AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55609

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55609.t1 MTR_6g027390 85.667 300 5 2 1 262 1 300 0.0 511
MS.gene55609.t1 MTR_7g086940 50.530 283 108 8 1 262 1 272 1.18e-73 226
MS.gene55609.t1 MTR_2g015000 62.500 72 27 0 24 95 47 118 2.45e-27 109
MS.gene55609.t1 MTR_7g025010 62.857 70 26 0 24 93 39 108 4.82e-27 109
MS.gene55609.t1 MTR_4g088080 55.556 81 33 1 12 89 17 97 3.66e-23 96.7
MS.gene55609.t1 MTR_4g088070 61.905 63 24 0 30 92 27 89 4.53e-23 97.4
MS.gene55609.t1 MTR_8g107210 43.333 90 50 1 11 99 75 164 3.19e-17 80.5
MS.gene55609.t1 MTR_4g084550 36.264 91 50 2 7 96 45 128 8.79e-16 73.6
MS.gene55609.t1 MTR_1g115315 46.875 64 34 0 28 91 81 144 4.94e-14 70.5
MS.gene55609.t1 MTR_1g115315 46.875 64 34 0 28 91 81 144 9.90e-14 69.7
MS.gene55609.t1 MTR_3g115620 45.070 71 39 0 28 98 78 148 1.92e-13 67.8
MS.gene55609.t1 MTR_5g081990 34.524 84 55 0 12 95 13 96 2.49e-12 64.3
MS.gene55609.t1 MTR_4g063735 40.299 67 40 0 32 98 25 91 3.63e-12 65.1
MS.gene55609.t1 MTR_5g021930 40.625 64 37 1 31 93 29 92 5.25e-12 65.1
MS.gene55609.t1 MTR_7g060630 40.625 64 38 0 31 94 7 70 7.99e-12 63.2
MS.gene55609.t1 MTR_1g019130 42.188 64 37 0 31 94 89 152 4.44e-11 61.6
MS.gene55609.t1 MTR_7g023810 41.538 65 38 0 29 93 65 129 5.61e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55609.t1 AT5G17810 49.821 279 94 7 13 259 3 267 1.06e-72 223
MS.gene55609.t1 AT5G17810 49.821 279 94 7 13 259 3 267 1.06e-72 223
MS.gene55609.t1 AT5G17810 49.821 279 93 7 13 259 3 266 1.53e-72 223
MS.gene55609.t1 AT3G03660 54.122 279 93 6 3 259 2 267 1.74e-72 223
MS.gene55609.t1 AT3G03660 54.348 276 91 6 3 256 2 264 1.35e-70 219
MS.gene55609.t1 AT3G03660 49.026 308 93 8 3 259 2 296 9.41e-67 209
MS.gene55609.t1 AT3G03660 49.180 305 91 8 3 256 2 293 5.80e-65 206
MS.gene55609.t1 AT2G33880 62.162 74 28 0 23 96 46 119 1.40e-27 109
MS.gene55609.t1 AT2G33880 62.162 74 28 0 23 96 46 119 1.64e-27 109
MS.gene55609.t1 AT5G45980 57.534 73 31 0 30 102 53 125 1.02e-25 103
MS.gene55609.t1 AT4G35550 47.692 65 34 0 28 92 95 159 2.30e-14 71.6
MS.gene55609.t1 AT3G18010 40.000 80 47 1 29 107 73 152 4.84e-14 71.2
MS.gene55609.t1 AT5G59340 39.706 68 41 0 31 98 13 80 5.48e-13 67.4
MS.gene55609.t1 AT1G20700 42.254 71 41 0 28 98 29 99 1.21e-12 64.3
MS.gene55609.t1 AT1G20700 42.254 71 41 0 28 98 91 161 2.54e-12 64.7
MS.gene55609.t1 AT1G20700 42.254 71 41 0 28 98 91 161 3.04e-12 64.3
MS.gene55609.t1 AT2G28610 38.889 72 44 0 26 97 2 73 3.05e-12 65.1
MS.gene55609.t1 AT2G17950 42.188 64 36 1 31 93 37 100 4.11e-12 65.5
MS.gene55609.t1 AT3G11260 39.062 64 39 0 32 95 24 87 6.97e-12 63.2
MS.gene55609.t1 AT1G46480 42.188 64 37 0 31 94 89 152 1.19e-11 62.4
