AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55601

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55601.t1 MTR_6g027360 86.545 275 36 1 15 288 34 308 1.59e-177 492
MS.gene55601.t1 MTR_6g027340 77.551 245 15 1 44 288 1 205 2.61e-134 379
MS.gene55601.t1 MTR_6g027370 62.300 313 77 8 16 288 36 347 3.28e-117 341
MS.gene55601.t1 MTR_7g086960 46.792 265 105 7 58 286 88 352 2.27e-56 185
MS.gene55601.t1 MTR_5g041570 50.340 147 70 2 34 180 111 254 5.94e-46 160
MS.gene55601.t1 MTR_6g074860 59.821 112 45 0 58 169 3 114 6.72e-46 155
MS.gene55601.t1 MTR_4g082040 60.177 113 45 0 58 170 104 216 6.86e-46 160
MS.gene55601.t1 MTR_3g089045 65.385 104 36 0 59 162 16 119 3.84e-45 154
MS.gene55601.t1 MTR_4g019370 53.465 101 47 0 59 159 38 138 1.89e-35 130
MS.gene55601.t1 MTR_5g082910 36.957 138 87 0 47 184 7 144 5.57e-31 117
MS.gene55601.t1 MTR_3g101290 46.535 101 54 0 59 159 37 137 5.07e-30 113
MS.gene55601.t1 MTR_3g463400 49.505 101 51 0 59 159 133 233 3.10e-29 115
MS.gene55601.t1 MTR_5g016510 38.400 125 77 0 59 183 5 129 8.16e-29 112
MS.gene55601.t1 MTR_5g049190 42.609 115 61 1 44 158 9 118 2.53e-27 106
MS.gene55601.t1 MTR_5g070020 48.515 101 52 0 59 159 122 222 2.64e-27 108
MS.gene55601.t1 MTR_4g094982 41.667 108 63 0 59 166 5 112 2.84e-27 107
MS.gene55601.t1 MTR_3g077650 47.525 101 53 0 59 159 181 281 1.10e-26 108
MS.gene55601.t1 MTR_6g015455 45.833 96 52 0 59 154 5 100 2.63e-26 108
MS.gene55601.t1 MTR_1g100667 47.222 108 54 2 55 159 9 116 3.24e-26 104
MS.gene55601.t1 MTR_4g105660 46.535 101 54 0 59 159 180 280 1.00e-25 105
MS.gene55601.t1 MTR_4g100720 42.188 128 62 2 58 184 14 130 1.16e-25 100
MS.gene55601.t1 MTR_7g061330 49.474 95 48 0 59 153 113 207 2.54e-25 105
MS.gene55601.t1 MTR_7g461410 49.474 95 48 0 59 153 113 207 2.54e-25 105
MS.gene55601.t1 MTR_7g061330 49.474 95 48 0 59 153 77 171 4.08e-25 104
MS.gene55601.t1 MTR_7g037260 44.660 103 56 1 59 161 145 246 4.31e-25 103
MS.gene55601.t1 MTR_7g451170 43.564 101 57 0 59 159 191 291 6.10e-25 103
MS.gene55601.t1 MTR_1g110460 44.340 106 58 1 59 163 28 133 8.42e-25 101
MS.gene55601.t1 MTR_3g110028 42.593 108 62 0 59 166 85 192 1.41e-24 103
MS.gene55601.t1 MTR_5g010020 45.918 98 52 1 56 152 11 108 1.66e-24 101
MS.gene55601.t1 MTR_1g026870 42.593 108 62 0 59 166 85 192 1.78e-24 103
MS.gene55601.t1 MTR_1g026870 34.906 106 64 2 53 153 23 128 3.66e-15 75.9
MS.gene55601.t1 MTR_2g097910 41.964 112 62 2 59 168 22 132 4.27e-24 99.8
MS.gene55601.t1 MTR_6g055910 46.000 100 53 1 55 153 12 111 5.13e-24 99.0
MS.gene55601.t1 MTR_8g098860 40.741 108 63 1 56 162 11 118 6.84e-24 99.0
MS.gene55601.t1 MTR_5g042030 45.714 105 55 2 59 161 9 113 1.00e-23 98.2
MS.gene55601.t1 MTR_4g065017 40.517 116 68 1 49 163 9 124 1.24e-23 98.6
MS.gene55601.t1 MTR_4g088015 43.000 100 57 0 59 158 221 320 1.33e-23 100
MS.gene55601.t1 MTR_2g089620 38.776 147 79 3 59 194 14 160 1.49e-23 98.2
MS.gene55601.t1 MTR_7g035350 33.533 167 93 3 53 201 219 385 1.66e-23 99.8
MS.gene55601.t1 MTR_2g064160 45.455 99 51 2 56 152 10 107 1.84e-23 97.8
MS.gene55601.t1 MTR_7g035075 45.361 97 52 1 59 154 16 112 1.96e-23 95.5
MS.gene55601.t1 MTR_3g052450 42.991 107 60 1 59 164 42 148 2.05e-23 100
MS.gene55601.t1 MTR_2g089450 46.939 98 49 2 59 154 14 110 2.19e-23 96.3
MS.gene55601.t1 MTR_0008s0390 35.211 142 89 2 59 198 15 155 2.29e-23 96.7
MS.gene55601.t1 MTR_0008s0470 36.879 141 84 3 59 197 15 152 2.46e-23 97.1
MS.gene55601.t1 MTR_2g089420 37.226 137 74 3 59 184 13 148 2.60e-23 99.4
MS.gene55601.t1 MTR_1g085040 42.453 106 58 2 59 162 14 118 3.31e-23 98.2
MS.gene55601.t1 MTR_3g028740 39.200 125 74 2 36 159 2 125 3.68e-23 97.4
MS.gene55601.t1 MTR_1g086530 38.261 115 68 2 59 171 35 148 4.07e-23 96.3
MS.gene55601.t1 MTR_3g011610 42.056 107 61 1 59 164 39 145 4.11e-23 99.0
MS.gene55601.t1 MTR_3g074520 50.000 96 45 2 59 152 14 108 4.63e-23 97.4
MS.gene55601.t1 MTR_3g052430 40.517 116 68 1 59 173 43 158 4.65e-23 99.0
MS.gene55601.t1 MTR_5g010650 44.211 95 53 0 59 153 110 204 5.48e-23 98.6
MS.gene55601.t1 MTR_5g029840 45.361 97 52 1 59 154 14 110 7.10e-23 96.7
MS.gene55601.t1 MTR_2g011660 45.045 111 59 2 53 161 9 119 1.12e-22 96.3
MS.gene55601.t1 MTR_1g100653 42.056 107 61 1 59 164 14 120 1.27e-22 95.1
MS.gene55601.t1 MTR_7g450950 40.179 112 67 0 45 156 143 254 1.35e-22 95.9
MS.gene55601.t1 MTR_1g085640 41.905 105 60 1 59 162 14 118 1.36e-22 96.7
MS.gene55601.t1 MTR_0251s0050 41.071 112 62 3 59 167 15 125 1.72e-22 94.4
MS.gene55601.t1 MTR_2g099740 41.406 128 61 3 62 187 17 132 1.74e-22 96.3
MS.gene55601.t1 MTR_6g009430 41.584 101 58 1 55 154 10 110 1.89e-22 95.5
MS.gene55601.t1 MTR_6g006030 46.316 95 50 1 59 152 16 110 2.41e-22 92.4
MS.gene55601.t1 MTR_0063s0090 40.000 125 67 3 59 176 14 137 2.41e-22 92.8
MS.gene55601.t1 MTR_8g017440 45.455 99 51 2 56 152 11 108 2.59e-22 95.1
MS.gene55601.t1 MTR_8g017540 38.806 134 67 3 56 187 57 177 2.70e-22 95.9
MS.gene55601.t1 MTR_1g017000 34.694 147 88 4 56 197 11 154 2.82e-22 93.6
MS.gene55601.t1 MTR_7g110830 40.952 105 61 1 59 162 14 118 3.23e-22 95.1
MS.gene55601.t1 MTR_7g037130 42.857 98 56 0 59 156 145 242 3.47e-22 95.1
MS.gene55601.t1 MTR_2g067420 44.330 97 53 1 59 154 16 112 3.53e-22 94.7
MS.gene55601.t1 MTR_7g115650 47.423 97 50 1 59 154 14 110 3.60e-22 92.0
MS.gene55601.t1 MTR_3g461490 44.330 97 53 1 59 154 14 110 4.21e-22 94.4
