Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55392.t1 | XP_003614031.1 | 85.1 | 525 | 54 | 6 | 1 | 512 | 1 | 514 | 2.40E-195 | 691.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55392.t1 | G7JWR4 | 85.1 | 525 | 54 | 6 | 1 | 512 | 1 | 514 | 1.7e-195 | 691.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene55392.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55392.t1 | MTR_5g043930 | 89.333 | 525 | 32 | 6 | 1 | 512 | 1 | 514 | 0.0 | 832 |
| MS.gene55392.t1 | MTR_4g082980 | 39.777 | 538 | 210 | 15 | 1 | 512 | 1 | 450 | 7.74e-69 | 228 |
| MS.gene55392.t1 | MTR_4g109340 | 32.784 | 546 | 260 | 26 | 6 | 512 | 13 | 490 | 1.35e-53 | 189 |
| MS.gene55392.t1 | MTR_3g023760 | 34.234 | 222 | 104 | 6 | 5 | 213 | 13 | 205 | 1.65e-19 | 91.7 |
| MS.gene55392.t1 | MTR_0160s0030 | 40.541 | 74 | 28 | 1 | 439 | 512 | 284 | 341 | 1.51e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55392.t1 | AT1G26610 | 42.045 | 528 | 204 | 20 | 5 | 512 | 10 | 455 | 7.18e-91 | 285 |
| MS.gene55392.t1 | AT1G26590 | 33.474 | 475 | 157 | 21 | 5 | 465 | 10 | 339 | 1.54e-35 | 136 |
| MS.gene55392.t1 | AT1G26590 | 33.474 | 475 | 157 | 21 | 5 | 465 | 10 | 339 | 1.54e-35 | 136 |
| MS.gene55392.t1 | AT1G26590 | 33.474 | 475 | 157 | 21 | 5 | 465 | 10 | 339 | 1.54e-35 | 136 |
| MS.gene55392.t1 | AT1G26590 | 33.474 | 475 | 157 | 21 | 5 | 465 | 28 | 357 | 2.51e-35 | 136 |
Find 84 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGAAAGAGATTGGATTT+AGG | 0.149234 | 5.2:-34035582 | MS.gene55392:CDS |
| TTGAAAATCTTGTTACAAAT+TGG | 0.152666 | 5.2:+34034424 | None:intergenic |
| CATCATTTCCTCCAATAAAA+TGG | 0.153454 | 5.2:+34034368 | None:intergenic |
| AGAGAAAGAGATTGGATTTA+GGG | 0.199212 | 5.2:-34035581 | MS.gene55392:CDS |
| GATGATGGTAACCTTATTTA+TGG | 0.208436 | 5.2:-34035543 | MS.gene55392:CDS |
| GTTTCTGATAATTCTGATTC+TGG | 0.223352 | 5.2:-34034907 | MS.gene55392:CDS |
| GTCTAGAGATTCTACTTATA+AGG | 0.238762 | 5.2:-34035124 | MS.gene55392:CDS |
| AAGATGAAATCGGTCGAAAT+TGG | 0.290349 | 5.2:-34034934 | MS.gene55392:CDS |
| GCAGCAACAGCAGGAGGTGC+AGG | 0.291343 | 5.2:+34034298 | None:intergenic |
| TTCAAGTCAGGACAAGCTTT+AGG | 0.299867 | 5.2:-34034406 | MS.gene55392:CDS |
| GTCTTCGTCTTCGCTTCATT+GGG | 0.309421 | 5.2:-34035217 | MS.gene55392:CDS |
| TCAAGTCAGGACAAGCTTTA+GGG | 0.329356 | 5.2:-34034405 | MS.gene55392:CDS |
| GCAGCATGAGCAGCACCAGC+TGG | 0.341131 | 5.2:+34034325 | None:intergenic |
| TCTCTCTAAGACCATAAATA+AGG | 0.341554 | 5.2:+34035532 | None:intergenic |
