AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55614

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55614.t1 MTR_6g027460 91.645 383 17 3 1 383 1 368 0.0 680
MS.gene55614.t1 MTR_6g027450 73.297 367 60 6 1 367 1 329 0.0 518
MS.gene55614.t1 MTR_7g086780 50.000 380 137 10 15 383 10 347 4.42e-112 334
MS.gene55614.t1 MTR_7g010950 45.876 194 76 6 56 246 94 261 5.08e-43 156
MS.gene55614.t1 MTR_6g012450 32.951 349 165 10 55 383 96 395 8.56e-43 156
MS.gene55614.t1 MTR_4g082060 30.120 415 194 12 9 383 4 362 1.19e-41 152
MS.gene55614.t1 MTR_3g435480 37.358 265 111 10 50 281 98 340 9.43e-40 147
MS.gene55614.t1 MTR_8g044220 33.083 266 115 8 41 289 67 286 3.37e-36 137
MS.gene55614.t1 MTR_5g041420 53.509 114 44 2 55 162 99 209 3.00e-34 129
MS.gene55614.t1 MTR_5g041530 52.294 109 49 1 54 162 100 205 1.87e-30 120
MS.gene55614.t1 MTR_2g016030 77.419 62 14 0 89 150 39 100 3.64e-30 114
MS.gene55614.t1 MTR_5g041380 62.791 86 27 2 65 150 100 180 2.51e-29 117
MS.gene55614.t1 MTR_5g041400 57.778 90 32 2 61 150 89 172 9.49e-29 115
MS.gene55614.t1 MTR_8g068210 47.872 94 36 2 59 152 7 87 4.27e-24 102
MS.gene55614.t1 MTR_8g027295 60.317 63 25 0 92 154 19 81 1.35e-23 99.4
MS.gene55614.t1 MTR_4g022370 60.656 61 24 0 90 150 75 135 2.09e-23 100
MS.gene55614.t1 MTR_4g088580 44.762 105 48 2 56 152 8 110 2.31e-23 100
MS.gene55614.t1 MTR_4g461080 55.844 77 33 1 74 149 5 81 2.56e-23 98.6
MS.gene55614.t1 MTR_2g093220 55.263 76 33 1 76 150 18 93 5.04e-23 98.2
MS.gene55614.t1 MTR_3g091820 54.930 71 32 0 81 151 27 97 5.44e-23 98.2
MS.gene55614.t1 MTR_8g479350 52.703 74 35 0 97 170 68 141 1.03e-22 98.2
MS.gene55614.t1 MTR_2g096740 56.716 67 29 0 84 150 64 130 1.28e-22 97.1
MS.gene55614.t1 MTR_2g096740 56.716 67 29 0 84 150 49 115 1.51e-22 96.7
MS.gene55614.t1 MTR_4g063780 61.667 60 23 0 90 149 68 127 1.91e-22 97.4
MS.gene55614.t1 MTR_8g079060 42.623 122 63 3 97 218 29 143 2.62e-22 94.7
MS.gene55614.t1 MTR_4g089095 48.485 99 35 2 69 152 7 104 7.76e-22 95.1
MS.gene55614.t1 MTR_2g013370 67.241 58 18 1 95 152 44 100 1.37e-21 93.6
MS.gene55614.t1 MTR_2g059540 69.388 49 15 0 97 145 31 79 1.94e-21 91.7
MS.gene55614.t1 MTR_2g014060 54.688 64 29 0 85 148 13 76 2.27e-21 94.4
MS.gene55614.t1 MTR_1g077600 47.500 80 37 1 75 149 16 95 2.47e-21 92.8
MS.gene55614.t1 MTR_4g089095 69.643 56 16 1 97 152 16 70 2.51e-21 92.8
MS.gene55614.t1 MTR_1g077600 47.500 80 37 1 75 149 16 95 2.65e-21 93.2
MS.gene55614.t1 MTR_7g059400 53.521 71 31 1 82 150 59 129 2.91e-21 94.4
MS.gene55614.t1 MTR_8g015840 65.385 52 18 0 97 148 20 71 3.43e-21 91.3
MS.gene55614.t1 MTR_4g109980 64.151 53 19 0 95 147 38 90 5.80e-21 92.8
MS.gene55614.t1 MTR_7g024670 67.308 52 17 0 98 149 78 129 7.66e-21 93.2
MS.gene55614.t1 MTR_3g090430 54.167 72 31 1 81 150 33 104 3.02e-20 90.9
MS.gene55614.t1 MTR_5g031440 60.000 55 22 0 93 147 39 93 3.33e-20 90.9
MS.gene55614.t1 MTR_2g014170 67.347 49 16 0 97 145 45 93 7.46e-20 89.4
MS.gene55614.t1 MTR_3g077750 56.452 62 26 1 87 147 50 111 1.39e-19 89.4
