AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55876

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55876.t1 MTR_8g101650 92.527 281 13 4 1 274 1 280 4.07e-169 469
MS.gene55876.t1 MTR_6g092540 52.614 306 96 13 1 274 1 289 5.01e-75 231
MS.gene55876.t1 MTR_2g100930 53.371 178 65 5 4 169 3 174 2.57e-46 159
MS.gene55876.t1 MTR_4g100630 48.370 184 65 7 4 176 3 167 1.58e-43 150
MS.gene55876.t1 MTR_5g037080 45.143 175 73 5 4 168 5 166 5.62e-38 136
MS.gene55876.t1 MTR_4g111975 67.089 79 25 1 99 176 132 210 5.01e-33 122
MS.gene55876.t1 MTR_3g104370 42.941 170 79 3 4 170 5 159 1.32e-31 117
MS.gene55876.t1 MTR_7g067080 76.056 71 16 1 99 168 134 204 1.23e-30 116
MS.gene55876.t1 MTR_5g069710 70.270 74 21 1 96 168 123 196 3.40e-30 115
MS.gene55876.t1 MTR_3g462790 71.233 73 20 1 97 168 139 211 3.41e-30 115
MS.gene55876.t1 MTR_1g111830 62.791 86 31 1 84 168 103 188 1.46e-29 112
MS.gene55876.t1 MTR_5g081860 64.474 76 24 1 96 168 116 191 6.79e-27 105
MS.gene55876.t1 MTR_4g107230 79.245 53 11 0 99 151 78 130 1.07e-26 105
MS.gene55876.t1 MTR_0036s0260 52.000 100 34 4 89 181 6 98 2.51e-25 100
MS.gene55876.t1 MTR_8g063600 60.000 80 29 1 99 175 100 179 2.74e-24 99.4
MS.gene55876.t1 MTR_2g090305 53.000 100 33 4 89 181 6 98 1.77e-23 94.7
MS.gene55876.t1 MTR_1g048660 55.556 81 34 2 106 185 13 92 9.15e-23 90.1
MS.gene55876.t1 MTR_5g088010 49.383 81 37 2 97 173 52 132 9.34e-19 83.6
MS.gene55876.t1 MTR_5g027570 52.632 76 33 2 101 173 88 163 1.37e-18 82.8
MS.gene55876.t1 MTR_1g033620 65.455 55 18 1 120 173 20 74 1.36e-17 80.1
MS.gene55876.t1 MTR_8g063870 54.286 70 29 1 107 173 94 163 1.86e-17 80.5
MS.gene55876.t1 MTR_5g088060 54.930 71 28 2 107 173 274 344 3.92e-17 81.3
MS.gene55876.t1 MTR_5g488160 54.930 71 28 2 107 173 274 344 3.92e-17 81.3
MS.gene55876.t1 MTR_4g015130 65.455 55 18 1 115 168 3 57 5.58e-16 71.6
MS.gene55876.t1 MTR_5g027550 57.143 56 24 0 101 156 73 128 6.42e-16 75.5
MS.gene55876.t1 MTR_1g083180 51.562 64 26 3 107 166 63 125 1.53e-12 65.1
MS.gene55876.t1 MTR_5g075760 65.217 46 15 1 107 152 107 151 1.46e-11 62.8
MS.gene55876.t1 MTR_5g075790 61.702 47 17 1 107 153 115 160 4.54e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55876.t1 AT5G56840 54.891 184 51 5 1 174 1 162 7.39e-53 172
MS.gene55876.t1 AT5G61620 47.904 167 81 3 4 168 10 172 2.38e-44 152
