AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55928

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55928.t1 MTR_4g102720 60.976 205 34 3 1 192 1 172 8.09e-79 242
MS.gene55928.t1 MTR_7g074790 43.023 172 79 3 3 173 6 159 4.21e-37 134
MS.gene55928.t1 MTR_0402s0040 42.353 170 94 3 7 173 26 194 1.88e-34 133
MS.gene55928.t1 MTR_7g061980 45.133 113 61 1 4 115 7 119 3.61e-27 104
MS.gene55928.t1 MTR_5g015480 44.697 132 69 3 7 135 56 186 1.68e-26 107
MS.gene55928.t1 MTR_5g039760 34.884 172 86 3 4 173 7 154 1.04e-23 97.4
MS.gene55928.t1 MTR_2g070590 44.660 103 54 2 7 106 17 119 1.16e-21 89.7
MS.gene55928.t1 MTR_6g017200 45.833 96 49 2 7 99 58 153 4.01e-20 86.7
MS.gene55928.t1 MTR_1g057920 46.914 81 42 1 7 86 34 114 7.32e-18 79.3
MS.gene55928.t1 MTR_2g099430 48.276 87 44 1 30 115 26 112 1.95e-17 78.2
MS.gene55928.t1 MTR_1g083640 28.571 196 116 5 2 176 49 241 3.29e-17 81.6
MS.gene55928.t1 MTR_2g014100 28.061 196 117 6 2 176 42 234 2.19e-16 78.6
MS.gene55928.t1 MTR_0558s0020 27.551 196 118 5 2 176 34 226 2.48e-16 79.3
MS.gene55928.t1 MTR_4g067290 29.341 167 108 6 6 164 55 219 2.37e-15 75.5
MS.gene55928.t1 MTR_4g067290 29.341 167 108 6 6 164 75 239 5.37e-15 74.7
MS.gene55928.t1 MTR_7g113010 38.095 126 63 2 7 130 457 569 6.27e-15 76.6
MS.gene55928.t1 MTR_4g067290 29.341 167 108 6 6 164 115 279 1.15e-14 74.3
MS.gene55928.t1 MTR_4g067290 28.916 166 108 7 6 164 55 217 3.34e-14 72.0
MS.gene55928.t1 MTR_1g070355 29.091 165 109 3 13 171 80 242 4.80e-14 73.9
MS.gene55928.t1 MTR_4g067290 28.916 166 108 7 6 164 73 235 5.93e-14 71.6
MS.gene55928.t1 MTR_2g098920 35.922 103 63 3 6 106 79 180 6.41e-14 71.6
MS.gene55928.t1 MTR_4g067290 28.916 166 108 7 6 164 75 237 6.63e-14 71.6
MS.gene55928.t1 MTR_1g013060 29.070 172 115 3 2 166 19 190 2.03e-12 66.6
MS.gene55928.t1 MTR_5g076070 29.299 157 107 2 13 165 59 215 2.45e-12 67.4
MS.gene55928.t1 MTR_6g051425 27.222 180 116 6 6 173 13 189 6.94e-12 66.6
MS.gene55928.t1 MTR_0137s0040 50.000 56 27 1 4 58 33 88 1.01e-11 62.0
MS.gene55928.t1 MTR_1g055240 30.973 113 76 1 66 176 25 137 2.26e-11 62.0
MS.gene55928.t1 MTR_6g022080 28.082 146 101 2 19 160 97 242 3.71e-11 63.2
MS.gene55928.t1 MTR_0337s0040 31.858 113 75 1 66 176 75 187 4.06e-11 62.8
MS.gene55928.t1 MTR_7g446520 27.950 161 102 1 10 170 91 237 9.61e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55928.t1 AT4G38180 36.571 175 106 3 4 173 70 244 4.67e-23 101
MS.gene55928.t1 AT2G43280 32.484 157 97 6 6 155 21 175 1.13e-12 67.0

Find 72 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGAGAGTGAATGTTTC+TGG 0.114899 2.3:-57655983 None:intergenic