MS.gene55614.t1 MTR_1g056810 65.385 52 18 0 99 150 14 65 1.74e-19 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55614.t1 AT3G47500 56.667 120 46 3 53 172 71 184 2.66e-39 145
MS.gene55614.t1 AT5G39660 44.828 174 61 6 63 221 92 245 9.94e-36 136
MS.gene55614.t1 AT5G39660 44.828 174 61 6 63 221 92 245 9.94e-36 136
MS.gene55614.t1 AT5G39660 44.828 174 61 6 63 221 92 245 9.94e-36 136
MS.gene55614.t1 AT5G62430 52.137 117 49 2 64 178 26 137 6.12e-35 130
MS.gene55614.t1 AT1G26790 48.951 143 60 4 55 184 67 209 9.15e-34 129
MS.gene55614.t1 AT2G34140 58.065 93 26 1 71 150 19 111 9.75e-34 124
MS.gene55614.t1 AT1G69570 45.385 130 43 2 85 213 120 222 3.38e-31 122
MS.gene55614.t1 AT1G29160 78.333 60 13 0 91 150 56 115 3.72e-31 117
MS.gene55614.t1 AT3G55370 57.143 70 30 0 93 162 72 141 1.96e-24 102
MS.gene55614.t1 AT3G55370 57.143 70 30 0 93 162 72 141 2.13e-24 103
MS.gene55614.t1 AT3G55370 57.143 70 30 0 93 162 117 186 4.40e-24 102
MS.gene55614.t1 AT2G28810 40.000 100 57 1 52 148 29 128 4.61e-23 99.0
MS.gene55614.t1 AT2G28810 40.000 100 57 1 52 148 46 145 5.44e-23 99.0
MS.gene55614.t1 AT5G60200 59.375 64 26 0 91 154 49 112 6.87e-23 97.1
MS.gene55614.t1 AT3G21270 69.811 53 16 0 97 149 29 81 1.06e-22 95.1
MS.gene55614.t1 AT2G37590 62.069 58 22 0 93 150 85 142 1.61e-22 97.4
MS.gene55614.t1 AT3G45610 45.055 91 42 2 93 175 36 126 2.38e-22 95.1
MS.gene55614.t1 AT1G51700 52.857 70 31 1 79 148 17 84 3.89e-22 93.2
MS.gene55614.t1 AT1G28310 64.286 56 20 0 97 152 27 82 1.20e-21 94.7
MS.gene55614.t1 AT3G61850 61.017 59 23 0 92 150 57 115 1.41e-21 94.0
MS.gene55614.t1 AT3G61850 61.017 59 23 0 92 150 57 115 1.41e-21 94.0
MS.gene55614.t1 AT1G28310 64.286 56 20 0 97 152 51 106 1.44e-21 94.7
MS.gene55614.t1 AT4G24060 56.923 65 28 0 86 150 42 106 1.45e-21 95.1
MS.gene55614.t1 AT3G61850 61.017 59 23 0 92 150 69 127 1.77e-21 94.0
MS.gene55614.t1 AT5G60850 66.667 54 18 0 97 150 51 104 1.95e-21 94.0
MS.gene55614.t1 AT1G07640 66.038 53 18 0 97 149 21 73 2.35e-21 93.2
MS.gene55614.t1 AT3G61850 61.017 59 23 0 92 150 57 115 2.43e-21 94.0
MS.gene55614.t1 AT3G50410 66.038 53 18 0 97 149 30 82 2.49e-21 92.8
MS.gene55614.t1 AT3G61850 61.017 59 23 0 92 150 69 127 2.85e-21 94.0
MS.gene55614.t1 AT2G28510 66.071 56 19 0 99 154 50 105 2.95e-21 93.2
MS.gene55614.t1 AT1G07640 66.038 53 18 0 97 149 77 129 3.88e-21 93.6
MS.gene55614.t1 AT5G02460 59.016 61 25 0 90 150 88 148 3.89e-21 94.4
MS.gene55614.t1 AT5G66940 53.425 73 27 1 84 156 26 91 4.38e-21 91.3
MS.gene55614.t1 AT1G07640 66.038 53 18 0 97 149 85 137 4.83e-21 93.6
MS.gene55614.t1 AT5G65590 64.815 54 19 0 97 150 41 94 6.15e-21 92.8
MS.gene55614.t1 AT4G00940 52.778 72 30 1 85 152 52 123 1.84e-20 90.9
MS.gene55614.t1 AT4G00940 52.778 72 30 1 85 152 52 123 1.84e-20 90.9
MS.gene55614.t1 AT4G00940 52.778 72 30 1 85 152 52 123 1.84e-20 90.9
MS.gene55614.t1 AT1G21340 42.553 94 53 1 99 191 40 133 5.03e-20 89.0
MS.gene55614.t1 AT5G62940 39.450 109 50 2 55 147 15 123 6.66e-20 90.5
MS.gene55614.t1 AT4G21050 47.436 78 39 1 77 152 2 79 6.88e-20 87.4