MS.gene55609.t1 AT5G05770 37.500 64 40 0 32 95 29 92 5.12e-11 59.3
MS.gene55609.t1 AT1G46480 42.188 64 37 0 31 94 89 152 5.61e-11 61.6

Find 47 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAACTTCTTGAGAAATT+TGG 0.100600 6.2:-19083175 MS.gene55609:CDS
ATTCTCACGGTTTCATCTTT+TGG 0.207436 6.2:+19083199 None:intergenic
GACCATTCCACTATTGAAAA+TGG 0.216187 6.2:+19083228 None:intergenic
ATAAGGATTTGTTCAGGTTT+TGG 0.291953 6.2:+19083259 None:intergenic
TGAAAATGGATTCAAGTATA+AGG 0.302638 6.2:+19083242 None:intergenic
CTTGGTGCTGCACTTGGTCT+TGG 0.327659 6.2:-19082992 MS.gene55609:CDS
CTGCACTGGTATTGGTGATA+TGG 0.337777 6.2:+19083037 None:intergenic
CTGTCTCTTGGTGCTGCACT+TGG 0.345570 6.2:-19082998 MS.gene55609:CDS
GTAATATTGGTTCATTCCTC+TGG 0.359362 6.2:-19081108 MS.gene55609:CDS
TCAGTTCCAACCAATGAGTT+TGG 0.369989 6.2:-19081081 MS.gene55609:CDS
GTTTGGTGAAGATGTAATAT+TGG 0.373946 6.2:-19081121 MS.gene55609:CDS
TCAAATCAATTTGCCTCAAA+TGG 0.378394 6.2:-19082789 MS.gene55609:CDS
TGTTGGTGCTGCACTGGTAT+TGG 0.396373 6.2:+19083029 None:intergenic
TCAAGTATAAGGATTTGTTC+AGG 0.405750 6.2:+19083253 None:intergenic
CAGTACTGCCACCGCTTAGT+TGG 0.406811 6.2:+19083065 None:intergenic
GTACCTCTTGGCATTTCTGT+TGG 0.409908 6.2:+19081165 None:intergenic
AGTACTGCCACCGCTTAGTT+GGG 0.417375 6.2:+19083066 None:intergenic
GCATGGTGAAAGCTACTATC+TGG 0.420994 6.2:-19081037 MS.gene55609:intron
GCTGAAGTGTTGTCCATTTG+AGG 0.434913 6.2:+19082776 None:intergenic
CTTGAGAAATTTGGAGCTGT+TGG 0.435040 6.2:-19083166 MS.gene55609:CDS
GGTGCTGCACTTGGTCTTGG+TGG 0.436302 6.2:-19082989 MS.gene55609:CDS
ATTGACATGAAAACAATGTT+TGG 0.438397 6.2:-19081138 MS.gene55609:CDS
GTTGTTTGGATTATTAGTAT+TGG 0.439777 6.2:+19083318 None:intergenic
TCAAATTTCAACTATTACCC+AGG 0.481334 6.2:-19082719 MS.gene55609:intron
AACAGTACCTCTCTGTCTCT+TGG 0.490108 6.2:-19083010 MS.gene55609:CDS
CATCAAGAAACCAAACTCAT+TGG 0.493495 6.2:+19081071 None:intergenic
AAGAAACCAAACTCATTGGT+TGG 0.499044 6.2:+19081075 None:intergenic
GTGATCACAGTGTTTATCAA+TGG 0.505244 6.2:-19081192 MS.gene55609:CDS
ATGTCAATTGCAGTACCTCT+TGG 0.508431 6.2:+19081153 None:intergenic
AGGTACTGTTGGTGCTGCAC+TGG 0.511056 6.2:+19083023 None:intergenic
CGGCCTGCATCTGCCTCTGA+CGG 0.528621 6.2:+19083092 None:intergenic
ACGCCGTCAGAGGCAGATGC+AGG 0.544113 6.2:-19083095 MS.gene55609:CDS
AAATTTGAAGCATGATCAGA+AGG 0.576369 6.2:+19082734 None:intergenic
GCCGCCGCCCAACTAAGCGG+TGG 0.588442 6.2:-19083073 MS.gene55609:CDS
GTGAAACTGTGAGATCAAGA+TGG 0.590101 6.2:-19083285 MS.gene55609:CDS
CTCGCTCTAGACGCCGTCAG+AGG 0.591369 6.2:-19083105 MS.gene55609:CDS
ACTGCCACCGCTTAGTTGGG+CGG 0.608647 6.2:+19083069 None:intergenic
AGAATTCATAGTGAAAGTTG+AGG 0.624134 6.2:+19082964 None:intergenic
GCCACCGCTTAGTTGGGCGG+CGG 0.641411 6.2:+19083072 None:intergenic
