AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55643

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55643.t1 MTR_6g027690 75.926 486 41 7 1 472 1 424 0.0 623
MS.gene55643.t1 MTR_5g018850 33.146 178 107 3 301 467 1330 1506 2.48e-16 82.8
MS.gene55643.t1 MTR_4g132610 35.196 179 102 4 301 467 870 1046 1.05e-15 80.5
MS.gene55643.t1 MTR_3g088625 31.818 198 99 10 284 467 1289 1464 2.47e-15 79.7
MS.gene55643.t1 MTR_3g088625 31.818 198 99 10 284 467 1183 1358 2.67e-15 79.3
MS.gene55643.t1 MTR_7g088370 29.825 228 125 8 272 465 476 702 2.95e-15 79.0
MS.gene55643.t1 MTR_7g098390 34.783 161 86 5 300 445 519 675 6.18e-15 77.8
MS.gene55643.t1 MTR_8g078490 32.402 179 107 4 301 467 1076 1252 8.24e-15 77.8
MS.gene55643.t1 MTR_1g069570 31.250 160 93 4 300 445 563 719 1.04e-14 77.0
MS.gene55643.t1 MTR_1g012890 31.646 158 90 6 314 467 224 367 1.60e-14 75.5
MS.gene55643.t1 MTR_1g080340 34.146 164 84 5 300 445 402 559 6.73e-14 74.3
MS.gene55643.t1 MTR_8g078505 32.222 180 95 6 301 463 364 533 2.29e-13 72.4
MS.gene55643.t1 MTR_1g012910 29.032 155 92 6 317 467 530 670 1.89e-12 70.1
MS.gene55643.t1 MTR_1g012910 29.032 155 92 6 317 467 367 507 3.11e-12 68.9
MS.gene55643.t1 MTR_6g059310 27.619 210 122 7 275 470 63 256 4.74e-12 67.8
MS.gene55643.t1 MTR_6g059310 27.619 210 122 7 275 470 63 256 5.51e-12 67.4
MS.gene55643.t1 MTR_4g010830 26.667 240 122 9 277 467 745 979 6.57e-12 68.6
MS.gene55643.t1 MTR_1g035420 24.545 220 131 6 275 459 440 659 2.29e-11 66.6
MS.gene55643.t1 MTR_1g098000 27.941 204 109 7 278 463 47 230 8.14e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55643.t1 AT3G03750 55.804 224 78 4 270 472 131 354 4.90e-73 234
MS.gene55643.t1 AT3G03750 35.484 124 65 3 28 141 28 146 4.05e-14 73.9
MS.gene55643.t1 AT3G03750 51.339 224 72 5 270 472 131 338 7.53e-62 205
MS.gene55643.t1 AT3G03750 35.484 124 65 3 28 141 28 146 2.81e-14 74.3
MS.gene55643.t1 AT2G23740 32.609 184 103 5 301 467 1195 1374 1.25e-16 83.6
MS.gene55643.t1 AT2G23740 32.609 184 103 5 301 467 1202 1381 1.29e-16 83.6
MS.gene55643.t1 AT2G23740 32.609 184 103 5 301 467 1202 1381 1.29e-16 83.6
MS.gene55643.t1 AT2G23740 32.609 184 103 5 301 467 1202 1381 1.29e-16 83.6
MS.gene55643.t1 AT1G04050 32.716 162 91 4 297 445 436 592 5.96e-15 77.8
MS.gene55643.t1 AT1G04050 31.746 189 109 5 272 445 513 696 9.07e-15 77.4
MS.gene55643.t1 AT1G04050 31.746 189 109 5 272 445 513 696 9.07e-15 77.4
MS.gene55643.t1 AT1G73100 28.870 239 123 10 276 467 430 668 5.77e-14 74.7
MS.gene55643.t1 AT4G30860 27.686 242 135 9 245 467 244 464 1.34e-13 73.2
MS.gene55643.t1 AT3G04380 32.278 158 92 3 300 444 279 434 2.29e-13 72.4
MS.gene55643.t1 AT3G04380 32.278 158 92 3 300 444 252 407 2.31e-13 72.4
MS.gene55643.t1 AT3G04380 32.278 158 92 3 300 444 252 407 2.33e-13 72.4
MS.gene55643.t1 AT3G04380 32.278 158 92 3 300 444 279 434 2.35e-13 72.4
MS.gene55643.t1 AT3G04380 32.278 158 92 3 300 444 263 418 2.42e-13 72.4
MS.gene55643.t1 AT3G04380 32.278 158 92 3 300 444 236 391 2.60e-13 72.0
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 458 610 1.28e-12 70.5
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 458 610 1.28e-12 70.5
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 458 610 1.28e-12 70.5
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 458 610 1.28e-12 70.5
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 438 590 1.39e-12 70.5
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 527 679 2.01e-12 70.1
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 527 679 2.01e-12 70.1
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 527 679 2.01e-12 70.1
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 527 679 2.01e-12 70.1
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 550 702 2.04e-12 70.1
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 550 702 2.04e-12 70.1
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 507 659 2.33e-12 69.7
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 507 659 2.33e-12 69.7
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 507 659 2.33e-12 69.7
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 507 659 2.33e-12 69.7
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 530 682 2.34e-12 69.7
MS.gene55643.t1 AT5G43990 31.447 159 90 4 300 445 530 682 2.34e-12 69.7
MS.gene55643.t1 AT5G42400 31.724 145 79 7 325 467 1261 1387 2.52e-11 67.0
MS.gene55643.t1 AT5G42400 31.724 145 79 7 325 467 1261 1387 2.52e-11 67.0
MS.gene55643.t1 AT5G42400 31.724 145 79 7 325 467 1261 1387 2.52e-11 67.0
MS.gene55643.t1 AT5G42400 31.724 145 79 7 325 467 1261 1387 2.52e-11 67.0
MS.gene55643.t1 AT5G42400 31.724 145 79 7 325 467 1261 1387 2.52e-11 67.0
MS.gene55643.t1 AT5G42400 31.724 145 79 7 325 467 1261 1387 2.52e-11 67.0
MS.gene55643.t1 AT5G42400 31.724 145 79 7 325 467 1261 1387 2.52e-11 67.0
MS.gene55643.t1 AT5G42400 31.724 145 79 7 325 467 1261 1387 2.52e-11 67.0
MS.gene55643.t1 AT4G13460 27.488 211 126 6 275 459 441 650 2.58e-11 66.2
MS.gene55643.t1 AT4G13460 27.488 211 126 6 275 459 441 650 2.58e-11 66.2