MS.gene55601.t1 MTR_0008s0280 44.330 97 51 2 59 153 14 109 4.71e-22 92.4
MS.gene55601.t1 MTR_1g112760 45.000 100 52 2 56 153 12 110 4.76e-22 92.4
MS.gene55601.t1 MTR_5g062790 31.429 210 114 6 59 266 11 192 5.03e-22 93.6
MS.gene55601.t1 MTR_1g062940 40.708 113 59 3 49 159 3 109 5.96e-22 91.7
MS.gene55601.t1 MTR_4g063100 41.509 106 57 3 59 160 9 113 6.32e-22 92.4
MS.gene55601.t1 MTR_1g083630 39.669 121 69 3 44 163 1 118 6.40e-22 95.9
MS.gene55601.t1 MTR_8g042410 42.056 107 61 1 59 164 39 145 6.52e-22 95.5
MS.gene55601.t1 MTR_5g079670 45.361 97 52 1 58 153 12 108 7.46e-22 91.3
MS.gene55601.t1 MTR_4g091490 44.144 111 60 2 53 161 9 119 8.50e-22 94.0
MS.gene55601.t1 MTR_1g086510 37.288 118 73 1 55 171 19 136 1.00e-21 92.0
MS.gene55601.t1 MTR_7g111290 46.809 94 47 2 59 150 14 106 1.10e-21 94.0
MS.gene55601.t1 MTR_6g012690 34.101 217 128 7 59 271 14 219 1.35e-21 93.6
MS.gene55601.t1 MTR_4g125520 40.566 106 62 1 59 163 14 119 1.52e-21 92.4
MS.gene55601.t1 MTR_5g007370 46.939 98 49 2 59 154 14 110 1.54e-21 92.4
MS.gene55601.t1 MTR_5g014990 40.517 116 64 3 59 172 14 126 1.62e-21 92.4
MS.gene55601.t1 MTR_8g020490 44.792 96 52 1 58 152 9 104 1.66e-21 91.3
MS.gene55601.t1 MTR_3g077110 45.455 99 51 2 56 152 11 108 1.74e-21 92.8
MS.gene55601.t1 MTR_4g105130 43.878 98 54 1 56 152 11 108 1.98e-21 92.8
MS.gene55601.t1 MTR_8g027345 37.168 113 68 2 59 168 14 126 2.83e-21 91.7
MS.gene55601.t1 MTR_6g012180 36.154 130 79 2 59 187 14 140 5.83e-21 90.9
MS.gene55601.t1 MTR_1g045610 43.750 96 51 2 59 152 23 117 6.73e-21 89.7
MS.gene55601.t1 MTR_5g088610 37.190 121 74 2 59 177 11 131 7.02e-21 91.3
MS.gene55601.t1 MTR_0001s0360 44.330 97 53 1 59 154 9 105 8.98e-21 89.4
MS.gene55601.t1 MTR_1g076150 46.316 95 48 2 62 154 17 110 9.51e-21 89.4
MS.gene55601.t1 MTR_8g017500 45.161 93 48 2 62 152 17 108 9.58e-21 90.9
MS.gene55601.t1 MTR_1g057980 41.837 98 57 0 59 156 80 177 1.24e-20 89.7
MS.gene55601.t1 MTR_4g097570 42.857 98 53 2 59 153 14 111 1.30e-20 89.7
MS.gene55601.t1 MTR_0247s0040 45.263 95 51 1 59 152 9 103 1.37e-20 87.0
MS.gene55601.t1 MTR_1g073170 40.816 98 55 2 59 154 22 118 1.40e-20 89.0
MS.gene55601.t1 MTR_2g096380 41.837 98 54 2 59 154 8 104 1.64e-20 88.2
MS.gene55601.t1 MTR_3g103570 38.462 117 67 3 59 173 14 127 1.77e-20 90.1
MS.gene55601.t1 MTR_8g017350 45.361 97 51 1 56 150 11 107 1.96e-20 91.7
MS.gene55601.t1 MTR_7g010210 42.268 97 55 1 59 154 14 110 2.17e-20 89.7
MS.gene55601.t1 MTR_3g065440 41.739 115 63 3 59 170 14 127 2.20e-20 89.4
MS.gene55601.t1 MTR_4g073420 42.268 97 55 1 59 154 14 110 2.37e-20 89.0
MS.gene55601.t1 MTR_7g010210 42.268 97 55 1 59 154 14 110 2.38e-20 88.6
MS.gene55601.t1 MTR_4g478180 45.918 98 50 2 59 154 15 111 2.64e-20 89.7
MS.gene55601.t1 MTR_7g117730 41.489 94 54 1 62 154 17 110 2.95e-20 88.2
MS.gene55601.t1 MTR_7g076740 41.667 108 59 3 59 163 14 120 3.24e-20 89.0
MS.gene55601.t1 MTR_5g079290 43.299 97 54 1 59 154 19 115 3.28e-20 88.2
MS.gene55601.t1 MTR_2g095520 43.878 98 53 2 59 154 14 111 3.99e-20 89.0
MS.gene55601.t1 MTR_8g017390 43.434 99 54 1 56 152 11 109 4.40e-20 90.1
MS.gene55601.t1 MTR_1g017140 39.655 116 65 3 59 172 14 126 4.56e-20 89.0
MS.gene55601.t1 MTR_8g095390 40.625 96 56 1 59 153 14 109 5.05e-20 88.6
MS.gene55601.t1 MTR_8g017340 43.434 99 54 1 56 152 11 109 5.16e-20 90.1
MS.gene55601.t1 MTR_8g031360 36.416 173 93 9 59 227 15 174 5.16e-20 88.2
MS.gene55601.t1 MTR_5g079220 42.268 97 55 1 59 154 23 119 5.55e-20 87.8
MS.gene55601.t1 MTR_5g078140 45.918 98 50 2 59 154 14 110 5.71e-20 88.2
MS.gene55601.t1 MTR_5g088080 37.168 113 69 2 55 165 10 122 5.74e-20 87.4
MS.gene55601.t1 MTR_5g088150 37.168 113 69 2 55 165 10 122 5.74e-20 87.4
MS.gene55601.t1 MTR_5g488210 37.168 113 69 2 55 165 10 122 5.74e-20 87.4
MS.gene55601.t1 MTR_5g088640 37.168 113 69 2 55 165 10 122 6.55e-20 87.4
MS.gene55601.t1 MTR_4g121460 34.058 138 77 2 59 195 14 138 6.69e-20 88.6
MS.gene55601.t1 MTR_7g011170 39.024 123 71 3 59 178 14 135 6.70e-20 87.8
MS.gene55601.t1 MTR_1g043050 42.157 102 58 1 59 159 14 115 7.33e-20 87.0
MS.gene55601.t1 MTR_1g043080 42.157 102 58 1 59 159 14 115 7.46e-20 87.0
MS.gene55601.t1 MTR_8g060940 44.898 98 51 2 59 154 9 105 1.03e-19 86.3
MS.gene55601.t1 MTR_5g488170 37.168 113 69 2 55 165 10 122 1.05e-19 86.3
MS.gene55601.t1 MTR_4g097570 42.268 97 54 2 59 153 14 110 1.38e-19 87.0
MS.gene55601.t1 MTR_4g082230 40.517 116 67 2 59 172 14 129 1.55e-19 88.2
MS.gene55601.t1 MTR_5g078910 42.268 97 55 1 59 154 9 105 1.60e-19 86.7
MS.gene55601.t1 MTR_7g087130 35.821 134 84 2 59 191 14 146 1.63e-19 87.4
MS.gene55601.t1 MTR_4g485530 43.299 97 52 2 58 152 13 108 1.68e-19 84.3
MS.gene55601.t1 MTR_2g034790 38.182 110 67 1 59 167 14 123 1.68e-19 87.0
MS.gene55601.t1 MTR_4g057635 43.000 100 55 2 55 152 10 109 1.75e-19 87.0
MS.gene55601.t1 MTR_5g078860 43.299 97 54 1 59 154 9 105 1.84e-19 86.7
MS.gene55601.t1 MTR_3g039990 42.268 97 55 1 59 154 15 111 2.21e-19 86.7
MS.gene55601.t1 MTR_5g078800 42.268 97 55 1 59 154 9 105 2.21e-19 85.9
MS.gene55601.t1 MTR_7g096930 36.601 153 89 3 59 203 14 166 2.81e-19 85.9
MS.gene55601.t1 MTR_8g006470 37.956 137 71 4 59 181 12 148 3.01e-19 85.9
MS.gene55601.t1 MTR_2g088170 44.444 108 57 2 59 164 31 137 3.11e-19 87.4
MS.gene55601.t1 MTR_2g033170 38.596 114 69 1 59 171 26 139 3.35e-19 86.3
MS.gene55601.t1 MTR_7g102110 42.857 98 54 2 59 154 14 111 3.47e-19 85.5