CAGGCCGCCGCCCAACTAAG+CGG 0.643678 6.2:-19083076 MS.gene55609:CDS
TGCAGCACCAAGAGACAGAG+AGG 0.645908 6.2:+19083003 None:intergenic
AACTTTGAGACTGAACATGT+TGG 0.650519 6.2:+19083341 None:intergenic
AAGAGACAGAGAGGTACTGT+TGG 0.665242 6.2:+19083012 None:intergenic
TTGATGCAGAACTTGCAGCA+TGG 0.678300 6.2:-19081054 MS.gene55609:CDS
GACGGCGTCTAGAGCGAGAG+CGG 0.680232 6.2:+19083110 None:intergenic
GGTTGGAACTGAGACTCCAG+AGG 0.711041 6.2:+19081092 None:intergenic
GTTCCAACAGAAATGCCAAG+AGG 0.748646 6.2:-19081168 MS.gene55609:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTATATTAATTTTA+GGG - chr6.2:19082845-19082864 MS.gene55609:intron 0.0%
!!! TATTTATTTATATTAATTTT+AGG - chr6.2:19082844-19082863 MS.gene55609:intron 0.0%
!! GTTCATAAAAAAAAAATTAT+AGG + chr6.2:19081435-19081454 None:intergenic 10.0%
!!! AATATCATATTTTTTTGAAA+AGG + chr6.2:19081638-19081657 None:intergenic 10.0%
!!! ATATCATATTTTTTTGAAAA+GGG + chr6.2:19081637-19081656 None:intergenic 10.0%
!!! GTTTAGAAATTTTTAAATTA+AGG + chr6.2:19082128-19082147 None:intergenic 10.0%
!!! TACTTATAATAATAACTTTT+CGG - chr6.2:19081163-19081182 MS.gene55609:CDS 10.0%
!!! TTATTTATATTAATTTTAGG+GGG - chr6.2:19082847-19082866 MS.gene55609:intron 10.0%
!!! TTATTTCAAAAACTTTATTT+AGG + chr6.2:19083317-19083336 None:intergenic 10.0%
!! AGAACTTTCAAAAAAAAAAA+TGG + chr6.2:19081584-19081603 None:intergenic 15.0%
!! GAAAAATAAGTTAAAAAAGA+AGG + chr6.2:19082318-19082337 None:intergenic 15.0%
!!! AAATAAAACTATCCTTTTTT+TGG - chr6.2:19081900-19081919 MS.gene55609:intron 15.0%
!!! ACTTATAATAATAACTTTTC+GGG - chr6.2:19081164-19081183 MS.gene55609:CDS 15.0%
!!! AGTTTTTGAAATAAATGTTT+TGG - chr6.2:19083323-19083342 MS.gene55609:CDS 15.0%
!!! TATCATATTTTTTTGAAAAG+GGG + chr6.2:19081636-19081655 None:intergenic 15.0%
!!! TTAAATTAAGGAATTAGTTT+TGG + chr6.2:19082116-19082135 None:intergenic 15.0%
!!! TTCATTAATTTGGTATAATA+TGG + chr6.2:19082282-19082301 None:intergenic 15.0%
!! ACTGATTATAAACCAAAAAA+AGG + chr6.2:19081915-19081934 None:intergenic 20.0%
!! AGCAATTTCTTTCATTAATT+TGG + chr6.2:19082292-19082311 None:intergenic 20.0%
!! GAAAAGAGAAAAATAATCTA+GGG + chr6.2:19082150-19082169 None:intergenic 20.0%
!! GATTGAAGAATTAATAAAAG+TGG - chr6.2:19081944-19081963 MS.gene55609:intron 20.0%
!! GTTAAGATGATTACAAAATT+TGG + chr6.2:19081608-19081627 None:intergenic 20.0%
!! TGAAAAGAGAAAAATAATCT+AGG + chr6.2:19082151-19082170 None:intergenic 20.0%
!! TTTCTCACAATATTAATTGT+AGG + chr6.2:19082672-19082691 None:intergenic 20.0%
!!! ACTAATTTTTGTCCTTAAAA+AGG + chr6.2:19081686-19081705 None:intergenic 20.0%
!!! ATCATATTTTTTTGAAAAGG+GGG + chr6.2:19081635-19081654 None:intergenic 20.0%
!!! CTAATTTTTGTCCTTAAAAA+GGG + chr6.2:19081685-19081704 None:intergenic 20.0%