MS.gene55643.t1 AT1G76710 27.751 209 111 8 278 467 41 228 3.13e-11 65.9
MS.gene55643.t1 AT1G76710 27.751 209 111 8 278 467 41 228 3.13e-11 65.9
MS.gene55643.t1 AT1G76710 27.751 209 111 8 278 467 41 228 3.48e-11 65.9
MS.gene55643.t1 AT1G76710 27.751 209 111 8 278 467 41 228 4.00e-11 65.5

Find 151 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGGTGTTTGTGAAAA+TGG 0.149172 6.2:+19890453 MS.gene55643:CDS
GGGTTAGATATGGTAGAATT+AGG 0.206484 6.2:-19890146 None:intergenic
AGCACCCCATGGTTGATAAT+TGG 0.206933 6.2:-19890370 None:intergenic
ATGGGGTTTGTTTGCGAATC+AGG 0.258812 6.2:+19891052 MS.gene55643:CDS
TTTGATGTCGGCTGTGAAAA+TGG 0.282379 6.2:+19890765 MS.gene55643:CDS
AATGGGTCAGTGGGAGGTGG+TGG 0.285953 6.2:+19890471 MS.gene55643:CDS
ATTGCTGCTACTCGATTTCC+TGG 0.299858 6.2:-19890058 None:intergenic
TGATGATTTGGGTGAGTTTA+CGG 0.314004 6.2:-19890209 None:intergenic
GGTGTGGTGGTGGGAAAGGA+TGG 0.325731 6.2:+19891033 MS.gene55643:CDS
GCACCCCATGGTTGATAATT+GGG 0.332864 6.2:-19890369 None:intergenic
TGCGACGGAGGGTGATGATT+TGG 0.335813 6.2:-19890221 None:intergenic
GGGTCAGTGGGAGGTGGTGG+GGG 0.342021 6.2:+19890474 MS.gene55643:CDS
TGTGGGCTGGGTTGTTTATG+TGG 0.352457 6.2:+19890951 MS.gene55643:CDS
GTGGGAGGGAGTGTGGGAAT+AGG 0.355883 6.2:+19890970 MS.gene55643:CDS
GGTTAGATATGGTAGAATTA+GGG 0.360685 6.2:-19890145 None:intergenic
TTGTTGATGGTGTTGAGAAA+TGG 0.363547 6.2:-19890282 None:intergenic
TGTTTATGTGGGAGGGAGTG+TGG 0.364351 6.2:+19890963 MS.gene55643:CDS
GTGGGCTGGGTTGTTTATGT+GGG 0.366645 6.2:+19890952 MS.gene55643:CDS
TCATCATCGTCAACCGTTCT+AGG 0.372941 6.2:-19890834 None:intergenic
TGGGTCAGTGGGAGGTGGTG+GGG 0.373860 6.2:+19890473 MS.gene55643:CDS
TGCAACAGCCTTTCTTGCCT+TGG 0.379800 6.2:+19893102 MS.gene55643:CDS
TGGGAGGGAGTGTGGGAATA+GGG 0.381770 6.2:+19890971 MS.gene55643:CDS
ATGGGTCTGTGGTAGATGGT+GGG 0.387353 6.2:+19890682 MS.gene55643:CDS
CGCATGAATGATTTACAAAC+CGG 0.393320 6.2:-19892927 None:intergenic
AATTCTGTCATTTCAGATGA+TGG 0.394308 6.2:+19890402 MS.gene55643:CDS
AAGGTGTCTGTGATGATGGT+GGG 0.397856 6.2:+19890568 MS.gene55643:CDS
TTGAAGGTGTTTGTGAAAAT+GGG 0.399091 6.2:+19890454 MS.gene55643:CDS
ATGTTAGGGTTAAGATTGTA+TGG 0.402236 6.2:+19891012 MS.gene55643:intron
TTTGATGGGGTTGATGGTAT+TGG 0.404345 6.2:+19890921 MS.gene55643:CDS
GTGTGGTGGTGGGAAAGGAT+GGG 0.406058 6.2:+19891034 MS.gene55643:CDS
ATTGGAAGAGAGTGTGGGCT+GGG 0.407013 6.2:+19890939 MS.gene55643:CDS
GATCATGGGTCAGTGAGTTT+TGG 0.410291 6.2:+19890534 MS.gene55643:CDS
ACTCACTGACCCATGATCAT+TGG 0.410621 6.2:-19890529 None:intergenic
AATGGGAAGGTGGGAGGCAG+TGG 0.411038 6.2:+19890783 MS.gene55643:CDS
TGTGGTGGTGGGAAAGGATG+GGG 0.412443 6.2:+19891035 MS.gene55643:CDS
TTGATCGCTCTAGGCGGAAT+TGG 0.412949 6.2:-19890723 None:intergenic
GTGTATAGAAAGTAGGAGTA+AGG 0.416895 6.2:-19890318 None:intergenic
AAGATTGTATGGTGTGGTGG+TGG 0.420334 6.2:+19891023 MS.gene55643:intron
ATTCCGCCGGTTGATGAAGT+TGG 0.420784 6.2:+19890612 MS.gene55643:CDS
TTCCGCCGGTTGATGAAGTT+GGG 0.426029 6.2:+19890613 MS.gene55643:CDS
TGTTGATGGTGTTGAGAAAT+GGG 0.426613 6.2:-19890281 None:intergenic
GTTTATGTGGGAGGGAGTGT+GGG 0.429146 6.2:+19890964 MS.gene55643:CDS
GGAAGGTGTGTATAGAAAGT+AGG 0.432399 6.2:-19890325 None:intergenic
CCACCACCGCCCAATGATCA+TGG 0.436902 6.2:+19890519 MS.gene55643:CDS
ACAACAACATTATGATGAAC+TGG 0.439102 6.2:+19892795 MS.gene55643:CDS
GGCTGGGTTGTTTATGTGGG+AGG 0.444900 6.2:+19890955 MS.gene55643:CDS
GATGGGTCTGTGGTAGATGG+TGG 0.446491 6.2:+19890681 MS.gene55643:CDS
ACCGGCCCAACTTCATCAAC+CGG 0.447528 6.2:-19890618 None:intergenic
GATGATGGGTCGGTGAGATT+TGG 0.451262 6.2:+19890417 MS.gene55643:CDS
GAAGTTGGGCCGGTGAAGTT+TGG 0.452392 6.2:+19890627 MS.gene55643:CDS
GATGATGGGTCTGTGGTAGA+TGG 0.453639 6.2:+19890678 MS.gene55643:CDS
CTCACTGACCCATGATCATT+GGG 0.455864 6.2:-19890528 None:intergenic
GCGACGGAGGGTGATGATTT+GGG 0.460306 6.2:-19890220 None:intergenic
TGTGAAGGTGTCTGTGATGA+TGG 0.467165 6.2:+19890564 MS.gene55643:CDS
GTATGGTGTGGTGGTGGGAA+AGG 0.470460 6.2:+19891029 MS.gene55643:CDS
AATTATCAACCATGGGGTGC+TGG 0.471919 6.2:+19890372 MS.gene55643:CDS
GCTGGGTTGTTTATGTGGGA+GGG 0.473425 6.2:+19890956 MS.gene55643:CDS
GGGAAGGTGGGAGGCAGTGG+TGG 0.474291 6.2:+19890786 MS.gene55643:CDS
GCAGTGACACGGCCGCCCAT+TGG 0.475968 6.2:-19893082 None:intergenic
ATGGGTCAGTGGGAGGTGGT+GGG 0.475978 6.2:+19890472 MS.gene55643:CDS
TTTCAAGGTGTATGTGATGA+TGG 0.478220 6.2:+19890663 MS.gene55643:CDS
CTCAAACATGCCTTTCCTGA+TGG 0.478841 6.2:-19892868 None:intergenic
GAAGGTGTCTGTGATGATGG+TGG 0.479890 6.2:+19890567 MS.gene55643:CDS
GTAAGGGAACATCTTCCATC+AGG 0.484888 6.2:+19892853 MS.gene55643:CDS
TATAGAAAGTAGGAGTAAGG+AGG 0.488395 6.2:-19890315 None:intergenic
CCATGATCATTGGGCGGTGG+TGG 0.490387 6.2:-19890519 None:intergenic
GAGTTCTTGTTTCAATATGC+AGG 0.491591 6.2:+19891089 MS.gene55643:CDS
GATGATGACTCAGTGAGATT+TGG 0.499430 6.2:+19890849 MS.gene55643:CDS
GGGTCTGTGGTAGATGGTGG+GGG 0.502373 6.2:+19890684 MS.gene55643:CDS
GAAAATGGGTCAGTGGGAGG+TGG 0.507865 6.2:+19890468 MS.gene55643:CDS
CTCAAAGGTTCGCGAAGCGT+CGG 0.508842 6.2:-19890247 None:intergenic