MS.gene55876.t1 AT5G47390 43.062 209 96 5 4 208 3 192 3.65e-43 150
MS.gene55876.t1 AT1G70000 47.514 181 60 6 4 169 3 163 5.70e-40 140
MS.gene55876.t1 AT1G70000 47.514 181 60 6 4 169 3 163 5.70e-40 140
MS.gene55876.t1 AT3G16350 44.286 210 63 7 4 169 3 202 3.93e-36 132
MS.gene55876.t1 AT1G49010 61.957 92 32 2 99 187 128 219 1.22e-32 122
MS.gene55876.t1 AT5G08520 65.432 81 25 2 99 176 112 192 2.67e-31 118
MS.gene55876.t1 AT5G01200 68.293 82 23 2 90 168 129 210 5.81e-31 116
MS.gene55876.t1 AT2G38090 74.286 70 17 1 100 168 136 205 5.76e-30 114
MS.gene55876.t1 AT5G58900 69.863 73 21 1 97 168 133 205 2.12e-29 112
MS.gene55876.t1 AT3G11280 55.046 109 42 3 96 199 118 224 1.24e-28 110
MS.gene55876.t1 AT3G11280 55.046 109 42 3 96 199 118 224 1.24e-28 110
MS.gene55876.t1 AT5G04760 65.714 70 23 1 100 168 94 163 5.04e-27 104
MS.gene55876.t1 AT5G05790 67.568 74 23 1 96 168 122 195 6.12e-27 106
MS.gene55876.t1 AT5G05790 67.568 74 23 1 96 168 122 195 6.12e-27 106
MS.gene55876.t1 AT1G19000 80.392 51 10 0 101 151 98 148 3.18e-25 101
MS.gene55876.t1 AT1G19000 80.392 51 10 0 101 151 98 148 3.18e-25 101
MS.gene55876.t1 AT1G74840 76.923 52 12 0 100 151 91 142 1.86e-24 98.6
MS.gene55876.t1 AT1G74840 76.923 52 12 0 100 151 91 142 2.67e-24 99.0
MS.gene55876.t1 AT3G10580 51.042 96 44 3 101 195 91 184 8.15e-22 92.0
MS.gene55876.t1 AT3G10580 51.042 96 44 3 101 195 91 184 1.21e-21 92.0
MS.gene55876.t1 AT5G23650 56.579 76 32 1 99 173 114 189 3.49e-21 91.7
MS.gene55876.t1 AT4G09450 67.925 53 17 0 101 153 87 139 6.90e-18 80.1
MS.gene55876.t1 AT3G10590 48.837 86 40 3 101 183 105 189 1.88e-15 73.6

Find 64 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATTAAGTGACGCTAAT+TGG 0.117960 4.3:-3610374 None:intergenic
CCTGCTGGCTCATTCCTTCT+TGG 0.142813 4.3:+3610350 MS.gene55876:CDS
TGCTAATTCAGTAGTAAAAT+TGG 0.226629 4.3:+3610109 MS.gene55876:CDS
TTGGAGGACTTCGTCTCTTC+GGG 0.227891 4.3:+3608854 MS.gene55876:CDS
TTGTGCAGCAGTGCCTAATT+TGG 0.253498 4.3:+3610277 MS.gene55876:CDS
ATAATTACTCTACAGATAAT+TGG 0.274738 4.3:+3610237 MS.gene55876:CDS
TATACCTTTCTTTCTCTCTT+GGG 0.282804 4.3:-3609073 None:intergenic
ATATACCTTTCTTTCTCTCT+TGG 0.345963 4.3:-3609074 None:intergenic
CTTGGAGGACTTCGTCTCTT+CGG 0.346467 4.3:+3608853 MS.gene55876:CDS
GAAAGTGTGAGGTCCAAATT+AGG 0.360682 4.3:-3610290 None:intergenic