MS.gene55614.t1 AT4G38000 49.367 79 38 2 96 172 40 118 9.70e-20 88.2
MS.gene55614.t1 AT3G52440 63.462 52 19 0 99 150 27 78 2.20e-19 87.0
MS.gene55614.t1 AT1G64620 53.333 60 28 0 86 145 38 97 2.38e-19 89.0
MS.gene55614.t1 AT1G47655 65.306 49 17 0 97 145 29 77 3.17e-19 85.9
MS.gene55614.t1 AT3G52440 63.462 52 19 0 99 150 46 97 3.46e-19 87.0
MS.gene55614.t1 AT2G46590 58.491 53 22 0 92 144 63 115 1.34e-18 86.7
MS.gene55614.t1 AT2G46590 58.491 53 22 0 92 144 75 127 1.58e-18 86.7
MS.gene55614.t1 AT4G21040 48.611 72 37 0 99 170 27 98 8.65e-16 76.6
MS.gene55614.t1 AT4G21080 50.877 57 28 0 99 155 27 83 1.15e-14 73.6

Find 80 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGTATTGTCCTAAAATT+TGG 0.197738 6.2:-19208119 MS.gene55614:CDS
CAATCTTGTCTGGTTTCTTT+AGG 0.212759 6.2:+19208441 None:intergenic
TAGAAACCAACGACTCTTCT+AGG 0.239536 6.2:-19208196 MS.gene55614:CDS
TTGGAACAATGTTACTTCTA+TGG 0.251370 6.2:-19207853 MS.gene55614:CDS
GGTAACAATTGTAGAGAAAA+TGG 0.277928 6.2:-19208017 MS.gene55614:CDS
GGTGAGTTCTTCTCAGATTC+AGG 0.283209 6.2:-19209578 MS.gene55614:CDS
AAGATTAAGCATTGAACCTT+TGG 0.298547 6.2:+19208070 None:intergenic
TCTTCTAGTTTCATGCTCTT+TGG 0.299226 6.2:-19209613 MS.gene55614:CDS
TTTAGGTGTTCAAATGATAA+TGG 0.318424 6.2:-19208137 MS.gene55614:CDS
GTCGGAGTTGTCACAGATAT+TGG 0.320960 6.2:-19208337 MS.gene55614:CDS
TTGTTCCAACTTTGATTCAT+TGG 0.340788 6.2:+19207867 None:intergenic
ATTTACCATGGTTGTAGAAT+TGG 0.341653 6.2:+19209555 None:intergenic
AAGCACTGTGGAAGATAATA+TGG 0.348391 6.2:-19208492 MS.gene55614:CDS
CCTTTGTATGGTAGTGGAAA+TGG 0.370217 6.2:-19207684 MS.gene55614:CDS
ATGCAGATGTGTAACCCTTA+TGG 0.380909 6.2:-19207819 MS.gene55614:CDS
AGAGTCGTTGGTTTCTAAAC+TGG 0.381811 6.2:+19208202 None:intergenic
GGACATTGAACAATCTTGTC+TGG 0.411323 6.2:+19208431 None:intergenic
ACAAATTGCAAGCCAATGTT+TGG 0.418330 6.2:+19207732 None:intergenic
GCTCTTTGGTAAGAAGATTC+CGG 0.421687 6.2:-19209599 MS.gene55614:CDS
TGCAGTAACTCAAAGCATAA+AGG 0.422749 6.2:-19208593 MS.gene55614:CDS
ACTAGTAATAGTTGTATCTC+AGG 0.449615 6.2:-19207612 MS.gene55614:CDS
AGGTTTATACCTATTCTGTT+CGG 0.459119 6.2:+19207923 None:intergenic
AATTTGTTCCTGCATCAAAC+AGG 0.461385 6.2:-19207716 MS.gene55614:CDS
GTGTCACGCGCCGAGGGCTG+CGG 0.461399 6.2:-19207772 MS.gene55614:CDS
AGAAATGTTGCTGTCGGTGC+AGG 0.467099 6.2:-19208296 MS.gene55614:CDS
GTTCCATTCCTGTTTGATGC+AGG 0.467432 6.2:+19207708 None:intergenic
AGAGCTACCCTGCATCTTCA+TGG 0.473280 6.2:-19207896 MS.gene55614:CDS
TTGCATCAACATTTCTCTTG+TGG 0.474797 6.2:+19208042 None:intergenic
AATGCAGCCATTTGAACCTA+TGG 0.483789 6.2:+19207653 None:intergenic
TATTGTCCTAAAATTTGGTC+GGG 0.484036 6.2:-19208114 MS.gene55614:CDS
TATTCGAATCCGAACAGAAT+AGG 0.487381 6.2:-19207932 MS.gene55614:CDS
GGAATTATCCATGAAGATGC+AGG 0.489315 6.2:+19207888 None:intergenic
GAAGTAGGATCAATGCCATA+AGG 0.489322 6.2:+19207804 None:intergenic
GGTAATGGCACACCAATCCT+TGG 0.490161 6.2:-19207591 MS.gene55614:CDS
AATAGTTGTATCTCAGGTAA+TGG 0.494093 6.2:-19207606 MS.gene55614:CDS