| GCAGCAGCAGCAACAGCAGG+AGG | 0.346468 | 5.2:+34034292 | None:intergenic |
| AGTCTTCGTCTTCGCTTCAT+TGG | 0.357875 | 5.2:-34035218 | MS.gene55392:CDS |
| AATCTCTTGGTGGTCACATT+AGG | 0.382747 | 5.2:-34035704 | MS.gene55392:CDS |
| TGTCCGTGAAAAGCAGAAAT+TGG | 0.395743 | 5.2:-34035337 | MS.gene55392:CDS |
| CTGCTCCTGATGATGAATAA+AGG | 0.396449 | 5.2:-34034234 | None:intergenic |
| GATTCTGGATACTTCACATA+TGG | 0.400793 | 5.2:-34034892 | MS.gene55392:CDS |
| TGAAAAGCAGAAATTGGTTA+TGG | 0.401153 | 5.2:-34035331 | MS.gene55392:CDS |
| CAAAACCTTTATTCATCATC+AGG | 0.407763 | 5.2:+34034229 | None:intergenic |
| CCTTGTGGAAAATCTCTTGG+TGG | 0.417387 | 5.2:-34035714 | MS.gene55392:CDS |
| GGGAAGAAAGAGAAAGAGAT+TGG | 0.418968 | 5.2:-34035589 | MS.gene55392:CDS |
| GATGCTAAGTCTTCAAAAGT+TGG | 0.435991 | 5.2:-34034820 | MS.gene55392:CDS |
| GAATTGTTCTTCTTCGGTAT+CGG | 0.436053 | 5.2:-34035193 | MS.gene55392:CDS |
| TTCTGTAAAGAATGTGGAAA+AGG | 0.436561 | 5.2:-34035447 | MS.gene55392:CDS |
| AACTTGCTTTGGATGATTCA+AGG | 0.439067 | 5.2:-34034711 | MS.gene55392:CDS |
| ATCATTTCCTCCAATAAAAT+GGG | 0.439536 | 5.2:+34034369 | None:intergenic |
| GATTTAGGGTCTAGTGGTAA+TGG | 0.442325 | 5.2:-34035567 | MS.gene55392:CDS |
| TTTCCTTGTGGAAAATCTCT+TGG | 0.449803 | 5.2:-34035717 | MS.gene55392:CDS |
| CTCCAAAGGCACAAAACAAT+AGG | 0.450695 | 5.2:-34034531 | MS.gene55392:CDS |
| TCTAGAGATTCTACTTATAA+GGG | 0.461296 | 5.2:-34035123 | MS.gene55392:CDS |
| TTCGGTATCGGAGGTTGAGC+AGG | 0.462264 | 5.2:-34035181 | MS.gene55392:CDS |
| TCAGTCTGATACCGAGGCTT+CGG | 0.472830 | 5.2:-34035304 | MS.gene55392:CDS |
| CTGAACAGTAGCAGCAGCAT+TGG | 0.476419 | 5.2:+34035479 | None:intergenic |
| CCACACAGTGCTTTCAATGA+TGG | 0.493227 | 5.2:+34035420 | None:intergenic |
| ATCGGAGGTTGAGCAGGAGC+AGG | 0.493921 | 5.2:-34035175 | MS.gene55392:CDS |
| CTTTGGATGATTCAAGGAAG+AGG | 0.496626 | 5.2:-34034705 | MS.gene55392:CDS |
| CTTCGGTTCAGACTGATTCA+AGG | 0.498154 | 5.2:-34035287 | MS.gene55392:CDS |
| CAAAACAATAGGAACATGAA+TGG | 0.501886 | 5.2:-34034520 | MS.gene55392:CDS |
| ACGATTCATAACAGCAAACT+TGG | 0.505648 | 5.2:+34035026 | None:intergenic |
| GCTATGTTTAAGTTTGATGA+GGG | 0.506285 | 5.2:-34035609 | MS.gene55392:CDS |
| GAGAAATTCTGTAAAGAATG+TGG | 0.506498 | 5.2:-34035453 | MS.gene55392:CDS |
| CTTTATTCATCATCAGGAGC+AGG | 0.509902 | 5.2:+34034235 | None:intergenic |
| TGTCACTCTGAGAAAGATAA+GGG | 0.513515 | 5.2:-34035387 | MS.gene55392:CDS |
| TTGTCACTCTGAGAAAGATA+AGG | 0.514322 | 5.2:-34035388 | MS.gene55392:CDS |