MS.gene55601.t1 MTR_3g097450 39.796 98 58 1 58 154 13 110 3.74e-19 85.9
MS.gene55601.t1 MTR_5g078950 40.777 103 59 2 54 154 3 105 4.89e-19 84.7
MS.gene55601.t1 MTR_3g083540 40.206 97 57 1 59 154 43 139 5.34e-19 85.5
MS.gene55601.t1 MTR_0140s0030 41.176 102 59 1 59 159 15 116 5.79e-19 85.9
MS.gene55601.t1 MTR_0489s0020 41.176 102 59 1 59 159 15 116 5.79e-19 85.9
MS.gene55601.t1 MTR_4g128670 41.837 98 55 2 59 154 14 111 6.33e-19 85.9
MS.gene55601.t1 MTR_4g102380 42.857 98 53 2 59 154 14 110 8.47e-19 84.3
MS.gene55601.t1 MTR_6g055910 54.839 62 28 0 92 153 21 82 9.66e-19 84.0
MS.gene55601.t1 MTR_4g082290 40.517 116 67 2 59 172 14 129 1.09e-18 85.5
MS.gene55601.t1 MTR_0193s0090 42.268 97 55 1 59 154 9 105 1.27e-18 82.4
MS.gene55601.t1 MTR_0197s0010 44.211 95 50 2 62 154 6 99 1.32e-18 82.8
MS.gene55601.t1 MTR_7g017260 38.983 118 66 3 45 156 12 129 1.63e-18 83.6
MS.gene55601.t1 MTR_5g079120 38.261 115 68 2 59 172 63 175 1.72e-18 84.0
MS.gene55601.t1 MTR_6g090405 42.308 104 54 3 55 154 10 111 2.40e-18 82.8
MS.gene55601.t1 MTR_7g061550 35.714 112 69 1 59 167 7 118 3.15e-18 84.0
MS.gene55601.t1 MTR_5g078930 34.783 138 80 2 59 186 11 148 3.64e-18 81.6
MS.gene55601.t1 MTR_4g029540 40.000 105 61 2 59 161 12 116 4.40e-18 82.8
MS.gene55601.t1 MTR_4g123040 38.596 114 69 1 59 171 26 139 4.60e-18 82.8
MS.gene55601.t1 MTR_1g021230 38.462 104 63 1 59 161 59 162 1.00e-17 83.2
MS.gene55601.t1 MTR_4g063100 46.479 71 36 1 92 160 14 84 3.84e-17 79.0
MS.gene55601.t1 MTR_8g468380 32.110 109 74 0 62 170 25 133 9.56e-17 80.1
MS.gene55601.t1 MTR_5g038910 33.333 114 74 1 62 175 29 140 1.12e-16 80.1
MS.gene55601.t1 MTR_5g038910 33.333 114 74 1 62 175 29 140 1.55e-16 79.3
MS.gene55601.t1 MTR_3g045430 33.010 103 68 1 53 154 9 111 1.56e-16 78.6
MS.gene55601.t1 MTR_7g111290 52.542 59 28 0 92 150 6 64 4.27e-16 77.8
MS.gene55601.t1 MTR_2g096380 49.180 61 31 0 92 152 23 83 5.29e-16 75.5
MS.gene55601.t1 MTR_7g109320 38.235 102 62 1 59 159 14 115 3.51e-14 72.4
MS.gene55601.t1 MTR_5g007300 45.333 75 40 1 59 132 66 140 8.71e-14 67.8
MS.gene55601.t1 MTR_1g008970 46.154 65 35 0 85 149 117 181 1.69e-13 69.3
MS.gene55601.t1 MTR_1g085880 39.623 106 62 2 62 165 17 122 3.27e-13 67.4
MS.gene55601.t1 MTR_6g080360 34.409 93 60 1 60 152 480 571 5.53e-13 69.7
MS.gene55601.t1 MTR_4g128190 37.931 87 52 2 92 177 34 119 6.50e-13 67.4
MS.gene55601.t1 MTR_1g085770 39.623 106 62 2 62 165 17 122 8.06e-13 67.8
MS.gene55601.t1 MTR_6g080360 34.409 93 60 1 60 152 260 351 9.22e-13 68.9
MS.gene55601.t1 MTR_7g035300 46.875 64 33 1 93 156 99 161 2.73e-11 62.4
MS.gene55601.t1 MTR_7g115550 36.957 92 57 1 62 153 10 100 3.94e-11 63.9
MS.gene55601.t1 MTR_7g115550 36.957 92 57 1 62 153 10 100 4.41e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55601.t1 AT4G33450 38.589 241 139 4 52 286 10 247 5.84e-51 168
MS.gene55601.t1 AT1G69560 33.579 271 122 4 42 286 90 328 2.60e-48 164
MS.gene55601.t1 AT1G69560 33.579 271 122 4 42 286 106 344 3.93e-48 164
MS.gene55601.t1 AT1G26780 55.556 126 55 1 59 184 98 222 2.29e-44 152
MS.gene55601.t1 AT1G17950 60.952 105 41 0 58 162 4 108 3.19e-44 150
MS.gene55601.t1 AT1G26780 55.556 126 55 1 59 184 98 222 5.91e-44 153
MS.gene55601.t1 AT5G17800 36.162 271 125 8 41 286 74 321 3.02e-42 148
MS.gene55601.t1 AT3G29020 56.637 113 49 0 58 170 64 176 2.77e-41 142
MS.gene55601.t1 AT1G73410 36.434 258 116 6 58 288 5 241 4.26e-41 142
MS.gene55601.t1 AT3G29020 56.637 113 49 0 58 170 66 178 2.36e-40 142
MS.gene55601.t1 AT1G73410 60.952 105 41 0 58 162 5 109 3.35e-40 139
MS.gene55601.t1 AT3G55730 50.476 105 52 0 59 163 56 160 2.14e-31 120
MS.gene55601.t1 AT5G39700 52.525 99 47 0 60 158 57 155 1.00e-29 111
MS.gene55601.t1 AT2G39880 48.598 107 51 1 47 153 42 144 1.03e-28 113
MS.gene55601.t1 AT5G67300 45.545 101 55 0 59 159 6 106 1.21e-28 111
MS.gene55601.t1 AT4G37260 43.925 107 60 0 53 159 7 113 6.38e-28 110
MS.gene55601.t1 AT3G09230 47.525 101 53 0 59 159 55 155 9.00e-28 110
MS.gene55601.t1 AT2G25230 45.098 102 56 0 59 160 26 127 2.41e-27 106
MS.gene55601.t1 AT5G11050 48.515 101 52 0 59 159 105 205 7.33e-27 108
MS.gene55601.t1 AT5G58850 48.515 101 52 0 59 159 105 205 1.49e-26 108
MS.gene55601.t1 AT3G50060 42.574 101 58 0 59 159 6 106 1.88e-26 105
MS.gene55601.t1 AT5G40360 44.000 100 56 0 59 158 158 257 2.22e-26 106
MS.gene55601.t1 AT2G23290 43.564 101 57 0 59 159 13 113 7.55e-26 104
MS.gene55601.t1 AT3G27785 45.098 102 56 0 59 160 189 290 1.76e-25 105
MS.gene55601.t1 AT4G18770 46.535 101 54 0 59 159 217 317 2.78e-25 104
MS.gene55601.t1 AT3G53200 44.554 101 53 2 62 160 14 113 4.11e-25 100
MS.gene55601.t1 AT5G11510 42.593 108 62 0 59 166 81 188 6.25e-25 104
MS.gene55601.t1 AT5G11510 42.593 108 62 0 59 166 81 188 6.25e-25 104
MS.gene55601.t1 AT5G11510 42.593 108 62 0 59 166 81 188 6.25e-25 104
MS.gene55601.t1 AT1G63910 46.939 98 51 1 56 152 11 108 7.56e-25 102
MS.gene55601.t1 AT5G11510 42.593 108 62 0 59 166 81 188 8.26e-25 104
MS.gene55601.t1 AT5G11510 42.593 108 62 0 59 166 81 188 9.02e-25 104
MS.gene55601.t1 AT2G47190 41.818 110 63 1 59 167 22 131 1.10e-24 100
MS.gene55601.t1 AT3G11440 42.991 107 60 1 59 164 43 149 1.14e-24 103
MS.gene55601.t1 AT3G11440 42.991 107 60 1 59 164 43 149 1.25e-24 103
MS.gene55601.t1 AT3G11440 42.991 107 60 1 59 164 43 149 1.25e-24 103
MS.gene55601.t1 AT3G11440 42.991 107 60 1 59 164 43 149 1.25e-24 103