GGAACACCTTTGTATGGTAG+TGG 0.497692 6.2:-19207690 MS.gene55614:CDS
TTGCTGTCGGTGCAGGGAGA+CGG 0.499466 6.2:-19208289 MS.gene55614:CDS
TAATTCCAATGAATCAAAGT+TGG 0.500347 6.2:-19207872 MS.gene55614:CDS
TGCAGTGGTGTCACGCGCCG+AGG 0.502544 6.2:-19207779 MS.gene55614:CDS
GCAGTGGTGTCACGCGCCGA+GGG 0.506362 6.2:-19207778 MS.gene55614:CDS
ATTTCTCATTGTTCCACCGT+TGG 0.510921 6.2:+19208313 None:intergenic
AGGAATGGAACACCTTTGTA+TGG 0.533609 6.2:-19207696 MS.gene55614:CDS
TTGGTACCTAGAAGAGTCGT+TGG 0.535519 6.2:+19208190 None:intergenic
GTATTGTCCTAAAATTTGGT+CGG 0.547769 6.2:-19208115 MS.gene55614:CDS
ATTCAACATTTGAGCCATGT+TGG 0.548791 6.2:+19208171 None:intergenic
GTTCCTGCATCAAACAGGAA+TGG 0.554691 6.2:-19207711 MS.gene55614:CDS
AAGAGAAATGTTGATGCAAG+TGG 0.555436 6.2:-19208038 MS.gene55614:CDS
TGTGTATCGTCTGTGACAAA+CGG 0.557160 6.2:-19207975 MS.gene55614:CDS
ACCTTTGGATTCATCGAGAG+AGG 0.559535 6.2:+19208085 None:intergenic
AAGTAGGATCAATGCCATAA+GGG 0.561604 6.2:+19207805 None:intergenic
AATGTGTCCATAGGTTCAAA+TGG 0.563336 6.2:-19207660 MS.gene55614:CDS
AAATGGAGAGGAAGAATCAT+CGG 0.568618 6.2:-19208000 MS.gene55614:CDS
ATGTTTGTAACCGCAGCCCT+CGG 0.569606 6.2:+19207762 None:intergenic
GGAAATGGAAATGTGTCCAT+AGG 0.578755 6.2:-19207669 MS.gene55614:CDS
TTGGTTTCTAAACTGGCGGT+CGG 0.586129 6.2:+19208209 None:intergenic
TGACACCACTGCATTGAAGT+AGG 0.587068 6.2:+19207789 None:intergenic
ATCAACCTCGGCATTTCTGT+CGG 0.594840 6.2:-19208355 MS.gene55614:CDS
TCAGGCCAATTCTACAACCA+TGG 0.595350 6.2:-19209560 MS.gene55614:intron
CACATGATTGTAGTGTCCGA+TGG 0.602575 6.2:-19208236 MS.gene55614:CDS
GTCGTTGGTTTCTAAACTGG+CGG 0.606694 6.2:+19208205 None:intergenic
GATGCAGGGTAGCTCTGCAT+AGG 0.608266 6.2:+19207903 None:intergenic
CCATTTCCACTACCATACAA+AGG 0.611279 6.2:+19207684 None:intergenic
CTCAAATGTTGAATCTGCTG+CGG 0.611992 6.2:-19208162 MS.gene55614:CDS
GCCTCTCTCGATGAATCCAA+AGG 0.612065 6.2:-19208086 MS.gene55614:CDS
TTACTAGTAGTAGATGAAGA+AGG 0.612171 6.2:+19207627 None:intergenic
GAATTATCCATGAAGATGCA+GGG 0.627674 6.2:+19207889 None:intergenic
CACAGATATTGGACCAACGG+TGG 0.629754 6.2:-19208326 MS.gene55614:CDS
TGAATCTGAGAAGAACTCAC+CGG 0.630634 6.2:+19209580 None:intergenic
TGTCACAGATATTGGACCAA+CGG 0.638912 6.2:-19208329 MS.gene55614:CDS
ACTGGCGGTCGGAATTCCAT+CGG 0.649455 6.2:+19208220 None:intergenic
TTGATCCTACTTCAATGCAG+TGG 0.649462 6.2:-19207794 MS.gene55614:CDS
GTGACAAACGGTCATACTCG+AGG 0.662893 6.2:-19207963 MS.gene55614:CDS
GAAATGTTGCTGTCGGTGCA+GGG 0.663844 6.2:-19208295 MS.gene55614:CDS
ACTACAACGTAAATCAACCT+CGG 0.680110 6.2:-19208367 MS.gene55614:CDS
CAACTCCGACAGAAATGCCG+AGG 0.680790 6.2:+19208350 None:intergenic
GACTCTTCTAGGTACCAACA+TGG 0.687547 6.2:-19208185 MS.gene55614:CDS
ACAATGAGAAATGTTGCTGT+CGG 0.691886 6.2:-19208302 MS.gene55614:CDS
CATCGGACACTACAATCATG+TGG 0.695881 6.2:+19208237 None:intergenic
CAATTGTAGAGAAAATGGAG+AGG 0.705347 6.2:-19208012 MS.gene55614:CDS
AAAAGTGAACACAAGCACTG+TGG 0.727270 6.2:-19208504 MS.gene55614:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTATTTTTGTTGTAT+TGG - chr6.2:19207767-19207786 MS.gene55614:CDS 10.0%
