AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55604

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55604.t1 MTR_6g027360 82.305 243 21 2 1 239 1 225 1.11e-136 386
MS.gene55604.t1 MTR_6g027340 89.375 160 17 0 77 236 1 160 1.90e-102 296
MS.gene55604.t1 MTR_6g027370 54.804 281 67 8 1 239 1 263 1.99e-85 258
MS.gene55604.t1 MTR_5g041570 50.355 141 67 2 73 213 117 254 3.13e-43 151
MS.gene55604.t1 MTR_4g082040 57.895 114 48 0 90 203 103 216 6.53e-43 150
MS.gene55604.t1 MTR_3g089045 64.423 104 37 0 92 195 16 119 1.30e-42 146
MS.gene55604.t1 MTR_6g074860 55.752 113 50 0 90 202 2 114 1.86e-42 144
MS.gene55604.t1 MTR_7g086960 55.462 119 53 0 91 209 88 206 6.36e-39 138
MS.gene55604.t1 MTR_4g019370 51.579 95 46 0 92 186 38 132 6.17e-31 117
MS.gene55604.t1 MTR_3g463400 50.000 100 50 0 90 189 131 230 1.22e-28 112
MS.gene55604.t1 MTR_5g082910 34.783 138 90 0 80 217 7 144 4.05e-28 108
MS.gene55604.t1 MTR_3g101290 46.316 95 51 0 92 186 37 131 2.51e-27 104
MS.gene55604.t1 MTR_5g016510 45.263 95 52 0 92 186 5 99 4.47e-27 106
MS.gene55604.t1 MTR_5g070020 49.000 100 51 0 90 189 120 219 2.12e-26 105
MS.gene55604.t1 MTR_5g049190 44.348 115 59 2 83 195 8 119 6.28e-26 101
MS.gene55604.t1 MTR_6g015455 45.833 96 52 0 92 187 5 100 1.52e-25 105
MS.gene55604.t1 MTR_4g094982 44.211 95 53 0 92 186 5 99 2.44e-25 100
MS.gene55604.t1 MTR_7g061330 49.000 100 51 0 87 186 108 207 2.60e-25 103
MS.gene55604.t1 MTR_7g461410 49.000 100 51 0 87 186 108 207 2.60e-25 103
MS.gene55604.t1 MTR_7g061330 49.000 100 51 0 87 186 72 171 2.83e-25 103
MS.gene55604.t1 MTR_3g077650 38.462 143 85 1 92 234 181 320 4.93e-25 102
MS.gene55604.t1 MTR_5g010020 47.475 99 49 2 89 185 11 108 5.82e-25 100
MS.gene55604.t1 MTR_4g105660 46.154 104 56 0 86 189 174 277 5.89e-25 102
MS.gene55604.t1 MTR_1g100667 50.000 100 47 2 89 186 12 110 5.90e-25 99.8
MS.gene55604.t1 MTR_1g026870 44.348 115 61 1 87 201 80 191 8.72e-25 102
MS.gene55604.t1 MTR_4g100720 45.714 105 54 2 90 191 13 117 2.35e-24 95.9
MS.gene55604.t1 MTR_8g098860 45.455 99 51 2 89 185 11 108 3.01e-24 99.0
MS.gene55604.t1 MTR_2g064160 46.465 99 50 2 89 185 10 107 4.09e-24 98.2
MS.gene55604.t1 MTR_6g055910 46.602 103 52 2 86 186 10 111 4.52e-24 97.8
MS.gene55604.t1 MTR_7g037260 39.344 122 73 1 69 189 121 242 4.96e-24 99.0
MS.gene55604.t1 MTR_3g110028 43.478 115 62 1 87 201 80 191 5.84e-24 100
MS.gene55604.t1 MTR_1g085040 43.119 109 59 2 89 195 11 118 2.81e-23 97.1
MS.gene55604.t1 MTR_1g112760 47.000 100 50 2 89 186 12 110 5.36e-23 93.6
MS.gene55604.t1 MTR_2g089420 36.025 161 89 4 87 234 8 167 6.96e-23 96.7
MS.gene55604.t1 MTR_7g451170 42.857 98 56 0 92 189 191 288 7.49e-23 96.3
MS.gene55604.t1 MTR_1g110460 41.935 124 69 2 82 202 18 141 7.93e-23 94.7
MS.gene55604.t1 MTR_4g065017 41.964 112 62 2 87 196 14 124 9.07e-23 95.1
MS.gene55604.t1 MTR_2g097910 39.823 113 67 1 90 201 20 132 9.63e-23 94.7
MS.gene55604.t1 MTR_2g099740 43.750 112 57 3 89 198 11 118 1.04e-22 95.5
MS.gene55604.t1 MTR_7g450950 36.800 125 79 0 78 202 143 267 1.30e-22 94.7
MS.gene55604.t1 MTR_3g074520 50.000 98 46 2 90 185 12 108 1.32e-22 94.7
MS.gene55604.t1 MTR_4g088015 40.000 105 63 0 85 189 214 318 1.41e-22 95.5
MS.gene55604.t1 MTR_2g089450 46.000 100 51 2 90 187 12 110 1.81e-22 92.8
MS.gene55604.t1 MTR_8g017440 45.455 99 51 2 89 185 11 108 3.01e-22 93.6
MS.gene55604.t1 MTR_7g111290 47.423 97 48 2 89 183 11 106 3.13e-22 94.0
MS.gene55604.t1 MTR_7g035350 33.735 166 92 3 86 233 219 384 3.53e-22 94.7
MS.gene55604.t1 MTR_2g011660 46.154 104 53 2 86 187 9 111 6.46e-22 92.8
MS.gene55604.t1 MTR_5g042030 42.718 103 58 1 86 187 3 105 7.78e-22 91.7
MS.gene55604.t1 MTR_8g017540 38.060 134 68 3 89 220 57 177 1.02e-21 92.8
MS.gene55604.t1 MTR_1g085640 42.202 109 60 2 89 195 11 118 1.11e-21 92.8
MS.gene55604.t1 MTR_0008s0390 43.000 100 54 2 90 187 13 111 1.12e-21 90.9
MS.gene55604.t1 MTR_3g077110 46.000 100 51 2 89 186 11 109 1.16e-21 92.0
MS.gene55604.t1 MTR_5g029840 42.424 99 56 1 90 187 12 110 1.17e-21 92.0
MS.gene55604.t1 MTR_1g100653 43.519 108 56 3 90 193 12 118 1.31e-21 91.3
MS.gene55604.t1 MTR_0008s0470 34.058 138 73 3 90 210 13 149 1.39e-21 91.3
MS.gene55604.t1 MTR_7g035075 39.286 112 67 1 77 187 1 112 1.67e-21 89.0
MS.gene55604.t1 MTR_7g110830 41.284 109 61 2 89 195 11 118 2.15e-21 91.7
MS.gene55604.t1 MTR_5g010650 43.000 100 57 0 87 186 105 204 2.34e-21 92.4
MS.gene55604.t1 MTR_8g020490 43.878 98 54 1 89 185 7 104 3.05e-21 89.4
MS.gene55604.t1 MTR_1g086530 40.741 108 59 3 90 193 33 139 3.12e-21 89.7
MS.gene55604.t1 MTR_8g042410 40.517 116 66 2 84 197 31 145 3.29e-21 92.0
MS.gene55604.t1 MTR_3g011610 40.000 120 68 3 81 197 27 145 3.55e-21 92.0
MS.gene55604.t1 MTR_1g086510 41.667 120 66 3 78 193 8 127 4.09e-21 89.4
MS.gene55604.t1 MTR_7g037130 35.526 152 91 3 40 189 96 242 6.18e-21 90.1