!!! TATGTCATATGTAATAGTTT+TGG - chr6.2:19082792-19082811 MS.gene55609:CDS 20.0%
! AATAAATTAAGCACATACCT+GGG + chr6.2:19081394-19081413 None:intergenic 25.0%
! ACCTCTCAAAAATAGTTTAA+AGG - chr6.2:19083196-19083215 MS.gene55609:CDS 25.0%
! AGAAAACTTCTTGAGAAATT+TGG - chr6.2:19080918-19080937 MS.gene55609:intron 25.0%
! AGAAAGGAATGTGATAAAAA+GGG + chr6.2:19082084-19082103 None:intergenic 25.0%
! ATGTGCTTAATTTATTGCAT+GGG - chr6.2:19081398-19081417 MS.gene55609:intron 25.0%
! ATTGACATGAAAACAATGTT+TGG - chr6.2:19082955-19082974 MS.gene55609:CDS 25.0%
! CTGAAACCAATAAAAAACAT+TGG + chr6.2:19080958-19080977 None:intergenic 25.0%
! GTTGTTTGGATTATTAGTAT+TGG + chr6.2:19080778-19080797 None:intergenic 25.0%
! TAATTGTAGGTTTCAATTGT+CGG + chr6.2:19082659-19082678 None:intergenic 25.0%
! TATGTGCTTAATTTATTGCA+TGG - chr6.2:19081397-19081416 MS.gene55609:intron 25.0%
!! AAGAAGTTTTCTTATTCTCA+CGG + chr6.2:19080910-19080929 None:intergenic 25.0%
!! AGTTTTCAACAAAATTGTCA+TGG - chr6.2:19082609-19082628 MS.gene55609:intron 25.0%
!! TGAAAATGGATTCAAGTATA+AGG + chr6.2:19080854-19080873 None:intergenic 25.0%
!! TTAAGACAAAACCCTTTTTA+AGG - chr6.2:19081671-19081690 MS.gene55609:intron 25.0%
!! TTTTTATCACATTCCTTTCT+GGG - chr6.2:19082084-19082103 MS.gene55609:intron 25.0%
!!! ACCTTTAAACTATTTTTGAG+AGG + chr6.2:19083200-19083219 None:intergenic 25.0%
!!! ATATTAATTTTAGGGGGAAT+AGG - chr6.2:19082853-19082872 MS.gene55609:intron 25.0%
!!! ATTTTGTTATACTCTTCTCT+AGG - chr6.2:19082179-19082198 MS.gene55609:intron 25.0%
!!! TGGTTTATAATCAGTTTTGA+TGG - chr6.2:19081920-19081939 MS.gene55609:intron 25.0%
!!! TTTTTTCTGGAATGAATGAA+GGG + chr6.2:19082400-19082419 None:intergenic 25.0%
AGAATTCATAGTGAAAGTTG+AGG + chr6.2:19081132-19081151 None:intergenic 30.0%
CAATAAATTAAGCACATACC+TGG + chr6.2:19081395-19081414 None:intergenic 30.0%
CAGAAAGGAATGTGATAAAA+AGG + chr6.2:19082085-19082104 None:intergenic 30.0%
CTTCATTCATTCCAGAAAAA+AGG - chr6.2:19082399-19082418 MS.gene55609:intron 30.0%
GACGACACTTATAAATGAAA+CGG + chr6.2:19083110-19083129 None:intergenic 30.0%
TCAAATCAATTTGCCTCAAA+TGG - chr6.2:19081304-19081323 MS.gene55609:intron 30.0%
TCAAATTTCAACTATTACCC+AGG - chr6.2:19081374-19081393 MS.gene55609:intron 30.0%
TGTAAGAAACCTGTTTAAGT+TGG + chr6.2:19081538-19081557 None:intergenic 30.0%
! AAAGTGAACTCATGTTTTTC+CGG + chr6.2:19082040-19082059 None:intergenic 30.0%
! AAATTTGAAGCATGATCAGA+AGG + chr6.2:19081362-19081381 None:intergenic 30.0%
! AATCGATGATAATGCAAATG+TGG - chr6.2:19082495-19082514 MS.gene55609:intron 30.0%
! CTTGAATCCATTTTCAATAG+TGG - chr6.2:19080858-19080877 MS.gene55609:intron 30.0%
! CTTTTTATCACATTCCTTTC+TGG - chr6.2:19082083-19082102 MS.gene55609:intron 30.0%