| TGCTGCTGCTACTGTTCAGA+TGG | 0.519726 | 5.2:-34035475 | MS.gene55392:CDS |
| CAAAGACGGGAAGATGAAAT+CGG | 0.522844 | 5.2:-34034944 | MS.gene55392:CDS |
| AGATTAAGATCAAATAAAGA+TGG | 0.528073 | 5.2:+34034259 | None:intergenic |
| AGACTGATTCAAGGAGATCA+AGG | 0.531367 | 5.2:-34035278 | MS.gene55392:CDS |
| AGTTCAAGAATCTTAGCGGC+GGG | 0.534441 | 5.2:-34035248 | MS.gene55392:CDS |
| CTTCGTCTTCGCTTCATTGG+GGG | 0.536060 | 5.2:-34035215 | MS.gene55392:CDS |
| TCTAGTGGTAATGGTGATGA+TGG | 0.536602 | 5.2:-34035558 | MS.gene55392:CDS |
| AATCGGATTGAAAGTGTGTC+TGG | 0.538516 | 5.2:-34035360 | MS.gene55392:CDS |
| GAATCAGATGATTCAAGTGA+TGG | 0.538994 | 5.2:-34034856 | MS.gene55392:CDS |
| TGCTATGTTTAAGTTTGATG+AGG | 0.542036 | 5.2:-34035610 | MS.gene55392:CDS |
| AGAAGAAGTTGAACAAAGAC+GGG | 0.553022 | 5.2:-34034957 | MS.gene55392:CDS |
| AATCGTGGTAAGAACATTGT+TGG | 0.559092 | 5.2:-34035009 | MS.gene55392:CDS |
| ATCAGTCTGAACCGAAGCCT+CGG | 0.559850 | 5.2:+34035293 | None:intergenic |
| GAGAAGAAGTTGAACAAAGA+CGG | 0.560154 | 5.2:-34034958 | MS.gene55392:CDS |
| AGGAGCAGGAAGATGTTGCT+AGG | 0.560537 | 5.2:-34035161 | MS.gene55392:CDS |
| AGACACACTTTCAATCCGAT+TGG | 0.563334 | 5.2:+34035362 | None:intergenic |
| TCTTCGTCTTCGCTTCATTG+GGG | 0.566211 | 5.2:-34035216 | MS.gene55392:CDS |
| TTGTTCTTCTTCGGTATCGG+AGG | 0.567935 | 5.2:-34035190 | MS.gene55392:CDS |
| AATAAGAAGTCAAGTTGCAA+AGG | 0.569912 | 5.2:-34034490 | MS.gene55392:CDS |
| ACTCTTGTGATTAGACCAGC+TGG | 0.571253 | 5.2:-34034340 | MS.gene55392:CDS |
| AAGTTTGCTGTTATGAATCG+TGG | 0.576490 | 5.2:-34035024 | MS.gene55392:CDS |
| AGATTGGATTTAGGGTCTAG+TGG | 0.582545 | 5.2:-34035573 | MS.gene55392:CDS |
| TGATTCTTATCCTGCTCCAA+AGG | 0.589382 | 5.2:-34034545 | MS.gene55392:CDS |
| ATGAAGTTCAAGAATCTTAG+CGG | 0.594742 | 5.2:-34035252 | MS.gene55392:CDS |
| GAAAGCACTGTGTGGTCACA+TGG | 0.599338 | 5.2:-34035412 | MS.gene55392:CDS |
| AGAAAGATAAGGGAGCCAAT+CGG | 0.599365 | 5.2:-34035377 | MS.gene55392:CDS |
| CAAGTCAGGACAAGCTTTAG+GGG | 0.607651 | 5.2:-34034404 | MS.gene55392:CDS |
| TCAGAAGACTCTGTCACCAA+AGG | 0.619365 | 5.2:+34035093 | None:intergenic |
| GCAAACTTGGTATCAACAGA+AGG | 0.623895 | 5.2:+34035039 | None:intergenic |
| GGATAGTCAGTCTGATACCG+AGG | 0.628900 | 5.2:-34035310 | MS.gene55392:CDS |
| AAGTCAGGACAAGCTTTAGG+GGG | 0.631959 | 5.2:-34034403 | MS.gene55392:CDS |
| AGAATCCCAAGAAAACAACT+AGG | 0.636642 | 5.2:-34035512 | MS.gene55392:CDS |
| TCAAGCAAGATAATAAGCAG+AGG | 0.648910 | 5.2:-34034763 | MS.gene55392:CDS |