GAATATGGGTGGAAAATTTA+TGG 0.170586 2.3:+57654411 MS.gene55928:CDS
TGGAAATTTCACAATGATTA+TGG 0.214112 2.3:+57654208 MS.gene55928:CDS
ATGGCGGAAGAGTTGGATTT+GGG 0.244063 2.3:+57654227 MS.gene55928:CDS
AAAGTTGAACATTAAGAATA+TGG 0.247737 2.3:+57654396 MS.gene55928:CDS
TACCATTGTATAACTCATAT+TGG 0.265727 2.3:-57656482 None:intergenic
AGTCTCTTGTCTCGGATTGA+TGG 0.305807 2.3:-57654356 None:intergenic
TTCACTTTGCAAATACTTGT+TGG 0.315110 2.3:-57656055 None:intergenic
AATGACACTCTAAATCAATT+TGG 0.318679 2.3:+57656623 MS.gene55928:CDS
TATGGCGGAAGAGTTGGATT+TGG 0.342801 2.3:+57654226 MS.gene55928:CDS
CAACATTGTATAACTCATAT+TGG 0.344940 2.3:-57656422 None:intergenic
CTTCAGCAGCTATCCTAATA+AGG 0.348433 2.3:-57655949 None:intergenic
TCAAATATCATTTCCAACTT+TGG 0.350927 2.3:-57654169 None:intergenic
ACCATTGTATAACTCATATT+GGG 0.352366 2.3:-57656481 None:intergenic
TATAGAAAATGGAAGAAGAT+TGG 0.353848 2.3:+57654143 None:intergenic
GTTGCTAAAGTTAAAGAGAT+TGG 0.375112 2.3:+57656085 MS.gene55928:CDS
CTCGAAAGCTTCAAAAGTTC+AGG 0.376308 2.3:+57656228 MS.gene55928:CDS
CAACATTGTATACCTCATAT+TGG 0.381744 2.3:-57656362 None:intergenic
GTCTGCGAAAATCGGATAAA+CGG 0.388247 2.3:+57654323 MS.gene55928:CDS
ATCTCATTGTAGCGTTGCAC+TGG 0.388580 2.3:-57655917 None:intergenic
AGAATTATCTCCGGAAGAAA+AGG 0.399516 2.3:+57654641 MS.gene55928:CDS
TAAAGAAGGTCTGCGAAAAT+CGG 0.416096 2.3:+57654315 MS.gene55928:CDS
TTGATAGCGTTGAAGATGCT+TGG 0.424997 2.3:+57654188 MS.gene55928:CDS
ATGTTTGTTTGTTCTAAAGA+AGG 0.445537 2.3:+57654301 MS.gene55928:CDS
AATGATTATGGCGGAAGAGT+TGG 0.449309 2.3:+57654220 MS.gene55928:CDS
TTTCTCGTGTATGTAAATCA+TGG 0.453503 2.3:-57654459 None:intergenic
GAAGAGTTGGATTTGGGGTG+CGG 0.464909 2.3:+57654233 MS.gene55928:CDS
AGAACAAACAAACATGTAAG+AGG 0.465472 2.3:-57654293 None:intergenic
TCTGCGAAAATCGGATAAAC+GGG 0.470131 2.3:+57654324 MS.gene55928:CDS
AAGTTGCTAATGAATTGAAT+AGG 0.479746 2.3:+57656008 MS.gene55928:CDS
ATTGATTTAGCTGATGATGC+TGG 0.485268 2.3:+57654535 MS.gene55928:CDS
AGTGGGAGGTAGTACTAACT+TGG 0.497157 2.3:+57654597 MS.gene55928:CDS
ACAACATTGAACAACTCATA+AGG 0.506288 2.3:+57656787 MS.gene55928:CDS
TTTGTCCTAGTCTCTTGTCT+CGG 0.517395 2.3:-57654364 None:intergenic
TCTCATTGTAGCGTTGCACT+GGG 0.520073 2.3:-57655916 None:intergenic
AGAAGATTGGAAACCAAAGT+TGG 0.520792 2.3:+57654156 MS.gene55928:CDS
GATGGTTCGTCAAAAGCAAA+AGG 0.526235 2.3:+57656118 MS.gene55928:CDS
CAATGGTGATTCACAAAGCC+AGG 0.528106 2.3:+57656509 MS.gene55928:CDS
TGAATTGAATAGGCACTTGG+TGG 0.531507 2.3:+57656018 MS.gene55928:CDS
ACAAGACCATGTCCAATATG+AGG 0.537248 2.3:+57656350 MS.gene55928:CDS
AAGTTGAACATTAAGAATAT+GGG 0.540265 2.3:+57654397 MS.gene55928:CDS