! GTAAGAAACCTGTTTAAGTT+GGG + chr6.2:19081537-19081556 None:intergenic 30.0%
! GTTGTACTAATCTTCTTTTC+CGG - chr6.2:19082018-19082037 MS.gene55609:intron 30.0%
! GTTTGGTGAAGATGTAATAT+TGG - chr6.2:19082972-19082991 MS.gene55609:CDS 30.0%
! TATGCTTTTCATTTAATCCC+AGG + chr6.2:19081995-19082014 None:intergenic 30.0%
! TCAAGTATAAGGATTTGTTC+AGG + chr6.2:19080843-19080862 None:intergenic 30.0%
!! ATAAGGATTTGTTCAGGTTT+TGG + chr6.2:19080837-19080856 None:intergenic 30.0%
!! ATCCATTTTCAATAGTGGAA+TGG - chr6.2:19080863-19080882 MS.gene55609:intron 30.0%
!! ATTTTGATCCCAACTTAAAC+AGG - chr6.2:19081526-19081545 MS.gene55609:intron 30.0%
!!! CTTTTTTCTGGAATGAATGA+AGG + chr6.2:19082401-19082420 None:intergenic 30.0%
!!! GTGATGCCAATGTTTTTTAT+TGG - chr6.2:19080949-19080968 MS.gene55609:intron 30.0%
!!! TTTTTCTGGAATGAATGAAG+GGG + chr6.2:19082399-19082418 None:intergenic 30.0%
AAGAAACCAAACTCATTGGT+TGG + chr6.2:19083021-19083040 None:intergenic 35.0%
CATCAAGAAACCAAACTCAT+TGG + chr6.2:19083025-19083044 None:intergenic 35.0%
GAATCTACAACACTTGTCAA+AGG + chr6.2:19081852-19081871 None:intergenic 35.0%
GACCATTCCACTATTGAAAA+TGG + chr6.2:19080868-19080887 None:intergenic 35.0%
GGAACTGTCAAATCAACAAA+AGG + chr6.2:19081974-19081993 None:intergenic 35.0%
GTGATCACAGTGTTTATCAA+TGG - chr6.2:19082901-19082920 MS.gene55609:intron 35.0%
GTTTCAATTGTCGGTGATAT+TGG + chr6.2:19082650-19082669 None:intergenic 35.0%
! ATTCTCACGGTTTCATCTTT+TGG + chr6.2:19080897-19080916 None:intergenic 35.0%
!! AACTTTGAGACTGAACATGT+TGG + chr6.2:19080755-19080774 None:intergenic 35.0%
!! ATTTTAGGGGGAATAGGATA+TGG - chr6.2:19082859-19082878 MS.gene55609:intron 35.0%
!! GTAATATTGGTTCATTCCTC+TGG - chr6.2:19082985-19083004 MS.gene55609:CDS 35.0%
!! TCACTCTTTTCAGTGTTGTT+TGG + chr6.2:19080792-19080811 None:intergenic 35.0%
!! TTGTTGATTTGACAGTTCCT+GGG - chr6.2:19081975-19081994 MS.gene55609:intron 35.0%
!! TTTGTTGATTTGACAGTTCC+TGG - chr6.2:19081974-19081993 MS.gene55609:intron 35.0%
!! TTTTAGGGGGAATAGGATAT+GGG - chr6.2:19082860-19082879 MS.gene55609:intron 35.0%
!!! TGTTTTGGTGTTTTTGTTCC+AGG - chr6.2:19083338-19083357 MS.gene55609:CDS 35.0%
ATGTCAATTGCAGTACCTCT+TGG + chr6.2:19082943-19082962 None:intergenic 40.0%
CCTTGGGAAGACAAAATGAA+GGG + chr6.2:19082357-19082376 None:intergenic 40.0%
GTGAAACTGTGAGATCAAGA+TGG - chr6.2:19080808-19080827 MS.gene55609:intron 40.0%
TCAGTTCCAACCAATGAGTT+TGG - chr6.2:19083012-19083031 MS.gene55609:CDS 40.0%
TTTAGGGGGAATAGGATATG+GGG - chr6.2:19082861-19082880 MS.gene55609:intron 40.0%
! CTTGAGAAATTTGGAGCTGT+TGG - chr6.2:19080927-19080946 MS.gene55609:intron 40.0%
!! GTTTTGGATGAAACCCAGAA+AGG + chr6.2:19082100-19082119 None:intergenic 40.0%
!!! CACTGTGATCTCCTTTTTTC+TGG + chr6.2:19082413-19082432 None:intergenic 40.0%