| AAGTTCAAGAATCTTAGCGG+CGG | 0.653501 | 5.2:-34035249 | MS.gene55392:CDS |
| CCATCATTGAAAGCACTGTG+TGG | 0.660357 | 5.2:-34035420 | MS.gene55392:CDS |
| GTTCAAGAATCTTAGCGGCG+GGG | 0.682533 | 5.2:-34035247 | MS.gene55392:CDS |
| TGTTTGAAAAGGTTTCCTTG+TGG | 0.689303 | 5.2:-34035729 | MS.gene55392:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTAAGATCAAATAAAGA+TGG | + | chr5.2:34035734-34035753 | None:intergenic | 20.0% |
| !! | TTGAAAATCTTGTTACAAAT+TGG | + | chr5.2:34035569-34035588 | None:intergenic | 20.0% |
| !!! | TTTGTAAGTTTTGTTTGAAA+AGG | - | chr5.2:34034250-34034269 | MS.gene55392:CDS | 20.0% |
| ! | ATCATTTCCTCCAATAAAAT+GGG | + | chr5.2:34035624-34035643 | None:intergenic | 25.0% |
| ! | TCTAGAGATTCTACTTATAA+GGG | - | chr5.2:34034867-34034886 | MS.gene55392:CDS | 25.0% |
| !! | TGAATTCAAAAAACTTGCTT+TGG | - | chr5.2:34035268-34035287 | MS.gene55392:CDS | 25.0% |
| !!! | TCATCTGATTCTACTTTTTT+AGG | + | chr5.2:34035125-34035144 | None:intergenic | 25.0% |
| !!! | TTTTCTAGTTTTGAGAATCA+TGG | - | chr5.2:34035197-34035216 | MS.gene55392:CDS | 25.0% |
| AAGAGAAAGAGATTGGATTT+AGG | - | chr5.2:34034408-34034427 | MS.gene55392:CDS | 30.0% | |
| AGAGAAAGAGATTGGATTTA+GGG | - | chr5.2:34034409-34034428 | MS.gene55392:CDS | 30.0% | |
| ATGAAGTTCAAGAATCTTAG+CGG | - | chr5.2:34034738-34034757 | MS.gene55392:CDS | 30.0% | |
| CAAAACAATAGGAACATGAA+TGG | - | chr5.2:34035470-34035489 | MS.gene55392:CDS | 30.0% | |
| CATCATTTCCTCCAATAAAA+TGG | + | chr5.2:34035625-34035644 | None:intergenic | 30.0% | |
| GAGAAATTCTGTAAAGAATG+TGG | - | chr5.2:34034537-34034556 | MS.gene55392:CDS | 30.0% | |
| GTCTAGAGATTCTACTTATA+AGG | - | chr5.2:34034866-34034885 | MS.gene55392:CDS | 30.0% | |
| GTTTCTGATAATTCTGATTC+TGG | - | chr5.2:34035083-34035102 | MS.gene55392:CDS | 30.0% | |
| TGAAAAGCAGAAATTGGTTA+TGG | - | chr5.2:34034659-34034678 | MS.gene55392:CDS | 30.0% | |
| TTCTGTAAAGAATGTGGAAA+AGG | - | chr5.2:34034543-34034562 | MS.gene55392:CDS | 30.0% | |
| ! | AATAAGAAGTCAAGTTGCAA+AGG | - | chr5.2:34035500-34035519 | MS.gene55392:CDS | 30.0% |
| ! | GATGATGGTAACCTTATTTA+TGG | - | chr5.2:34034447-34034466 | MS.gene55392:CDS | 30.0% |
| ! | GCTATGTTTAAGTTTGATGA+GGG | - | chr5.2:34034381-34034400 | MS.gene55392:CDS | 30.0% |
| ! | TGCTATGTTTAAGTTTGATG+AGG | - | chr5.2:34034380-34034399 | MS.gene55392:CDS | 30.0% |
| !! | ACAAACCTAGTTGTTTTCTT+GGG | + | chr5.2:34034486-34034505 | None:intergenic | 30.0% |