TTAATTAAGTGACGCTAATT+GGG 0.384534 4.3:-3610373 None:intergenic
CTGTGCTCTTCTTCTGTCCA+TGG 0.393875 4.3:-3609589 None:intergenic
GAGCACAGAACATTCCTTGT+TGG 0.426067 4.3:+3609604 MS.gene55876:CDS
TGTTCGCATTGTGGTAAGAT+AGG 0.440998 4.3:+3608796 MS.gene55876:CDS
AATGAGGAAGATGGAGAGGA+TGG 0.441387 4.3:-3608955 None:intergenic
CATGGCTAGCGACTTGTGTA+GGG 0.443009 4.3:-3609690 None:intergenic
GCATGGCTAGCGACTTGTGT+AGG 0.465972 4.3:-3609691 None:intergenic
ATACCTTTCTTTCTCTCTTG+GGG 0.468820 4.3:-3609072 None:intergenic
CCAAGAAGGAATGAGCCAGC+AGG 0.469903 4.3:-3610350 None:intergenic
GCTAATTCAGTAGTAAAATT+GGG 0.470189 4.3:+3610110 MS.gene55876:CDS
ATGAGGAGGAAGATGATAGT+TGG 0.475244 4.3:-3608879 None:intergenic
CAAAATCAACCCTCCCCTGC+TGG 0.476253 4.3:+3610335 MS.gene55876:CDS
GGATTAGAGAAGCTAGGAAA+AGG 0.476740 4.3:+3609625 MS.gene55876:CDS
CTACTGAATTAGCATGCCCT+TGG 0.478374 4.3:-3610100 None:intergenic
TGCACATCCTTCACTACCCT+TGG 0.478767 4.3:+3608835 MS.gene55876:CDS
AGAAGCTAGGAAAAGGAGAC+TGG 0.482282 4.3:+3609632 MS.gene55876:CDS
CCTTTCTTTCTCTCTTGGGG+TGG 0.484527 4.3:-3609069 None:intergenic
TGGAGAGGATGGTGAGGGAA+AGG 0.486578 4.3:-3608944 None:intergenic
CAAGAAGGAATGAGCCAGCA+GGG 0.487978 4.3:-3610349 None:intergenic
TGCTTCTTCTTGTTTAAAGT+AGG 0.502048 4.3:-3610192 None:intergenic
GTAAGATAGGACATAATTGT+AGG 0.502669 4.3:+3608809 MS.gene55876:CDS
CCACCCCAAGAGAGAAAGAA+AGG 0.504684 4.3:+3609069 MS.gene55876:CDS
AAAATTGGGTCATAAATTTG+AGG 0.507444 4.3:+3610124 MS.gene55876:CDS
AGAGAATGAGGAAGATGGAG+AGG 0.510998 4.3:-3608959 None:intergenic
AAGGAATGAGCCAGCAGGGG+AGG 0.519594 4.3:-3610345 None:intergenic
GATGAAGAGAATGAGGAAGA+TGG 0.523435 4.3:-3608964 None:intergenic
CTTGTTGGATTAGAGAAGCT+AGG 0.528666 4.3:+3609619 MS.gene55876:CDS
AACACCAACACAAAAGACCA+AGG 0.532037 4.3:+3610083 MS.gene55876:CDS
TTGATTGATCAGGAGTTCCA+TGG 0.532260 4.3:+3609572 MS.gene55876:intron
ACATCCTTCACTACCCTTGG+AGG 0.544075 4.3:+3608838 MS.gene55876:CDS
TGACGCTAATTGGGCCAAGA+AGG 0.545277 4.3:-3610364 None:intergenic
AGGAATGAGCCAGCAGGGGA+GGG 0.549931 4.3:-3610344 None:intergenic
GGAAGATGGAGAGGATGGTG+AGG 0.553718 4.3:-3608950 None:intergenic
AGATATGAAATATTAGAAGT+GGG 0.561423 4.3:-3609027 None:intergenic
GATCAAGAAAAGCTTTAGCA+TGG 0.562627 4.3:+3608918 MS.gene55876:CDS