!!! TTTTTTATTTTTGTTGTATT+GGG - chr6.2:19207768-19207787 MS.gene55614:CDS 10.0%
!! AATTTAAATGTTTCAAAGAT+TGG + chr6.2:19207809-19207828 None:intergenic 15.0%
!! ATAAAAAAAACTCAAGAATA+TGG - chr6.2:19207872-19207891 MS.gene55614:CDS 15.0%
!! TAAAAAAACAACATAAACAA+TGG + chr6.2:19207730-19207749 None:intergenic 15.0%
!! TTTCATAAATATAACATGAT+TGG - chr6.2:19208246-19208265 MS.gene55614:CDS 15.0%
!!! TAAATTTGTTTAATTTTGCT+TGG - chr6.2:19208166-19208185 MS.gene55614:CDS 15.0%
!! AATTTAAGAAACTGAGTTTA+AGG - chr6.2:19208018-19208037 MS.gene55614:CDS 20.0%
!!! TTAAGAGTATTTGATCTATA+TGG - chr6.2:19207830-19207849 MS.gene55614:CDS 20.0%
! AAGTCATGAAGAATAAAGTT+TGG + chr6.2:19208575-19208594 None:intergenic 25.0%
! AATGGTATTGTCCTAAAATT+TGG - chr6.2:19209105-19209124 MS.gene55614:intron 25.0%
! ACAACATAAACAATGGTTAT+TGG + chr6.2:19207723-19207742 None:intergenic 25.0%
! CAACATAAACAATGGTTATT+GGG + chr6.2:19207722-19207741 None:intergenic 25.0%
! GATAAAATGAGTATTTACCA+TGG + chr6.2:19207684-19207703 None:intergenic 25.0%
! TAATTCCAATGAATCAAAGT+TGG - chr6.2:19209352-19209371 MS.gene55614:intron 25.0%
! TTTAGGTGTTCAAATGATAA+TGG - chr6.2:19209087-19209106 MS.gene55614:intron 25.0%
!!! TTATTTTTGTTGTATTGGGT+TGG - chr6.2:19207772-19207791 MS.gene55614:CDS 25.0%
AAAAACCATAAAATTCGACG+TGG + chr6.2:19208495-19208514 None:intergenic 30.0%
AATAGTTGTATCTCAGGTAA+TGG - chr6.2:19209618-19209637 MS.gene55614:CDS 30.0%
ACTAGTAATAGTTGTATCTC+AGG - chr6.2:19209612-19209631 MS.gene55614:CDS 30.0%
AGGTTTATACCTATTCTGTT+CGG + chr6.2:19209304-19209323 None:intergenic 30.0%
ATTTACCATGGTTGTAGAAT+TGG + chr6.2:19207672-19207691 None:intergenic 30.0%
GATCTGATTCATGTAAACAA+TGG - chr6.2:19207894-19207913 MS.gene55614:CDS 30.0%
GGTAACAATTGTAGAGAAAA+TGG - chr6.2:19209207-19209226 MS.gene55614:intron 30.0%
GTATTGTCCTAAAATTTGGT+CGG - chr6.2:19209109-19209128 MS.gene55614:intron 30.0%
TAGTGAGTTTGACAAAATCA+CGG - chr6.2:19208355-19208374 MS.gene55614:CDS 30.0%
TATTGTCCTAAAATTTGGTC+GGG - chr6.2:19209110-19209129 MS.gene55614:intron 30.0%
TGTGAAATAGACTGAAATTG+TGG - chr6.2:19208278-19208297 MS.gene55614:CDS 30.0%
TTACTAGTAGTAGATGAAGA+AGG + chr6.2:19209600-19209619 None:intergenic 30.0%
TTGTTCCAACTTTGATTCAT+TGG + chr6.2:19209360-19209379 None:intergenic 30.0%
! AACATTTTCACACCAAACAT+TGG - chr6.2:19209480-19209499 MS.gene55614:intron 30.0%
! GATTTTGTCAAACTCACTAT+GGG + chr6.2:19208354-19208373 None:intergenic 30.0%
! TGATTTTGTCAAACTCACTA+TGG + chr6.2:19208355-19208374 None:intergenic 30.0%
! TTGGAACAATGTTACTTCTA+TGG - chr6.2:19209371-19209390 MS.gene55614:intron 30.0%
!! AAGATTAAGCATTGAACCTT+TGG + chr6.2:19209157-19209176 None:intergenic 30.0%
!! TTCTCAATGTTTTGAGTATG+AGG + chr6.2:19208667-19208686 None:intergenic 30.0%
AAATGGAGAGGAAGAATCAT+CGG - chr6.2:19209224-19209243 MS.gene55614:intron 35.0%
AAGAGAAATGTTGATGCAAG+TGG - chr6.2:19209186-19209205 MS.gene55614:intron 35.0%
AAGTAGGATCAATGCCATAA+GGG + chr6.2:19209422-19209441 None:intergenic 35.0%
