AlfalfaGEDB | MS.gene55613

M. sativa cultivar XinJiangDaYe / MS.gene55613

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55613.t1	XP_013451513.1	77.4	305	62	1	1	298	48	352	1.70E-124	455.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55613.t1	Q93ZL5	69.7	89	24	2	30	115	117	205	1.3e-29	131.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55613.t1	A0A072U836	77.4	305	62	1	1	298	48	352	1.2e-124	455.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene55613.t1	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55613.t1	MTR_6g027450	89.933	298	21	2	1	298	41	329	0.0	541
MS.gene55613.t1	MTR_6g027460	77.211	294	60	1	1	287	48	341	9.72e-164	460
MS.gene55613.t1	MTR_7g086780	53.103	290	114	7	10	297	62	331	1.26e-88	271
MS.gene55613.t1	MTR_7g010950	46.524	187	78	5	8	191	94	261	2.43e-45	160
MS.gene55613.t1	MTR_4g082060	48.851	174	68	5	11	183	85	238	1.91e-42	152
MS.gene55613.t1	MTR_6g012450	39.344	244	119	6	7	230	96	330	4.62e-42	151
MS.gene55613.t1	MTR_3g435480	38.462	273	128	10	8	279	105	338	4.27e-41	148
MS.gene55613.t1	MTR_8g044220	37.383	214	96	5	20	228	88	268	1.36e-34	130
MS.gene55613.t1	MTR_5g041420	51.351	111	45	2	7	111	99	206	3.40e-31	119
MS.gene55613.t1	MTR_2g016030	57.895	95	32	3	15	102	7	100	1.82e-29	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55613.t1	AT3G47500	47.368	152	62	3	5	156	71	204	2.17e-38	140
MS.gene55613.t1	AT5G39660	57.391	115	36	2	15	116	92	206	6.35e-38	139
MS.gene55613.t1	AT5G39660	57.391	115	36	2	15	116	92	206	6.35e-38	139
MS.gene55613.t1	AT5G39660	57.391	115	36	2	15	116	92	206	6.35e-38	139
MS.gene55613.t1	AT1G26790	55.000	120	49	2	11	125	68	187	1.69e-35	131
MS.gene55613.t1	AT5G62430	63.043	92	29	2	28	114	30	121	1.21e-34	127
MS.gene55613.t1	AT1G69570	52.632	114	52	1	37	148	120	233	7.31e-33	125
MS.gene55613.t1	AT2G34140	56.522	92	27	1	24	102	20	111	7.32e-33	119
MS.gene55613.t1	AT1G29160	76.667	60	14	0	43	102	56	115	5.27e-31	114
MS.gene55613.t1	AT3G55370	57.143	70	30	0	45	114	72	141	2.17e-25	103