TAGATATGAAATATTAGAAG+TGG 0.562815 4.3:-3609028 None:intergenic
GAAGATGGAGAGGATGGTGA+GGG 0.564987 4.3:-3608949 None:intergenic
ACGTTCAAGTCTCTTTGACT+TGG 0.572684 4.3:+3609756 MS.gene55876:CDS
CGAAGAGACGAAGTCCTCCA+AGG 0.582973 4.3:-3608852 None:intergenic
TGATGTTGATGAAGAGAATG+AGG 0.596418 4.3:-3608971 None:intergenic
CTAGCTTCTCTAATCCAACA+AGG 0.600496 4.3:-3609618 None:intergenic
AGAAGAAAGTGTTCGCATTG+TGG 0.603130 4.3:+3608787 MS.gene55876:CDS
AAGTCCTCCAAGGGTAGTGA+AGG 0.604978 4.3:-3608842 None:intergenic
TTGTTTAAAGTAGGACAAAG+TGG 0.607562 4.3:-3610183 None:intergenic
TGTGAAGTTGAGATGAATGA+TGG 0.607811 4.3:+3610158 MS.gene55876:CDS
AAGAAGGAATGAGCCAGCAG+GGG 0.613479 4.3:-3610348 None:intergenic
TGGAGGACTTCGTCTCTTCG+GGG 0.623972 4.3:+3608855 MS.gene55876:CDS
GGTACTAGATGATGATGAGG+AGG 0.625545 4.3:-3608893 None:intergenic
CATGGTACTAGATGATGATG+AGG 0.639951 4.3:-3608896 None:intergenic
ACACCAACACAAAAGACCAA+GGG 0.642158 4.3:+3610084 MS.gene55876:CDS
GAAGAGACGAAGTCCTCCAA+GGG 0.651358 4.3:-3608851 None:intergenic
ATGGCTAGCGACTTGTGTAG+GGG 0.659705 4.3:-3609689 None:intergenic
CTAGGAAAAGGAGACTGGAG+AGG 0.661686 4.3:+3609637 MS.gene55876:CDS
GGGATGCAACTGAAAGTGTG+AGG 0.693635 4.3:-3610301 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAAAATATTTATTT+AGG - chr4.3:3609997-3610016 None:intergenic 0.0%
!!! TTTTATTATTTTTATTTTTA+TGG + chr4.3:3610006-3610025 MS.gene55876:intron 0.0%
!! AAATAAAAAAAAGTTAAAAG+AGG - chr4.3:3609952-3609971 None:intergenic 10.0%
!! ATAAATTAAAAAACAAATGA+AGG - chr4.3:3609314-3609333 None:intergenic 10.0%
!!! ATAATAATTTTCATCAATAT+TGG - chr4.3:3609001-3609020 None:intergenic 10.0%
!! ATATTATTAATTCAATGACA+AGG - chr4.3:3610034-3610053 None:intergenic 15.0%
!! TATATTTATACATATGTTAG+CGG + chr4.3:3609092-3609111 MS.gene55876:intron 15.0%
!! TCTTATATTCCTTTATATAT+TGG + chr4.3:3609401-3609420 MS.gene55876:intron 15.0%
!!! ATAATTTTTATTTGTGGTTA+TGG - chr4.3:3609902-3609921 None:intergenic 15.0%
!!! TAATTTTTATTTGTGGTTAT+GGG - chr4.3:3609901-3609920 None:intergenic 15.0%
!!! TATAAAGGAATATAAGATTT+TGG - chr4.3:3609398-3609417 None:intergenic 15.0%
!! AATATAAAGTAAGTCTTACA+TGG + chr4.3:3609868-3609887 MS.gene55876:intron 20.0%
!! AGATATGAAATATTAGAAGT+GGG - chr4.3:3609030-3609049 None:intergenic 20.0%
!! ATAATTACTCTACAGATAAT+TGG + chr4.3:3610237-3610256 MS.gene55876:CDS 20.0%