MS.gene55604.t1 MTR_3g052450 40.367 109 64 1 90 197 40 148 6.96e-21 91.3
MS.gene55604.t1 MTR_2g089620 46.018 113 56 3 90 200 12 121 7.29e-21 89.7
MS.gene55604.t1 MTR_0251s0050 42.000 100 55 2 90 187 13 111 7.51e-21 88.6
MS.gene55604.t1 MTR_4g091490 45.192 104 54 2 86 187 9 111 8.60e-21 89.7
MS.gene55604.t1 MTR_5g007370 47.000 100 50 2 90 187 12 110 8.80e-21 89.0
MS.gene55604.t1 MTR_4g105130 44.000 100 53 2 89 186 11 109 9.12e-21 89.7
MS.gene55604.t1 MTR_1g062940 43.000 100 54 2 90 187 6 104 9.49e-21 87.4
MS.gene55604.t1 MTR_3g028740 42.056 107 59 2 88 192 20 125 1.06e-20 89.4
MS.gene55604.t1 MTR_6g006030 43.269 104 56 2 84 185 8 110 1.17e-20 87.0
MS.gene55604.t1 MTR_1g057980 42.157 102 59 0 90 191 78 179 1.18e-20 88.6
MS.gene55604.t1 MTR_3g461490 43.000 100 54 2 90 187 12 110 1.22e-20 89.0
MS.gene55604.t1 MTR_8g017500 44.330 97 51 2 89 183 11 106 1.32e-20 89.4
MS.gene55604.t1 MTR_4g073420 43.878 98 52 2 92 187 14 110 1.42e-20 88.2
MS.gene55604.t1 MTR_5g079670 45.455 99 51 2 90 186 11 108 1.52e-20 86.7
MS.gene55604.t1 MTR_8g017350 42.857 112 59 2 89 198 11 119 1.53e-20 90.5
MS.gene55604.t1 MTR_3g052430 40.367 109 64 1 90 197 41 149 1.55e-20 90.1
MS.gene55604.t1 MTR_0063s0090 38.583 127 70 3 90 209 12 137 1.82e-20 86.7
MS.gene55604.t1 MTR_6g012690 46.000 100 51 2 90 187 12 110 2.11e-20 89.0
MS.gene55604.t1 MTR_8g017340 41.964 112 60 2 89 198 11 119 3.58e-20 89.0
MS.gene55604.t1 MTR_4g125520 39.815 108 64 1 90 196 12 119 3.90e-20 87.4
MS.gene55604.t1 MTR_8g017390 41.071 112 61 2 89 198 11 119 4.30e-20 89.0
MS.gene55604.t1 MTR_7g115650 45.000 100 52 2 90 187 12 110 6.08e-20 85.1
MS.gene55604.t1 MTR_4g063100 40.187 107 60 3 92 195 9 114 6.27e-20 85.9
MS.gene55604.t1 MTR_1g076150 44.000 100 53 2 90 187 12 110 7.10e-20 85.9
MS.gene55604.t1 MTR_6g009430 38.614 101 61 1 88 187 10 110 9.12e-20 86.7
MS.gene55604.t1 MTR_0008s0280 39.423 104 60 2 85 186 7 109 1.02e-19 84.7
MS.gene55604.t1 MTR_8g027345 36.522 115 70 2 90 201 12 126 1.11e-19 85.9
MS.gene55604.t1 MTR_4g478180 46.000 100 51 2 90 187 13 111 1.29e-19 86.7
MS.gene55604.t1 MTR_8g031360 44.554 101 52 3 90 187 13 112 1.43e-19 85.9
MS.gene55604.t1 MTR_0247s0040 42.268 97 55 1 90 185 7 103 1.44e-19 83.2
MS.gene55604.t1 MTR_8g095390 39.175 97 58 1 92 187 14 110 1.60e-19 85.9
MS.gene55604.t1 MTR_2g067420 41.176 102 57 2 88 187 12 112 1.61e-19 85.9
MS.gene55604.t1 MTR_7g076740 41.818 110 60 3 90 196 12 120 1.78e-19 85.5
MS.gene55604.t1 MTR_3g065440 46.000 100 51 2 90 187 12 110 1.83e-19 85.5
MS.gene55604.t1 MTR_1g045610 41.837 98 54 2 92 187 23 119 2.36e-19 84.3
MS.gene55604.t1 MTR_1g073170 36.522 115 68 3 77 187 5 118 2.76e-19 84.3
MS.gene55604.t1 MTR_7g011170 42.424 99 56 1 90 187 12 110 3.68e-19 84.7
MS.gene55604.t1 MTR_5g078140 46.000 100 51 2 90 187 12 110 3.86e-19 84.7
MS.gene55604.t1 MTR_6g012180 33.094 139 89 2 90 227 12 147 5.92e-19 84.3
MS.gene55604.t1 MTR_4g082230 41.584 101 58 1 88 187 10 110 7.67e-19 84.7
MS.gene55604.t1 MTR_5g079290 40.404 99 58 1 90 187 17 115 8.37e-19 83.2
MS.gene55604.t1 MTR_0001s0360 40.404 99 58 1 90 187 7 105 8.39e-19 82.8
MS.gene55604.t1 MTR_3g103570 40.000 100 58 2 90 187 12 111 9.18e-19 84.0
MS.gene55604.t1 MTR_5g078860 41.414 99 57 1 90 187 7 105 9.25e-19 83.6
MS.gene55604.t1 MTR_7g010210 40.404 99 58 1 90 187 12 110 9.92e-19 84.0
MS.gene55604.t1 MTR_1g083630 35.593 118 74 2 78 194 1 117 1.03e-18 85.1
MS.gene55604.t1 MTR_7g010210 40.404 99 58 1 90 187 12 110 1.08e-18 82.8
MS.gene55604.t1 MTR_8g006470 36.364 143 69 5 90 214 10 148 1.10e-18 83.2
MS.gene55604.t1 MTR_5g078800 40.404 99 58 1 90 187 7 105 1.12e-18 82.8
MS.gene55604.t1 MTR_2g096380 39.604 101 58 2 89 187 5 104 1.27e-18 82.0
MS.gene55604.t1 MTR_7g117730 38.384 99 60 1 90 187 12 110 1.32e-18 82.4
MS.gene55604.t1 MTR_2g034790 40.816 98 57 1 90 186 12 109 1.41e-18 83.6
MS.gene55604.t1 MTR_1g043080 43.000 100 54 2 90 187 12 110 1.43e-18 82.4
MS.gene55604.t1 MTR_3g097450 40.404 99 56 2 91 187 13 110 1.44e-18 82.8
MS.gene55604.t1 MTR_8g060940 38.739 111 61 2 78 187 1 105 1.45e-18 82.0
MS.gene55604.t1 MTR_4g121460 41.414 99 55 2 90 186 12 109 1.58e-18 83.6
MS.gene55604.t1 MTR_1g043050 43.000 100 54 2 90 187 12 110 1.59e-18 82.0
MS.gene55604.t1 MTR_5g079220 39.394 99 59 1 90 187 21 119 1.74e-18 82.4
MS.gene55604.t1 MTR_3g083540 39.394 99 59 1 90 187 41 139 2.02e-18 82.8
MS.gene55604.t1 MTR_5g078910 40.404 99 58 1 90 187 7 105 2.77e-18 82.4
MS.gene55604.t1 MTR_7g096930 36.538 156 89 4 90 236 12 166 4.46e-18 81.3
MS.gene55604.t1 MTR_4g082290 44.000 100 53 2 90 187 12 110 5.31e-18 82.4
MS.gene55604.t1 MTR_1g017000 33.884 121 75 3 89 207 11 128 7.34e-18 80.1
MS.gene55604.t1 MTR_4g485530 40.625 96 56 1 91 185 13 108 8.01e-18 79.0
MS.gene55604.t1 MTR_7g061550 34.211 114 72 1 92 202 7 120 8.89e-18 81.6