| !! | ATTGTTGGTGCTAAAAACAA+TGG | - | chr5.2:34034996-34035015 | MS.gene55392:CDS | 30.0% |
| !! | TAACCAATTTCTGCTTTTCA+CGG | + | chr5.2:34034659-34034678 | None:intergenic | 30.0% |
| !! | TCTCTCTAAGACCATAAATA+AGG | + | chr5.2:34034461-34034480 | None:intergenic | 30.0% |
| !!! | AAAAACAATGGTTTTGAGCT+TGG | - | chr5.2:34035008-34035027 | MS.gene55392:CDS | 30.0% |
| !!! | ATTCAAGTGATGGTTTTTTC+AGG | - | chr5.2:34035144-34035163 | MS.gene55392:CDS | 30.0% |
| !!! | TGTAACAAGATTTTCAAGTC+AGG | - | chr5.2:34035572-34035591 | MS.gene55392:CDS | 30.0% |
| AAGATGAAATCGGTCGAAAT+TGG | - | chr5.2:34035056-34035075 | MS.gene55392:CDS | 35.0% | |
| AATCGTGGTAAGAACATTGT+TGG | - | chr5.2:34034981-34035000 | MS.gene55392:CDS | 35.0% | |
| ACGATTCATAACAGCAAACT+TGG | + | chr5.2:34034967-34034986 | None:intergenic | 35.0% | |
| AGAAGAAGTTGAACAAAGAC+GGG | - | chr5.2:34035033-34035052 | MS.gene55392:CDS | 35.0% | |
| AGAATCCCAAGAAAACAACT+AGG | - | chr5.2:34034478-34034497 | MS.gene55392:CDS | 35.0% | |
| GAATCAGATGATTCAAGTGA+TGG | - | chr5.2:34035134-34035153 | MS.gene55392:CDS | 35.0% | |
| GAATTGTTCTTCTTCGGTAT+CGG | - | chr5.2:34034797-34034816 | MS.gene55392:CDS | 35.0% | |
| GAGAAGAAGTTGAACAAAGA+CGG | - | chr5.2:34035032-34035051 | MS.gene55392:CDS | 35.0% | |
| GATGCTAAGTCTTCAAAAGT+TGG | - | chr5.2:34035170-34035189 | MS.gene55392:CDS | 35.0% | |
| GATTCTGGATACTTCACATA+TGG | - | chr5.2:34035098-34035117 | MS.gene55392:CDS | 35.0% | |
| TCAAGCAAGATAATAAGCAG+AGG | - | chr5.2:34035227-34035246 | MS.gene55392:CDS | 35.0% | |
| TGTTTGAAAAGGTTTCCTTG+TGG | - | chr5.2:34034261-34034280 | MS.gene55392:CDS | 35.0% | |
| TTTCCTTGTGGAAAATCTCT+TGG | - | chr5.2:34034273-34034292 | MS.gene55392:CDS | 35.0% | |
| ! | AAAAGGTCCCATTTTATTGG+AGG | - | chr5.2:34035614-34035633 | MS.gene55392:CDS | 35.0% |
| ! | AACTTGCTTTGGATGATTCA+AGG | - | chr5.2:34035279-34035298 | MS.gene55392:CDS | 35.0% |
| ! | CACAAAAGGTCCCATTTTAT+TGG | - | chr5.2:34035611-34035630 | MS.gene55392:CDS | 35.0% |
| ! | TGTCACTCTGAGAAAGATAA+GGG | - | chr5.2:34034603-34034622 | MS.gene55392:CDS | 35.0% |
| ! | TTGTCACTCTGAGAAAGATA+AGG | - | chr5.2:34034602-34034621 | MS.gene55392:CDS | 35.0% |
| !! | AAGTTTGCTGTTATGAATCG+TGG | - | chr5.2:34034966-34034985 | MS.gene55392:CDS | 35.0% |
| !! | CACAAACCTAGTTGTTTTCT+TGG | + | chr5.2:34034487-34034506 | None:intergenic | 35.0% |
| !! | TTATAAGGGTCGTTTTCCTT+TGG | - | chr5.2:34034881-34034900 | MS.gene55392:CDS | 35.0% |
| !! | TTCCTATTGTTTTGTGCCTT+TGG | + | chr5.2:34035464-34035483 | None:intergenic | 35.0% |