GACTTAATGAGCAAAGCAGT+GGG 0.545764 2.3:+57654580 MS.gene55928:CDS
GAATTATCTCCGGAAGAAAA+GGG 0.546525 2.3:+57654642 MS.gene55928:CDS
AGCAGCTATCCTAATAAGGT+GGG 0.548848 2.3:-57655945 None:intergenic
ATTCATTAGCAACTTTGCAA+AGG 0.550164 2.3:-57656000 None:intergenic
TTGATCAAAAGAATTATCTC+CGG 0.552966 2.3:+57654632 MS.gene55928:CDS
CAGCAGCTATCCTAATAAGG+TGG 0.565554 2.3:-57655946 None:intergenic
ATTGGCTTACCACATTGACC+TGG 0.566149 2.3:-57656527 None:intergenic
GAGATTGGAAGTAGCAGTGA+TGG 0.566239 2.3:+57656100 MS.gene55928:CDS
TGGCGGAAGAGTTGGATTTG+GGG 0.568293 2.3:+57654228 MS.gene55928:CDS
TTGAACATTAAGAATATGGG+TGG 0.586016 2.3:+57654400 MS.gene55928:CDS
TGACTTAATGAGCAAAGCAG+TGG 0.594388 2.3:+57654579 MS.gene55928:CDS
TAATGAATTGAATAGGCACT+TGG 0.600308 2.3:+57656015 MS.gene55928:CDS
GCAGCTATCCTAATAAGGTG+GGG 0.604473 2.3:-57655944 None:intergenic
TTATACAATGGTACATACAA+TGG 0.610770 2.3:+57656492 MS.gene55928:CDS
CAGCTATCCTAATAAGGTGG+GGG 0.615168 2.3:-57655943 None:intergenic
TCTCCGGAAGAAAAGGGAGA+GGG 0.620062 2.3:+57654648 MS.gene55928:CDS
ATCTCCGGAAGAAAAGGGAG+AGG 0.630371 2.3:+57654647 MS.gene55928:CDS
ACCCAATATGAGTTATACAA+TGG 0.639187 2.3:+57656480 MS.gene55928:CDS
AAATTTCACAATGATTATGG+CGG 0.642799 2.3:+57654211 MS.gene55928:CDS
TCAATCCGAGACAAGAGACT+AGG 0.643742 2.3:+57654359 MS.gene55928:CDS
CTCCGGAAGAAAAGGGAGAG+GGG 0.648734 2.3:+57654649 MS.gene55928:CDS
TTATACAATGTTGCATACAA+TGG 0.654389 2.3:+57656432 MS.gene55928:CDS
TGTATACCTCATATTGGACA+TGG 0.659711 2.3:-57656356 None:intergenic
GTGGGAGGTAGTACTAACTT+GGG 0.667402 2.3:+57654598 MS.gene55928:CDS
TATGGGTGGAAAATTTATGG+TGG 0.672265 2.3:+57654414 MS.gene55928:CDS
ATGACAGAGGTGATTCACAA+AGG 0.688599 2.3:+57656394 MS.gene55928:CDS
TTAATGAGCAAAGCAGTGGG+AGG 0.694650 2.3:+57654583 MS.gene55928:CDS
TTCACAAAGCCAGGTCAATG+TGG 0.696942 2.3:+57656518 MS.gene55928:CDS
GTTGCATACAATGGTGACAG+AGG 0.705992 2.3:+57656441 MS.gene55928:CDS
CTCATTGTAGCGTTGCACTG+GGG 0.739921 2.3:-57655915 None:intergenic
GTTGCATACAATGATGACAG+AGG 0.780403 2.3:+57656381 MS.gene55928:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTTTTCTTCTTGTA+TGG + chr2.3:57656303-57656322 MS.gene55928:intron 15.0%
!! AAAGTTGAACATTAAGAATA+TGG + chr2.3:57654396-57654415 MS.gene55928:CDS 20.0%
!! AAGTTGAACATTAAGAATAT+GGG + chr2.3:57654397-57654416 MS.gene55928:CDS 20.0%
!! AATTTAATACTACATGTAGT+TGG - chr2.3:57656291-57656310 None:intergenic 20.0%
!! AGAAATAACACAATCAATTA+AGG - chr2.3:57655654-57655673 None:intergenic 20.0%
!!! AATGATTTTATCTTTTATGC+AGG + chr2.3:57656595-57656614 MS.gene55928:intron 20.0%
!!! AATTGATTGTGTTATTTCTA+GGG + chr2.3:57655655-57655674 MS.gene55928:intron 20.0%