AACTTTCAAGTGTCTTCTGA+GGG 0.512350 6.2:-19893132 None:intergenic
CAACTTTCAAGTGTCTTCTG+AGG 0.513305 6.2:-19893133 None:intergenic
ATAGAAAGTAGGAGTAAGGA+GGG 0.513373 6.2:-19890314 None:intergenic
GCAATGTTCCAAGGCAAGAA+AGG 0.514478 6.2:-19893110 None:intergenic
GAATCAGGTTGTTCGTAAAG+AGG 0.515528 6.2:+19891067 MS.gene55643:CDS
GCCGGTTGATGAAGTTGGGC+CGG 0.518021 6.2:+19890617 MS.gene55643:CDS
CAACCATGGGGTGCTGGAGA+GGG 0.524783 6.2:+19890378 MS.gene55643:CDS
AGGTGTCTGTGATGATGGTG+GGG 0.526062 6.2:+19890569 MS.gene55643:CDS
ATTCTGTCATTTCAGATGAT+GGG 0.526380 6.2:+19890403 MS.gene55643:CDS
CACCCCATGGTTGATAATTG+GGG 0.526836 6.2:-19890368 None:intergenic
TGGGTCTGTGGTAGATGGTG+GGG 0.527821 6.2:+19890683 MS.gene55643:CDS
TATTGGAAGAGAGTGTGGGC+TGG 0.532478 6.2:+19890938 MS.gene55643:CDS
TTCACCAATGCCGCCTAGAA+CGG 0.533827 6.2:+19890821 MS.gene55643:CDS
GGGTGTTGTGAGAGAGAATG+AGG 0.533858 6.2:-19890347 None:intergenic
AGTAATTTCACTAATTCCGC+CGG 0.536149 6.2:+19890599 MS.gene55643:CDS
AAATCAGGAAAAGGTCCAAT+GGG 0.543500 6.2:+19893067 MS.gene55643:CDS
TCAACCATGGGGTGCTGGAG+AGG 0.544302 6.2:+19890377 MS.gene55643:CDS
GGGCCGGTGAAGTTTGGTGT+TGG 0.548634 6.2:+19890633 MS.gene55643:CDS
AGTTGTGTGTGGGTTAGATA+TGG 0.548637 6.2:-19890156 None:intergenic
GGCTGTGAAAATGGGAAGGT+GGG 0.549330 6.2:+19890774 MS.gene55643:CDS
GCTATGGAGAAATCAGGAAA+AGG 0.549928 6.2:+19893058 MS.gene55643:CDS
TTTGTAAATCATTCATGCGA+TGG 0.552323 6.2:+19892931 MS.gene55643:CDS
TCAACCGTTCTAGGCGGCAT+TGG 0.553131 6.2:-19890825 None:intergenic
GTTAAGATTGTATGGTGTGG+TGG 0.553358 6.2:+19891020 MS.gene55643:intron
GGGTCGGTGAGATTTGGTGT+TGG 0.554917 6.2:+19890423 MS.gene55643:CDS
ATGGTGTTGAGAAATGGGAT+TGG 0.561886 6.2:-19890276 None:intergenic
TTGATGTCGGCTGTGAAAAT+GGG 0.561974 6.2:+19890766 MS.gene55643:CDS
AGCGATCAATGATGAGGGAT+CGG 0.563609 6.2:+19890737 MS.gene55643:CDS
AGATGTTCGCGAGTTGTGTG+TGG 0.571682 6.2:-19890167 None:intergenic
TGTGAAAATGGGAAGGTGGG+AGG 0.578139 6.2:+19890777 MS.gene55643:CDS
GAAAGGCTGTTGCAGTGACA+CGG 0.578224 6.2:-19893093 None:intergenic
GGTGTTGTGAGAGAGAATGA+GGG 0.579242 6.2:-19890346 None:intergenic
GTTTGTGAAAATGGGTCAGT+GGG 0.582712 6.2:+19890462 MS.gene55643:CDS
GAAATCAGGAAAAGGTCCAA+TGG 0.584950 6.2:+19893066 MS.gene55643:CDS
CCCTCATCATTGATCGCTCT+AGG 0.585223 6.2:-19890732 None:intergenic
AGGGTTAAGATTGTATGGTG+TGG 0.589173 6.2:+19891017 MS.gene55643:intron
CTTCTGAGGGCAATGTTCCA+AGG 0.591471 6.2:-19893119 None:intergenic
CATCCAACACCAAACTTCAC+CGG 0.591738 6.2:-19890636 None:intergenic
GATGGTATTGGAAGAGAGTG+TGG 0.592186 6.2:+19890933 MS.gene55643:CDS
AGATTGTATGGTGTGGTGGT+GGG 0.598218 6.2:+19891024 MS.gene55643:intron
GTAAATCATTCATGCGATGG+TGG 0.599638 6.2:+19892934 MS.gene55643:CDS
TTGTCTCCTCTGTGCTTCCG+TGG 0.600236 6.2:-19892776 None:intergenic
GGTGTCTGTGATGATGGTGG+GGG 0.600282 6.2:+19890570 MS.gene55643:CDS
ATGGTATTGGAAGAGAGTGT+GGG 0.600749 6.2:+19890934 MS.gene55643:CDS
TTCAAGGTGTATGTGATGAT+GGG 0.600792 6.2:+19890664 MS.gene55643:CDS
CACCACCGCCCAATGATCAT+GGG 0.601569 6.2:+19890520 MS.gene55643:CDS
CGGCTGTGAAAATGGGAAGG+TGG 0.602479 6.2:+19890773 MS.gene55643:CDS
TGTGAAAATGGGTCAGTGGG+AGG 0.603851 6.2:+19890465 MS.gene55643:CDS
TTGCTGCTACTCGATTTCCT+GGG 0.607135 6.2:-19890057 None:intergenic
GCGAAGCGTCGGAGATGCGA+CGG 0.607942 6.2:-19890236 None:intergenic
GACCCATGATCATTGGGCGG+TGG 0.608657 6.2:-19890522 None:intergenic
TGGGATTGGATGATTCTCAA+AGG 0.608658 6.2:-19890262 None:intergenic
GATGTTCGCGAGTTGTGTGT+GGG 0.616366 6.2:-19890166 None:intergenic
CCTAGAGCGATCAATGATGA+GGG 0.616958 6.2:+19890732 MS.gene55643:CDS
TATGATGAACTGGCATCGCG+TGG 0.618128 6.2:+19892805 MS.gene55643:CDS
GGAACATCTTCCATCAGGAA+AGG 0.618170 6.2:+19892858 MS.gene55643:CDS
TGTCATTTCAGATGATGGGT+CGG 0.619359 6.2:+19890407 MS.gene55643:CDS
AAGCGTCGGAGATGCGACGG+AGG 0.619688 6.2:-19890233 None:intergenic
GCCTAGAGCGATCAATGATG+AGG 0.620250 6.2:+19890731 MS.gene55643:CDS
AGCGTCGGAGATGCGACGGA+GGG 0.627600 6.2:-19890232 None:intergenic
AGGAAATCGAGTAGCAGCAA+TGG 0.633956 6.2:+19890060 MS.gene55643:CDS
TTGTGAGAGAGAATGAGGGA+AGG 0.639314 6.2:-19890342 None:intergenic
TTACCCTCTCCAGCACCCCA+TGG 0.643090 6.2:-19890381 None:intergenic
GACTCAGTGAGATTTGGTGT+GGG 0.645287 6.2:+19890855 MS.gene55643:CDS
GGTGTGGGATGTGAGTGTGA+AGG 0.647547 6.2:+19890870 MS.gene55643:CDS
CCACACAGATGAAGATACCC+AGG 0.648722 6.2:+19890040 None:intergenic
TGTATGTGATGATGGGTCTG+TGG 0.656140 6.2:+19890671 MS.gene55643:CDS
ACCCCATGGTTGATAATTGG+GGG 0.658176 6.2:-19890367 None:intergenic
TGTTTGTGAAAATGGGTCAG+TGG 0.667809 6.2:+19890461 MS.gene55643:CDS
TCAGGAAAAGGTCCAATGGG+CGG 0.668437 6.2:+19893070 MS.gene55643:CDS
GCATGAATGATTTACAAACC+GGG 0.668682 6.2:-19892926 None:intergenic
GGCCCAACTTCATCAACCGG+CGG 0.669512 6.2:-19890615 None:intergenic
TCATCGTCAACCGTTCTAGG+CGG 0.675310 6.2:-19890831 None:intergenic
TGACTCAGTGAGATTTGGTG+TGG 0.677273 6.2:+19890854 MS.gene55643:CDS
GGATCGGTGAGATTTGATGT+CGG 0.688756 6.2:+19890753 MS.gene55643:CDS
AGGTGAACTACTGACAACCA+CGG 0.715721 6.2:+19892759 MS.gene55643:intron
TGTCGGCTGTGAAAATGGGA+AGG 0.718334 6.2:+19890770 MS.gene55643:CDS