!! TAGATATGAAATATTAGAAG+TGG - chr4.3:3609031-3609050 None:intergenic 20.0%
!! TATTCCTTTATATATTGGTA+TGG + chr4.3:3609406-3609425 MS.gene55876:intron 20.0%
!! TCAAAAATACTTTCTTAGAT+TGG + chr4.3:3609714-3609733 MS.gene55876:CDS 20.0%
!! TCTTTCAATTCTATTCTTAT+TGG - chr4.3:3609364-3609383 None:intergenic 20.0%
!!! TATCTATCAGATTGTTTTAT+AGG + chr4.3:3609045-3609064 MS.gene55876:CDS 20.0%
! AAAATTGGGTCATAAATTTG+AGG + chr4.3:3610124-3610143 MS.gene55876:CDS 25.0%
! AAGACTTACTTTATATTCAG+TGG - chr4.3:3609865-3609884 None:intergenic 25.0%
! ACATCCATACCAATATATAA+AGG - chr4.3:3609413-3609432 None:intergenic 25.0%
! ATACTTCTAATTTGAGCTAA+GGG + chr4.3:3609471-3609490 MS.gene55876:intron 25.0%
! ATGATGAATGAGAAAATACT+TGG + chr4.3:3609518-3609537 MS.gene55876:intron 25.0%
! GCTAATTCAGTAGTAAAATT+GGG + chr4.3:3610110-3610129 MS.gene55876:CDS 25.0%
! TATACTTCTAATTTGAGCTA+AGG + chr4.3:3609470-3609489 MS.gene55876:intron 25.0%
! TGATGAATGAGAAAATACTT+GGG + chr4.3:3609519-3609538 MS.gene55876:intron 25.0%
! TGCTAATTCAGTAGTAAAAT+TGG + chr4.3:3610109-3610128 MS.gene55876:CDS 25.0%
!! TATATACTGATTGATTGATC+AGG + chr4.3:3609562-3609581 MS.gene55876:intron 25.0%
!!! ATTTTCTTGCTTTTCTGATT+TGG - chr4.3:3610219-3610238 None:intergenic 25.0%
!!! TAAGAAAGTATTTTTGAGCA+TGG - chr4.3:3609711-3609730 None:intergenic 25.0%
AATATGATATATTTGGCTGC+AGG + chr4.3:3610049-3610068 MS.gene55876:intron 30.0%
ATATACCTTTCTTTCTCTCT+TGG - chr4.3:3609077-3609096 None:intergenic 30.0%
GTAAGATAGGACATAATTGT+AGG + chr4.3:3608809-3608828 MS.gene55876:CDS 30.0%
TATACCTTTCTTTCTCTCTT+GGG - chr4.3:3609076-3609095 None:intergenic 30.0%
! TGCTTCTTCTTGTTTAAAGT+AGG - chr4.3:3610195-3610214 None:intergenic 30.0%
! TTGATTTTGTTCAAGCTTAG+GGG - chr4.3:3610324-3610343 None:intergenic 30.0%
! TTGTTTAAAGTAGGACAAAG+TGG - chr4.3:3610186-3610205 None:intergenic 30.0%
!! GTTGATTTTGTTCAAGCTTA+GGG - chr4.3:3610325-3610344 None:intergenic 30.0%
AAACAAATGAAGGAAGCTGT+TGG - chr4.3:3609304-3609323 None:intergenic 35.0%
ATACCTTTCTTTCTCTCTTG+GGG - chr4.3:3609075-3609094 None:intergenic 35.0%
ATTTGAGCTAAGGGAGTTAA+TGG + chr4.3:3609480-3609499 MS.gene55876:intron 35.0%
TACATATGTTAGCGGAAAGA+TGG + chr4.3:3609100-3609119 MS.gene55876:intron 35.0%
TGTGAAGTTGAGATGAATGA+TGG + chr4.3:3610158-3610177 MS.gene55876:CDS 35.0%