!!! TAATTGATTGTGTTATTTCT+AGG + chr2.3:57655654-57655673 MS.gene55928:intron 20.0%
! AAAGGCTTCAAAAAAAAAGA+AGG + chr2.3:57656136-57656155 MS.gene55928:CDS 25.0%
! AAATTTCACAATGATTATGG+CGG + chr2.3:57654211-57654230 MS.gene55928:CDS 25.0%
! AAGAACAATTTGAAGAAGAA+TGG + chr2.3:57655205-57655224 MS.gene55928:intron 25.0%
! AAGTTGCTAATGAATTGAAT+AGG + chr2.3:57656008-57656027 MS.gene55928:CDS 25.0%
! AATGACACTCTAAATCAATT+TGG + chr2.3:57656623-57656642 MS.gene55928:CDS 25.0%
! ACCATTGTATAACTCATATT+GGG - chr2.3:57656484-57656503 None:intergenic 25.0%
! AGCAATATATCTTAAAAAGG+TGG + chr2.3:57655822-57655841 MS.gene55928:intron 25.0%
! ATACTTTCAGAAAAAATTGG+TGG + chr2.3:57654705-57654724 MS.gene55928:intron 25.0%
! CAACATTGTATAACTCATAT+TGG - chr2.3:57656425-57656444 None:intergenic 25.0%
! CACTTAGGAAATTTAATGAA+AGG + chr2.3:57655129-57655148 MS.gene55928:intron 25.0%
! CAGAGCAATATATCTTAAAA+AGG + chr2.3:57655819-57655838 MS.gene55928:intron 25.0%
! GCAATACTTTCAGAAAAAAT+TGG + chr2.3:57654702-57654721 MS.gene55928:intron 25.0%
! TAAATCACGTCATTAGAAAT+TGG - chr2.3:57656702-57656721 None:intergenic 25.0%
! TACCATTGTATAACTCATAT+TGG - chr2.3:57656485-57656504 None:intergenic 25.0%
! TAGGAAATTTAATGAAAGGT+GGG + chr2.3:57655133-57655152 MS.gene55928:intron 25.0%
! TATTCACACAAGAACAAAAA+TGG + chr2.3:57654262-57654281 MS.gene55928:CDS 25.0%
! TCAAATATCATTTCCAACTT+TGG - chr2.3:57654172-57654191 None:intergenic 25.0%
! TGGAAATTTCACAATGATTA+TGG + chr2.3:57654208-57654227 MS.gene55928:CDS 25.0%
! TGGAATTGATCAAAAATAGT+GGG - chr2.3:57655575-57655594 None:intergenic 25.0%
! TTAGGAAATTTAATGAAAGG+TGG + chr2.3:57655132-57655151 MS.gene55928:intron 25.0%
! TTATACAATGGTACATACAA+TGG + chr2.3:57656492-57656511 MS.gene55928:CDS 25.0%
! TTATACAATGTTGCATACAA+TGG + chr2.3:57656432-57656451 MS.gene55928:CDS 25.0%
! TTGATCAAAAGAATTATCTC+CGG + chr2.3:57654632-57654651 MS.gene55928:CDS 25.0%
! TTGGAATTGATCAAAAATAG+TGG - chr2.3:57655576-57655595 None:intergenic 25.0%
! TTTCTATCATGCATATCAAA+TGG + chr2.3:57654738-57654757 MS.gene55928:intron 25.0%
!! ATGAAGAAAGCTTTTACATT+AGG + chr2.3:57655330-57655349 MS.gene55928:intron 25.0%
!!! AAAGCGTTTTAAAAGTTGTT+TGG + chr2.3:57656171-57656190 MS.gene55928:CDS 25.0%
!!! ATGTTTGTTTGTTCTAAAGA+AGG + chr2.3:57654301-57654320 MS.gene55928:CDS 25.0%
!!! CCATCATTTTTCTTGTTTTT+GGG - chr2.3:57656208-57656227 None:intergenic 25.0%
!!! CTTTTTAAGATATATTGCTC+TGG - chr2.3:57655821-57655840 None:intergenic 25.0%
ACCCAATATGAGTTATACAA+TGG + chr2.3:57656480-57656499 MS.gene55928:CDS 30.0%
AGAACAAACAAACATGTAAG+AGG - chr2.3:57654296-57654315 None:intergenic 30.0%