ACTGACCCATGATCATTGGG+CGG 0.720456 6.2:-19890525 None:intergenic
TCATCATTGATCGCTCTAGG+CGG 0.724077 6.2:-19890729 None:intergenic
TGACAACCACGGAAGCACAG+AGG 0.752462 6.2:+19892770 MS.gene55643:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTAATTTTTAGGTA+TGG + chr6.2:19891552-19891571 MS.gene55643:intron 10.0%
!!! TATGTAAAAAGTTACTTTAT+AGG + chr6.2:19892042-19892061 MS.gene55643:intron 15.0%
!!! TGTATTTAAGTTAATAGTTA+AGG + chr6.2:19892213-19892232 MS.gene55643:intron 15.0%
!! AAAACTTAATATTTCACTCA+AGG - chr6.2:19891931-19891950 None:intergenic 20.0%
!! AAACTTAATATTTCACTCAA+GGG - chr6.2:19891930-19891949 None:intergenic 20.0%
!! ATCTTAACAAGCTAATAATT+AGG - chr6.2:19891979-19891998 None:intergenic 20.0%
!! GATCAATTCTAAATTTCTAA+TGG - chr6.2:19891340-19891359 None:intergenic 20.0%
!! TCTTAACAAGCTAATAATTA+GGG - chr6.2:19891978-19891997 None:intergenic 20.0%
!! TTATCAAATATGAGTCTATT+TGG + chr6.2:19892312-19892331 MS.gene55643:intron 20.0%
!!! ATATTTTAGTATTTTTGCGT+AGG + chr6.2:19891189-19891208 MS.gene55643:intron 20.0%
!!! ATGCTTGTAAAATTAATTTG+CGG + chr6.2:19892721-19892740 MS.gene55643:intron 20.0%
!!! TAACTTAAATACAAAAGTAC+AGG - chr6.2:19892206-19892225 None:intergenic 20.0%
! ATGAAAAACCAGAAAATACT+TGG - chr6.2:19891756-19891775 None:intergenic 25.0%
! GACTAATATAGAGATTTGAA+AGG + chr6.2:19892251-19892270 MS.gene55643:intron 25.0%
! GTGATTGTTTGATTGATTAT+AGG + chr6.2:19891144-19891163 MS.gene55643:intron 25.0%
! TGATTATAGGATTGTAACAT+TGG + chr6.2:19891157-19891176 MS.gene55643:intron 25.0%
! TTAAAATGGGGTTAATGTTA+GGG + chr6.2:19890998-19891017 MS.gene55643:intron 25.0%
! TTTATACTATAGTAGGAACA+CGG + chr6.2:19892086-19892105 MS.gene55643:intron 25.0%
!! AATTTTACAAGCATTTGTGT+AGG - chr6.2:19892715-19892734 None:intergenic 25.0%
!! ATCAGAATTATTCACCTTTT+GGG - chr6.2:19891662-19891681 None:intergenic 25.0%
!! ATTTAGAATTGATCCGAATT+TGG + chr6.2:19891346-19891365 MS.gene55643:intron 25.0%
!! ATTTTACAAGCATTTGTGTA+GGG - chr6.2:19892714-19892733 None:intergenic 25.0%
!! CTTTAGTTCATAAGCATATA+TGG - chr6.2:19892578-19892597 None:intergenic 25.0%
!!! AGTGTATGTGTTTTTTTGAT+GGG + chr6.2:19890907-19890926 MS.gene55643:CDS 25.0%
!!! CAAAATTTTAGCACCAAATT+CGG - chr6.2:19891362-19891381 None:intergenic 25.0%
!!! GTATTTTCTGGTTTTTCATA+CGG + chr6.2:19891757-19891776 MS.gene55643:intron 25.0%
!!! TTATTAGCTTGTTAAGATGA+TGG + chr6.2:19891981-19892000 MS.gene55643:intron 25.0%
!!! TTTGTTTTCATAAGCTGTTT+CGG - chr6.2:19892443-19892462 None:intergenic 25.0%
AACATAGACGCAACAAAAAT+AGG + chr6.2:19892895-19892914 MS.gene55643:CDS 30.0%
AATACGTTGAAAACAGCTTA+TGG - chr6.2:19892408-19892427 None:intergenic 30.0%
ACAACAACATTATGATGAAC+TGG + chr6.2:19892795-19892814 MS.gene55643:CDS 30.0%
ATGTTAGGGTTAAGATTGTA+TGG + chr6.2:19891012-19891031 MS.gene55643:intron 30.0%
CAAATTGCAATATGTTGAGT+AGG + chr6.2:19892152-19892171 MS.gene55643:intron 30.0%
GGTTAGATATGGTAGAATTA+GGG - chr6.2:19890148-19890167 None:intergenic 30.0%
GTTAAAATGGGGTTAATGTT+AGG + chr6.2:19890997-19891016 MS.gene55643:intron 30.0%
TTAATATTTCACTCAAGGGA+AGG - chr6.2:19891926-19891945 None:intergenic 30.0%
TTATACTATAGTAGGAACAC+GGG + chr6.2:19892087-19892106 MS.gene55643:intron 30.0%
TTGAATTTGAACGTGGAATT+TGG + chr6.2:19891218-19891237 MS.gene55643:intron 30.0%
TTTGTAAATCATTCATGCGA+TGG + chr6.2:19892931-19892950 MS.gene55643:CDS 30.0%
! AAGTAAGCTCTTCATCTTTT+TGG - chr6.2:19893035-19893054 None:intergenic 30.0%
! AATTCTGTCATTTCAGATGA+TGG + chr6.2:19890402-19890421 MS.gene55643:CDS 30.0%
! ATTCTGTCATTTCAGATGAT+GGG + chr6.2:19890403-19890422 MS.gene55643:CDS 30.0%
! CATCAGAATTATTCACCTTT+TGG - chr6.2:19891663-19891682 None:intergenic 30.0%
! GAAATCATAAAGTGCTTGTT+TGG + chr6.2:19891420-19891439 MS.gene55643:intron 30.0%
! TTGTTAAGATGATGGTCTAT+AGG + chr6.2:19891989-19892008 MS.gene55643:intron 30.0%
! TTTGCTATGTTAAGGTGATT+GGG + chr6.2:19892634-19892653 MS.gene55643:intron 30.0%
! TTTTGTTCTACTTGAGAATG+TGG - chr6.2:19891871-19891890 None:intergenic 30.0%
!! AATTGATTTTGCCTTCTAAG+TGG - chr6.2:19892130-19892149 None:intergenic 30.0%
!! ATTGATTTTGCCTTCTAAGT+GGG - chr6.2:19892129-19892148 None:intergenic 30.0%
!! GATTGATTTGAATTTGAACG+TGG + chr6.2:19891211-19891230 MS.gene55643:intron 30.0%
!! TTATAGGTGCTCTAAGAAAT+CGG + chr6.2:19892058-19892077 MS.gene55643:intron 30.0%
!! TTGAAGGTGTTTGTGAAAAT+GGG + chr6.2:19890454-19890473 MS.gene55643:CDS 30.0%
!! TTTGAAGGTGTTTGTGAAAA+TGG + chr6.2:19890453-19890472 MS.gene55643:CDS 30.0%
!!! GAGTGTATGTGTTTTTTTGA+TGG + chr6.2:19890906-19890925 MS.gene55643:CDS 30.0%
!!! GTGTATGTGTTTTTTTGATG+GGG + chr6.2:19890908-19890927 MS.gene55643:CDS 30.0%
!!! GTGTTTTTGTGTTTTAGAGT+TGG + chr6.2:19891304-19891323 MS.gene55643:intron 30.0%
AAATCAGGAAAAGGTCCAAT+GGG + chr6.2:19893067-19893086 MS.gene55643:CDS 35.0%
AAGAACATAACAGACCCAAA+AGG + chr6.2:19891645-19891664 MS.gene55643:intron 35.0%
AATTTGAACGTGGAATTTGG+AGG + chr6.2:19891221-19891240 MS.gene55643:intron 35.0%
ACCTTAACATAGCAAACACT+AGG - chr6.2:19892630-19892649 None:intergenic 35.0%
AGTAATTTCACTAATTCCGC+CGG + chr6.2:19890599-19890618 MS.gene55643:CDS 35.0%