AATGTGTCCATAGGTTCAAA+TGG - chr6.2:19209564-19209583 MS.gene55614:CDS 35.0%
ACAAATTGCAAGCCAATGTT+TGG + chr6.2:19209495-19209514 None:intergenic 35.0%
ACAATGAGAAATGTTGCTGT+CGG - chr6.2:19208922-19208941 MS.gene55614:intron 35.0%
ACTACAACGTAAATCAACCT+CGG - chr6.2:19208857-19208876 MS.gene55614:intron 35.0%
AGCTGTCTTATGAAAGTAGT+TGG - chr6.2:19208048-19208067 MS.gene55614:CDS 35.0%
ATTCAACATTTGAGCCATGT+TGG + chr6.2:19209056-19209075 None:intergenic 35.0%
CAATTGTAGAGAAAATGGAG+AGG - chr6.2:19209212-19209231 MS.gene55614:intron 35.0%
GAATTATCCATGAAGATGCA+GGG + chr6.2:19209338-19209357 None:intergenic 35.0%
TATGGGTAATTCCATAAACC+AGG + chr6.2:19208337-19208356 None:intergenic 35.0%
TATTCGAATCCGAACAGAAT+AGG - chr6.2:19209292-19209311 MS.gene55614:intron 35.0%
TGATTCATGTAAACAATGGC+TGG - chr6.2:19207898-19207917 MS.gene55614:CDS 35.0%
TGCAGTAACTCAAAGCATAA+AGG - chr6.2:19208631-19208650 MS.gene55614:intron 35.0%
TTGCATCAACATTTCTCTTG+TGG + chr6.2:19209185-19209204 None:intergenic 35.0%
! AAGCACTGTGGAAGATAATA+TGG - chr6.2:19208732-19208751 MS.gene55614:intron 35.0%
! AATTTGTTCCTGCATCAAAC+AGG - chr6.2:19209508-19209527 MS.gene55614:intron 35.0%
! ATGTACCACGTCGAATTTTA+TGG - chr6.2:19208487-19208506 MS.gene55614:CDS 35.0%
! CAATCTTGTCTGGTTTCTTT+AGG + chr6.2:19208786-19208805 None:intergenic 35.0%
! CATTTTCCCGACCAAATTTT+AGG + chr6.2:19209119-19209138 None:intergenic 35.0%
!! TCTTCTAGTTTCATGCTCTT+TGG - chr6.2:19207611-19207630 MS.gene55614:CDS 35.0%
AATGCAGCCATTTGAACCTA+TGG + chr6.2:19209574-19209593 None:intergenic 40.0%
AGGAATGGAACACCTTTGTA+TGG - chr6.2:19209528-19209547 MS.gene55614:intron 40.0%
ATGCAGATGTGTAACCCTTA+TGG - chr6.2:19209405-19209424 MS.gene55614:intron 40.0%
ATTTCTCATTGTTCCACCGT+TGG + chr6.2:19208914-19208933 None:intergenic 40.0%
CCATTTCCACTACCATACAA+AGG + chr6.2:19209543-19209562 None:intergenic 40.0%
CTCAAATGTTGAATCTGCTG+CGG - chr6.2:19209062-19209081 MS.gene55614:intron 40.0%
GAAGTAGGATCAATGCCATA+AGG + chr6.2:19209423-19209442 None:intergenic 40.0%
GCTCTTTGGTAAGAAGATTC+CGG - chr6.2:19207625-19207644 MS.gene55614:CDS 40.0%
GGAAATGGAAATGTGTCCAT+AGG - chr6.2:19209555-19209574 MS.gene55614:intron 40.0%
GGAATTATCCATGAAGATGC+AGG + chr6.2:19209339-19209358 None:intergenic 40.0%
GGACATTGAACAATCTTGTC+TGG + chr6.2:19208796-19208815 None:intergenic 40.0%
GGTAATTCCATAAACCAGGA+GGG + chr6.2:19208333-19208352 None:intergenic 40.0%
TAGAAACCAACGACTCTTCT+AGG - chr6.2:19209028-19209047 MS.gene55614:intron 40.0%
TGAATCTGAGAAGAACTCAC+CGG + chr6.2:19207647-19207666 None:intergenic 40.0%
TGTCACAGATATTGGACCAA+CGG - chr6.2:19208895-19208914 MS.gene55614:intron 40.0%
TGTGTATCGTCTGTGACAAA+CGG - chr6.2:19209249-19209268 MS.gene55614:intron 40.0%
TTGATCCTACTTCAATGCAG+TGG - chr6.2:19209430-19209449 MS.gene55614:intron 40.0%
! AAAAGTGAACACAAGCACTG+TGG - chr6.2:19208720-19208739 MS.gene55614:intron 40.0%
! CATGTGTGTTTTCCAAGGAT+TGG + chr6.2:19209648-19209667 None:intergenic 40.0%
! GTGTCGAAACTTTTGCATCT+CGG + chr6.2:19208817-19208836 None:intergenic 40.0%