AGGAGAAGGAAAAAAATAGT+TGG + chr2.3:57655262-57655281 MS.gene55928:intron 30.0%
AGTGAGAGTTTATCTAATGT+TGG + chr2.3:57655860-57655879 MS.gene55928:intron 30.0%
ATTCATTAGCAACTTTGCAA+AGG - chr2.3:57656003-57656022 None:intergenic 30.0%
CAACATTGTATACCTCATAT+TGG - chr2.3:57656365-57656384 None:intergenic 30.0%
CCCAAAAACAAGAAAAATGA+TGG + chr2.3:57656205-57656224 MS.gene55928:CDS 30.0%
GAATATGAGTTCTTTAGTCT+CGG - chr2.3:57655518-57655537 None:intergenic 30.0%
GAATATGGGTGGAAAATTTA+TGG + chr2.3:57654411-57654430 MS.gene55928:CDS 30.0%
GCAAAGAATGTACTCTATAA+AGG + chr2.3:57655287-57655306 MS.gene55928:intron 30.0%
GTACTCTATAAAGGAGAAAT+GGG + chr2.3:57655296-57655315 MS.gene55928:intron 30.0%
GTTGCTAAAGTTAAAGAGAT+TGG + chr2.3:57656085-57656104 MS.gene55928:CDS 30.0%
TAATGAATTGAATAGGCACT+TGG + chr2.3:57656015-57656034 MS.gene55928:CDS 30.0%
TACTGATCAAGATCAATCAA+TGG + chr2.3:57655029-57655048 MS.gene55928:intron 30.0%
TCACATACTCATACTGTTAT+TGG - chr2.3:57656548-57656567 None:intergenic 30.0%
TGATATGCATGATAGAAAGT+TGG - chr2.3:57654736-57654755 None:intergenic 30.0%
TGATCAGTAAAAACTGTTTG+AGG - chr2.3:57655018-57655037 None:intergenic 30.0%
TGTACTCTATAAAGGAGAAA+TGG + chr2.3:57655295-57655314 MS.gene55928:intron 30.0%
TTCACTTTGCAAATACTTGT+TGG - chr2.3:57656058-57656077 None:intergenic 30.0%
TTGAACATTAAGAATATGGG+TGG + chr2.3:57654400-57654419 MS.gene55928:CDS 30.0%
TTTCTCGTGTATGTAAATCA+TGG - chr2.3:57654462-57654481 None:intergenic 30.0%
!! ATTTATGGTGGTTGATTTTG+TGG + chr2.3:57654426-57654445 MS.gene55928:CDS 30.0%
!! CTCATTGATTATGAGTGTTT+TGG + chr2.3:57654808-57654827 MS.gene55928:intron 30.0%
!! TAATGTTGGTGTTAGTAATG+TGG + chr2.3:57655874-57655893 MS.gene55928:intron 30.0%
!! TAGTTTTACTCGACTATTGA+TGG + chr2.3:57656652-57656671 MS.gene55928:CDS 30.0%
!! TGAGAGATTTTTCTTTGAGA+TGG - chr2.3:57654499-57654518 None:intergenic 30.0%
!!! GCCATCATTTTTCTTGTTTT+TGG - chr2.3:57656209-57656228 None:intergenic 30.0%
AAAACTCTCAAACTTACGAC+AGG - chr2.3:57655741-57655760 None:intergenic 35.0%
ACTTATGTCTCTGCAATTGT+AGG + chr2.3:57656753-57656772 MS.gene55928:intron 35.0%
AGAAGATTGGAAACCAAAGT+TGG + chr2.3:57654156-57654175 MS.gene55928:CDS 35.0%
AGAATTATCTCCGGAAGAAA+AGG + chr2.3:57654641-57654660 MS.gene55928:CDS 35.0%
CAAACAACTCATACTCATGT+TGG - chr2.3:57655595-57655614 None:intergenic 35.0%
CAAATTCTTTAAGCGCTTTG+AGG + chr2.3:57655430-57655449 MS.gene55928:intron 35.0%
GAATTATCTCCGGAAGAAAA+GGG + chr2.3:57654642-57654661 MS.gene55928:CDS 35.0%
TAAAGAAGGTCTGCGAAAAT+CGG + chr2.3:57654315-57654334 MS.gene55928:CDS 35.0%
TATGGGTGGAAAATTTATGG+TGG + chr2.3:57654414-57654433 MS.gene55928:CDS 35.0%