| AAGTTCAAGAATCTTAGCGG+CGG | - | chr5.2:34034741-34034760 | MS.gene55392:CDS | 40.0% | |
| AGAAAGATAAGGGAGCCAAT+CGG | - | chr5.2:34034613-34034632 | MS.gene55392:CDS | 40.0% | |
| AGACACACTTTCAATCCGAT+TGG | + | chr5.2:34034631-34034650 | None:intergenic | 40.0% | |
| CAAAGACGGGAAGATGAAAT+CGG | - | chr5.2:34035046-34035065 | MS.gene55392:CDS | 40.0% | |
| CTTTGGATGATTCAAGGAAG+AGG | - | chr5.2:34035285-34035304 | MS.gene55392:CDS | 40.0% | |
| GCAAACTTGGTATCAACAGA+AGG | + | chr5.2:34034954-34034973 | None:intergenic | 40.0% | |
| GGGAAGAAAGAGAAAGAGAT+TGG | - | chr5.2:34034401-34034420 | MS.gene55392:CDS | 40.0% | |
| TCAAGTCAGGACAAGCTTTA+GGG | - | chr5.2:34035585-34035604 | MS.gene55392:CDS | 40.0% | |
| TGATTCTTATCCTGCTCCAA+AGG | - | chr5.2:34035445-34035464 | MS.gene55392:CDS | 40.0% | |
| TGTCCGTGAAAAGCAGAAAT+TGG | - | chr5.2:34034653-34034672 | MS.gene55392:CDS | 40.0% | |
| TTCAAGTCAGGACAAGCTTT+AGG | - | chr5.2:34035584-34035603 | MS.gene55392:CDS | 40.0% | |
| TTGGGGGAATTGTTCTTCTT+CGG | - | chr5.2:34034791-34034810 | MS.gene55392:CDS | 40.0% | |
| ! | AATCGGATTGAAAGTGTGTC+TGG | - | chr5.2:34034630-34034649 | MS.gene55392:CDS | 40.0% |
| ! | AATCTCTTGGTGGTCACATT+AGG | - | chr5.2:34034286-34034305 | MS.gene55392:CDS | 40.0% |
| ! | AGACTGATTCAAGGAGATCA+AGG | - | chr5.2:34034712-34034731 | MS.gene55392:CDS | 40.0% |
| ! | AGATTGGATTTAGGGTCTAG+TGG | - | chr5.2:34034417-34034436 | MS.gene55392:CDS | 40.0% |
| ! | CTCCAAAGGCACAAAACAAT+AGG | - | chr5.2:34035459-34035478 | MS.gene55392:CDS | 40.0% |
| ! | GATTTAGGGTCTAGTGGTAA+TGG | - | chr5.2:34034423-34034442 | MS.gene55392:CDS | 40.0% |
| !! | TCTAGTGGTAATGGTGATGA+TGG | - | chr5.2:34034432-34034451 | MS.gene55392:CDS | 40.0% |
| ACTCTTGTGATTAGACCAGC+TGG | - | chr5.2:34035650-34035669 | MS.gene55392:CDS | 45.0% | |
| AGTCTTCGTCTTCGCTTCAT+TGG | - | chr5.2:34034772-34034791 | MS.gene55392:CDS | 45.0% | |
| AGTTCAAGAATCTTAGCGGC+GGG | - | chr5.2:34034742-34034761 | MS.gene55392:CDS | 45.0% | |
| CCACACAGTGCTTTCAATGA+TGG | + | chr5.2:34034573-34034592 | None:intergenic | 45.0% | |
| CCTTGTGGAAAATCTCTTGG+TGG | - | chr5.2:34034276-34034295 | MS.gene55392:CDS | 45.0% | |
| GTCTTCGTCTTCGCTTCATT+GGG | - | chr5.2:34034773-34034792 | MS.gene55392:CDS | 45.0% | |
| TCAGAAGACTCTGTCACCAA+AGG | + | chr5.2:34034900-34034919 | None:intergenic | 45.0% | |
| TCTTCGTCTTCGCTTCATTG+GGG | - | chr5.2:34034774-34034793 | MS.gene55392:CDS | 45.0% | |