! GATCAAGAAAAGCTTTAGCA+TGG + chr4.3:3608918-3608937 MS.gene55876:CDS 35.0%
! GCTAAAGCTTTTCTTGATCA+TGG - chr4.3:3608917-3608936 None:intergenic 35.0%
! TGATGTTGATGAAGAGAATG+AGG - chr4.3:3608974-3608993 None:intergenic 35.0%
!! GGTTGATTTTGTTCAAGCTT+AGG - chr4.3:3610326-3610345 None:intergenic 35.0%
AACACCAACACAAAAGACCA+AGG + chr4.3:3610083-3610102 MS.gene55876:CDS 40.0%
ACACCAACACAAAAGACCAA+GGG + chr4.3:3610084-3610103 MS.gene55876:CDS 40.0%
ACGTTCAAGTCTCTTTGACT+TGG + chr4.3:3609756-3609775 MS.gene55876:CDS 40.0%
ATGAGGAGGAAGATGATAGT+TGG - chr4.3:3608882-3608901 None:intergenic 40.0%
CTAGCTTCTCTAATCCAACA+AGG - chr4.3:3609621-3609640 None:intergenic 40.0%
GATATATTTGGCTGCAGGTT+GGG + chr4.3:3610054-3610073 MS.gene55876:intron 40.0%
GATGAAGAGAATGAGGAAGA+TGG - chr4.3:3608967-3608986 None:intergenic 40.0%
GGATTAGAGAAGCTAGGAAA+AGG + chr4.3:3609625-3609644 MS.gene55876:CDS 40.0%
TATTTGTGGTTATGGGCTTG+TGG - chr4.3:3609894-3609913 None:intergenic 40.0%
TGATATATTTGGCTGCAGGT+TGG + chr4.3:3610053-3610072 MS.gene55876:intron 40.0%
TGTTCGCATTGTGGTAAGAT+AGG + chr4.3:3608796-3608815 MS.gene55876:CDS 40.0%
TTGATTGATCAGGAGTTCCA+TGG + chr4.3:3609572-3609591 MS.gene55876:intron 40.0%
! CATGGTACTAGATGATGATG+AGG - chr4.3:3608899-3608918 None:intergenic 40.0%
! CTTGTTGGATTAGAGAAGCT+AGG + chr4.3:3609619-3609638 MS.gene55876:CDS 40.0%
! GAAAGTGTGAGGTCCAAATT+AGG - chr4.3:3610293-3610312 None:intergenic 40.0%
!! AGAAGAAAGTGTTCGCATTG+TGG + chr4.3:3608787-3608806 MS.gene55876:CDS 40.0%
AATGAGGAAGATGGAGAGGA+TGG - chr4.3:3608958-3608977 None:intergenic 45.0%
AGAAGCTAGGAAAAGGAGAC+TGG + chr4.3:3609632-3609651 MS.gene55876:CDS 45.0%
AGAGAATGAGGAAGATGGAG+AGG - chr4.3:3608962-3608981 None:intergenic 45.0%
CTACTGAATTAGCATGCCCT+TGG - chr4.3:3610103-3610122 None:intergenic 45.0%
GAGCACAGAACATTCCTTGT+TGG + chr4.3:3609604-3609623 MS.gene55876:CDS 45.0%
TTGTGCAGCAGTGCCTAATT+TGG + chr4.3:3610277-3610296 MS.gene55876:CDS 45.0%
! GGTACTAGATGATGATGAGG+AGG - chr4.3:3608896-3608915 None:intergenic 45.0%
!! ATGCCCTTGGTCTTTTGTGT+TGG - chr4.3:3610090-3610109 None:intergenic 45.0%
!! AATTAATAATATGATATATT+TGG + chr4.3:3610042-3610061 MS.gene55876:intron 5.0%
!!! AATTAAATAATTTTTATTTG+TGG - chr4.3:3609908-3609927 None:intergenic 5.0%
AAGAAGGAATGAGCCAGCAG+GGG - chr4.3:3610351-3610370 None:intergenic 50.0%