ATAGAAAGTAGGAGTAAGGA+GGG - chr6.2:19890317-19890336 None:intergenic 35.0%
CAAAAATAGGAAATGTTGCC+CGG + chr6.2:19892908-19892927 MS.gene55643:CDS 35.0%
CGCATGAATGATTTACAAAC+CGG - chr6.2:19892930-19892949 None:intergenic 35.0%
GAATAGGGTGAGTTAAAATG+GGG + chr6.2:19890986-19891005 MS.gene55643:intron 35.0%
GAATCATACCAACAAGTTGT+TGG - chr6.2:19891798-19891817 None:intergenic 35.0%
GCATGAATGATTTACAAACC+GGG - chr6.2:19892929-19892948 None:intergenic 35.0%
GGAATAGGGTGAGTTAAAAT+GGG + chr6.2:19890985-19891004 MS.gene55643:intron 35.0%
GGGTTAGATATGGTAGAATT+AGG - chr6.2:19890149-19890168 None:intergenic 35.0%
GTGCTTGTTTGGATATATGT+TGG + chr6.2:19891431-19891450 MS.gene55643:intron 35.0%
GTGTATAGAAAGTAGGAGTA+AGG - chr6.2:19890321-19890340 None:intergenic 35.0%
GTTTGGGAAACAACTTATGA+CGG + chr6.2:19892380-19892399 MS.gene55643:intron 35.0%
TATAGAAAGTAGGAGTAAGG+AGG - chr6.2:19890318-19890337 None:intergenic 35.0%
TGGCAATTGAAAATGTACAG+TGG - chr6.2:19891894-19891913 None:intergenic 35.0%
TTAACATAGCAAACACTAGG+AGG - chr6.2:19892627-19892646 None:intergenic 35.0%
TTCAAGGTGTATGTGATGAT+GGG + chr6.2:19890664-19890683 MS.gene55643:CDS 35.0%
TTTCAAGGTGTATGTGATGA+TGG + chr6.2:19890663-19890682 MS.gene55643:CDS 35.0%
TTTGGGAAACAACTTATGAC+GGG + chr6.2:19892381-19892400 MS.gene55643:intron 35.0%
! GAGTTCTTGTTTCAATATGC+AGG + chr6.2:19891089-19891108 MS.gene55643:CDS 35.0%
! GTCTGCTCTTTTAGTAGTAA+GGG + chr6.2:19892837-19892856 MS.gene55643:CDS 35.0%
! TACTTGGTGATCGAATTTAC+CGG - chr6.2:19891740-19891759 None:intergenic 35.0%
! TGATGATTTGGGTGAGTTTA+CGG - chr6.2:19890212-19890231 None:intergenic 35.0%
! TTCGATCACCAAGTATTTTC+TGG + chr6.2:19891745-19891764 MS.gene55643:intron 35.0%
!! ATAAGCGCTGATGTTATAAG+CGG + chr6.2:19892525-19892544 MS.gene55643:intron 35.0%
!! CTTTTAGCTATGGAGAAATC+AGG + chr6.2:19893052-19893071 MS.gene55643:CDS 35.0%
!! GAAGAGCTTACTTTTAGCTA+TGG + chr6.2:19893042-19893061 MS.gene55643:CDS 35.0%
!! GGGAGGTTTTATACTATAGT+AGG + chr6.2:19892079-19892098 MS.gene55643:intron 35.0%
!! GGTGTTGGATGTAATTTTCA+AGG + chr6.2:19890648-19890667 MS.gene55643:CDS 35.0%
!! GTTTGCTATGTTAAGGTGAT+TGG + chr6.2:19892633-19892652 MS.gene55643:intron 35.0%
!! TATAGGTGCTCTAAGAAATC+GGG + chr6.2:19892059-19892078 MS.gene55643:intron 35.0%
!! TCCTAGTGTTTGCTATGTTA+AGG + chr6.2:19892626-19892645 MS.gene55643:intron 35.0%
!! TGTTGATGGTGTTGAGAAAT+GGG - chr6.2:19890284-19890303 None:intergenic 35.0%
!! TTGATAATGTCACCATCTCA+GGG - chr6.2:19892299-19892318 None:intergenic 35.0%
!! TTGTTGATGGTGTTGAGAAA+TGG - chr6.2:19890285-19890304 None:intergenic 35.0%
!! TTTGATAATGTCACCATCTC+AGG - chr6.2:19892300-19892319 None:intergenic 35.0%
!!! TGTTTTTTTGATGGGGTTGA+TGG + chr6.2:19890915-19890934 MS.gene55643:CDS 35.0%
AAGCACTTGTGAGACTGTTT+GGG + chr6.2:19892364-19892383 MS.gene55643:intron 40.0%
AGGGTTAAGATTGTATGGTG+TGG + chr6.2:19891017-19891036 MS.gene55643:intron 40.0%
CTTTCGAAGCAAAAAAGCAG+AGG - chr6.2:19893008-19893027 None:intergenic 40.0%
GAAATCAGGAAAAGGTCCAA+TGG + chr6.2:19893066-19893085 MS.gene55643:CDS 40.0%
GATGATGACTCAGTGAGATT+TGG + chr6.2:19890849-19890868 MS.gene55643:CDS 40.0%
GCTATGGAGAAATCAGGAAA+AGG + chr6.2:19893058-19893077 MS.gene55643:CDS 40.0%
GGGAATAGGGTGAGTTAAAA+TGG + chr6.2:19890984-19891003 MS.gene55643:intron 40.0%
GTAAATCATTCATGCGATGG+TGG + chr6.2:19892934-19892953 MS.gene55643:CDS 40.0%
GTACAGGCAGTTTACATCTA+CGG - chr6.2:19892190-19892209 None:intergenic 40.0%
GTTAAGATTGTATGGTGTGG+TGG + chr6.2:19891020-19891039 MS.gene55643:intron 40.0%
GTTTGTGAAAATGGGTCAGT+GGG + chr6.2:19890462-19890481 MS.gene55643:CDS 40.0%
TCAAGGGAAGGTTGTCAAAA+TGG - chr6.2:19891914-19891933 None:intergenic 40.0%
TGGGATTGGATGATTCTCAA+AGG - chr6.2:19890265-19890284 None:intergenic 40.0%
TGTTTGTGAAAATGGGTCAG+TGG + chr6.2:19890461-19890480 MS.gene55643:CDS 40.0%
! AGATGATGGTCTATAGGTCA+AGG + chr6.2:19891995-19892014 MS.gene55643:intron 40.0%
! AGGGTTGTTGTTGTTGTTGA+TGG - chr6.2:19890298-19890317 None:intergenic 40.0%
! ATGGTATTGGAAGAGAGTGT+GGG + chr6.2:19890934-19890953 MS.gene55643:CDS 40.0%
! ATGGTGTTGAGAAATGGGAT+TGG - chr6.2:19890279-19890298 None:intergenic 40.0%
! CGTCTGCTCTTTTAGTAGTA+AGG + chr6.2:19892836-19892855 MS.gene55643:CDS 40.0%
! GAATCAGGTTGTTCGTAAAG+AGG + chr6.2:19891067-19891086 MS.gene55643:CDS 40.0%
! GATGATGGTCTATAGGTCAA+GGG + chr6.2:19891996-19892015 MS.gene55643:intron 40.0%
! GGAAGGTGTGTATAGAAAGT+AGG - chr6.2:19890328-19890347 None:intergenic 40.0%
! TGATAATGTCACCATCTCAG+GGG - chr6.2:19892298-19892317 None:intergenic 40.0%
! TGCGGTTTTCTGTGTGAAAA+AGG + chr6.2:19892739-19892758 MS.gene55643:intron 40.0%
! TTGATGTCGGCTGTGAAAAT+GGG + chr6.2:19890766-19890785 MS.gene55643:CDS 40.0%
! TTTGATGTCGGCTGTGAAAA+TGG + chr6.2:19890765-19890784 MS.gene55643:CDS 40.0%
!! AGTTGTGTGTGGGTTAGATA+TGG - chr6.2:19890159-19890178 None:intergenic 40.0%
!! GTTTTAGCAACCCACTTAGA+AGG + chr6.2:19892116-19892135 MS.gene55643:intron 40.0%
!! TGTCATTTCAGATGATGGGT+CGG + chr6.2:19890407-19890426 MS.gene55643:CDS 40.0%
!! TTTGATGGGGTTGATGGTAT+TGG + chr6.2:19890921-19890940 MS.gene55643:CDS 40.0%