MS.gene55601.t1 AT3G48920 46.465 99 52 1 56 153 17 115 2.91e-24 99.0
MS.gene55601.t1 AT2G26950 43.119 109 50 3 58 161 17 118 3.20e-24 100
MS.gene55601.t1 AT3G12720 45.000 100 52 2 56 153 21 119 5.03e-24 99.4
MS.gene55601.t1 AT3G09370 47.368 95 50 0 59 153 130 224 5.48e-24 101
MS.gene55601.t1 AT3G09370 47.368 95 50 0 59 153 135 229 5.99e-24 101
MS.gene55601.t1 AT3G09370 47.368 95 50 0 59 153 143 237 6.37e-24 101
MS.gene55601.t1 AT4G28110 44.643 112 60 2 59 168 14 125 6.82e-24 98.6
MS.gene55601.t1 AT5G02320 46.316 95 51 0 59 153 127 221 7.39e-24 101
MS.gene55601.t1 AT5G02320 46.316 95 51 0 59 153 127 221 7.39e-24 101
MS.gene55601.t1 AT4G05100 47.059 102 53 1 59 159 15 116 7.60e-24 99.0
MS.gene55601.t1 AT4G25560 46.875 96 50 1 59 153 12 107 7.69e-24 98.2
MS.gene55601.t1 AT1G18570 39.041 146 69 4 59 195 15 149 7.76e-24 99.8
MS.gene55601.t1 AT5G02320 46.316 95 51 0 59 153 67 161 9.14e-24 100
MS.gene55601.t1 AT5G54230 47.619 105 53 2 59 161 14 118 1.14e-23 98.6
MS.gene55601.t1 AT5G06100 43.269 104 58 1 59 161 34 137 1.27e-23 100
MS.gene55601.t1 AT5G06100 43.269 104 58 1 59 161 34 137 1.41e-23 100
MS.gene55601.t1 AT5G06100 43.269 104 58 1 59 161 34 137 1.41e-23 100
MS.gene55601.t1 AT5G06100 43.269 104 58 1 59 161 34 137 1.41e-23 100
MS.gene55601.t1 AT5G06100 43.269 104 58 1 59 161 34 137 1.41e-23 100
MS.gene55601.t1 AT5G07700 46.078 102 54 1 59 159 14 115 1.54e-23 98.6
MS.gene55601.t1 AT5G07700 46.078 102 54 1 59 159 14 115 1.54e-23 98.6
MS.gene55601.t1 AT5G14750 41.509 106 61 1 50 154 9 114 1.55e-23 95.5
MS.gene55601.t1 AT5G61420 44.762 105 57 1 59 162 14 118 2.36e-23 98.6
MS.gene55601.t1 AT3G23250 44.118 102 56 1 59 159 14 115 2.45e-23 97.1
MS.gene55601.t1 AT1G79180 44.860 107 56 2 55 159 12 117 2.82e-23 97.1
MS.gene55601.t1 AT5G12870 38.532 109 66 1 56 163 17 125 2.93e-23 96.7
MS.gene55601.t1 AT3G27810 39.231 130 76 2 59 185 22 151 2.95e-23 95.5
MS.gene55601.t1 AT4G01680 34.211 152 88 2 56 206 11 151 3.48e-23 95.5
MS.gene55601.t1 AT5G60890 42.105 114 64 2 59 170 14 127 5.07e-23 96.3
MS.gene55601.t1 AT5G40350 36.000 150 87 4 59 202 19 165 5.10e-23 94.7
MS.gene55601.t1 AT1G48000 46.739 92 48 1 62 152 37 128 5.20e-23 95.1
MS.gene55601.t1 AT3G08500 40.351 114 67 1 49 161 22 135 5.54e-23 97.1
MS.gene55601.t1 AT5G65230 51.042 96 44 2 59 152 14 108 8.52e-23 95.9
MS.gene55601.t1 AT1G57560 35.915 142 73 3 59 183 14 154 8.71e-23 95.5
MS.gene55601.t1 AT5G52600 43.299 97 54 1 59 154 14 110 9.90e-23 93.6
MS.gene55601.t1 AT3G02940 48.421 95 48 1 59 152 14 108 9.91e-23 95.9
MS.gene55601.t1 AT3G01530 46.316 95 50 1 59 152 27 121 1.06e-22 93.6
MS.gene55601.t1 AT4G01680 34.211 152 88 2 56 206 11 151 1.06e-22 96.3
MS.gene55601.t1 AT5G40330 34.694 147 89 2 52 191 1 147 1.07e-22 94.0
MS.gene55601.t1 AT5G40430 41.748 103 59 1 58 160 53 154 1.12e-22 94.7
MS.gene55601.t1 AT4G17785 46.939 98 49 2 59 154 15 111 1.16e-22 96.3
MS.gene55601.t1 AT4G17785 46.939 98 49 2 59 154 15 111 1.28e-22 96.3
MS.gene55601.t1 AT3G02940 48.421 95 48 1 59 152 14 108 1.31e-22 95.9
MS.gene55601.t1 AT3G02940 48.421 95 48 1 59 152 14 108 1.31e-22 95.9
MS.gene55601.t1 AT4G26930 40.187 107 63 1 59 164 21 127 1.42e-22 96.7
MS.gene55601.t1 AT2G32460 42.857 105 57 2 59 161 20 123 1.52e-22 97.4
MS.gene55601.t1 AT2G32460 42.857 105 57 2 59 161 8 111 1.83e-22 97.1
MS.gene55601.t1 AT3G01140 41.379 116 66 2 59 172 14 129 1.87e-22 95.5
MS.gene55601.t1 AT5G07690 45.361 97 52 1 59 154 14 110 2.24e-22 95.5
MS.gene55601.t1 AT5G26660 36.429 140 85 3 56 192 11 149 2.32e-22 95.5
MS.gene55601.t1 AT1G57560 40.870 115 64 3 59 170 14 127 2.36e-22 94.7
MS.gene55601.t1 AT3G61250 31.718 227 125 6 59 262 14 233 2.41e-22 94.7
MS.gene55601.t1 AT3G30210 38.793 116 66 2 59 173 29 140 2.46e-22 94.0
MS.gene55601.t1 AT1G25340 39.831 118 67 1 46 163 7 120 2.52e-22 94.0
MS.gene55601.t1 AT1G25340 40.336 119 70 1 46 163 7 125 2.55e-22 94.4
MS.gene55601.t1 AT3G01140 41.379 116 66 2 59 172 57 172 2.84e-22 95.9
MS.gene55601.t1 AT1G25340 39.831 118 67 1 46 163 7 120 3.73e-22 94.4
MS.gene55601.t1 AT1G09540 43.119 109 57 3 59 163 14 121 3.74e-22 95.1
MS.gene55601.t1 AT5G15310 41.379 116 66 2 59 172 14 129 3.89e-22 94.4
MS.gene55601.t1 AT5G52260 48.544 103 50 2 59 159 14 115 3.99e-22 93.6
MS.gene55601.t1 AT5G15310 41.379 116 66 2 59 172 14 129 4.09e-22 94.4
MS.gene55601.t1 AT3G28470 44.211 95 52 1 59 152 14 108 4.70e-22 94.0
MS.gene55601.t1 AT3G27920 34.586 133 86 1 54 185 11 143 6.00e-22 92.0
MS.gene55601.t1 AT5G35550 41.818 110 63 1 44 152 1 110 6.03e-22 92.8
MS.gene55601.t1 AT4G21440 47.423 97 50 1 59 154 14 110 6.22e-22 94.4
MS.gene55601.t1 AT1G74430 44.118 102 56 1 59 159 14 115 6.79e-22 92.8
MS.gene55601.t1 AT4G32730 42.105 95 55 0 59 153 87 181 7.79e-22 95.9
MS.gene55601.t1 AT3G53200 52.174 69 33 0 92 160 12 80 8.07e-22 91.3
MS.gene55601.t1 AT1G68320 42.308 104 57 2 62 163 24 126 8.19e-22 92.8
MS.gene55601.t1 AT4G32730 42.105 95 55 0 59 153 87 181 8.33e-22 95.9
MS.gene55601.t1 AT4G32730 42.105 95 55 0 59 153 87 181 8.33e-22 95.9
MS.gene55601.t1 AT4G32730 42.105 95 55 0 59 153 87 181 8.33e-22 95.9
MS.gene55601.t1 AT4G32730 42.105 95 55 0 59 153 87 181 8.33e-22 95.9
MS.gene55601.t1 AT5G10280 45.918 98 50 2 59 154 14 110 1.06e-21 93.6
MS.gene55601.t1 AT1G16490 43.396 106 59 1 55 159 12 117 1.19e-21 92.4
MS.gene55601.t1 AT4G00540 40.179 112 64 1 59 167 103 214 1.55e-21 94.0