AAGTCCTCCAAGGGTAGTGA+AGG - chr4.3:3608845-3608864 None:intergenic 50.0%
ACATCCTTCACTACCCTTGG+AGG + chr4.3:3608838-3608857 MS.gene55876:CDS 50.0%
ATGGCTAGCGACTTGTGTAG+GGG - chr4.3:3609692-3609711 None:intergenic 50.0%
CAAGAAGGAATGAGCCAGCA+GGG - chr4.3:3610352-3610371 None:intergenic 50.0%
CATGGCTAGCGACTTGTGTA+GGG - chr4.3:3609693-3609712 None:intergenic 50.0%
CCACCCCAAGAGAGAAAGAA+AGG + chr4.3:3609069-3609088 MS.gene55876:CDS 50.0%
CCTTTCTTTCTCTCTTGGGG+TGG - chr4.3:3609072-3609091 None:intergenic 50.0%
CTAGGAAAAGGAGACTGGAG+AGG + chr4.3:3609637-3609656 MS.gene55876:CDS 50.0%
CTGTGCTCTTCTTCTGTCCA+TGG - chr4.3:3609592-3609611 None:intergenic 50.0%
CTTGGAGGACTTCGTCTCTT+CGG + chr4.3:3608853-3608872 MS.gene55876:CDS 50.0%
GAAGAGACGAAGTCCTCCAA+GGG - chr4.3:3608854-3608873 None:intergenic 50.0%
GAAGATGGAGAGGATGGTGA+GGG - chr4.3:3608952-3608971 None:intergenic 50.0%
TGACGCTAATTGGGCCAAGA+AGG - chr4.3:3610367-3610386 None:intergenic 50.0%
TGCACATCCTTCACTACCCT+TGG + chr4.3:3608835-3608854 MS.gene55876:CDS 50.0%
TTGGAGGACTTCGTCTCTTC+GGG + chr4.3:3608854-3608873 MS.gene55876:CDS 50.0%
! GGGATGCAACTGAAAGTGTG+AGG - chr4.3:3610304-3610323 None:intergenic 50.0%
CAAAATCAACCCTCCCCTGC+TGG + chr4.3:3610335-3610354 MS.gene55876:CDS 55.0%
CCAAGAAGGAATGAGCCAGC+AGG - chr4.3:3610353-3610372 None:intergenic 55.0%
CGAAGAGACGAAGTCCTCCA+AGG - chr4.3:3608855-3608874 None:intergenic 55.0%
GCATGGCTAGCGACTTGTGT+AGG - chr4.3:3609694-3609713 None:intergenic 55.0%
GGAAGATGGAGAGGATGGTG+AGG - chr4.3:3608953-3608972 None:intergenic 55.0%
TGGAGAGGATGGTGAGGGAA+AGG - chr4.3:3608947-3608966 None:intergenic 55.0%
TGGAGGACTTCGTCTCTTCG+GGG + chr4.3:3608855-3608874 MS.gene55876:CDS 55.0%
!! CCTGCTGGCTCATTCCTTCT+TGG + chr4.3:3610350-3610369 MS.gene55876:CDS 55.0%
AAGGAATGAGCCAGCAGGGG+AGG - chr4.3:3610348-3610367 None:intergenic 60.0%
AGGAATGAGCCAGCAGGGGA+GGG - chr4.3:3610347-3610366 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 3608781 3610391 3608781 ID=MS.gene55876
chr4.3 mRNA 3608781 3610391 3608781 ID=MS.gene55876.t1;Parent=MS.gene55876
chr4.3 exon 3608781 3609090 3608781 ID=MS.gene55876.t1.exon1;Parent=MS.gene55876.t1
chr4.3 CDS 3608781 3609090 3608781 ID=cds.MS.gene55876.t1;Parent=MS.gene55876.t1
chr4.3 exon 3609584 3609777 3609584 ID=MS.gene55876.t1.exon2;Parent=MS.gene55876.t1