AACAGTACCTCTCTGTCTCT+TGG - chr6.2:19081083-19081102 MS.gene55609:CDS 45.0%
CCTTTGTCACACTTTGCCTT+GGG + chr6.2:19082373-19082392 None:intergenic 45.0%
GCATGGTGAAAGCTACTATC+TGG - chr6.2:19083056-19083075 MS.gene55609:CDS 45.0%
GCCTTGGGAAGACAAAATGA+AGG + chr6.2:19082358-19082377 None:intergenic 45.0%
GGTTCGTCTTCATCATGTGT+TGG - chr6.2:19081185-19081204 MS.gene55609:CDS 45.0%
GTACCTCTTGGCATTTCTGT+TGG + chr6.2:19082931-19082950 None:intergenic 45.0%
GTTCCAACAGAAATGCCAAG+AGG - chr6.2:19082925-19082944 MS.gene55609:intron 45.0%
TATGGGGGGAGTAATGTTTC+AGG - chr6.2:19082877-19082896 MS.gene55609:intron 45.0%
TCCTTTGTCACACTTTGCCT+TGG + chr6.2:19082374-19082393 None:intergenic 45.0%
TCGTCTTCATCATGTGTTGG+TGG - chr6.2:19081188-19081207 MS.gene55609:CDS 45.0%
TTAGGGGGAATAGGATATGG+GGG - chr6.2:19082862-19082881 MS.gene55609:intron 45.0%
TTGATGCAGAACTTGCAGCA+TGG - chr6.2:19083039-19083058 MS.gene55609:CDS 45.0%
! CCCTTCATTTTGTCTTCCCA+AGG - chr6.2:19082354-19082373 MS.gene55609:intron 45.0%
! CTCACGGTTTCATCTTTTGG+TGG + chr6.2:19080894-19080913 None:intergenic 45.0%
!! AAGAGACAGAGAGGTACTGT+TGG + chr6.2:19081084-19081103 None:intergenic 45.0%
!! CTGCACTGGTATTGGTGATA+TGG + chr6.2:19081059-19081078 None:intergenic 45.0%
!! GCTGAAGTGTTGTCCATTTG+AGG + chr6.2:19081320-19081339 None:intergenic 45.0%
!! GGGTTTGGTGGTTTGTACTT+AGG - chr6.2:19081275-19081294 MS.gene55609:intron 45.0%
!! ATTAAACAAAAATTATTTAA+AGG + chr6.2:19081773-19081792 None:intergenic 5.0%
!! TGAAATAAAAAAATTTATTT+AGG + chr6.2:19083285-19083304 None:intergenic 5.0%
!! TTTAAAAAATATATAAAAGT+AGG + chr6.2:19081882-19081901 None:intergenic 5.0%
!!! TTTATTTATATTAATTTTAG+GGG - chr6.2:19082846-19082865 MS.gene55609:intron 5.0%
AGTACTGCCACCGCTTAGTT+GGG + chr6.2:19081030-19081049 None:intergenic 50.0%
CCCAAGGCAAAGTGTGACAA+AGG - chr6.2:19082370-19082389 MS.gene55609:intron 50.0%
CTTGTGCTTGCTTTGACACC+TGG + chr6.2:19083359-19083378 None:intergenic 50.0%
TAGGGGGAATAGGATATGGG+GGG - chr6.2:19082863-19082882 MS.gene55609:intron 50.0%
!! TCATCATGTGTTGGTGGTGC+TGG - chr6.2:19081194-19081213 MS.gene55609:CDS 50.0%
!! TGTTGGTGCTGCACTGGTAT+TGG + chr6.2:19081067-19081086 None:intergenic 50.0%
CAGTACTGCCACCGCTTAGT+TGG + chr6.2:19081031-19081050 None:intergenic 55.0%
CTGCTGCTGGTGGAGAACAA+GGG - chr6.2:19081255-19081274 MS.gene55609:intron 55.0%
GCTGGTGGAGAACAAGGGTT+TGG - chr6.2:19081260-19081279 MS.gene55609:intron 55.0%
GGTGGAGAACAAGGGTTTGG+TGG - chr6.2:19081263-19081282 MS.gene55609:intron 55.0%
GGTTGGAACTGAGACTCCAG+AGG + chr6.2:19083004-19083023 None:intergenic 55.0%
TGCAGCACCAAGAGACAGAG+AGG + chr6.2:19081093-19081112 None:intergenic 55.0%
!! AGGTACTGTTGGTGCTGCAC+TGG + chr6.2:19081073-19081092 None:intergenic 55.0%