MS.gene55601.t1 AT3G13890 44.565 92 50 1 62 152 17 108 1.66e-21 93.2
MS.gene55601.t1 AT5G15310 44.118 102 56 1 59 159 14 115 1.67e-21 91.3
MS.gene55601.t1 AT4G00540 40.179 112 64 1 59 167 101 212 2.39e-21 93.6
MS.gene55601.t1 AT4G01680 32.927 164 86 3 56 206 11 163 2.50e-21 92.4
MS.gene55601.t1 AT1G74080 44.211 95 52 1 59 152 14 108 2.80e-21 92.4
MS.gene55601.t1 AT1G34670 46.392 97 51 1 59 154 14 110 3.41e-21 92.4
MS.gene55601.t1 AT1G18710 42.453 106 59 2 59 162 14 119 3.61e-21 90.9
MS.gene55601.t1 AT3G12820 41.748 103 57 2 59 159 16 117 5.35e-21 89.7
MS.gene55601.t1 AT1G66230 45.283 106 53 3 59 160 14 118 5.54e-21 90.5
MS.gene55601.t1 AT1G35515 40.196 102 60 1 59 159 14 115 7.93e-21 88.6
MS.gene55601.t1 AT4G38620 42.268 97 55 1 59 154 14 110 9.67e-21 89.7
MS.gene55601.t1 AT1G22640 43.243 111 53 4 59 165 14 118 1.09e-20 89.4
MS.gene55601.t1 AT5G23000 43.269 104 53 3 55 154 10 111 1.11e-20 90.5
MS.gene55601.t1 AT5G16770 45.361 97 52 1 59 154 14 110 1.32e-20 90.1
MS.gene55601.t1 AT5G16770 45.361 97 52 1 59 154 14 110 1.32e-20 90.1
MS.gene55601.t1 AT3G13890 41.584 101 49 2 62 152 17 117 1.40e-20 90.9
MS.gene55601.t1 AT5G56110 43.158 95 53 1 59 152 14 108 1.60e-20 90.1
MS.gene55601.t1 AT4G09460 39.815 108 61 2 59 165 14 118 1.60e-20 88.2
MS.gene55601.t1 AT1G56160 42.453 106 58 2 56 159 13 117 1.77e-20 89.4
MS.gene55601.t1 AT5G65790 42.593 108 57 3 59 164 14 118 1.80e-20 90.5
MS.gene55601.t1 AT5G16770 45.361 97 52 1 59 154 14 110 1.92e-20 90.1
MS.gene55601.t1 AT5G16770 45.361 97 52 1 59 154 14 110 1.92e-20 90.1
MS.gene55601.t1 AT2G26960 40.952 105 61 1 58 161 21 125 2.77e-20 90.5
MS.gene55601.t1 AT2G16720 41.071 112 56 4 58 165 13 118 3.62e-20 88.2
MS.gene55601.t1 AT5G62470 41.667 96 56 0 59 154 14 109 3.64e-20 89.4
MS.gene55601.t1 AT3G49690 44.898 98 52 2 59 154 14 111 3.68e-20 89.0
MS.gene55601.t1 AT5G55020 39.252 107 64 1 59 164 28 134 3.85e-20 90.5
MS.gene55601.t1 AT3G47600 43.299 97 54 1 59 154 14 110 4.11e-20 89.0
MS.gene55601.t1 AT3G24310 43.750 96 51 2 59 152 20 114 4.47e-20 87.8
MS.gene55601.t1 AT5G49620 39.474 114 68 1 59 171 28 141 4.54e-20 88.6
MS.gene55601.t1 AT4G13480 42.708 96 52 2 59 152 8 102 4.95e-20 87.4
MS.gene55601.t1 AT4G34990 41.837 98 56 1 58 154 13 110 5.36e-20 87.8
MS.gene55601.t1 AT5G59780 38.679 106 62 2 59 162 10 114 5.52e-20 87.0
MS.gene55601.t1 AT5G57620 43.878 98 53 2 59 154 14 111 7.24e-20 88.2
MS.gene55601.t1 AT3G46130 39.623 106 61 2 59 162 11 115 7.81e-20 87.0
MS.gene55601.t1 AT4G12350 43.119 109 57 3 59 163 14 121 8.87e-20 87.4
MS.gene55601.t1 AT1G06180 43.689 103 55 2 59 159 14 115 1.00e-19 86.3
MS.gene55601.t1 AT3G13540 40.206 97 57 1 59 154 25 121 1.28e-19 86.3
MS.gene55601.t1 AT5G14340 40.385 104 59 2 62 163 29 131 1.31e-19 86.7
MS.gene55601.t1 AT5G16600 42.056 107 59 2 59 163 14 119 1.44e-19 87.4
MS.gene55601.t1 AT1G79180 35.252 139 56 2 55 159 12 150 2.24e-19 87.0
MS.gene55601.t1 AT1G74650 43.299 97 54 1 59 154 14 110 2.64e-19 86.7
MS.gene55601.t1 AT5G49330 38.235 102 62 1 59 159 14 115 2.97e-19 86.7
MS.gene55601.t1 AT1G08810 43.299 97 54 1 59 154 14 110 3.09e-19 85.9
MS.gene55601.t1 AT4G37780 39.823 113 63 3 59 169 14 123 3.10e-19 86.3
MS.gene55601.t1 AT3G62610 39.216 102 61 1 59 159 14 115 3.68e-19 86.3
MS.gene55601.t1 AT4G22680 44.898 98 51 2 59 154 14 110 5.99e-19 84.7
MS.gene55601.t1 AT2G31180 41.346 104 59 2 62 163 17 120 7.02e-19 84.3
MS.gene55601.t1 AT3G28910 42.268 97 55 1 59 154 14 110 7.32e-19 85.5
MS.gene55601.t1 AT1G66370 40.000 105 62 1 59 162 10 114 9.12e-19 84.0
MS.gene55601.t1 AT2G47460 34.426 122 75 2 59 179 14 131 9.94e-19 85.5
MS.gene55601.t1 AT3G60460 41.121 107 61 2 59 163 13 119 1.05e-18 84.7
MS.gene55601.t1 AT5G62470 41.237 97 56 1 59 154 14 110 1.14e-18 85.1
MS.gene55601.t1 AT3G27810 40.625 96 55 1 92 185 7 102 3.10e-18 80.9
MS.gene55601.t1 AT3G06490 37.391 115 69 2 59 171 21 134 3.48e-18 83.6
MS.gene55601.t1 AT5G14750 50.000 62 31 0 92 153 18 79 6.45e-18 79.7
MS.gene55601.t1 AT5G40350 36.207 116 66 3 92 202 8 120 7.60e-18 79.3
MS.gene55601.t1 AT2G36890 38.532 109 62 3 62 168 17 122 1.46e-17 81.3
MS.gene55601.t1 AT3G12820 50.000 68 34 0 92 159 2 69 2.12e-17 79.0
MS.gene55601.t1 AT2G36890 38.532 109 62 3 62 168 58 163 2.44e-17 81.3
MS.gene55601.t1 AT5G59780 45.070 71 39 0 92 162 23 93 3.75e-17 78.6
MS.gene55601.t1 AT5G35550 54.839 62 28 0 92 153 53 114 5.29e-17 79.3
MS.gene55601.t1 AT3G46130 45.070 71 39 0 92 162 23 93 8.08e-17 78.2
MS.gene55601.t1 AT5G26660 40.230 87 51 1 92 177 17 103 8.49e-17 79.3
MS.gene55601.t1 AT3G46130 45.070 71 39 0 92 162 13 83 9.14e-17 77.8
MS.gene55601.t1 AT2G02820 36.000 100 64 0 62 161 33 132 1.10e-16 79.3
MS.gene55601.t1 AT5G49620 35.156 128 68 2 59 171 28 155 1.34e-16 79.0
MS.gene55601.t1 AT2G02820 36.000 100 64 0 62 161 33 132 1.52e-16 79.7
MS.gene55601.t1 AT2G02820 36.000 100 64 0 62 161 33 132 1.52e-16 79.7
MS.gene55601.t1 AT2G37630 32.468 154 85 3 59 209 4 141 1.59e-16 79.3
MS.gene55601.t1 AT1G56650 37.857 140 80 3 59 197 10 143 2.21e-16 77.4
MS.gene55601.t1 AT1G14350 35.000 100 65 0 62 161 28 127 2.77e-16 79.0
MS.gene55601.t1 AT1G14350 35.000 100 65 0 62 161 28 127 2.77e-16 79.0
MS.gene55601.t1 AT1G66380 43.299 97 54 1 59 154 10 106 1.20e-15 72.8
MS.gene55601.t1 AT5G62320 37.500 104 55 3 59 153 15 117 2.78e-15 73.9