MS.gene55604.t1 MTR_4g102380 42.000 100 55 2 90 187 12 110 1.01e-17 80.1
MS.gene55604.t1 MTR_5g014990 37.288 118 68 3 90 205 12 125 1.80e-17 80.1
MS.gene55604.t1 MTR_0193s0090 39.394 99 59 1 90 187 7 105 1.80e-17 78.2
MS.gene55604.t1 MTR_5g062790 35.246 122 75 3 92 210 11 131 1.83e-17 80.1
MS.gene55604.t1 MTR_4g097570 36.364 121 70 3 90 203 12 132 1.90e-17 79.7
MS.gene55604.t1 MTR_5g088610 33.884 121 78 2 92 210 11 131 2.07e-17 80.5
MS.gene55604.t1 MTR_5g078950 37.864 103 62 2 87 187 3 105 2.22e-17 79.3
MS.gene55604.t1 MTR_6g055910 53.226 62 29 0 125 186 21 82 2.54e-17 79.0
MS.gene55604.t1 MTR_2g095520 40.000 100 58 2 90 187 12 111 2.56e-17 79.7
MS.gene55604.t1 MTR_2g088170 41.964 112 62 2 88 197 27 137 2.62e-17 80.9
MS.gene55604.t1 MTR_5g079120 35.897 117 72 2 90 205 61 175 2.87e-17 79.3
MS.gene55604.t1 MTR_7g087130 40.404 99 58 1 90 187 12 110 3.09e-17 79.7
MS.gene55604.t1 MTR_7g017260 38.053 113 63 3 90 195 25 137 3.30e-17 79.0
MS.gene55604.t1 MTR_3g039990 39.394 99 59 1 90 187 13 111 4.38e-17 79.0
MS.gene55604.t1 MTR_2g033170 32.624 141 90 2 65 204 3 139 5.44e-17 79.0
MS.gene55604.t1 MTR_4g029540 37.391 115 66 3 90 202 10 120 5.45e-17 78.6
MS.gene55604.t1 MTR_0140s0030 39.394 99 59 1 90 187 13 111 6.08e-17 79.0
MS.gene55604.t1 MTR_0489s0020 39.394 99 59 1 90 187 13 111 6.08e-17 79.0
MS.gene55604.t1 MTR_4g057635 39.216 102 60 2 88 187 10 111 6.16e-17 79.0
MS.gene55604.t1 MTR_1g021230 38.318 107 63 2 90 194 57 162 7.01e-17 79.3
MS.gene55604.t1 MTR_6g090405 39.216 102 60 2 88 187 10 111 7.85e-17 77.4
MS.gene55604.t1 MTR_1g017140 39.000 100 59 2 90 187 12 111 1.03e-16 78.2
MS.gene55604.t1 MTR_0197s0010 42.105 95 52 2 95 187 6 99 1.71e-16 76.3
MS.gene55604.t1 MTR_4g097570 35.833 120 71 3 90 203 12 131 1.77e-16 77.0
MS.gene55604.t1 MTR_5g038910 33.333 114 74 1 95 208 29 140 1.88e-16 78.2
MS.gene55604.t1 MTR_5g488170 35.714 112 64 4 88 196 10 116 2.02e-16 76.3
MS.gene55604.t1 MTR_8g468380 32.110 109 74 0 95 203 25 133 2.27e-16 77.8
MS.gene55604.t1 MTR_5g088080 35.714 112 64 4 88 196 10 116 2.55e-16 76.3
MS.gene55604.t1 MTR_5g088150 35.714 112 64 4 88 196 10 116 2.55e-16 76.3
MS.gene55604.t1 MTR_5g488210 35.714 112 64 4 88 196 10 116 2.55e-16 76.3
MS.gene55604.t1 MTR_5g038910 33.333 114 74 1 95 208 29 140 2.60e-16 77.4
MS.gene55604.t1 MTR_5g088640 35.714 112 64 4 88 196 10 116 2.80e-16 76.3
MS.gene55604.t1 MTR_5g078930 32.609 138 83 2 92 219 11 148 3.90e-16 75.1
MS.gene55604.t1 MTR_4g123040 37.069 116 72 1 90 204 24 139 9.97e-16 75.5
MS.gene55604.t1 MTR_7g102110 38.000 100 60 2 90 187 12 111 2.42e-15 73.6
MS.gene55604.t1 MTR_4g063100 43.056 72 40 1 125 195 14 85 2.48e-15 72.8
MS.gene55604.t1 MTR_4g128670 37.000 100 61 2 90 187 12 111 4.39e-15 73.9
MS.gene55604.t1 MTR_7g111290 50.847 59 29 0 125 183 6 64 1.09e-14 72.4
MS.gene55604.t1 MTR_2g096380 45.902 61 33 0 125 185 23 83 3.42e-14 69.7
MS.gene55604.t1 MTR_3g045430 30.097 103 71 1 86 187 9 111 7.17e-14 69.7
MS.gene55604.t1 MTR_7g109320 40.404 99 56 2 90 186 12 109 3.23e-13 68.6
MS.gene55604.t1 MTR_5g007300 44.156 77 42 1 90 165 64 140 5.98e-13 64.7
MS.gene55604.t1 MTR_1g008970 46.154 65 35 0 118 182 117 181 2.93e-12 64.7
MS.gene55604.t1 MTR_7g035300 46.774 62 32 1 128 189 101 161 1.80e-11 62.4
MS.gene55604.t1 MTR_6g080360 30.303 99 68 1 87 185 474 571 6.04e-11 62.4
MS.gene55604.t1 MTR_6g080360 30.303 99 68 1 87 185 254 351 7.84e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55604.t1 AT4G33450 59.167 120 47 1 84 201 9 128 2.05e-45 152
MS.gene55604.t1 AT1G69560 52.632 133 63 0 75 207 90 222 1.34e-44 152
MS.gene55604.t1 AT1G69560 52.632 133 63 0 75 207 106 238 1.69e-44 152
MS.gene55604.t1 AT1G26780 55.469 128 56 1 90 217 96 222 6.20e-43 147
MS.gene55604.t1 AT1G26780 55.469 128 56 1 90 217 96 222 3.81e-42 147
MS.gene55604.t1 AT1G17950 58.491 106 44 0 90 195 3 108 2.65e-41 142
MS.gene55604.t1 AT5G17800 54.472 123 55 1 74 195 74 196 1.74e-38 136
MS.gene55604.t1 AT3G29020 53.509 114 53 0 90 203 63 176 2.03e-38 134
MS.gene55604.t1 AT3G29020 53.509 114 53 0 90 203 65 178 1.57e-37 133
MS.gene55604.t1 AT1G73410 58.095 105 44 0 91 195 5 109 7.70e-37 129
MS.gene55604.t1 AT1G73410 58.095 105 44 0 91 195 5 109 1.09e-36 129
MS.gene55604.t1 AT4G37260 46.535 101 54 0 86 186 7 107 6.29e-28 108
MS.gene55604.t1 AT2G39880 44.167 120 56 1 92 211 50 158 2.02e-27 108
MS.gene55604.t1 AT5G67300 46.316 95 51 0 92 186 6 100 3.28e-27 106
MS.gene55604.t1 AT3G55730 50.526 95 47 0 92 186 56 150 6.17e-27 107
MS.gene55604.t1 AT3G09230 37.931 145 77 2 92 235 55 187 6.85e-27 107
MS.gene55604.t1 AT5G58850 45.946 111 60 0 79 189 92 202 3.85e-26 105
MS.gene55604.t1 AT5G11050 48.980 98 50 0 92 189 105 202 5.34e-26 105
MS.gene55604.t1 AT5G39700 45.536 112 53 1 93 204 57 160 7.89e-26 100