!!! AGTTTTGGTGTTGGATGTGA+AGG + chr6.2:19890549-19890568 MS.gene55643:CDS 40.0%
!!! GGTGTTGGTTGTGATTTTGA+AGG + chr6.2:19890438-19890457 MS.gene55643:CDS 40.0%
AAGATTGTATGGTGTGGTGG+TGG + chr6.2:19891023-19891042 MS.gene55643:intron 45.0%
AATTATCAACCATGGGGTGC+TGG + chr6.2:19890372-19890391 MS.gene55643:CDS 45.0%
ACACCCCCAATTATCAACCA+TGG + chr6.2:19890364-19890383 MS.gene55643:CDS 45.0%
ACCCCCAATTATCAACCATG+GGG + chr6.2:19890366-19890385 MS.gene55643:CDS 45.0%
ACTCACTGACCCATGATCAT+TGG - chr6.2:19890532-19890551 None:intergenic 45.0%
AGATGGACCTGGATTGAACT+TGG - chr6.2:19891704-19891723 None:intergenic 45.0%
AGATTGTATGGTGTGGTGGT+GGG + chr6.2:19891024-19891043 MS.gene55643:intron 45.0%
AGCGATCAATGATGAGGGAT+CGG + chr6.2:19890737-19890756 MS.gene55643:CDS 45.0%
AGCTCTACCAAGTTCAATCC+AGG + chr6.2:19891694-19891713 MS.gene55643:intron 45.0%
AGGAAATCGAGTAGCAGCAA+TGG + chr6.2:19890060-19890079 MS.gene55643:CDS 45.0%
AGGTGAACTACTGACAACCA+CGG + chr6.2:19892759-19892778 MS.gene55643:intron 45.0%
AGTTCAATCCAGGTCCATCT+AGG + chr6.2:19891704-19891723 MS.gene55643:intron 45.0%
ATAGTAGGAACACGGGTCTT+TGG + chr6.2:19892094-19892113 MS.gene55643:intron 45.0%
ATTGCTGCTACTCGATTTCC+TGG - chr6.2:19890061-19890080 None:intergenic 45.0%
CAAGCACTTGTGAGACTGTT+TGG + chr6.2:19892363-19892382 MS.gene55643:intron 45.0%
CACCCCCAATTATCAACCAT+GGG + chr6.2:19890365-19890384 MS.gene55643:CDS 45.0%
CATCCAACACCAAACTTCAC+CGG - chr6.2:19890639-19890658 None:intergenic 45.0%
CCAACAAGTTGTTGGCAACA+AGG - chr6.2:19891790-19891809 None:intergenic 45.0%
CCTAGAGCGATCAATGATGA+GGG + chr6.2:19890732-19890751 MS.gene55643:CDS 45.0%
CCTTGTTGCCAACAACTTGT+TGG + chr6.2:19891787-19891806 MS.gene55643:intron 45.0%
CTCAAACATGCCTTTCCTGA+TGG - chr6.2:19892871-19892890 None:intergenic 45.0%
CTCACTGACCCATGATCATT+GGG - chr6.2:19890531-19890550 None:intergenic 45.0%
GCAATGTTCCAAGGCAAGAA+AGG - chr6.2:19893113-19893132 None:intergenic 45.0%
GGAACATCTTCCATCAGGAA+AGG + chr6.2:19892858-19892877 MS.gene55643:CDS 45.0%
GGATCGGTGAGATTTGATGT+CGG + chr6.2:19890753-19890772 MS.gene55643:CDS 45.0%
GTAAGGGAACATCTTCCATC+AGG + chr6.2:19892853-19892872 MS.gene55643:CDS 45.0%
GTCTCACAAGTGCTTGTGTT+AGG - chr6.2:19892359-19892378 None:intergenic 45.0%
GTTCAATCCAGGTCCATCTA+GGG + chr6.2:19891705-19891724 MS.gene55643:intron 45.0%
TCATCATCGTCAACCGTTCT+AGG - chr6.2:19890837-19890856 None:intergenic 45.0%
TCGAAGCAAAAAAGCAGAGG+CGG - chr6.2:19893005-19893024 None:intergenic 45.0%
TTCAATCCAGGTCCATCTAG+GGG + chr6.2:19891706-19891725 MS.gene55643:intron 45.0%
TTGCTGCTACTCGATTTCCT+GGG - chr6.2:19890060-19890079 None:intergenic 45.0%
TTGTGAGAGAGAATGAGGGA+AGG - chr6.2:19890345-19890364 None:intergenic 45.0%
! AAGCTGTTTCGGAGAGCTTA+TGG - chr6.2:19892432-19892451 None:intergenic 45.0%
! ATGGGGTTTGTTTGCGAATC+AGG + chr6.2:19891052-19891071 MS.gene55643:CDS 45.0%
! GATCATGGGTCAGTGAGTTT+TGG + chr6.2:19890534-19890553 MS.gene55643:CDS 45.0%
! GATGGTATTGGAAGAGAGTG+TGG + chr6.2:19890933-19890952 MS.gene55643:CDS 45.0%
! GGTGTTGTGAGAGAGAATGA+GGG - chr6.2:19890349-19890368 None:intergenic 45.0%
! TCATCATTGATCGCTCTAGG+CGG - chr6.2:19890732-19890751 None:intergenic 45.0%
!! AAGGTGTCTGTGATGATGGT+GGG + chr6.2:19890568-19890587 MS.gene55643:CDS 45.0%
!! ACCCCATGGTTGATAATTGG+GGG - chr6.2:19890370-19890389 None:intergenic 45.0%
!! ACGGAGTGTTTTGCAGGTTA+GGG - chr6.2:19890193-19890212 None:intergenic 45.0%
!! AGCACCCCATGGTTGATAAT+TGG - chr6.2:19890373-19890392 None:intergenic 45.0%
!! CACCCCATGGTTGATAATTG+GGG - chr6.2:19890371-19890390 None:intergenic 45.0%
!! GACTCAGTGAGATTTGGTGT+GGG + chr6.2:19890855-19890874 MS.gene55643:CDS 45.0%
!! GAGTTTACGGAGTGTTTTGC+AGG - chr6.2:19890199-19890218 None:intergenic 45.0%
!! GCACCCCATGGTTGATAATT+GGG - chr6.2:19890372-19890391 None:intergenic 45.0%
!! TACGGAGTGTTTTGCAGGTT+AGG - chr6.2:19890194-19890213 None:intergenic 45.0%
!! TGACTCAGTGAGATTTGGTG+TGG + chr6.2:19890854-19890873 MS.gene55643:CDS 45.0%
!! TGTATGTGATGATGGGTCTG+TGG + chr6.2:19890671-19890690 MS.gene55643:CDS 45.0%
!! TGTGAAGGTGTCTGTGATGA+TGG + chr6.2:19890564-19890583 MS.gene55643:CDS 45.0%
!!! CAATTTTATATTTAATTTTT+AGG + chr6.2:19891547-19891566 MS.gene55643:intron 5.0%
AAGCAAAAAAGCAGAGGCGG+GGG - chr6.2:19893002-19893021 None:intergenic 50.0%
ACTGACCCATGATCATTGGG+CGG - chr6.2:19890528-19890547 None:intergenic 50.0%
AGATGTTCGCGAGTTGTGTG+TGG - chr6.2:19890170-19890189 None:intergenic 50.0%
ATGGGTCTGTGGTAGATGGT+GGG + chr6.2:19890682-19890701 MS.gene55643:CDS 50.0%
CCCTCATCATTGATCGCTCT+AGG - chr6.2:19890735-19890754 None:intergenic 50.0%
CGAAGCAAAAAAGCAGAGGC+GGG - chr6.2:19893004-19893023 None:intergenic 50.0%
GAAAGGCTGTTGCAGTGACA+CGG - chr6.2:19893096-19893115 None:intergenic 50.0%
GAAGCAAAAAAGCAGAGGCG+GGG - chr6.2:19893003-19893022 None:intergenic 50.0%
GATGTTCGCGAGTTGTGTGT+GGG - chr6.2:19890169-19890188 None:intergenic 50.0%
GCCTAGAGCGATCAATGATG+AGG + chr6.2:19890731-19890750 MS.gene55643:CDS 50.0%
GCTGGGTTGTTTATGTGGGA+GGG + chr6.2:19890956-19890975 MS.gene55643:CDS 50.0%