MS.gene55601.t1 AT3G18100 33.094 139 79 4 59 187 498 632 3.57e-14 73.2
MS.gene55601.t1 AT3G18100 37.500 88 55 0 59 146 546 633 3.60e-14 73.2
MS.gene55601.t1 AT3G47600 49.206 63 32 0 92 154 42 104 3.81e-14 72.0
MS.gene55601.t1 AT1G66390 43.299 97 54 1 59 154 10 106 4.20e-14 70.9
MS.gene55601.t1 AT3G18100 37.500 88 55 0 59 146 385 472 5.90e-14 72.4
MS.gene55601.t1 AT3G18100 37.500 88 55 0 59 146 333 420 5.93e-14 72.4
MS.gene55601.t1 AT1G66380 53.226 62 29 0 92 153 11 72 2.68e-11 59.7
MS.gene55601.t1 AT1G09770 36.170 94 59 1 62 155 10 102 6.87e-11 63.2

Find 60 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAACAGTGGATCAATTT+TGG 0.114061 6.2:+18892051 MS.gene55601:CDS
TCCTCTTCTTCCTTACTTAA+AGG 0.144161 6.2:-18891329 None:intergenic
CAGGGAAAAGTTGTAGATTA+AGG 0.258631 6.2:+18891270 MS.gene55601:intron
CGAAATCCCAAAGGGTGTTT+TGG 0.278766 6.2:-18890782 None:intergenic
TTGATGAGTGAGATATCATT+TGG 0.309155 6.2:-18890359 None:intergenic
TTGCAGCTTCATACACTTCA+TGG 0.319080 6.2:+18891359 MS.gene55601:CDS
TGAGTTTGAATCTGAATGAT+TGG 0.332521 6.2:-18891996 None:intergenic
GCCTTTACCTAGTTATCAAA+TGG 0.371964 6.2:+18891580 MS.gene55601:CDS
AGTGCATTATCTGTCCTTCC+AGG 0.376684 6.2:-18891413 None:intergenic
AGATGGTTTCCAATGAGCTT+TGG 0.402226 6.2:-18890878 None:intergenic
GAAAAGTCCAAAACACCCTT+TGG 0.403018 6.2:+18890775 MS.gene55601:CDS
TTTCATAGCACTGCAAGCTT+TGG 0.403490 6.2:-18891924 None:intergenic
AGGCCTAGTGAGGTTGAGAT+TGG 0.413476 6.2:-18891561 None:intergenic
TTTGCAAATGTGTGCCCATT+TGG 0.423551 6.2:-18891384 None:intergenic
TGACCATGCTCTCATTAGGT+TGG 0.427843 6.2:-18890819 None:intergenic
CTAAGCCTTCCAAAGCTCAT+TGG 0.430105 6.2:+18890869 MS.gene55601:CDS
TTGAGATTGGATTCATCAAT+GGG 0.434612 6.2:-18891548 None:intergenic
AACATTGCTGAACAACTAGA+AGG 0.460555 6.2:+18890955 MS.gene55601:CDS
CTTTGGGATTTCGAACCCTC+CGG 0.465071 6.2:+18890792 MS.gene55601:CDS
ATACACTTCATGGTACCAAA+TGG 0.473150 6.2:+18891369 MS.gene55601:CDS
GTTGAGATTGGATTCATCAA+TGG 0.476110 6.2:-18891549 None:intergenic
CAAAAGAGAACCTTTAAGTA+AGG 0.476977 6.2:+18891319 MS.gene55601:CDS
GTTTAACAATGTGTCCCAAA+TGG 0.480676 6.2:+18891949 MS.gene55601:CDS
AAAAGTCCAAAACACCCTTT+GGG 0.480946 6.2:+18890776 MS.gene55601:CDS
CACATTTGCAAACACTTCCC+TGG 0.483510 6.2:+18891395 MS.gene55601:CDS
AGTATACCCATTTGATAACT+AGG 0.491035 6.2:-18891587 None:intergenic
GAACAACTAGAAGGAAGAAC+AGG 0.493534 6.2:+18890964 MS.gene55601:CDS
TCTTGGAGTAGGTGATACAT+AGG 0.495278 6.2:+18892123 MS.gene55601:CDS
AAATCATTATCATGTGATCA+AGG 0.497071 6.2:+18891439 MS.gene55601:CDS
CCTTTACCTAGTTATCAAAT+GGG 0.499079 6.2:+18891581 MS.gene55601:CDS
CTCTCATTAGGTTGGATCAC+CGG 0.504011 6.2:-18890811 None:intergenic
CCCATTTGATAACTAGGTAA+AGG 0.515252 6.2:-18891581 None:intergenic
TACACTTCATGGTACCAAAT+GGG 0.518845 6.2:+18891370 MS.gene55601:CDS
ACCTTTAAGTAAGGAAGAAG+AGG 0.519621 6.2:+18891328 MS.gene55601:CDS
TGATCAAGGCTAGGAGGCAA+AGG 0.526772 6.2:+18891453 MS.gene55601:CDS
TTGAATCTGAATGATTGGAT+TGG 0.533488 6.2:-18891991 None:intergenic
TGATGAGTGAGATATCATTT+GGG 0.541744 6.2:-18890358 None:intergenic
AATCCAATCTCAACCTCACT+AGG 0.546026 6.2:+18891558 MS.gene55601:CDS
AAACAACTTATCGCTGATCA+TGG 0.546186 6.2:+18890916 MS.gene55601:CDS
ACTCCCCTTCAGGGTCATGT+TGG 0.552989 6.2:+18890739 MS.gene55601:intron
CTTGGAGTAGGTGATACATA+GGG 0.561107 6.2:+18892124 MS.gene55601:CDS
GGTTTCCAATGAGCTTTGGA+AGG 0.572161 6.2:-18890874 None:intergenic
CATTCAGATTCAAACTCAGA+AGG 0.574102 6.2:+18892001 MS.gene55601:CDS
TTTGCAAACACTTCCCTGGA+AGG 0.576200 6.2:+18891399 MS.gene55601:CDS
TCATTAGGTTGGATCACCGG+AGG 0.577019 6.2:-18890808 None:intergenic
GTGCATTATCTGTCCTTCCA+GGG 0.578780 6.2:-18891412 None:intergenic
TTAAGCTTAGCATCTTCAGA+TGG 0.584279 6.2:-18890895 None:intergenic
TTCATCAATGGGGCTTGTGA+TGG 0.589265 6.2:-18891537 None:intergenic
ATTATCATGTGATCAAGGCT+AGG 0.595859 6.2:+18891444 MS.gene55601:CDS
GATCAAGGCTAGGAGGCAAA+GGG 0.603015 6.2:+18891454 MS.gene55601:CDS
CATTAGGTTGGATCACCGGA+GGG 0.604916 6.2:-18890807 None:intergenic
GGAGGGTTCGAAATCCCAAA+GGG 0.614243 6.2:-18890790 None:intergenic
GGAAAAGTTGTAGATTAAGG+TGG 0.615713 6.2:+18891273 MS.gene55601:CDS
GATCCAACCTAATGAGAGCA+TGG 0.627553 6.2:+18890816 MS.gene55601:CDS
CGGAGGGTTCGAAATCCCAA+AGG 0.628034 6.2:-18890791 None:intergenic
ATCATGTGATCAAGGCTAGG+AGG 0.646731 6.2:+18891447 MS.gene55601:CDS
AACTAGGTAAAGGCCTAGTG+AGG 0.660873 6.2:-18891571 None:intergenic
GGGTCATGTTGGTAACAATG+AGG 0.688477 6.2:+18890750 MS.gene55601:intron
GCTGCAACAAACATGAACAG+TGG 0.695944 6.2:+18892040 MS.gene55601:CDS
TGAGATTGGATTCATCAATG+GGG 0.718204 6.2:-18891547 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTTTAACGAAA+TGG + chr6.2:18891041-18891060 MS.gene55601:intron 10.0%
!!! TATCAAACAATTTTAAATAT+TGG + chr6.2:18891630-18891649 MS.gene55601:intron 10.0%
!!! TTTTTTTTTTTTTGTGATAA+TGG + chr6.2:18891241-18891260 MS.gene55601:intron 10.0%
!! ATAAAAAAAAAACAACAACA+TGG - chr6.2:18891852-18891871 None:intergenic 15.0%
!! TGTTTGATAAGATAAAATAA+AGG - chr6.2:18891619-18891638 None:intergenic 15.0%
!!! AAATTTTTCAAGCAATTTAA+AGG - chr6.2:18891756-18891775 None:intergenic 15.0%
!!! TTTTATTGTGCTATATTTTT+AGG + chr6.2:18891866-18891885 MS.gene55601:intron 15.0%
!! AAATAAGCAAGTAAAAAAGA+AGG - chr6.2:18890552-18890571 None:intergenic 20.0%
!! AACTTAAGTAAAGAGAAAAA+TGG - chr6.2:18890414-18890433 None:intergenic 20.0%
!! ATGAAAATCATTGTTAAATG+AGG - chr6.2:18891728-18891747 None:intergenic 20.0%