! TTGAATCTGCTGCGGTTTTT+AGG - chr6.2:19209070-19209089 MS.gene55614:intron 40.0%
!! AGAGTCGTTGGTTTCTAAAC+TGG + chr6.2:19209025-19209044 None:intergenic 40.0%
!! CCTTTGTATGGTAGTGGAAA+TGG - chr6.2:19209540-19209559 MS.gene55614:intron 40.0%
AACATAAGAGATAGCCCTCC+TGG - chr6.2:19208316-19208335 MS.gene55614:CDS 45.0%
ACCTTTGGATTCATCGAGAG+AGG + chr6.2:19209142-19209161 None:intergenic 45.0%
ATCAACCTCGGCATTTCTGT+CGG - chr6.2:19208869-19208888 MS.gene55614:intron 45.0%
CACATGATTGTAGTGTCCGA+TGG - chr6.2:19208988-19209007 MS.gene55614:intron 45.0%
CATCGGACACTACAATCATG+TGG + chr6.2:19208990-19209009 None:intergenic 45.0%
GACTCTTCTAGGTACCAACA+TGG - chr6.2:19209039-19209058 MS.gene55614:intron 45.0%
GGAACACCTTTGTATGGTAG+TGG - chr6.2:19209534-19209553 MS.gene55614:intron 45.0%
GGGTAATTCCATAAACCAGG+AGG + chr6.2:19208334-19208353 None:intergenic 45.0%
GGTGAGTTCTTCTCAGATTC+AGG - chr6.2:19207646-19207665 MS.gene55614:CDS 45.0%
GTCGGAGTTGTCACAGATAT+TGG - chr6.2:19208887-19208906 MS.gene55614:intron 45.0%
GTTCCATTCCTGTTTGATGC+AGG + chr6.2:19209519-19209538 None:intergenic 45.0%
GTTCCTGCATCAAACAGGAA+TGG - chr6.2:19209513-19209532 MS.gene55614:intron 45.0%
TCAGGCCAATTCTACAACCA+TGG - chr6.2:19207664-19207683 MS.gene55614:CDS 45.0%
TGACACCACTGCATTGAAGT+AGG + chr6.2:19209438-19209457 None:intergenic 45.0%
TTGGTACCTAGAAGAGTCGT+TGG + chr6.2:19209037-19209056 None:intergenic 45.0%
TTGGTTTCTAAACTGGCGGT+CGG + chr6.2:19209018-19209037 None:intergenic 45.0%
!! GTCGTTGGTTTCTAAACTGG+CGG + chr6.2:19209022-19209041 None:intergenic 45.0%
!!! AATAAAAAAATGTTTTTTTT+TGG - chr6.2:19207940-19207959 MS.gene55614:CDS 5.0%
AGAAATGTTGCTGTCGGTGC+AGG - chr6.2:19208928-19208947 MS.gene55614:intron 50.0%
AGAGCTACCCTGCATCTTCA+TGG - chr6.2:19209328-19209347 MS.gene55614:intron 50.0%
ATGTTTGTAACCGCAGCCCT+CGG + chr6.2:19209465-19209484 None:intergenic 50.0%
CACAGATATTGGACCAACGG+TGG - chr6.2:19208898-19208917 MS.gene55614:intron 50.0%
GAAATGTTGCTGTCGGTGCA+GGG - chr6.2:19208929-19208948 MS.gene55614:intron 50.0%
GAGATAGCCCTCCTGGTTTA+TGG - chr6.2:19208323-19208342 MS.gene55614:CDS 50.0%
GCCTCTCTCGATGAATCCAA+AGG - chr6.2:19209138-19209157 MS.gene55614:intron 50.0%
GTGACAAACGGTCATACTCG+AGG - chr6.2:19209261-19209280 MS.gene55614:intron 50.0%
! GGTAATGGCACACCAATCCT+TGG - chr6.2:19209633-19209652 MS.gene55614:CDS 50.0%
ACTGGCGGTCGGAATTCCAT+CGG + chr6.2:19209007-19209026 None:intergenic 55.0%
CAACTCCGACAGAAATGCCG+AGG + chr6.2:19208877-19208896 None:intergenic 55.0%
! GATGCAGGGTAGCTCTGCAT+AGG + chr6.2:19209324-19209343 None:intergenic 55.0%
TTGCTGTCGGTGCAGGGAGA+CGG - chr6.2:19208935-19208954 MS.gene55614:intron 60.0%
!! GCAGTGGTGTCACGCGCCGA+GGG - chr6.2:19209446-19209465 MS.gene55614:intron 70.0%
!! TGCAGTGGTGTCACGCGCCG+AGG - chr6.2:19209445-19209464 MS.gene55614:intron 70.0%
GTGTCACGCGCCGAGGGCTG+CGG - chr6.2:19209452-19209471 MS.gene55614:intron 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 19207578 19209668 19207578 ID=MS.gene55614