TGTATACCTCATATTGGACA+TGG - chr2.3:57656359-57656378 None:intergenic 35.0%
! AAACATCTGAGACATACAGA+TGG + chr2.3:57654953-57654972 MS.gene55928:intron 35.0%
! ACCAAATCACCAATGTGTTT+TGG + chr2.3:57654770-57654789 MS.gene55928:intron 35.0%
! ATTGAGGAGCAGTGATTTTT+GGG + chr2.3:57654911-57654930 MS.gene55928:intron 35.0%
! ATTGATTTAGCTGATGATGC+TGG + chr2.3:57654535-57654554 MS.gene55928:CDS 35.0%
! CCAAATCACCAATGTGTTTT+GGG + chr2.3:57654771-57654790 MS.gene55928:intron 35.0%
! GACTTTAAGAAGTGCATGTA+TGG + chr2.3:57655171-57655190 MS.gene55928:intron 35.0%
! TCTTTAGTCTCGGAATCTTT+TGG - chr2.3:57655508-57655527 None:intergenic 35.0%
! TGTCGTAAGTTTGAGAGTTT+TGG + chr2.3:57655740-57655759 MS.gene55928:intron 35.0%
!!! GCTCTTTGAGACATTTTTAG+AGG + chr2.3:57654975-57654994 MS.gene55928:intron 35.0%
AACTCTCCTTGTGAAGTATG+GGG + chr2.3:57655230-57655249 MS.gene55928:intron 40.0%
ACAAGACCATGTCCAATATG+AGG + chr2.3:57656350-57656369 MS.gene55928:CDS 40.0%
AGAACTCTCCTTGTGAAGTA+TGG + chr2.3:57655228-57655247 MS.gene55928:intron 40.0%
AGCAGCTATCCTAATAAGGT+GGG - chr2.3:57655948-57655967 None:intergenic 40.0%
ATGACAGAGGTGATTCACAA+AGG + chr2.3:57656394-57656413 MS.gene55928:CDS 40.0%
CAAAAATCACTGCTCCTCAA+TGG - chr2.3:57654912-57654931 None:intergenic 40.0%
CAAAGGAGAGTGAATGTTTC+TGG - chr2.3:57655986-57656005 None:intergenic 40.0%
CAGAATGGCATCAAACACTT+AGG + chr2.3:57655114-57655133 MS.gene55928:intron 40.0%
CTCGAAAGCTTCAAAAGTTC+AGG + chr2.3:57656228-57656247 MS.gene55928:CDS 40.0%
CTTCAGCAGCTATCCTAATA+AGG - chr2.3:57655952-57655971 None:intergenic 40.0%
GAACTCTCCTTGTGAAGTAT+GGG + chr2.3:57655229-57655248 MS.gene55928:intron 40.0%
GAAGTATGGGGAAATGGAAA+AGG + chr2.3:57655242-57655261 MS.gene55928:intron 40.0%
GACTTAATGAGCAAAGCAGT+GGG + chr2.3:57654580-57654599 MS.gene55928:CDS 40.0%
GATGGTTCGTCAAAAGCAAA+AGG + chr2.3:57656118-57656137 MS.gene55928:CDS 40.0%
GTCTGCGAAAATCGGATAAA+CGG + chr2.3:57654323-57654342 MS.gene55928:CDS 40.0%
GTTGCATACAATGATGACAG+AGG + chr2.3:57656381-57656400 MS.gene55928:CDS 40.0%
TATGTCTCTGCAATTGTAGG+AGG + chr2.3:57656756-57656775 MS.gene55928:intron 40.0%
TCTGCGAAAATCGGATAAAC+GGG + chr2.3:57654324-57654343 MS.gene55928:CDS 40.0%
TGAATTGAATAGGCACTTGG+TGG + chr2.3:57656018-57656037 MS.gene55928:CDS 40.0%
TGACTTAATGAGCAAAGCAG+TGG + chr2.3:57654579-57654598 MS.gene55928:CDS 40.0%
TTTACCATGGCTTATGCACA+TGG + chr2.3:57655082-57655101 MS.gene55928:intron 40.0%
TTTGTCCTAGTCTCTTGTCT+CGG - chr2.3:57654367-57654386 None:intergenic 40.0%
! AATGATTATGGCGGAAGAGT+TGG + chr2.3:57654220-57654239 MS.gene55928:CDS 40.0%