! AAATCATTATCATGTGATCA+AGG + chr6.2:18891439-18891458 MS.gene55601:CDS 25.0%
! AACTTGAAAAATGATGGTTA+TGG + chr6.2:18890661-18890680 MS.gene55601:intron 25.0%
! ACTATCATCTATTGCAAAAA+AGG + chr6.2:18891481-18891500 MS.gene55601:CDS 25.0%
! AGGTTTACTTGAAAAAAGAA+TGG + chr6.2:18891886-18891905 MS.gene55601:intron 25.0%
! TATTGCAATTATTGTTGTAG+TGG - chr6.2:18891660-18891679 None:intergenic 25.0%
! TCACTAAACTTGAAAAATGA+TGG + chr6.2:18890655-18890674 MS.gene55601:intron 25.0%
! TTCTCTTTACTTAAGTTTGT+AGG + chr6.2:18890417-18890436 MS.gene55601:intron 25.0%
!! AATCTTAAGCTTTTCCATTT+GGG - chr6.2:18891966-18891985 None:intergenic 25.0%
!!! AGTAGCATTTTGAAAATAGA+AGG + chr6.2:18890583-18890602 MS.gene55601:intron 25.0%
AAAAATGTGTCATGTAGTGT+AGG - chr6.2:18890996-18891015 None:intergenic 30.0%
ACTCCAAGAAAGTCAAAAAA+TGG - chr6.2:18892112-18892131 None:intergenic 30.0%
AGGTAAAGAAGACAAATCAA+AGG - chr6.2:18890532-18890551 None:intergenic 30.0%
CAAAAGAGAACCTTTAAGTA+AGG + chr6.2:18891319-18891338 MS.gene55601:CDS 30.0%
CCTTTACCTAGTTATCAAAT+GGG + chr6.2:18891581-18891600 MS.gene55601:CDS 30.0%
TGAGTTTGAATCTGAATGAT+TGG - chr6.2:18891999-18892018 None:intergenic 30.0%
TGATGAGTGAGATATCATTT+GGG - chr6.2:18890361-18890380 None:intergenic 30.0%
TTGAATCTGAATGATTGGAT+TGG - chr6.2:18891994-18892013 None:intergenic 30.0%
TTGAGATTGGATTCATCAAT+GGG - chr6.2:18891551-18891570 None:intergenic 30.0%
TTGATGAGTGAGATATCATT+TGG - chr6.2:18890362-18890381 None:intergenic 30.0%
! AAAACAATGGAGGGAATTTT+AGG + chr6.2:18890842-18890861 MS.gene55601:CDS 30.0%
! AGTATACCCATTTGATAACT+AGG - chr6.2:18891590-18891609 None:intergenic 30.0%
! ATGAACAGTGGATCAATTTT+GGG + chr6.2:18892052-18892071 MS.gene55601:CDS 30.0%
! CAAAAGCACAAATTAAAACG+AGG - chr6.2:18890467-18890486 None:intergenic 30.0%
! CAATCTTAAGCTTTTCCATT+TGG - chr6.2:18891967-18891986 None:intergenic 30.0%
!! TTGTGATAATGGTTATTGCA+GGG + chr6.2:18891252-18891271 MS.gene55601:intron 30.0%
!! TTTGTGATAATGGTTATTGC+AGG + chr6.2:18891251-18891270 MS.gene55601:intron 30.0%
!!! ATGCCATTTTTTGACTTTCT+TGG + chr6.2:18892106-18892125 MS.gene55601:CDS 30.0%
!!! TTTTTTGACTTTCTTGGAGT+AGG + chr6.2:18892112-18892131 MS.gene55601:CDS 30.0%
AAAAGTCCAAAACACCCTTT+GGG + chr6.2:18890776-18890795 MS.gene55601:CDS 35.0%
AAACAACTTATCGCTGATCA+TGG + chr6.2:18890916-18890935 MS.gene55601:CDS 35.0%
AACATTGCTGAACAACTAGA+AGG + chr6.2:18890955-18890974 MS.gene55601:CDS 35.0%
ACCTTTAAGTAAGGAAGAAG+AGG + chr6.2:18891328-18891347 MS.gene55601:CDS 35.0%
ATACACTTCATGGTACCAAA+TGG + chr6.2:18891369-18891388 MS.gene55601:CDS 35.0%
ATTATCATGTGATCAAGGCT+AGG + chr6.2:18891444-18891463 MS.gene55601:CDS 35.0%
CAGGGAAAAGTTGTAGATTA+AGG + chr6.2:18891270-18891289 MS.gene55601:intron 35.0%
CATTCAGATTCAAACTCAGA+AGG + chr6.2:18892001-18892020 MS.gene55601:CDS 35.0%
GCCTTTACCTAGTTATCAAA+TGG + chr6.2:18891580-18891599 MS.gene55601:CDS 35.0%
GGAAAAGTTGTAGATTAAGG+TGG + chr6.2:18891273-18891292 MS.gene55601:CDS 35.0%
GTTGAGATTGGATTCATCAA+TGG - chr6.2:18891552-18891571 None:intergenic 35.0%
GTTTAACAATGTGTCCCAAA+TGG + chr6.2:18891949-18891968 MS.gene55601:CDS 35.0%
TACACTTCATGGTACCAAAT+GGG + chr6.2:18891370-18891389 MS.gene55601:CDS 35.0%
TCCTCTTCTTCCTTACTTAA+AGG - chr6.2:18891332-18891351 None:intergenic 35.0%
TGAGATTGGATTCATCAATG+GGG - chr6.2:18891550-18891569 None:intergenic 35.0%
TGCAATTATTGTTGTAGTGG+CGG - chr6.2:18891657-18891676 None:intergenic 35.0%
TTAAGCTTAGCATCTTCAGA+TGG - chr6.2:18890898-18890917 None:intergenic 35.0%
! AAAGGTTCTCTTTTGATGCT+AGG - chr6.2:18891314-18891333 None:intergenic 35.0%
! ATGATGTAAGTTGAGATGGA+AGG - chr6.2:18890711-18890730 None:intergenic 35.0%
! CATGAACAGTGGATCAATTT+TGG + chr6.2:18892051-18892070 MS.gene55601:CDS 35.0%
! CCCATTTGATAACTAGGTAA+AGG - chr6.2:18891584-18891603 None:intergenic 35.0%
! CTGATCATGGTGCTAAAAAT+TGG + chr6.2:18890929-18890948 MS.gene55601:CDS 35.0%
! GATGATGATGTAAGTTGAGA+TGG - chr6.2:18890715-18890734 None:intergenic 35.0%
! TGAACAGTGGATCAATTTTG+GGG + chr6.2:18892053-18892072 MS.gene55601:CDS 35.0%
! TGATGTAAGTTGAGATGGAA+GGG - chr6.2:18890710-18890729 None:intergenic 35.0%
! TTGTGATGGCAAATTTTGCT+GGG - chr6.2:18891526-18891545 None:intergenic 35.0%
! TTTTTGACCATGCTCTCATT+AGG - chr6.2:18890826-18890845 None:intergenic 35.0%
AATCCAATCTCAACCTCACT+AGG + chr6.2:18891558-18891577 MS.gene55601:CDS 40.0%
AGATGGTTTCCAATGAGCTT+TGG - chr6.2:18890881-18890900 None:intergenic 40.0%
AGCATGGTCAAAAACAATGG+AGG + chr6.2:18890832-18890851 MS.gene55601:CDS 40.0%
GAAAAGTCCAAAACACCCTT+TGG + chr6.2:18890775-18890794 MS.gene55601:CDS 40.0%
GAACAACTAGAAGGAAGAAC+AGG + chr6.2:18890964-18890983 MS.gene55601:CDS 40.0%
GCATGGTCAAAAACAATGGA+GGG + chr6.2:18890833-18890852 MS.gene55601:CDS 40.0%
TTGCAGCTTCATACACTTCA+TGG + chr6.2:18891359-18891378 MS.gene55601:CDS 40.0%
TTTCATAGCACTGCAAGCTT+TGG - chr6.2:18891927-18891946 None:intergenic 40.0%
TTTGCAAATGTGTGCCCATT+TGG - chr6.2:18891387-18891406 None:intergenic 40.0%
! CTTGTGATGGCAAATTTTGC+TGG - chr6.2:18891527-18891546 None:intergenic 40.0%
! GAACAGTGGATCAATTTTGG+GGG + chr6.2:18892054-18892073 MS.gene55601:CDS 40.0%
! GAGAGCATGGTCAAAAACAA+TGG + chr6.2:18890829-18890848 MS.gene55601:CDS 40.0%
AACTAGGTAAAGGCCTAGTG+AGG - chr6.2:18891574-18891593 None:intergenic 45.0%
AGTGCATTATCTGTCCTTCC+AGG - chr6.2:18891416-18891435 None:intergenic 45.0%