| ! | CAAGTCAGGACAAGCTTTAG+GGG | - | chr5.2:34035586-34035605 | MS.gene55392:CDS | 45.0% |
| ! | CCACCAAGAGATTTTCCACA+AGG | + | chr5.2:34034279-34034298 | None:intergenic | 45.0% |
| ! | CTTCGGTTCAGACTGATTCA+AGG | - | chr5.2:34034703-34034722 | MS.gene55392:CDS | 45.0% |
| ! | TTGTTCTTCTTCGGTATCGG+AGG | - | chr5.2:34034800-34034819 | MS.gene55392:CDS | 45.0% |
| !! | AAGCTTTAGGGGGTCACAAA+AGG | - | chr5.2:34035597-34035616 | MS.gene55392:CDS | 45.0% |
| !! | AAGTCAGGACAAGCTTTAGG+GGG | - | chr5.2:34035587-34035606 | MS.gene55392:CDS | 45.0% |
| !! | CCATCATTGAAAGCACTGTG+TGG | - | chr5.2:34034570-34034589 | MS.gene55392:CDS | 45.0% |
| !!! | TTGTTTTGTGCCTTTGGAGC+AGG | + | chr5.2:34035458-34035477 | None:intergenic | 45.0% |
| AGGAGCAGGAAGATGTTGCT+AGG | - | chr5.2:34034829-34034848 | MS.gene55392:CDS | 50.0% | |
| ATCAGTCTGAACCGAAGCCT+CGG | + | chr5.2:34034700-34034719 | None:intergenic | 50.0% | |
| CTGAACAGTAGCAGCAGCAT+TGG | + | chr5.2:34034514-34034533 | None:intergenic | 50.0% | |
| CTTCGTCTTCGCTTCATTGG+GGG | - | chr5.2:34034775-34034794 | MS.gene55392:CDS | 50.0% | |
| GGATAGTCAGTCTGATACCG+AGG | - | chr5.2:34034680-34034699 | MS.gene55392:CDS | 50.0% | |
| GTTCAAGAATCTTAGCGGCG+GGG | - | chr5.2:34034743-34034762 | MS.gene55392:CDS | 50.0% | |
| TCAGTCTGATACCGAGGCTT+CGG | - | chr5.2:34034686-34034705 | MS.gene55392:CDS | 50.0% | |
| TGCTGCTGCTACTGTTCAGA+TGG | - | chr5.2:34034515-34034534 | MS.gene55392:CDS | 50.0% | |
| !! | GAAAGCACTGTGTGGTCACA+TGG | - | chr5.2:34034578-34034597 | MS.gene55392:CDS | 50.0% |
| ! | TTCGGTATCGGAGGTTGAGC+AGG | - | chr5.2:34034809-34034828 | MS.gene55392:CDS | 55.0% |
| ATCGGAGGTTGAGCAGGAGC+AGG | - | chr5.2:34034815-34034834 | MS.gene55392:CDS | 60.0% | |
| GCAGCAGCAGCAACAGCAGG+AGG | + | chr5.2:34035701-34035720 | None:intergenic | 65.0% | |
| GCAGCAGCAGCAGCAACAGC+AGG | + | chr5.2:34035704-34035723 | None:intergenic | 65.0% | |
| GCAGCATGAGCAGCACCAGC+TGG | + | chr5.2:34035668-34035687 | None:intergenic | 65.0% | |
| ! | GCAGCAACAGCAGGAGGTGC+AGG | + | chr5.2:34035695-34035714 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 34034237 | 34035775 | 34034237 | ID=MS.gene55392 |
| chr5.2 | mRNA | 34034237 | 34035775 | 34034237 | ID=MS.gene55392.t1;Parent=MS.gene55392 |
| chr5.2 | exon | 34034237 | 34035775 | 34034237 | ID=MS.gene55392.t1.exon1;Parent=MS.gene55392.t1 |
| chr5.2 | CDS | 34034237 | 34035775 | 34034237 | ID=cds.MS.gene55392.t1;Parent=MS.gene55392.t1 |
| Gene Sequence |
| Protein sequence |