chr4.3 CDS 3609584 3609777 3609584 ID=cds.MS.gene55876.t1;Parent=MS.gene55876.t1
chr4.3 exon 3610071 3610391 3610071 ID=MS.gene55876.t1.exon3;Parent=MS.gene55876.t1
chr4.3 CDS 3610071 3610391 3610071 ID=cds.MS.gene55876.t1;Parent=MS.gene55876.t1
Gene Sequence

>MS.gene55876

ATGGGGAGAAGAAAGTGTTCGCATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACTACCCTTGGAGGACTTCGTCTCTTCGGGGTCCAACTATCATCTTCCTCCTCATCATCATCTAGTACCATGATCAAGAAAAGCTTTAGCATGGACACCTTTCCCTCACCATCCTCTCCATCTTCCTCATTCTCTTCATCAACATCATTAACCAATATTGATGAAAATTATTATCACAAACCCACTTCTAATATTTCATATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGAAAGAAAGGTATATTTATACATATGTTAGCGGAAAGATGGTCACTAATTAATGTTGTTTACGTTTTCTATTAATTTAATGTGTATTTTTTTATAGTATTTGTTGTATAGTTCATCAATTCAAAATTAATGAAAAATAAAATATATTTTTTTTTACAAATTTTATTGTTTGTAGTTGAAATGAAACTTCTTTCAAAACTAATTTATCATGTTCAAATTTCCAACAGCTTCCTTCATTTGTTTTTTAATTTATAATTTGTAATATACTAATATGTAACTACCAATAAGAATAGAATTGAAAGAAAAATGCTACACCAAAATCTTATATTCCTTTATATATTGGTATGGATGTATAGTCATGATCAATGTTAAGTAGTTATTCATACGTGTATACTTCTAATTTGAGCTAAGGGAGTTAATGGATAAGTGTTTGAATCATGATGAATGAGAAAATACTTGGGATCTCTAGTCTAACATATATTATATACTGATTGATTGATCAGGAGTTCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGATTAGAGAAGCTAGGAAAAGGAGACTGGAGAGGCATCTCTAAAAACTTTGTCACTTCAAGAACCCCTACACAAGTCGCTAGCCATGCTCAAAAATACTTTCTTAGATTGGCTACTATCAACAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTATATACACTATACTATGTTAGACAAATTCAATTCATTCATGATCATCAATTGCTTAATTATTTAGCTATCTCTTGTCGTTCACCACTGAATATAAAGTAAGTCTTACATGGCCACAAGCCCATAACCACAAATAAAAATTATTTAATTAGTTACATTTCTTAATCTTTTCCTCTTTTAACTTTTTTTTATTTGTGTGTTCAAGTAAGTATTTTTCCTAAATAAATATTTTATTATTTTTATTTTTATGGATCCTTGTCATTGAATTAATAATATGATATATTTGGCTGCAGGTTGGGAGCAAGAACACCAACACAAAAGACCAAGGGCATGCTAATTCAGTAGTAAAATTGGGTCATAAATTTGAGGATAAGTGTAAATGTGAAGTTGAGATGAATGATGGCACCACTTTGTCCTACTTTAAACAAGAAGAAGCAGCCAAATCAGAAAAGCAAGAAAATAATTACTCTACAGATAATTGGCTACATGACTCTTCAAATTGTGCAGCAGTGCCTAATTTGGACCTCACACTTTCAGTTGCATCCCCTAAGCTTGAACAAAATCAACCCTCCCCTGCTGGCTCATTCCTTCTTGGCCCAATTAGCGTCACTTAA
Protein sequence

>MS.gene55876.t1

MGRRKCSHCGKIGHNCRTCTSFTTLGGLRLFGVQLSSSSSSSSSTMIKKSFSMDTFPSPSSPSSSFSSSTSLTNIDENYYHKPTSNISYLSDCFIGPPQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISKNFVTSRTPTQVASHAQKYFLRLATINKKRRSSLFDLVGSKNTNTKDQGHANSVVKLGHKFEDKCKCEVEMNDGTTLSYFKQEEAAKSEKQENNYSTDNWLHDSSNCAAVPNLDLTLSVASPKLEQNQPSPAGSFLLGPISVT