ATCATCTTCTACTCCCCTTC+AGG + chr6.2:18890729-18890748 MS.gene55601:intron 45.0%
ATCATGTGATCAAGGCTAGG+AGG + chr6.2:18891447-18891466 MS.gene55601:CDS 45.0%
CACATTTGCAAACACTTCCC+TGG + chr6.2:18891395-18891414 MS.gene55601:CDS 45.0%
CTAAGCCTTCCAAAGCTCAT+TGG + chr6.2:18890869-18890888 MS.gene55601:CDS 45.0%
GATCCAACCTAATGAGAGCA+TGG + chr6.2:18890816-18890835 MS.gene55601:CDS 45.0%
GCTGCAACAAACATGAACAG+TGG + chr6.2:18892040-18892059 MS.gene55601:CDS 45.0%
GTGCATTATCTGTCCTTCCA+GGG - chr6.2:18891415-18891434 None:intergenic 45.0%
GTTACCAACATGACCCTGAA+GGG - chr6.2:18890746-18890765 None:intergenic 45.0%
TCATCTTCTACTCCCCTTCA+GGG + chr6.2:18890730-18890749 MS.gene55601:intron 45.0%
TGACCATGCTCTCATTAGGT+TGG - chr6.2:18890822-18890841 None:intergenic 45.0%
TGTTACCAACATGACCCTGA+AGG - chr6.2:18890747-18890766 None:intergenic 45.0%
TTACCAACATGACCCTGAAG+GGG - chr6.2:18890745-18890764 None:intergenic 45.0%
TTCATCAATGGGGCTTGTGA+TGG - chr6.2:18891540-18891559 None:intergenic 45.0%
TTGGGGGATGGTCAAAATGT+GGG + chr6.2:18892070-18892089 MS.gene55601:CDS 45.0%
TTTGCAAACACTTCCCTGGA+AGG + chr6.2:18891399-18891418 MS.gene55601:CDS 45.0%
TTTGGGGGATGGTCAAAATG+TGG + chr6.2:18892069-18892088 MS.gene55601:CDS 45.0%
!! AGTGGATCAATTTTGGGGGA+TGG + chr6.2:18892058-18892077 MS.gene55601:CDS 45.0%
!! CTCTCATTAGGTTGGATCAC+CGG - chr6.2:18890814-18890833 None:intergenic 45.0%
!! GGGTCATGTTGGTAACAATG+AGG + chr6.2:18890750-18890769 MS.gene55601:intron 45.0%
!! GGTTTCCAATGAGCTTTGGA+AGG - chr6.2:18890877-18890896 None:intergenic 45.0%
!!! CGAAATCCCAAAGGGTGTTT+TGG - chr6.2:18890785-18890804 None:intergenic 45.0%
AGGCCTAGTGAGGTTGAGAT+TGG - chr6.2:18891564-18891583 None:intergenic 50.0%
GATCAAGGCTAGGAGGCAAA+GGG + chr6.2:18891454-18891473 MS.gene55601:CDS 50.0%
GGAGGGTTCGAAATCCCAAA+GGG - chr6.2:18890793-18890812 None:intergenic 50.0%
TGATCAAGGCTAGGAGGCAA+AGG + chr6.2:18891453-18891472 MS.gene55601:CDS 50.0%
!! CATTAGGTTGGATCACCGGA+GGG - chr6.2:18890810-18890829 None:intergenic 50.0%
!! CTTTGGGATTTCGAACCCTC+CGG + chr6.2:18890792-18890811 MS.gene55601:CDS 50.0%
!! TCATTAGGTTGGATCACCGG+AGG - chr6.2:18890811-18890830 None:intergenic 50.0%
ACTCCCCTTCAGGGTCATGT+TGG + chr6.2:18890739-18890758 MS.gene55601:intron 55.0%
CGGAGGGTTCGAAATCCCAA+AGG - chr6.2:18890794-18890813 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 18890339 18892144 18890339 ID=MS.gene55601
chr6.2 mRNA 18890339 18892144 18890339 ID=MS.gene55601.t1;Parent=MS.gene55601
chr6.2 exon 18890339 18890383 18890339 ID=MS.gene55601.t1.exon1;Parent=MS.gene55601.t1
chr6.2 CDS 18890339 18890383 18890339 ID=cds.MS.gene55601.t1;Parent=MS.gene55601.t1
chr6.2 exon 18890751 18890985 18890751 ID=MS.gene55601.t1.exon2;Parent=MS.gene55601.t1
chr6.2 CDS 18890751 18890985 18890751 ID=cds.MS.gene55601.t1;Parent=MS.gene55601.t1
chr6.2 exon 18891273 18891602 18891273 ID=MS.gene55601.t1.exon3;Parent=MS.gene55601.t1
chr6.2 CDS 18891273 18891602 18891273 ID=cds.MS.gene55601.t1;Parent=MS.gene55601.t1
chr6.2 exon 18891888 18892144 18891888 ID=MS.gene55601.t1.exon4;Parent=MS.gene55601.t1
chr6.2 CDS 18891888 18892144 18891888 ID=cds.MS.gene55601.t1;Parent=MS.gene55601.t1
Gene Sequence

>MS.gene55601

ATGTGGGCTTTACTCTCATCCCAAATGATATCTCACTCATCAAGAGTAAACAAACTCTTTGTTTTATTTGCTCCATTTTTCTCTTTACTTAAGTTTGTAGGAAATGAGAATAACTAAATAATTCACCTCGTTTTAATTTGTGCTTTTGCTTTTTTTTTTAAATGTTGTCTTTCTTCTCTTATTCATGTATCCTTTGATTTGTCTTCTTTACCTTCTTTTTTACTTGCTTATTTTCTTCACTACTAGTAGCATTTTGAAAATAGAAGGAAAAAAAAATCATTTTTCTAAAGTTAAAGCTTTTCTTTTTATCGCGAGTTCACTAAACTTGAAAAATGATGGTTATGGTTTCTCTTTAGACTTGAAAATTTCCCTTCCATCTCAACTTACATCATCATCTTCTACTCCCCTTCAGGGTCATGTTGGTAACAATGAGGCTGAAAAGTCCAAAACACCCTTTGGGATTTCGAACCCTCCGGTGATCCAACCTAATGAGAGCATGGTCAAAAACAATGGAGGGAATTTTAGGAACACTAAGCCTTCCAAAGCTCATTGGAAACCATCTGAAGATGCTAAGCTTAAACAACTTATCGCTGATCATGGTGCTAAAAATTGGAACAACATTGCTGAACAACTAGAAGGAAGAACAGGTTTGATCCTACACTACATGACACATTTTTATTTATTAAATTTTAAAAAATTTACTAATTTATTTTTTAACGAAATGGTTTTTTTAATATTGTTAATAATTAATTTTTAATTTAATTTTTTTTACAAAAATAAGTATTTAAAAAATTGAACATTTTCAAGAAGTACGTTTAGTATTTTTATTAAAATTGCATAAGTATTTTATTTTGATTAGACATTTCTTTAATGTCGATATTTATTTGTAATTTAACATTTAGTTTTTTTTTTTTTGTGATAATGGTTATTGCAGGGAAAAGTTGTAGATTAAGGTGGCTTAATCAGCTAGATCCTAGCATCAAAAGAGAACCTTTAAGTAAGGAAGAAGAGGAGATGCTTTTGCAGCTTCATACACTTCATGGTACCAAATGGGCACACATTTGCAAACACTTCCCTGGAAGGACAGATAATGCACTGAAAAATCATTATCATGTGATCAAGGCTAGGAGGCAAAGGGAACTACTATCATCTATTGCAAAAAAGGAAAAGCTAACATATGAAATCCCAGCAAAATTTGCCATCACAAGCCCCATTGATGAATCCAATCTCAACCTCACTAGGCCTTTACCTAGTTATCAAATGGGTATACTTTGAATCCTTTATTTTATCTTATCAAACAATTTTAAATATTGGTCCGCCACTACAACAATAATTGCAATAACAAATTTTCTTATGTCTTTGCAACATCGATTGAAGTTGCATCAACCTCATTTAACAATGATTTTCATTTAAACCTTTAAATTGCTTGAAAAATTTGTTATTTTCTCTCTTGTTTTAGTTTATATTAAATATCATATGTTAATTTACTTGACATATGATATATTTATGACCATGTTGTTGTTTTTTTTTTATTGTGCTATATTTTTAGGTTTACTTGAAAAAAGAATGGTAGAAGTTGAATTTGCCAAAGCTTGCAGTGCTATGAAAGAGTTTAACAATGTGTCCCAAATGGAAAAGCTTAAGATTGCAGACCAATCCAATCATTCAGATTCAAACTCAGAAGGTTCATCATCTGAGTCAGCTGCAACAAACATGAACAGTGGATCAATTTTGGGGGATGGTCAAAATGTGGGAGATAAGATTAAGATGCCATTTTTTGACTTTCTTGGAGTAGGTGATACATAG
Protein sequence

>MS.gene55601.t1

MWALLSSQMISHSSRGHVGNNEAEKSKTPFGISNPPVIQPNESMVKNNGGNFRNTKPSKAHWKPSEDAKLKQLIADHGAKNWNNIAEQLEGRTGKSCRLRWLNQLDPSIKREPLSKEEEEMLLQLHTLHGTKWAHICKHFPGRTDNALKNHYHVIKARRQRELLSSIAKKEKLTYEIPAKFAITSPIDESNLNLTRPLPSYQMGLLEKRMVEVEFAKACSAMKEFNNVSQMEKLKIADQSNHSDSNSEGSSSESAATNMNSGSILGDGQNVGDKIKMPFFDFLGVGDT