MS.gene55604.t1 AT2G23290 46.316 95 51 0 92 186 13 107 1.28e-25 102
MS.gene55604.t1 AT5G40360 43.000 100 57 0 90 189 156 255 2.22e-25 102
MS.gene55604.t1 AT1G63910 48.485 99 48 2 89 185 11 108 6.43e-25 101
MS.gene55604.t1 AT3G50060 43.158 95 54 0 92 186 6 100 7.16e-25 100
MS.gene55604.t1 AT5G02320 47.000 100 53 0 87 186 122 221 1.32e-24 102
MS.gene55604.t1 AT5G02320 47.000 100 53 0 87 186 122 221 1.32e-24 102
MS.gene55604.t1 AT5G02320 47.000 100 53 0 87 186 62 161 1.51e-24 101
MS.gene55604.t1 AT5G11510 46.000 100 54 0 87 186 76 175 1.51e-24 102
MS.gene55604.t1 AT5G11510 46.000 100 54 0 87 186 76 175 1.51e-24 102
MS.gene55604.t1 AT5G11510 46.000 100 54 0 87 186 76 175 1.51e-24 102
MS.gene55604.t1 AT5G11510 46.000 100 54 0 87 186 76 175 2.06e-24 101
MS.gene55604.t1 AT5G11510 46.000 100 54 0 87 186 76 175 2.09e-24 101
MS.gene55604.t1 AT3G53200 43.396 106 57 2 90 193 9 113 2.53e-24 97.4
MS.gene55604.t1 AT3G27785 46.939 98 52 0 92 189 189 286 2.63e-24 100
MS.gene55604.t1 AT4G18770 45.192 104 57 0 86 189 211 314 3.59e-24 100
MS.gene55604.t1 AT4G01680 34.641 153 86 3 89 239 11 151 4.31e-24 96.7
MS.gene55604.t1 AT3G12720 45.000 100 52 2 89 186 21 119 1.09e-23 97.1
MS.gene55604.t1 AT5G65230 50.980 102 47 2 88 187 10 110 1.17e-23 97.1
MS.gene55604.t1 AT4G01680 34.641 153 86 3 89 239 11 151 1.20e-23 97.4
MS.gene55604.t1 AT4G25560 48.454 97 47 2 92 186 12 107 1.54e-23 96.3
MS.gene55604.t1 AT2G25230 37.615 109 68 0 85 193 19 127 2.14e-23 94.7
MS.gene55604.t1 AT3G09370 46.000 100 54 0 87 186 130 229 3.54e-23 97.8
MS.gene55604.t1 AT1G57560 36.552 145 74 3 89 216 11 154 3.58e-23 95.1
MS.gene55604.t1 AT3G09370 46.000 100 54 0 87 186 125 224 3.62e-23 97.8
MS.gene55604.t1 AT3G09370 46.000 100 54 0 87 186 138 237 3.78e-23 97.8
MS.gene55604.t1 AT5G07700 47.475 99 51 1 90 187 12 110 6.17e-23 95.5
MS.gene55604.t1 AT5G07700 47.475 99 51 1 90 187 12 110 6.17e-23 95.5
MS.gene55604.t1 AT5G06100 38.583 127 72 2 74 194 11 137 6.74e-23 96.7
MS.gene55604.t1 AT5G06100 38.583 127 72 2 74 194 11 137 8.32e-23 96.7
MS.gene55604.t1 AT5G06100 38.583 127 72 2 74 194 11 137 8.32e-23 96.7
MS.gene55604.t1 AT5G06100 38.583 127 72 2 74 194 11 137 8.32e-23 96.7
MS.gene55604.t1 AT5G06100 38.583 127 72 2 74 194 11 137 8.32e-23 96.7
MS.gene55604.t1 AT3G48920 45.545 101 50 2 89 186 17 115 1.13e-22 93.6
MS.gene55604.t1 AT5G54230 46.465 99 52 1 90 187 12 110 1.21e-22 94.4
MS.gene55604.t1 AT5G14750 41.509 106 61 1 83 187 9 114 1.25e-22 92.0
MS.gene55604.t1 AT3G01140 47.000 100 50 2 90 187 12 110 1.53e-22 94.7
MS.gene55604.t1 AT5G61420 46.465 99 52 1 90 187 12 110 1.58e-22 94.7
MS.gene55604.t1 AT4G05100 48.000 100 49 2 90 187 13 111 1.87e-22 94.0
MS.gene55604.t1 AT3G30210 40.984 122 63 4 92 205 29 149 2.03e-22 93.2
MS.gene55604.t1 AT3G01140 47.000 100 50 2 90 187 55 153 2.34e-22 94.7
MS.gene55604.t1 AT3G11440 38.938 113 68 1 86 197 37 149 2.45e-22 95.5
MS.gene55604.t1 AT3G11440 38.938 113 68 1 86 197 37 149 2.45e-22 95.5
MS.gene55604.t1 AT3G11440 38.938 113 68 1 86 197 37 149 2.45e-22 95.5
MS.gene55604.t1 AT3G11440 38.938 113 68 1 86 197 37 149 2.60e-22 95.1
MS.gene55604.t1 AT5G26660 37.143 140 84 3 89 225 11 149 2.67e-22 94.0
MS.gene55604.t1 AT1G57560 46.392 97 49 2 89 183 11 106 2.75e-22 93.6
MS.gene55604.t1 AT1G09540 44.545 110 56 3 89 194 11 119 2.83e-22 94.0
MS.gene55604.t1 AT4G17785 46.000 100 51 2 90 187 13 111 3.00e-22 94.0
MS.gene55604.t1 AT4G17785 46.000 100 51 2 90 187 13 111 3.29e-22 94.0
MS.gene55604.t1 AT5G12870 39.091 110 64 2 89 196 17 125 3.77e-22 92.4
MS.gene55604.t1 AT4G00540 41.228 114 64 1 90 200 101 214 5.31e-22 94.0
MS.gene55604.t1 AT4G01680 32.121 165 86 3 89 239 11 163 6.26e-22 92.8
MS.gene55604.t1 AT5G15310 45.455 99 53 1 90 187 12 110 6.43e-22 92.4
MS.gene55604.t1 AT5G15310 45.455 99 53 1 90 187 12 110 6.78e-22 92.4
MS.gene55604.t1 AT5G15310 46.392 97 51 1 90 185 12 108 6.98e-22 90.9
MS.gene55604.t1 AT4G00540 41.228 114 64 1 90 200 99 212 8.17e-22 93.6
MS.gene55604.t1 AT5G07690 45.455 99 53 1 90 187 12 110 9.40e-22 92.4
MS.gene55604.t1 AT4G28110 45.455 99 53 1 90 187 12 110 1.14e-21 91.3
MS.gene55604.t1 AT1G74430 45.192 104 54 2 85 186 7 109 1.29e-21 90.9
MS.gene55604.t1 AT5G60890 44.444 99 54 1 90 187 12 110 1.44e-21 91.3
MS.gene55604.t1 AT2G47190 37.391 115 71 1 87 200 17 131 1.54e-21 90.5
MS.gene55604.t1 AT4G26930 38.532 109 66 1 90 197 19 127 1.77e-21 92.0
MS.gene55604.t1 AT1G18570 44.444 99 54 1 90 187 13 111 1.79e-21 91.7
MS.gene55604.t1 AT2G26950 36.364 121 71 3 77 194 1 118 1.84e-21 92.0
MS.gene55604.t1 AT3G08500 41.509 106 61 1 82 186 22 127 1.91e-21 91.7
MS.gene55604.t1 AT5G10280 44.660 103 54 2 87 187 9 110 1.92e-21 91.3
MS.gene55604.t1 AT5G40330 35.821 134 85 1 92 224 14 147 2.00e-21 89.4
MS.gene55604.t1 AT3G27920 39.216 102 61 1 87 187 11 112 2.20e-21 89.4
