACACAACACAGATAATAATGTGAGAAAGTTGAATAATTAAATGTAACTGCATCTATTGGTTTGTGTCGCAGGTTAGCTTTACATTAGAAGTCTATGTGCTATATTTCTCCGATCTTAAGTATAAGAGAAAATTGAGTCAAAAAAGGTTAATGAATTAGATCCAAATGCATCAACTTTCTTTGATATTTAGGATCAGAGATAGCACTTACAAGCAAATTAAAGTAGGGAAGGAAAATCAGAAACCAGATACTGACATTATATGTTCCATTTTTTTCTTTCTAATTTTATGTCATCTATAAAATCACATACAAGAAGTAAAGAATATTATTATTCACTATTCATATATTAGAACACTTGAATGACATGTTACGTTATTATTCACTATTCTTATATTAAGACTTGACTGTCCTTGTGAGTTCAGCTCAGTTGATATGGACAATGCATAATATATGCAAGGTCCGGGGTTCAAACCAACCCCGGCCACCACCAAAAAATATTAAGACTTGACTAAGAGAAAACAGAATAGTGATTTTTGTCTAGTACTTGTTGAGATTTAATTTTTGATAAAGAGTAATGTTCATGGATGTGAACAATATGCACTTCACAGATGGTCCACAATAGCAGCTCTCCTGCCAAGGAGAACAGATAATGAAATAAAGAATCATTGGAACAGTAACATCAAGAAAAGACTTATCAGAATGGGGATAGATCCCACCACTCACAAACCAAAATCTAACAACAACAACAAGGACAATGTCGCTATCAAACACGTGGCTCAATGGGAGAATGTTAGATTAGAAGCTGAAGCAAGATCATCAATGTTAGGAAAAACTCAAACTCAACCTTTACTATCTTCATCAAGTTCATCAAAGTTATCACTAACCAAACACAACAATGCAATGTATAACTTGTGTGCCATCATGCTTGCAAATAATGATGACTCTTTTTCTTCAACATCCACATTGAGCTGTCCTAATGAGCTTCCTTGTCTTACCAATGAATTGAAGTTTGGAGAAGGCTTAGGATCATATGAGAGTGTTAGTAATAATAATATCATGGAAACTATTGCTCAAGATGATGTTTATGTGTCAAAATTGCAAGGTGATGATGATCTAATGGTGGCATTGGATGCATTTGGAGATTCCTTCAATGGTGACACTTTCATGGACTTCAATGGAAATGGAATGTACAATTTTGATGCTAGCTTGGCATTTTTTGAGTAA
Protein sequence

>MS.gene55277.t1

MSRALGLKNGPWSPKEDKKLIAYVTQHGHRNWHSLPSRAGLRRCGKSCRLRWINYLNPDIKRGNFSSEEDHTIIQLHALLGNKWSTIAALLPRRTDNEIKNHWNSNIKKRLIRMGIDPTTHKPKSNNNNKDNVAIKHVAQWENVRLEAEARSSMLGKTQTQPLLSSSSSSKLSLTKHNNAMYNLCAIMLANNDDSFSSTSTLSCPNELPCLTNELKFGEGLGSYESVSNNNIMETIAQDDVYVSKLQGDDDLMVALDAFGDSFNGDTFMDFNGNGMYNFDASLAFFE