! CATTGAGGAGCAGTGATTTT+TGG + chr2.3:57654910-57654929 MS.gene55928:intron 40.0%
! CCCAAAACACATTGGTGATT+TGG - chr2.3:57654774-57654793 None:intergenic 40.0%
! TTGAGGAGCAGTGATTTTTG+GGG + chr2.3:57654912-57654931 MS.gene55928:intron 40.0%
!! TATGGTGGTTGATTTTGTGG+AGG + chr2.3:57654429-57654448 MS.gene55928:CDS 40.0%
!! TTGATAGCGTTGAAGATGCT+TGG + chr2.3:57654188-57654207 MS.gene55928:CDS 40.0%
AAATCACTGCTCCTCAATGG+TGG - chr2.3:57654909-57654928 None:intergenic 45.0%
ACATGGCACTTGATGCAGAA+TGG + chr2.3:57655099-57655118 MS.gene55928:intron 45.0%
AGATTTGCCCCCACCTTATT+AGG + chr2.3:57655936-57655955 MS.gene55928:CDS 45.0%
AGTCTCTTGTCTCGGATTGA+TGG - chr2.3:57654359-57654378 None:intergenic 45.0%
AGTGGGAGGTAGTACTAACT+TGG + chr2.3:57654597-57654616 MS.gene55928:CDS 45.0%
ATCTCATTGTAGCGTTGCAC+TGG - chr2.3:57655920-57655939 None:intergenic 45.0%
CAATGGTGATTCACAAAGCC+AGG + chr2.3:57656509-57656528 MS.gene55928:CDS 45.0%
CAGCAGCTATCCTAATAAGG+TGG - chr2.3:57655949-57655968 None:intergenic 45.0%
CAGCTATCCTAATAAGGTGG+GGG - chr2.3:57655946-57655965 None:intergenic 45.0%
CATAAGCCATGGTAAACTCC+AGG - chr2.3:57655078-57655097 None:intergenic 45.0%
CCATTTCCCCATACTTCACA+AGG - chr2.3:57655239-57655258 None:intergenic 45.0%
CCTTGTGAAGTATGGGGAAA+TGG + chr2.3:57655236-57655255 MS.gene55928:intron 45.0%
GAGATTGGAAGTAGCAGTGA+TGG + chr2.3:57656100-57656119 MS.gene55928:CDS 45.0%
GCAGCTATCCTAATAAGGTG+GGG - chr2.3:57655947-57655966 None:intergenic 45.0%
GTGGGAGGTAGTACTAACTT+GGG + chr2.3:57654598-57654617 MS.gene55928:CDS 45.0%
GTTATGCCTGGAGTTTACCA+TGG + chr2.3:57655069-57655088 MS.gene55928:intron 45.0%
GTTGCATACAATGGTGACAG+AGG + chr2.3:57656441-57656460 MS.gene55928:CDS 45.0%
TAGACCACTTGCAGTGTTCT+CGG + chr2.3:57654876-57654895 MS.gene55928:intron 45.0%
TCAATCAATGGCGAACGCAT+TGG + chr2.3:57655041-57655060 MS.gene55928:intron 45.0%
TCAATCCGAGACAAGAGACT+AGG + chr2.3:57654359-57654378 MS.gene55928:CDS 45.0%
TCGGGATTTAACCACCATTG+AGG + chr2.3:57654895-57654914 MS.gene55928:intron 45.0%
TCTCATTGTAGCGTTGCACT+GGG - chr2.3:57655919-57655938 None:intergenic 45.0%
TGCATCTGCCCAAAACACAT+TGG - chr2.3:57654782-57654801 None:intergenic 45.0%
TGGGGAAATGGAAAAGGAGA+AGG + chr2.3:57655248-57655267 MS.gene55928:intron 45.0%
TTAATGAGCAAAGCAGTGGG+AGG + chr2.3:57654583-57654602 MS.gene55928:CDS 45.0%
TTCACAAAGCCAGGTCAATG+TGG + chr2.3:57656518-57656537 MS.gene55928:CDS 45.0%
! ATGGCGGAAGAGTTGGATTT+GGG + chr2.3:57654227-57654246 MS.gene55928:CDS 45.0%
! ATTGGCTTACCACATTGACC+TGG - chr2.3:57656530-57656549 None:intergenic 45.0%
! TATGGCGGAAGAGTTGGATT+TGG + chr2.3:57654226-57654245 MS.gene55928:CDS 45.0%