!! CTGTCTCTTGGTGCTGCACT+TGG - chr6.2:19081095-19081114 MS.gene55609:CDS 55.0%
!! CTTGGTGCTGCACTTGGTCT+TGG - chr6.2:19081101-19081120 MS.gene55609:CDS 55.0%
!! TGTGTTGGTGGTGCTGGAGT+TGG - chr6.2:19081200-19081219 MS.gene55609:CDS 55.0%
ACTGCCACCGCTTAGTTGGG+CGG + chr6.2:19081027-19081046 None:intergenic 60.0%
GCTGCTGCTGGTGGAGAACA+AGG - chr6.2:19081254-19081273 MS.gene55609:intron 60.0%
!! CTTGGTCTTGGTGCTGCTGC+TGG - chr6.2:19081242-19081261 MS.gene55609:intron 60.0%
!! GCTGGAGTTGGTGTTGGTGC+TGG - chr6.2:19081212-19081231 MS.gene55609:CDS 60.0%
!! GCTGGTGCTGGTCTTGGTCT+TGG - chr6.2:19081230-19081249 MS.gene55609:CDS 60.0%
!! GGTGCTGCACTTGGTCTTGG+TGG - chr6.2:19081104-19081123 MS.gene55609:CDS 60.0%
!! GGTGGTGCTGGAGTTGGTGT+TGG - chr6.2:19081206-19081225 MS.gene55609:CDS 60.0%
!! GTTGGTGCTGGTGCTGGTCT+TGG - chr6.2:19081224-19081243 MS.gene55609:CDS 60.0%
!! GTTGGTGTTGGTGCTGGTGC+TGG - chr6.2:19081218-19081237 MS.gene55609:CDS 60.0%
ACGCCGTCAGAGGCAGATGC+AGG - chr6.2:19080998-19081017 MS.gene55609:intron 65.0%
CGGCCTGCATCTGCCTCTGA+CGG + chr6.2:19081004-19081023 None:intergenic 65.0%
! CTCGCTCTAGACGCCGTCAG+AGG - chr6.2:19080988-19081007 MS.gene55609:intron 65.0%
! GACGGCGTCTAGAGCGAGAG+CGG + chr6.2:19080986-19081005 None:intergenic 65.0%
!! GGTCTTGGTGCTGCTGCTGG+TGG - chr6.2:19081245-19081264 MS.gene55609:intron 65.0%
CAGGCCGCCGCCCAACTAAG+CGG - chr6.2:19081017-19081036 MS.gene55609:intron 70.0%
GCCACCGCTTAGTTGGGCGG+CGG + chr6.2:19081024-19081043 None:intergenic 70.0%
GCCGCCGCCCAACTAAGCGG+TGG - chr6.2:19081020-19081039 MS.gene55609:intron 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 19080732 19083383 19080732 ID=MS.gene55609
chr6.2 mRNA 19080732 19083383 19080732 ID=MS.gene55609.t1;Parent=MS.gene55609
chr6.2 exon 19082930 19083383 19082930 ID=MS.gene55609.t1.exon1;Parent=MS.gene55609.t1
chr6.2 CDS 19082930 19083383 19082930 ID=cds.MS.gene55609.t1;Parent=MS.gene55609.t1
chr6.2 exon 19082720 19082818 19082720 ID=MS.gene55609.t1.exon2;Parent=MS.gene55609.t1
chr6.2 CDS 19082720 19082818 19082720 ID=cds.MS.gene55609.t1;Parent=MS.gene55609.t1
chr6.2 exon 19081038 19081249 19081038 ID=MS.gene55609.t1.exon3;Parent=MS.gene55609.t1
chr6.2 CDS 19081038 19081249 19081038 ID=cds.MS.gene55609.t1;Parent=MS.gene55609.t1
chr6.2 exon 19080732 19080755 19080732 ID=MS.gene55609.t1.exon4;Parent=MS.gene55609.t1
chr6.2 CDS 19080732 19080755 19080732 ID=cds.MS.gene55609.t1;Parent=MS.gene55609.t1
Gene Sequence

>MS.gene55609