GGCTGTGAAAATGGGAAGGT+GGG + chr6.2:19890774-19890793 MS.gene55643:CDS 50.0%
GGTGATCGAATTTACCGGAC+TGG - chr6.2:19891735-19891754 None:intergenic 50.0%
TATGATGAACTGGCATCGCG+TGG + chr6.2:19892805-19892824 MS.gene55643:CDS 50.0%
TCAGGAAAAGGTCCAATGGG+CGG + chr6.2:19893070-19893089 MS.gene55643:CDS 50.0%
TGCAACAGCCTTTCTTGCCT+TGG + chr6.2:19893102-19893121 MS.gene55643:CDS 50.0%
TGTGAAAATGGGAAGGTGGG+AGG + chr6.2:19890777-19890796 MS.gene55643:CDS 50.0%
TGTGAAAATGGGTCAGTGGG+AGG + chr6.2:19890465-19890484 MS.gene55643:CDS 50.0%
TGTTTATGTGGGAGGGAGTG+TGG + chr6.2:19890963-19890982 MS.gene55643:CDS 50.0%
TTCACCAATGCCGCCTAGAA+CGG + chr6.2:19890821-19890840 MS.gene55643:CDS 50.0%
! ATTGGAAGAGAGTGTGGGCT+GGG + chr6.2:19890939-19890958 MS.gene55643:CDS 50.0%
! CTTCTGAGGGCAATGTTCCA+AGG - chr6.2:19893122-19893141 None:intergenic 50.0%
! GGGTGTTGTGAGAGAGAATG+AGG - chr6.2:19890350-19890369 None:intergenic 50.0%
! GTTTATGTGGGAGGGAGTGT+GGG + chr6.2:19890964-19890983 MS.gene55643:CDS 50.0%
! TATTGGAAGAGAGTGTGGGC+TGG + chr6.2:19890938-19890957 MS.gene55643:CDS 50.0%
! TCATCGTCAACCGTTCTAGG+CGG - chr6.2:19890834-19890853 None:intergenic 50.0%
! TGATGACGATACCCCTGAGA+TGG + chr6.2:19892284-19892303 MS.gene55643:intron 50.0%
! TGTCGGCTGTGAAAATGGGA+AGG + chr6.2:19890770-19890789 MS.gene55643:CDS 50.0%
! TTGATCGCTCTAGGCGGAAT+TGG - chr6.2:19890726-19890745 None:intergenic 50.0%
!! AGGTGCTCTAAGAAATCGGG+AGG + chr6.2:19892062-19892081 MS.gene55643:intron 50.0%
!! AGGTGTCTGTGATGATGGTG+GGG + chr6.2:19890569-19890588 MS.gene55643:CDS 50.0%
!! ATTCCGCCGGTTGATGAAGT+TGG + chr6.2:19890612-19890631 MS.gene55643:CDS 50.0%
!! GAAGGTGTCTGTGATGATGG+TGG + chr6.2:19890567-19890586 MS.gene55643:CDS 50.0%
!! GATGATGGGTCGGTGAGATT+TGG + chr6.2:19890417-19890436 MS.gene55643:CDS 50.0%
!! GATGATGGGTCTGTGGTAGA+TGG + chr6.2:19890678-19890697 MS.gene55643:CDS 50.0%
!! GGGTCAGTGAGTTTTGGTGT+TGG + chr6.2:19890540-19890559 MS.gene55643:CDS 50.0%
!! GTGGGCTGGGTTGTTTATGT+GGG + chr6.2:19890952-19890971 MS.gene55643:CDS 50.0%
!! TGTGGGCTGGGTTGTTTATG+TGG + chr6.2:19890951-19890970 MS.gene55643:CDS 50.0%
!! TTCCGCCGGTTGATGAAGTT+GGG + chr6.2:19890613-19890632 MS.gene55643:CDS 50.0%
ACCGGCCCAACTTCATCAAC+CGG - chr6.2:19890621-19890640 None:intergenic 55.0%
CACCACCGCCCAATGATCAT+GGG + chr6.2:19890520-19890539 MS.gene55643:CDS 55.0%
CGGCTGTGAAAATGGGAAGG+TGG + chr6.2:19890773-19890792 MS.gene55643:CDS 55.0%
CTCAAAGGTTCGCGAAGCGT+CGG - chr6.2:19890250-19890269 None:intergenic 55.0%
GAAAATGGGTCAGTGGGAGG+TGG + chr6.2:19890468-19890487 MS.gene55643:CDS 55.0%
GAAGTTGGGCCGGTGAAGTT+TGG + chr6.2:19890627-19890646 MS.gene55643:CDS 55.0%
GATGGGTCTGTGGTAGATGG+TGG + chr6.2:19890681-19890700 MS.gene55643:CDS 55.0%
GCGACGGAGGGTGATGATTT+GGG - chr6.2:19890223-19890242 None:intergenic 55.0%
GGCTGGGTTGTTTATGTGGG+AGG + chr6.2:19890955-19890974 MS.gene55643:CDS 55.0%
GGTGTGGGATGTGAGTGTGA+AGG + chr6.2:19890870-19890889 MS.gene55643:CDS 55.0%
TGCGACGGAGGGTGATGATT+TGG - chr6.2:19890224-19890243 None:intergenic 55.0%
TGGGTCTGTGGTAGATGGTG+GGG + chr6.2:19890683-19890702 MS.gene55643:CDS 55.0%
TTGTCTCCTCTGTGCTTCCG+TGG - chr6.2:19892779-19892798 None:intergenic 55.0%
! TCAACCGTTCTAGGCGGCAT+TGG - chr6.2:19890828-19890847 None:intergenic 55.0%
! TGACAACCACGGAAGCACAG+AGG + chr6.2:19892770-19892789 MS.gene55643:CDS 55.0%
! TGGGAGGGAGTGTGGGAATA+GGG + chr6.2:19890971-19890990 MS.gene55643:CDS 55.0%
!! GGGTCGGTGAGATTTGGTGT+TGG + chr6.2:19890423-19890442 MS.gene55643:CDS 55.0%
!! GGTGTCTGTGATGATGGTGG+GGG + chr6.2:19890570-19890589 MS.gene55643:CDS 55.0%
!! GTATGGTGTGGTGGTGGGAA+AGG + chr6.2:19891029-19891048 MS.gene55643:CDS 55.0%
!! GTGTGGTGGTGGGAAAGGAT+GGG + chr6.2:19891034-19891053 MS.gene55643:CDS 55.0%
!! TGTGGTGGTGGGAAAGGATG+GGG + chr6.2:19891035-19891054 MS.gene55643:CDS 55.0%
AATGGGAAGGTGGGAGGCAG+TGG + chr6.2:19890783-19890802 MS.gene55643:CDS 60.0%
AATGGGTCAGTGGGAGGTGG+TGG + chr6.2:19890471-19890490 MS.gene55643:CDS 60.0%
ATGGGTCAGTGGGAGGTGGT+GGG + chr6.2:19890472-19890491 MS.gene55643:CDS 60.0%
CCACCACCGCCCAATGATCA+TGG + chr6.2:19890519-19890538 MS.gene55643:CDS 60.0%
CCATCTAGGGGAAGCCAGTC+CGG + chr6.2:19891718-19891737 MS.gene55643:intron 60.0%
CCATGATCATTGGGCGGTGG+TGG - chr6.2:19890522-19890541 None:intergenic 60.0%
GACCCATGATCATTGGGCGG+TGG - chr6.2:19890525-19890544 None:intergenic 60.0%
GGCCCAACTTCATCAACCGG+CGG - chr6.2:19890618-19890637 None:intergenic 60.0%
TGGCTTCCCCTAGATGGACC+TGG - chr6.2:19891715-19891734 None:intergenic 60.0%
TTACCCTCTCCAGCACCCCA+TGG - chr6.2:19890384-19890403 None:intergenic 60.0%
! GGGTCTGTGGTAGATGGTGG+GGG + chr6.2:19890684-19890703 MS.gene55643:CDS 60.0%
! GTGGGAGGGAGTGTGGGAAT+AGG + chr6.2:19890970-19890989 MS.gene55643:CDS 60.0%
!! CAACCATGGGGTGCTGGAGA+GGG + chr6.2:19890378-19890397 MS.gene55643:CDS 60.0%
!! GCCGGTTGATGAAGTTGGGC+CGG + chr6.2:19890617-19890636 MS.gene55643:CDS 60.0%
!! GGGCCGGTGAAGTTTGGTGT+TGG + chr6.2:19890633-19890652 MS.gene55643:CDS 60.0%
!! GGTGTGGTGGTGGGAAAGGA+TGG + chr6.2:19891033-19891052 MS.gene55643:CDS 60.0%
!! TCAACCATGGGGTGCTGGAG+AGG + chr6.2:19890377-19890396 MS.gene55643:CDS 60.0%