MS.gene55604.t1 AT3G13890 41.071 112 60 3 89 198 11 118 2.52e-21 91.3
MS.gene55604.t1 AT4G32730 42.000 100 58 0 87 186 82 181 2.56e-21 92.8
MS.gene55604.t1 AT4G32730 42.000 100 58 0 87 186 82 181 2.56e-21 92.8
MS.gene55604.t1 AT4G32730 42.000 100 58 0 87 186 82 181 2.56e-21 92.8
MS.gene55604.t1 AT4G32730 42.000 100 58 0 87 186 82 181 2.56e-21 92.8
MS.gene55604.t1 AT4G32730 42.000 100 58 0 87 186 82 181 2.65e-21 92.8
MS.gene55604.t1 AT1G18710 43.689 103 55 2 85 185 7 108 2.70e-21 89.7
MS.gene55604.t1 AT3G02940 45.455 99 53 1 90 187 12 110 2.80e-21 90.5
MS.gene55604.t1 AT3G01530 44.898 98 51 2 90 185 25 121 3.47e-21 88.2
MS.gene55604.t1 AT3G02940 45.455 99 53 1 90 187 12 110 3.50e-21 90.5
MS.gene55604.t1 AT3G02940 45.455 99 53 1 90 187 12 110 3.50e-21 90.5
MS.gene55604.t1 AT3G27810 36.842 133 81 2 89 218 19 151 3.71e-21 88.6
MS.gene55604.t1 AT3G61250 46.875 96 48 2 90 183 12 106 4.70e-21 89.7
MS.gene55604.t1 AT5G35550 42.308 104 59 1 84 186 8 111 5.02e-21 89.0
MS.gene55604.t1 AT3G23250 44.000 100 53 2 90 187 12 110 5.42e-21 89.4
MS.gene55604.t1 AT5G40350 42.000 100 57 1 87 185 14 113 6.37e-21 87.8
MS.gene55604.t1 AT4G21440 48.958 96 46 2 90 183 12 106 9.10e-21 89.7
MS.gene55604.t1 AT5G52600 39.394 99 59 1 90 187 12 110 1.31e-20 86.7
MS.gene55604.t1 AT1G48000 41.837 98 56 1 89 185 31 128 1.46e-20 87.4
MS.gene55604.t1 AT3G53200 52.174 69 33 0 125 193 12 80 1.84e-20 86.3
MS.gene55604.t1 AT3G13890 37.500 120 62 3 89 198 11 127 3.24e-20 88.6
MS.gene55604.t1 AT1G79180 44.118 102 54 2 88 187 12 112 3.40e-20 87.4
MS.gene55604.t1 AT1G22640 43.000 100 54 2 90 187 12 110 3.60e-20 86.7
MS.gene55604.t1 AT4G38620 42.857 98 53 2 92 187 14 110 3.92e-20 87.0
MS.gene55604.t1 AT1G66230 45.370 108 54 3 90 193 12 118 4.26e-20 87.0
MS.gene55604.t1 AT5G16770 44.444 99 54 1 90 187 12 110 4.54e-20 87.4
MS.gene55604.t1 AT5G16770 44.444 99 54 1 90 187 12 110 4.54e-20 87.4
MS.gene55604.t1 AT1G74080 41.748 103 59 1 86 187 8 110 5.17e-20 87.4
MS.gene55604.t1 AT5G16770 44.444 99 54 1 90 187 12 110 5.29e-20 87.4
MS.gene55604.t1 AT5G16770 44.444 99 54 1 90 187 12 110 5.29e-20 87.4
MS.gene55604.t1 AT2G32460 40.187 107 61 2 90 194 18 123 5.64e-20 88.6
MS.gene55604.t1 AT1G68320 40.000 110 63 2 89 196 18 126 5.70e-20 86.7
MS.gene55604.t1 AT5G52260 49.485 97 46 2 92 186 14 109 6.62e-20 86.3
MS.gene55604.t1 AT2G32460 40.187 107 61 2 90 194 6 111 6.74e-20 88.2
MS.gene55604.t1 AT4G34990 43.434 99 53 2 91 187 13 110 7.41e-20 86.3
MS.gene55604.t1 AT1G34670 45.455 99 53 1 90 187 12 110 7.86e-20 87.4
MS.gene55604.t1 AT1G35515 39.394 99 59 1 90 187 12 110 1.68e-19 84.0
MS.gene55604.t1 AT1G25340 42.991 107 58 2 92 196 20 125 1.83e-19 85.1
MS.gene55604.t1 AT5G56110 41.837 98 54 2 90 185 12 108 1.88e-19 85.9
MS.gene55604.t1 AT5G55020 38.384 99 60 1 90 187 26 124 2.05e-19 87.0
MS.gene55604.t1 AT3G12820 41.837 98 54 2 88 183 12 108 2.07e-19 84.3
MS.gene55604.t1 AT2G16720 39.823 113 58 4 90 198 12 118 2.13e-19 84.7
MS.gene55604.t1 AT1G25340 41.905 105 57 1 92 196 20 120 2.62e-19 84.7
MS.gene55604.t1 AT3G28470 38.614 101 61 1 88 187 10 110 2.83e-19 85.1
MS.gene55604.t1 AT1G25340 41.905 105 57 1 92 196 20 120 3.97e-19 84.7
MS.gene55604.t1 AT1G56160 44.330 97 51 2 89 183 13 108 4.14e-19 84.3
MS.gene55604.t1 AT5G40430 33.051 118 78 1 85 202 47 163 4.89e-19 83.6
MS.gene55604.t1 AT4G13480 42.708 96 52 2 92 185 8 102 6.04e-19 83.6
MS.gene55604.t1 AT4G09460 40.367 109 59 3 92 198 14 118 6.15e-19 82.8
MS.gene55604.t1 AT3G24310 42.708 96 52 2 92 185 20 114 8.54e-19 83.2
MS.gene55604.t1 AT3G60460 39.823 113 62 3 86 196 7 115 9.20e-19 83.6
MS.gene55604.t1 AT5G49330 39.796 98 58 1 90 186 12 109 1.01e-18 84.0
MS.gene55604.t1 AT1G16490 43.137 102 55 2 88 187 12 112 1.21e-18 82.8
MS.gene55604.t1 AT3G13540 38.384 99 60 1 90 187 23 121 1.31e-18 82.4
MS.gene55604.t1 AT5G14340 39.450 109 63 2 90 196 24 131 1.56e-18 82.4
MS.gene55604.t1 AT4G12350 44.000 100 53 2 90 187 12 110 2.11e-18 82.4
MS.gene55604.t1 AT2G26960 37.736 106 65 1 90 194 20 125 2.13e-18 84.0
MS.gene55604.t1 AT5G16600 44.444 108 55 3 90 193 12 118 2.24e-18 82.8
MS.gene55604.t1 AT5G23000 40.385 104 56 3 88 187 10 111 3.31e-18 82.4
MS.gene55604.t1 AT1G06180 44.000 100 53 2 90 187 12 110 3.68e-18 80.9
MS.gene55604.t1 AT5G59780 37.963 108 62 3 92 195 10 116 4.04e-18 80.9
MS.gene55604.t1 AT3G46130 38.889 108 61 3 92 195 11 117 6.40e-18 80.5
MS.gene55604.t1 AT5G62470 38.776 98 60 0 90 187 12 109 6.59e-18 82.0
MS.gene55604.t1 AT3G47600 40.404 99 58 1 90 187 12 110 8.40e-18 81.3
MS.gene55604.t1 AT4G22680 44.000 100 53 2 90 187 12 110 1.27e-17 80.1
MS.gene55604.t1 AT1G66370 40.741 108 61 2 90 194 8 115 3.26e-17 78.6
MS.gene55604.t1 AT1G08810 40.404 99 58 1 90 187 12 110 3.39e-17 79.0
MS.gene55604.t1 AT2G47460 33.871 124 77 2 90 212 12 131 4.30e-17 79.7