ATGGAAGATCAACAACAAAACCAACATGTTCAGTCTCAAAGTTCCAATACTAATAATCCAAACAACACTGAAAAGAGTGAAACTGTGAGATCAAGATGGACACCAAAACCTGAACAAATCCTTATACTTGAATCCATTTTCAATAGTGGAATGGTCAATCCACCAAAAGATGAAACCGTGAGAATAAGAAAACTTCTTGAGAAATTTGGAGCTGTTGGTGATGCCAATGTTTTTTATTGGTTTCAGAATCGCCGCTCTCGCTCTAGACGCCGTCAGAGGCAGATGCAGGCCGCCGCCCAACTAAGCGGTGGCAGTACTGCAAATCCATATCACCAATACCAGTGCAGCACCAACAGTACCTCTCTGTCTCTTGGTGCTGCACTTGGTCTTGGTGGTTCCTCAACTTTCACTATGAATTCTTCTTCTTGTTCTACTTATAATAATAACTTTTCGGGTTCGTCTTCATCATGTGTTGGTGGTGCTGGAGTTGGTGTTGGTGCTGGTGCTGGTCTTGGTCTTGGTGCTGCTGCTGGTGGAGAACAAGGGTTTGGTGGTTTGTACTTAGGCTCTACTCAAATCAATTTGCCTCAAATGGACAACACTTCAGCTGCTTCATCAATTTTGCAGCCTTCTGATCATGCTTCAAATTTCAACTATTACCCAGGTATGTGCTTAATTTATTGCATGGGTGTGTTATAATCCTATAATTTTTTTTTTATGAACAAAAAAACTAGATTTCAAATTAAATTGAGTAAAGAAATACTCAACTCTTCATATGAATTCTATTTAATTTTATTTTGATCCCAACTTAAACAGGTTTCTTACATGATTCATTTGTTAAATCTTCTTCCATTTTTTTTTTTGAAAGTTCTTCCAAATTTTGTAATCATCTTAACAAAACCCCCTTTTCAAAAAAATATGATATTTTTCAGATTCTCTTTAAGACAAAACCCTTTTTAAGGACAAAAATTAGTACTAGAATCTATATTACTTTTCTAAACGTAAATTAATTTAATACTTCTGTCATGTTATTAGTCTCCTTTAAATAATTTTTGTTTAATTAGTTTAGACTGATTATTTTAATAAACTCTAAAACAAGTTAGAACTTTCATTAAATCCTTTGACAAGTGTTGTAGATTCAGATTCACCTACTTTTATATATTTTTTAAAATAAAACTATCCTTTTTTTGGTTTATAATCAGTTTTGATGGTGATTGAAGAATTAATAAAAGTGGAAAACCTTTTGTTGATTTGACAGTTCCTGGGATTAAATGAAAAGCATAAAAGTTGTACTAATCTTCTTTTCCGGAAAAACATGAGTTCACTTTCTTGTTTCAGTTTCTGTTCTTCCCTTTTTATCACATTCCTTTCTGGGTTTCATCCAAAACTAATTCCTTAATTTAAAAATTTCTAAACCCTAGATTATTTTTCTCTTTTCATTTTACTAATTTTGTTATACTCTTCTCTAGGTCATTGATTAGTTAAAAAAAATGATTAATTTAGATAATTTACATATTGTCATCATAAATTGAGAAACATTATATTGTCCATATTATACCAAATTAATGAAAGAAATTGCTATTCCTTCTTTTTTAACTTATTTTTCTATATGATATTCTGTGCCCTTCATTTTGTCTTCCCAAGGCAAAGTGTGACAAAGGAAACCCCTTCATTCATTCCAGAAAAAAGGAGATCACAGTGCAGCAAATTAATCTAATACACTCATAATACTAAAATGTACAAGCTTTCAAATTACACTCACAAATCGATGATAATGCAAATGTGGCGATGATGTAATGATTGATTAATGTATGTTTGAATTGACTAGTTTGACAAAATCACACAGACGTCATGATTTTGTTGAAGCTACTGAGTGTAGTTTTCAACAAAATTGTCATGGCTTACGTTCATTCTGCCAATATCACCGACAATTGAAACCTACAATTAATATTGTGAGAAAAAGACGATAATAAACTAAATTTGTTCTTGCATTATTTTTATATAATTATTTTTATAATGAAGTTTTTTTTTTTAATAATGAAGTTTTATATTTTGTTTTGTATGTCATATGTAATAGTTTTGGTGTGTTTATAATTGATTGATATGCTTTAATATTTATTTATATTAATTTTAGGGGGAATAGGATATGGGGGGAGTAATGTTTCAGGTGTGATCACAGTGTTTATCAATGGAGTTCCAACAGAAATGCCAAGAGGTACTGCAATTGACATGAAAACAATGTTTGGTGAAGATGTAATATTGGTTCATTCCTCTGGAGTCTCAGTTCCAACCAATGAGTTTGGTTTCTTGATGCAGAACTTGCAGCATGGTGAAAGCTACTATCTGGTAATTTAGCACTCATTCAACATACTTTTCCGTTTCATTTATAAGTGTCGTCTTTAAAATGCTTTTTCAACTCAAATTATTTATCACTCTTTTTATAAACAGAGTGCGTCTGATATGAACCTCTCAAAAATAGTTTAAAGGTTGACATTTATTATTTTTAATAAAAAATAAATTTTATAATTAGAAATATTTTCTTTGTGTACACCTAAATAAATTTTTTTATTTCAAAAAAAAAACCTAAATAAAGTTTTTGAAATAAATGTTTTGGTGTTTTTGTTCCAGGTGTCAAAGCAAGCACAAGCTTGA
Protein sequence

>MS.gene55609.t1

MEDQQQNQHVQSQSSNTNNPNNTEKSETVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQMQAAAQLSGGSTANPYHQYQCSTNSTSLSLGAALGLGGSSTFTMNSSSCSTYNNNFSGSTQINLPQMDNTSAASSILQPSDHASNFNYYPGGIGYGGSNVSGVITVFINGVPTEMPRGTAIDMKTMFGEDVILVHSSGVSVPTNEFGFLMQNLQHGESYYLVSKQAQA