chr6.2 mRNA 19207578 19209668 19207578 ID=MS.gene55614.t1;Parent=MS.gene55614
chr6.2 exon 19209561 19209668 19209561 ID=MS.gene55614.t1.exon1;Parent=MS.gene55614.t1
chr6.2 CDS 19209561 19209668 19209561 ID=cds.MS.gene55614.t1;Parent=MS.gene55614.t1
chr6.2 exon 19207578 19208621 19207578 ID=MS.gene55614.t1.exon2;Parent=MS.gene55614.t1
chr6.2 CDS 19207578 19208621 19207578 ID=cds.MS.gene55614.t1;Parent=MS.gene55614.t1
Gene Sequence

>MS.gene55614

ATGAATGGTGAAGGTGACATGTTTGTTAAAGATTCTTCTAGTTTCATGCTCTTTGGTAAGAAGATTCCGGTGAGTTCTTCTCAGATTCAGGCCAATTCTACAACCATGGTAAATACTCATTTTATCATATTATATCATATACCCAATAACCATTGTTTATGTTGTTTTTTTATTTGAAAAAATTTAAGTATTTTTTATTTTTGTTGTATTGGGTTGGTATAATATTTTCCAATCTTTGAAACATTTAAATTTTTAAGAGTATTTGATCTATATGGTTTCTTTTTTAATATATTGATAAAAAAAACTCAAGAATATGGATCTGATTCATGTAAACAATGGCTGGTCTTAATTGTATGAATTCTAATAAAAAAATGTTTTTTTTTGGAAATTTATAGTTGAGAATATATGTTTATGTCAATACATACATACATATATAGATGAATTTAAGAAACTGAGTTTAAGGTTTGTTAAGCTGTCTTATGAAAGTAGTTGGTTTTTTAAATAAAATTAGATCTGTTGCATTTTTTATGATACACTTATATTATTTTTGTCTGAAATTGAGTTGTACTTTTGAAAGAAATTTAACTTTAAATTTGTTTAATTTTGCTTGGAGTATTAATCAAATCTTAAAAACGTTCAATGTTTAATCAATTACAAATAGATTTGTTTTTCATAAATATAACATGATTGGTTGAATGAATGTGAAATAGACTGAAATTGTGGCAGATTAGTTTTAGTAACATAAGAGATAGCCCTCCTGGTTTATGGAATTACCCATAGTGAGTTTGACAAAATCACGGTGACATGTTTGTTGAAGCTCGAAAGAGTAGATTTTTCTAAATTACAGTGACACGTGATTATGTCGAACTCATCGTCAATCTAAACATACGAAATGAAAGTTCTCATGTTATGTACCACGTCGAATTTTATGGTTTTTTATGTGAAAAATGAATATAACATTGATTTTGTTTCTTGTTTATTGTCAAATTTGTTGCCAAACTTTATTCTTCATGACTTGTCACTGATTATATAGTTTTTATTTTACAGATTTCTTGCAGTAACTCAAAGCATAAAGGAAATGATATGCCTCATACTCAAAACATTGAGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTGAACACAAGCACTGTGGAAGATAATATGGAAACTAGCAGCACAGATCAAGACAAAGTCCTAAAGAAACCAGACAAGATTGTTCAATGTCCGAGATGCAAAAGTTTCGACACAAAATTTTGTTATTTCAACAACTACAACGTAAATCAACCTCGGCATTTCTGTCGGAGTTGTCACAGATATTGGACCAACGGTGGAACAATGAGAAATGTTGCTGTCGGTGCAGGGAGACGGAAGAACAAACACATAGCTTCTCAATATCGCCACATGATTGTAGTGTCCGATGGAATTCCGACCGCCAGTTTAGAAACCAACGACTCTTCTAGGTACCAACATGGCTCAAATGTTGAATCTGCTGCGGTTTTTAGGTGTTCAAATGATAATGGTATTGTCCTAAAATTTGGTCGGGAAAATGCCTCTCTCGATGAATCCAAAGGTTCAATGCTTAATCTTATGAACCACAAGAGAAATGTTGATGCAAGTGGTAACAATTGTAGAGAAAATGGAGAGGAAGAATCATCGGTATGTGTATCGTCTGTGACAAACGGTCATACTCGAGGAAACGAGTTATTCGAATCCGAACAGAATAGGTATAAACCTATGCAGAGCTACCCTGCATCTTCATGGATAATTCCAATGAATCAAAGTTGGAACAATGTTACTTCTATGGTTCAATCATCAATGCAGATGTGTAACCCTTATGGCATTGATCCTACTTCAATGCAGTGGTGTCACGCGCCGAGGGCTGCGGTTACAAACATTTTCACACCAAACATTGGCTTGCAATTTGTTCCTGCATCAAACAGGAATGGAACACCTTTGTATGGTAGTGGAAATGGAAATGTGTCCATAGGTTCAAATGGCTGCATTTCACCTTCTTCATCTACTACTAGTAATAGTTGTATCTCAGGTAATGGCACACCAATCCTTGGAAAACACACATGA
Protein sequence

>MS.gene55614.t1

MNGEGDMFVKDSSSFMLFGKKIPVSSSQIQANSTTMISCSNSKHKGNDMPHTQNIEKSKNSSNEENESKVNTSTVEDNMETSSTDQDKVLKKPDKIVQCPRCKSFDTKFCYFNNYNVNQPRHFCRSCHRYWTNGGTMRNVAVGAGRRKNKHIASQYRHMIVVSDGIPTASLETNDSSRYQHGSNVESAAVFRCSNDNGIVLKFGRENASLDESKGSMLNLMNHKRNVDASGNNCRENGEEESSVCVSSVTNGHTRGNELFESEQNRYKPMQSYPASSWIIPMNQSWNNVTSMVQSSMQMCNPYGIDPTSMQWCHAPRAAVTNIFTPNIGLQFVPASNRNGTPLYGSGNGNVSIGSNGCISPSSSTTSNSCISGNGTPILGKHT