MS.gene55604.t1 AT2G02820 39.000 100 61 0 95 194 33 132 4.61e-17 79.3
MS.gene55604.t1 AT1G74650 40.000 100 59 1 89 187 11 110 4.86e-17 79.3
MS.gene55604.t1 AT2G02820 39.000 100 61 0 95 194 33 132 5.01e-17 80.1
MS.gene55604.t1 AT2G02820 39.000 100 61 0 95 194 33 132 5.35e-17 79.7
MS.gene55604.t1 AT3G28910 39.394 99 59 1 90 187 12 110 8.86e-17 78.6
MS.gene55604.t1 AT5G49620 41.414 99 57 1 90 187 26 124 9.38e-17 78.2
MS.gene55604.t1 AT5G65790 37.607 117 67 3 90 204 12 124 9.54e-17 78.6
MS.gene55604.t1 AT3G49690 38.462 117 66 3 90 204 12 124 1.06e-16 78.2
MS.gene55604.t1 AT1G56650 38.028 142 81 3 90 230 8 143 1.39e-16 76.6
MS.gene55604.t1 AT3G27810 38.542 96 57 1 125 218 7 102 1.76e-16 75.1
MS.gene55604.t1 AT5G57620 40.000 100 58 2 90 187 12 111 1.83e-16 77.8
MS.gene55604.t1 AT5G62470 38.384 99 60 1 90 187 12 110 1.85e-16 77.8
MS.gene55604.t1 AT5G14750 47.619 63 33 0 125 187 18 80 2.05e-16 74.7
MS.gene55604.t1 AT3G06490 38.053 113 67 2 90 200 19 130 2.24e-16 77.4
MS.gene55604.t1 AT2G31180 40.000 100 57 2 90 187 12 110 2.49e-16 76.3
MS.gene55604.t1 AT2G37630 32.374 139 77 2 92 227 4 128 4.47e-16 76.6
MS.gene55604.t1 AT3G62610 36.735 98 61 1 90 186 12 109 4.54e-16 76.6
MS.gene55604.t1 AT1G79180 33.582 134 55 2 88 187 12 145 6.21e-16 75.9
MS.gene55604.t1 AT5G40350 49.180 61 31 0 125 185 8 68 7.45e-16 73.2
MS.gene55604.t1 AT5G59780 42.466 73 40 1 125 195 23 95 1.71e-15 73.2
MS.gene55604.t1 AT3G12820 54.237 59 27 0 125 183 2 60 1.84e-15 72.8
MS.gene55604.t1 AT5G35550 53.226 62 29 0 125 186 53 114 1.85e-15 73.9
MS.gene55604.t1 AT1G14350 37.000 100 63 0 95 194 28 127 2.35e-15 75.1
MS.gene55604.t1 AT1G14350 37.000 100 63 0 95 194 28 127 2.35e-15 75.1
MS.gene55604.t1 AT3G46130 42.466 73 40 1 125 195 23 95 3.06e-15 72.8
MS.gene55604.t1 AT3G46130 42.466 73 40 1 125 195 13 85 3.16e-15 72.8
MS.gene55604.t1 AT1G66380 42.424 99 56 1 90 187 8 106 6.01e-15 70.1
MS.gene55604.t1 AT5G26660 39.080 87 52 1 125 210 17 103 6.35e-15 73.2
MS.gene55604.t1 AT5G62320 37.383 107 57 3 90 187 13 118 3.39e-14 70.1
MS.gene55604.t1 AT4G37780 35.000 100 63 2 90 187 12 111 4.64e-14 70.5
MS.gene55604.t1 AT2G36890 33.333 114 71 3 90 201 12 122 7.58e-14 69.7
MS.gene55604.t1 AT2G36890 33.333 114 71 3 90 201 53 163 1.04e-13 69.7
MS.gene55604.t1 AT5G49620 33.333 126 69 2 90 200 26 151 3.13e-13 68.2
MS.gene55604.t1 AT1G66390 42.424 99 56 1 90 187 8 106 4.87e-13 67.0
MS.gene55604.t1 AT3G47600 47.619 63 33 0 125 187 42 104 6.94e-13 67.4
MS.gene55604.t1 AT5G14750 43.396 53 30 0 135 187 1 53 9.87e-11 58.5
MS.gene55604.t1 AT5G14750 43.396 53 30 0 135 187 1 53 9.87e-11 58.5

Find 61 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTTCTTCCTTGCTTAA+AGG 0.108654 6.2:-18958038 None:intergenic
CGAAATCCCAAAGGGTATTT+TGG 0.153156 6.2:-18957429 None:intergenic
TGAAATCCCAAAGGGTATTT+TGG 0.182755 6.2:-18957483 None:intergenic
CAGGGAAAATTTGTATATTA+AGG 0.200707 6.2:+18957979 MS.gene55604:intron
TAAAACTCCCTCCATTGTTT+TGG 0.284956 6.2:-18957541 None:intergenic
CGATGGTTATGGTTTGTCTT+TGG 0.290848 6.2:+18957331 MS.gene55604:CDS
TTGCAGCTTCATACACTTGA+TGG 0.320666 6.2:+18958068 MS.gene55604:CDS
ATCATCTTCTACTCGCCTTC+AGG 0.339703 6.2:+18957376 MS.gene55604:CDS
AGTGCATTGTCTGTCCTTCC+AGG 0.354573 6.2:-18958122 None:intergenic
GAAAAGTCCAAAATACCCTT+TGG 0.364674 6.2:+18957422 MS.gene55604:CDS
GAAAAGTCCAAAATACCCTT+TGG 0.364674 6.2:+18957476 MS.gene55604:CDS
GCCTTTACCTAGTTCTCAAA+TGG 0.365011 6.2:+18958289 MS.gene55604:CDS
CTAAGCTTTCCAAAGCTCAT+TGG 0.367547 6.2:+18957570 MS.gene55604:CDS
AGATGGTTTCCAATGAGCTT+TGG 0.375191 6.2:-18957579 None:intergenic
AGGCCTAGTGCGGTTGAGAT+TGG 0.392134 6.2:-18958270 None:intergenic
AAAAGTCCAAAATACCCTTT+GGG 0.401475 6.2:+18957423 MS.gene55604:CDS
AAAAGTCCAAAATACCCTTT+GGG 0.401475 6.2:+18957477 MS.gene55604:CDS
GGACCATGCTCTCATTTGGT+TGG 0.416818 6.2:-18957520 None:intergenic
CAGGGTCATGTTGGTAGCAA+TGG 0.421255 6.2:+18957395 MS.gene55604:CDS
CTGACCATGGTGCTAAAGAT+TGG 0.421499 6.2:+18957630 MS.gene55604:CDS
ATACACTTGATGGTAACAAA+TGG 0.426759 6.2:+18958078 MS.gene55604:CDS
TTGAGATTGGATTCATCAAT+GGG 0.430960 6.2:-18958257 None:intergenic
AACTTGAACAACGATGGTTA+TGG 0.435261 6.2:+18957320 MS.gene55604:CDS
ACTATCATCTATTGCAAGAA+AGG 0.451301 6.2:+18958190 MS.gene55604:CDS
AGTATACCCATTTGAGAACT+AGG 0.466439 6.2:-18958296 None:intergenic
GTTGAGATTGGATTCATCAA+TGG 0.470439 6.2:-18958258 None:intergenic
CCTTTACCTAGTTCTCAAAT+GGG 0.473333 6.2:+18958290 MS.gene55604:CDS
GCCTGCTAGCCTTGATCACA+TGG 0.491072 6.2:-18958157 None:intergenic
CATTTGGTTGGATCACTAGA+GGG 0.494505 6.2:-18957508 None:intergenic
TACACTTGATGGTAACAAAT+GGG 0.494686 6.2:+18958079 MS.gene55604:CDS
TCATCTTCTACTCGCCTTCA+GGG 0.495680 6.2:+18957377 MS.gene55604:CDS
GAATCATTTCCATGTGATCA+AGG 0.499044 6.2:+18958148 MS.gene55604:CDS