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Find 53 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTACACAAGCACTG+TGG	0.736976	6.2:-19200939	MS.gene55613:CDS
AACATCTTCAGACCGAACAT+TGG	0.582195	6.2:-19200215	MS.gene55613:CDS
AACGTTTCTCATTGTTCCAC+CGG	0.503306	6.2:+19200745	None:intergenic
AACTAGGATCAACGCCATAA+GGG	0.563985	6.2:+19200261	None:intergenic
AAGCACTGTGGAAGATAATA+TGG	0.348391	6.2:-19200927	MS.gene55613:CDS
AATGGCATTGTCCTAAAATT+TGG	0.232669	6.2:-19200575	MS.gene55613:CDS
AATTTGTTCCTGAATCATTT+AGG	0.243494	6.2:-19200187	MS.gene55613:CDS
ACAAATTGCAAGCCAATGTT+CGG	0.513658	6.2:+19200203	None:intergenic
ACAATGAGAAACGTTCCTTT+CGG	0.504607	6.2:-19200737	MS.gene55613:CDS
ACATCGAATCGTTAGATTCA+TGG	0.328881	6.2:+19200534	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGCATTGTCCTAAAATT+TGG	-	chr6.2:19200547-19200566	MS.gene55613:CDS	30.0%
ATATTTCTCTTGTGGTTTCT+AGG	+	chr6.2:19200619-19200638	None:intergenic	30.0%
TATCTGAATCCGAACATAAT+AGG	-	chr6.2:19200734-19200753	MS.gene55613:CDS	30.0%
TTCAGGTGCTCAAATAATAA+TGG	-	chr6.2:19200529-19200548	MS.gene55613:CDS	30.0%
TTGCATCAATATTTCTCTTG+TGG	+	chr6.2:19200627-19200646	None:intergenic	30.0%
ACAAATTGCAAGCCAATGTT+CGG	+	chr6.2:19200922-19200941	None:intergenic	35.0%
ACAATGAGAAACGTTCCTTT+CGG	-	chr6.2:19200385-19200404	MS.gene55613:CDS	35.0%
ACATCGAATCGTTAGATTCA+TGG	+	chr6.2:19200591-19200610	None:intergenic	35.0%
AGACAAAGTCCTCAAAAAAC+CGG	-	chr6.2:19200237-19200256	MS.gene55613:CDS	35.0%
AGGAATGGATCAGTTTCAAT+AGG	-	chr6.2:19200955-19200974	MS.gene55613:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	19200124	19201020	19200124	ID=MS.gene55613
chr6.2	mRNA	19200124	19201020	19200124	ID=MS.gene55613.t1;Parent=MS.gene55613
chr6.2	exon	19200124	19201020	19200124	ID=MS.gene55613.t1.exon1;Parent=MS.gene55613.t1
chr6.2	CDS	19200124	19201020	19200124	ID=cds.MS.gene55613.t1;Parent=MS.gene55613.t1

Gene Sequence

>MS.gene55613

ATGCCTCATATTCAAAACATTGAGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTTACACAAGCACTGTGGAAGATAATATGGAAACTAGCAGCACAGATCAAGACAAAGTCCTCAAAAAACCGGACAAGATTGTTCAATGTCCAAGATGCAACAGTTTCAACACGAAATTTTGTTATTTCAATAACTACAATGTCAGTCAACCTCGGCATTTTTGTCGGAAGTGTCATAGATATTGGACTGCCGGTGGAACAATGAGAAACGTTCCTTTCGGTGCAGGGAGACGGAAGAACAAGCAGATAGCTTCTCAATATCGCCACATGATTGTAGCTTCCGGTGGAATTTCAACCTCAAATTCTGAAAGTAACGTCTCTTCTACCGAATCTGCTGTGGTTTTCAGGTGCTCAAATAATAATGGCATTGTCCTAAAATTTGGTCCGGAAAATGCATTTCTCCATGAATCTAACGATTCGATGTTTAATCCTAGAAACCACAAGAGAAATATTGATGCAAGTGTTAATAATTGTAGAGAAAATGGAGATGAAGAATCATCCTTATGTGTATCTTCTGTGACAAATGGTTATACTCGAGGAAACGAGTTATCTGAATCCGAACATAATAGGTCAAAACTATTGCAGAGCTACCCTGCATCTTCATGGATGATTCCATTGAATCAAAGCTTGAACAATGTTCCTTCCATGGTTCAATCTTCAATGCAAATGTGTAACCCTTATGGCGTTGATCCTAGTTCAATGCAGTGGTGCCATATGCCGAACATCTTCAGACCGAACATTGGCTTGCAATTTGTTCCTGAATCATTTAGGAATGGATCAGTTTCAATAGGTTCAAATAATTGTTTTTCGCCTTCTTCATCTACTACTAGCTAG

Protein sequence

>MS.gene55613.t1

MPHIQNIEKSKNSSNEENESKVYTSTVEDNMETSSTDQDKVLKKPDKIVQCPRCNSFNTKFCYFNNYNVSQPRHFCRKCHRYWTAGGTMRNVPFGAGRRKNKQIASQYRHMIVASGGISTSNSESNVSSTESAVVFRCSNNNGIVLKFGPENAFLHESNDSMFNPRNHKRNIDASVNNCRENGDEESSLCVSSVTNGYTRGNELSESEHNRSKLLQSYPASSWMIPLNQSLNNVPSMVQSSMQMCNPYGVDPSSMQWCHMPNIFRPNIGLQFVPESFRNGSVSIGSNNCFSPSSSTTS