TGGGTCAGTGGGAGGTGGTG+GGG + chr6.2:19890473-19890492 MS.gene55643:CDS 65.0%
! AGCGTCGGAGATGCGACGGA+GGG - chr6.2:19890235-19890254 None:intergenic 65.0%
!! AAGCGTCGGAGATGCGACGG+AGG - chr6.2:19890236-19890255 None:intergenic 65.0%
!! CCGGACTGGCTTCCCCTAGA+TGG - chr6.2:19891721-19891740 None:intergenic 65.0%
!! GCGAAGCGTCGGAGATGCGA+CGG - chr6.2:19890239-19890258 None:intergenic 65.0%
GCAGTGACACGGCCGCCCAT+TGG - chr6.2:19893085-19893104 None:intergenic 70.0%
GGGAAGGTGGGAGGCAGTGG+TGG + chr6.2:19890786-19890805 MS.gene55643:CDS 70.0%
! GGGTCAGTGGGAGGTGGTGG+GGG + chr6.2:19890474-19890493 MS.gene55643:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 19890048 19893149 19890048 ID=MS.gene55643
chr6.2 mRNA 19890048 19893149 19890048 ID=MS.gene55643.t1;Parent=MS.gene55643
chr6.2 exon 19890048 19890992 19890048 ID=MS.gene55643.t1.exon1;Parent=MS.gene55643.t1
chr6.2 CDS 19890048 19890992 19890048 ID=cds.MS.gene55643.t1;Parent=MS.gene55643.t1
chr6.2 exon 19891026 19891110 19891026 ID=MS.gene55643.t1.exon2;Parent=MS.gene55643.t1
chr6.2 CDS 19891026 19891110 19891026 ID=cds.MS.gene55643.t1;Parent=MS.gene55643.t1
chr6.2 exon 19892761 19893149 19892761 ID=MS.gene55643.t1.exon3;Parent=MS.gene55643.t1
chr6.2 CDS 19892761 19893149 19892761 ID=cds.MS.gene55643.t1;Parent=MS.gene55643.t1
Gene Sequence

>MS.gene55643

ATGAAGATACCCAGGAAATCGAGTAGCAGCAATGGTGATTCAAACTCTTCATCATCATCATCATCATCATCATCATCGTTTCTTGTTCAACACGCAACCCTAATTCTACCATATCTAACCCACACACAACTCGCGAACATCTCCCTAACCTGCAAAACACTCCGTAAACTCACCCAAATCATCACCCTCCGTCGCATCTCCGACGCTTCGCGAACCTTTGAGAATCATCCAATCCCATTTCTCAACACCATCAACAACAACAACAACCCTCCTTACTCCTACTTTCTATACACACCTTCCCTCATTCTCTCTCACAACACCCCCAATTATCAACCATGGGGTGCTGGAGAGGGTAATTCTGTCATTTCAGATGATGGGTCGGTGAGATTTGGTGTTGGTTGTGATTTTGAAGGTGTTTGTGAAAATGGGTCAGTGGGAGGTGGTGGGGGTAGTTCTGTCATTTCACTACTACCACCACCGCCCAATGATCATGGGTCAGTGAGTTTTGGTGTTGGATGTGAAGGTGTCTGTGATGATGGTGGGGGTAAATCAGTAATTTCACTAATTCCGCCGGTTGATGAAGTTGGGCCGGTGAAGTTTGGTGTTGGATGTAATTTTCAAGGTGTATGTGATGATGGGTCTGTGGTAGATGGTGGGGGTAGTTCAGTAATTTCACCAATTCCGCCTAGAGCGATCAATGATGAGGGATCGGTGAGATTTGATGTCGGCTGTGAAAATGGGAAGGTGGGAGGCAGTGGTGGTAGTTCAGTTATTTCACCAATGCCGCCTAGAACGGTTGACGATGATGACTCAGTGAGATTTGGTGTGGGATGTGAGTGTGAAGGTGCTTGTGATGATGAGTGTATGTGTTTTTTTGATGGGGTTGATGGTATTGGAAGAGAGTGTGGGCTGGGTTGTTTATGTGGGAGGGAGTGTGGGAATAGGGTGAGTTAAAATGGGGTTAATGTTAGGGTTAAGATTGTATGGTGTGGTGGTGGGAAAGGATGGGGTTTGTTTGCGAATCAGGTTGTTCGTAAAGAGGAGTTCTTGTTTCAATATGCAGGTATAAATTTCATTGCTTTTATTAAATATTTAAGTGATTGTTTGATTGATTATAGGATTGTAACATTGGTTCTTATGTATATTTTAGTATTTTTGCGTAGGATTGATTTGAATTTGAACGTGGAATTTGGAGGTCTTTTTGTCTCTATAATATATGTTAGAATTGATTCTAGAATCGTATAGTTGATTATGACGTGTTTTTGTGTTTTAGAGTTGGAATGATTTTTCCATTAGAAATTTAGAATTGATCCGAATTTGGTGCTAAAATTTTGAGATTTTGCGTTCATGATAGAAGCTAGAATTGATGCTAGAAATCATAAAGTGCTTGTTTGGATATATGTTGGTTTGACGTTTCTCGCGTCACAATGTGTTCTCAAGCTTAAGATTTTGAATTACGTTTATGTTATTTGTATCAGTATATGTATGTGCGCGCTTTTCAATTTTATATTTAATTTTTAGGTATGGAATTCTTAATCTCAGCATAAACAAAGTCACGAACTAGAAAACACGAACAAACTCATTGTTTCAAATTGCAAAGAACATAACAGACCCAAAAGGTGAATAATTCTGATGAGTTAAAAACTAGCTCTACCAAGTTCAATCCAGGTCCATCTAGGGGAAGCCAGTCCGGTAAATTCGATCACCAAGTATTTTCTGGTTTTTCATACGGAATTGAACCTTGTTGCCAACAACTTGTTGGTATGATTCATCAATTTTACTTCTTCTACATGCTAGCTACATGCTAGAATGCGATTAATCCACATTCTCAAGTAGAACAAAACCACTGTACATTTTCAATTGCCATTTTGACAACCTTCCCTTGAGTGAAATATTAAGTTTTCATTGCAAGCTGAGCTGTATTTTACCCTAATTATTAGCTTGTTAAGATGATGGTCTATAGGTCAAGGGTGAAGTCTTGAATTTGATATTTCTATGTAAAAAGTTACTTTATAGGTGCTCTAAGAAATCGGGAGGTTTTATACTATAGTAGGAACACGGGTCTTTGGTTTTAGCAACCCACTTAGAAGGCAAAATCAATTTGCAAATTGCAATATGTTGAGTAGGAATGTTTCAAATCCGTAGATGTAAACTGCCTGTACTTTTGTATTTAAGTTAATAGTTAAGGTACTTTTGATATTTTGACTAATATAGAGATTTGAAAGGCTTTTTATTTTGATGACGATACCCCTGAGATGGTGACATTATCAAATATGAGTCTATTTGGATGACTTATTTGAGCTTATCTCCTAACACAAGCACTTGTGAGACTGTTTGGGAAACAACTTATGACGGGTCCATAAGCTGTTTTCAACGTATTTCCATAAGCTCTCCGAAACAGCTTATGAAAACAAATTGTAGCTTATATGAAAACAATTCGACTCTATGTTATCTTTTGTTATACAAATAGCTTATATATAAGCGCTGATGTTATAAGCGGTTAATTAAATTGTTTATCTAAACAGAGCCATATATGCTTATGAACTAAAGAGTTGTGTGAAGATTGATAGAAACTACCTCCTAGTGTTTGCTATGTTAAGGTGATTGGGTCTGATAGTTTCTTGATTCTTTTAGTTGTGTTTTTATGCATGACATTTCTTTATCCCTACACAAATGCTTGTAAAATTAATTTGCGGTTTTCTGTGTGAAAAAGGTGAACTACTGACAACCACGGAAGCACAGAGGAGACAACAACATTATGATGAACTGGCATCGCGTGGTCGTTTCTCGTCTGCTCTTTTAGTAGTAAGGGAACATCTTCCATCAGGAAAGGCATGTTTGAGATTGAACATAGACGCAACAAAAATAGGAAATGTTGCCCGGTTTGTAAATCATTCATGCGATGGTGGTAATTTAAGCACAAAGCTAGTCAGAAGTACAAGAGCTTTGTTCCCCCGCCTCTGCTTTTTTGCTTCGAAAGATATCCAAAAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGTCCAATGGGCGGCCGTGTCACTGCAACAGCCTTTCTTGCCTTGGAACATTGCCCTCAGAAGACACTTGA
Protein sequence

>MS.gene55643.t1

MKIPRKSSSSNGDSNSSSSSSSSSSSFLVQHATLILPYLTHTQLANISLTCKTLRKLTQIITLRRISDASRTFENHPIPFLNTINNNNNPPYSYFLYTPSLILSHNTPNYQPWGAGEGNSVISDDGSVRFGVGCDFEGVCENGSVGGGGGSSVISLLPPPPNDHGSVSFGVGCEGVCDDGGGKSVISLIPPVDEVGPVKFGVGCNFQGVCDDGSVVDGGGSSVISPIPPRAINDEGSVRFDVGCENGKVGGSGGSSVISPMPPRTVDDDDSVRFGVGCECEGACDDECMCFFDGVDGIGRECGLGCLCGRECGNRIVWCGGGKGWGLFANQVVRKEEFLFQYAGELLTTTEAQRRQQHYDELASRGRFSSALLVVREHLPSGKACLRLNIDATKIGNVARFVNHSCDGGNLSTKLVRSTRALFPRLCFFASKDIQKDEELTFSYGEIRKRSNGRPCHCNSLSCLGTLPSEDT