TCCATGTGATCAAGGCTAGC+AGG 0.512712 6.2:+18958156 MS.gene55604:CDS
AATCCAATCTCAACCGCACT+AGG 0.519569 6.2:+18958267 MS.gene55604:CDS
TCATTTGGTTGGATCACTAG+AGG 0.520143 6.2:-18957509 None:intergenic
CCCTTTGGGATTTCGAGTCA+TGG 0.522094 6.2:+18957437 MS.gene55604:CDS
GGAAAATTTGTATATTAAGG+TGG 0.523199 6.2:+18957982 MS.gene55604:CDS
ACCTTTAAGCAAGGAAGAAG+AGG 0.525896 6.2:+18958037 MS.gene55604:CDS
CCCATTTGAGAACTAGGTAA+AGG 0.544335 6.2:-18958290 None:intergenic
TGATCAAGGCTAGCAGGCAA+AGG 0.550472 6.2:+18958162 MS.gene55604:CDS
GATCAAGGCTAGCAGGCAAA+GGG 0.563871 6.2:+18958163 MS.gene55604:CDS
AGAGGGTTTGAAATCCCAAA+GGG 0.579843 6.2:-18957491 None:intergenic
TGAAGCTTATCATCTTCAGA+TGG 0.581839 6.2:-18957596 None:intergenic
GAGAGCATGGTCCAAAACAA+TGG 0.582977 6.2:+18957530 MS.gene55604:CDS
ACTCGCCTTCAGGGTCATGT+TGG 0.585722 6.2:+18957386 MS.gene55604:CDS
AGGCGAGTAGAAGATGATGA+TGG 0.586415 6.2:-18957371 None:intergenic
CAAAAGAGAACCTTTAAGCA+AGG 0.587994 6.2:+18958028 MS.gene55604:CDS
TTCATCAATGGGGCTTGTGA+TGG 0.589265 6.2:-18958246 None:intergenic
CCATGACTCGAAATCCCAAA+GGG 0.598055 6.2:-18957437 None:intergenic
TCATTAAACTTGAACAACGA+TGG 0.604369 6.2:+18957314 MS.gene55604:CDS
GCATGGTCCAAAACAATGGA+GGG 0.615733 6.2:+18957534 MS.gene55604:CDS
GATCCAACCAAATGAGAGCA+TGG 0.615775 6.2:+18957517 MS.gene55604:CDS
AGCATGGTCCAAAACAATGG+AGG 0.619235 6.2:+18957533 MS.gene55604:CDS
TGCTACCAACATGACCCTGA+AGG 0.622727 6.2:-18957391 None:intergenic
TGTTCCAATCTTTAGCACCA+TGG 0.629779 6.2:-18957634 None:intergenic
TTTGGGATTTCGAGTCATGG+TGG 0.646091 6.2:+18957440 MS.gene55604:CDS
ACCATGACTCGAAATCCCAA+AGG 0.646290 6.2:-18957438 None:intergenic
TAGAGGGTTTGAAATCCCAA+AGG 0.655576 6.2:-18957492 None:intergenic
CAACAACTTATCGCTGACCA+TGG 0.661584 6.2:+18957617 MS.gene55604:CDS
AACTAGGTAAAGGCCTAGTG+CGG 0.675780 6.2:-18958280 None:intergenic
TGAGATTGGATTCATCAATG+GGG 0.712534 6.2:-18958256 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATAAATAAATTTTTTGTT+AGG - chr6.2:18957706-18957725 None:intergenic 10.0%
!! CAATATTAAAAAAAACAACT+TGG - chr6.2:18957762-18957781 None:intergenic 15.0%
!!! GTTTTTTTTTTTTGTGATAA+TGG + chr6.2:18957950-18957969 MS.gene55604:intron 15.0%
! CAGGGAAAATTTGTATATTA+AGG + chr6.2:18957979-18957998 MS.gene55604:intron 25.0%
! GGAAAATTTGTATATTAAGG+TGG + chr6.2:18957982-18958001 MS.gene55604:CDS 25.0%
!!! AAAAACTGAACATTTTCAAG+CGG + chr6.2:18957831-18957850 MS.gene55604:intron 25.0%
!!! AAATTTTTTGTTAGGTAGTG+TGG - chr6.2:18957698-18957717 None:intergenic 25.0%
AAAAGTCCAAAATACCCTTT+GGG + chr6.2:18957423-18957442 MS.gene55604:CDS 30.0%
AACATTGCTGAAAAACTACA+AGG + chr6.2:18957656-18957675 MS.gene55604:CDS 30.0%
ACTATCATCTATTGCAAGAA+AGG + chr6.2:18958190-18958209 MS.gene55604:CDS 30.0%
TCATTAAACTTGAACAACGA+TGG + chr6.2:18957314-18957333 MS.gene55604:CDS 30.0%
TTGAGATTGGATTCATCAAT+GGG - chr6.2:18958260-18958279 None:intergenic 30.0%
! ATACACTTGATGGTAACAAA+TGG + chr6.2:18958078-18958097 MS.gene55604:CDS 30.0%
! TACACTTGATGGTAACAAAT+GGG + chr6.2:18958079-18958098 MS.gene55604:CDS 30.0%
!! TTGTGATAATGGTAATTGCA+GGG + chr6.2:18957961-18957980 MS.gene55604:intron 30.0%
!! TTTGTGATAATGGTAATTGC+AGG + chr6.2:18957960-18957979 MS.gene55604:intron 30.0%
AACTTGAACAACGATGGTTA+TGG + chr6.2:18957320-18957339 MS.gene55604:CDS 35.0%
AGTATACCCATTTGAGAACT+AGG - chr6.2:18958299-18958318 None:intergenic 35.0%
CAAAAGAGAACCTTTAAGCA+AGG + chr6.2:18958028-18958047 MS.gene55604:CDS 35.0%
GAAAAACTACAAGGAAGATC+AGG + chr6.2:18957665-18957684 MS.gene55604:CDS 35.0%
GAAAAGTCCAAAATACCCTT+TGG + chr6.2:18957422-18957441 MS.gene55604:CDS 35.0%
GAATCATTTCCATGTGATCA+AGG + chr6.2:18958148-18958167 MS.gene55604:CDS 35.0%
GTTGAGATTGGATTCATCAA+TGG - chr6.2:18958261-18958280 None:intergenic 35.0%
TGAAGCTTATCATCTTCAGA+TGG - chr6.2:18957599-18957618 None:intergenic 35.0%
TGAGATTGGATTCATCAATG+GGG - chr6.2:18958259-18958278 None:intergenic 35.0%
! AAAACAATGGAGGGAGTTTT+AGG + chr6.2:18957543-18957562 MS.gene55604:CDS 35.0%
! AAAGGTTCTCTTTTGATGCT+AGG - chr6.2:18958023-18958042 None:intergenic 35.0%
! CACATTTGCAAACATTTTCC+TGG + chr6.2:18958104-18958123 MS.gene55604:CDS 35.0%
! CCTTTACCTAGTTCTCAAAT+GGG + chr6.2:18958290-18958309 MS.gene55604:CDS 35.0%
! TAAAACTCCCTCCATTGTTT+TGG - chr6.2:18957544-18957563 None:intergenic 35.0%
! TTGTGATGGCAAATTTTGCT+GGG - chr6.2:18958235-18958254 None:intergenic 35.0%
! TTTGCAAACATTTTCCTGGA+AGG + chr6.2:18958108-18958127 MS.gene55604:CDS 35.0%
!!! TGAAATCCCAAAGGGTATTT+TGG - chr6.2:18957486-18957505 None:intergenic 35.0%
ACCTTTAAGCAAGGAAGAAG+AGG + chr6.2:18958037-18958056 MS.gene55604:CDS 40.0%
AGATGGTTTCCAATGAGCTT+TGG - chr6.2:18957582-18957601 None:intergenic 40.0%
CATTTGGTTGGATCACTAGA+GGG - chr6.2:18957511-18957530 None:intergenic 40.0%
CCCATTTGAGAACTAGGTAA+AGG - chr6.2:18958293-18958312 None:intergenic 40.0%
CTAAGCTTTCCAAAGCTCAT+TGG + chr6.2:18957570-18957589 MS.gene55604:CDS 40.0%
TCATTTGGTTGGATCACTAG+AGG - chr6.2:18957512-18957531 None:intergenic 40.0%
TCCTCTTCTTCCTTGCTTAA+AGG - chr6.2:18958041-18958060 None:intergenic 40.0%
TGTTCCAATCTTTAGCACCA+TGG - chr6.2:18957637-18957656 None:intergenic 40.0%
TTGCAGCTTCATACACTTGA+TGG + chr6.2:18958068-18958087 MS.gene55604:CDS 40.0%
! AGAGGGTTTGAAATCCCAAA+GGG - chr6.2:18957494-18957513 None:intergenic 40.0%
! CGATGGTTATGGTTTGTCTT+TGG + chr6.2:18957331-18957350 MS.gene55604:CDS 40.0%
! CTTGTGATGGCAAATTTTGC+TGG - chr6.2:18958236-18958255 None:intergenic 40.0%
! GCCTTTACCTAGTTCTCAAA+TGG + chr6.2:18958289-18958308 MS.gene55604:CDS 40.0%
! TAGAGGGTTTGAAATCCCAA+AGG - chr6.2:18957495-18957514 None:intergenic 40.0%
! TTTTGGACCATGCTCTCATT+TGG - chr6.2:18957527-18957546 None:intergenic 40.0%
!!! CGAAATCCCAAAGGGTATTT+TGG - chr6.2:18957432-18957451 None:intergenic 40.0%
AACTAGGTAAAGGCCTAGTG+CGG - chr6.2:18958283-18958302 None:intergenic 45.0%
AATCCAATCTCAACCGCACT+AGG + chr6.2:18958267-18958286 MS.gene55604:CDS 45.0%
ACCATGACTCGAAATCCCAA+AGG - chr6.2:18957441-18957460 None:intergenic 45.0%
AGCATGGTCCAAAACAATGG+AGG + chr6.2:18957533-18957552 MS.gene55604:CDS 45.0%
AGGCGAGTAGAAGATGATGA+TGG - chr6.2:18957374-18957393 None:intergenic 45.0%
ATCATCTTCTACTCGCCTTC+AGG + chr6.2:18957376-18957395 MS.gene55604:CDS 45.0%
CAACAACTTATCGCTGACCA+TGG + chr6.2:18957617-18957636 MS.gene55604:CDS 45.0%
CCATGACTCGAAATCCCAAA+GGG - chr6.2:18957440-18957459 None:intergenic 45.0%
GATCCAACCAAATGAGAGCA+TGG + chr6.2:18957517-18957536 MS.gene55604:CDS 45.0%
GCATGGTCCAAAACAATGGA+GGG + chr6.2:18957534-18957553 MS.gene55604:CDS 45.0%
TCATCTTCTACTCGCCTTCA+GGG + chr6.2:18957377-18957396 MS.gene55604:CDS 45.0%
TTCATCAATGGGGCTTGTGA+TGG - chr6.2:18958249-18958268 None:intergenic 45.0%
! CTGACCATGGTGCTAAAGAT+TGG + chr6.2:18957630-18957649 MS.gene55604:CDS 45.0%
! GAGAGCATGGTCCAAAACAA+TGG + chr6.2:18957530-18957549 MS.gene55604:CDS 45.0%
! TTTGGGATTTCGAGTCATGG+TGG + chr6.2:18957440-18957459 MS.gene55604:CDS 45.0%
AGTGCATTGTCTGTCCTTCC+AGG - chr6.2:18958125-18958144 None:intergenic 50.0%
GATCAAGGCTAGCAGGCAAA+GGG + chr6.2:18958163-18958182 MS.gene55604:CDS 50.0%
GGACCATGCTCTCATTTGGT+TGG - chr6.2:18957523-18957542 None:intergenic 50.0%
TCCATGTGATCAAGGCTAGC+AGG + chr6.2:18958156-18958175 MS.gene55604:CDS 50.0%
TGATCAAGGCTAGCAGGCAA+AGG + chr6.2:18958162-18958181 MS.gene55604:CDS 50.0%
TGCTACCAACATGACCCTGA+AGG - chr6.2:18957394-18957413 None:intergenic 50.0%
!! CAGGGTCATGTTGGTAGCAA+TGG + chr6.2:18957395-18957414 MS.gene55604:CDS 50.0%
!! CCCTTTGGGATTTCGAGTCA+TGG + chr6.2:18957437-18957456 MS.gene55604:CDS 50.0%
ACTCGCCTTCAGGGTCATGT+TGG + chr6.2:18957386-18957405 MS.gene55604:CDS 55.0%
AGGCCTAGTGCGGTTGAGAT+TGG - chr6.2:18958273-18958292 None:intergenic 55.0%
!! GCCTGCTAGCCTTGATCACA+TGG - chr6.2:18958160-18958179 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 18957308 18958322 18957308 ID=MS.gene55604
chr6.2 mRNA 18957308 18958322 18957308 ID=MS.gene55604.t1;Parent=MS.gene55604
chr6.2 exon 18957308 18957686 18957308 ID=MS.gene55604.t1.exon1;Parent=MS.gene55604.t1
chr6.2 CDS 18957308 18957686 18957308 ID=cds.MS.gene55604.t1;Parent=MS.gene55604.t1
chr6.2 exon 18957982 18958322 18957982 ID=MS.gene55604.t1.exon2;Parent=MS.gene55604.t1
chr6.2 CDS 18957982 18958322 18957982 ID=cds.MS.gene55604.t1;Parent=MS.gene55604.t1
Gene Sequence

>MS.gene55604

ATGAGTTCATTAAACTTGAACAACGATGGTTATGGTTTGTCTTTGGACTTGAAAATTTCTCTTCCATCATCATCTTCTACTCGCCTTCAGGGTCATGTTGGTAGCAATGGTTTTGAAAAGTCCAAAATACCCTTTGGGATTTCGAGTCATGGTGGAATCAATGAGTTTGAAAAGTCCAAAATACCCTTTGGGATTTCAAACCCTCTAGTGATCCAACCAAATGAGAGCATGGTCCAAAACAATGGAGGGAGTTTTAGGAACACTAAGCTTTCCAAAGCTCATTGGAAACCATCTGAAGATGATAAGCTTCAACAACTTATCGCTGACCATGGTGCTAAAGATTGGAACAACATTGCTGAAAAACTACAAGGAAGATCAGGTCTGATTCCACACTACCTAACAAAAAATTTATTTATCAAACTTTCAATAAGATTATTAATTTATTTTTTAACCAAGTTGTTTTTTTTAATATTGTTAATAATTTATTTTGAATTTATTTATTTTTTACAAAAATAAATATTCAAAAAACTGAACATTTTCAAGCGGTACACTTAGTATTTTCATTAAAATTGCATAAGTATTGTATTTTGATTATAAATTTCTTTAATTTCAATATTTATTTGTAATTTAACATTTAGTTTAGTTTTTTTTTTTTGTGATAATGGTAATTGCAGGGAAAATTTGTATATTAAGGTGGCTTAATCAACTAGATCCTAGCATCAAAAGAGAACCTTTAAGCAAGGAAGAAGAGGAGATGCTTTTGCAGCTTCATACACTTGATGGTAACAAATGGGCACACATTTGCAAACATTTTCCTGGAAGGACAGACAATGCACTAAAGAATCATTTCCATGTGATCAAGGCTAGCAGGCAAAGGGAACTACTATCATCTATTGCAAGAAAGGAAAAGCTAACATATGAAATCCCAGCAAAATTTGCCATCACAAGCCCCATTGATGAATCCAATCTCAACCGCACTAGGCCTTTACCTAGTTCTCAAATGGGTATACTTTGA
Protein sequence

>MS.gene55604.t1

MSSLNLNNDGYGLSLDLKISLPSSSSTRLQGHVGSNGFEKSKIPFGISSHGGINEFEKSKIPFGISNPLVIQPNESMVQNNGGSFRNTKLSKAHWKPSEDDKLQQLIADHGAKDWNNIAEKLQGRSGKICILRWLNQLDPSIKREPLSKEEEEMLLQLHTLDGNKWAHICKHFPGRTDNALKNHFHVIKASRQRELLSSIARKEKLTYEIPAKFAITSPIDESNLNRTRPLPSSQMGIL