!! AATGTGTTTTGGGCAGATGC+AGG + chr2.3:57654781-57654800 MS.gene55928:intron 45.0%
!! CTTTAAGCGCTTTGAGGATG+TGG + chr2.3:57655436-57655455 MS.gene55928:intron 45.0%
!! GTGGAGAGTGTCATACGATT+TGG + chr2.3:57655694-57655713 MS.gene55928:intron 45.0%
AATCCCGAGAACACTGCAAG+TGG - chr2.3:57654883-57654902 None:intergenic 50.0%
AGACCACTTGCAGTGTTCTC+GGG + chr2.3:57654877-57654896 MS.gene55928:intron 50.0%
AGTGCCATGTGCATAAGCCA+TGG - chr2.3:57655089-57655108 None:intergenic 50.0%
ATCTCCGGAAGAAAAGGGAG+AGG + chr2.3:57654647-57654666 MS.gene55928:CDS 50.0%
CTCAAACTTACGACAGGAGC+AGG - chr2.3:57655735-57655754 None:intergenic 50.0%
CTCATTGTAGCGTTGCACTG+GGG - chr2.3:57655918-57655937 None:intergenic 50.0%
CTTACGACAGGAGCAGGAAA+TGG - chr2.3:57655729-57655748 None:intergenic 50.0%
GAAGAAAAGGGAGAGGGGTA+TGG + chr2.3:57654654-57654673 MS.gene55928:intron 50.0%
GTCTCTGCAATTGTAGGAGG+AGG + chr2.3:57656759-57656778 MS.gene55928:intron 50.0%
TCTCCGGAAGAAAAGGGAGA+GGG + chr2.3:57654648-57654667 MS.gene55928:CDS 50.0%
TGGCGGAAGAGTTGGATTTG+GGG + chr2.3:57654228-57654247 MS.gene55928:CDS 50.0%
! AAAAGGGAGAGGGGTATGGT+AGG + chr2.3:57654658-57654677 MS.gene55928:intron 50.0%
! GAAGAGTTGGATTTGGGGTG+CGG + chr2.3:57654233-57654252 MS.gene55928:CDS 50.0%
! GGGAGAGTGATTTGCAAGAG+TGG + chr2.3:57655675-57655694 MS.gene55928:intron 50.0%
! TACCCCTCTCCCTTTTCTTC+CGG - chr2.3:57654654-57654673 None:intergenic 50.0%
!! AATGGCGAACGCATTGGTTG+AGG + chr2.3:57655047-57655066 MS.gene55928:intron 50.0%
!! GCATTGGTTGAGGTTATGCC+TGG + chr2.3:57655057-57655076 MS.gene55928:intron 50.0%
CTCCGGAAGAAAAGGGAGAG+GGG + chr2.3:57654649-57654668 MS.gene55928:CDS 55.0%
GGTATGGTAGGTGGGGAAGT+CGG + chr2.3:57654670-57654689 MS.gene55928:intron 55.0%
! AGGGAGAGGGGTATGGTAGG+TGG + chr2.3:57654661-57654680 MS.gene55928:intron 60.0%
! GGAGAGGGGTATGGTAGGTG+GGG + chr2.3:57654663-57654682 MS.gene55928:intron 60.0%
! GGGAGAGGGGTATGGTAGGT+GGG + chr2.3:57654662-57654681 MS.gene55928:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 57654151 57656807 57654151 ID=MS.gene55928
chr2.3 mRNA 57654151 57656807 57654151 ID=MS.gene55928.t1;Parent=MS.gene55928
chr2.3 exon 57654151 57654670 57654151 ID=MS.gene55928.t1.exon1;Parent=MS.gene55928.t1
chr2.3 CDS 57654151 57654670 57654151 ID=cds.MS.gene55928.t1;Parent=MS.gene55928.t1
chr2.3 exon 57655900 57656249 57655900 ID=MS.gene55928.t1.exon2;Parent=MS.gene55928.t1
chr2.3 CDS 57655900 57656249 57655900 ID=cds.MS.gene55928.t1;Parent=MS.gene55928.t1
chr2.3 exon 57656333 57656539 57656333 ID=MS.gene55928.t1.exon3;Parent=MS.gene55928.t1
chr2.3 CDS 57656333 57656539 57656333 ID=cds.MS.gene55928.t1;Parent=MS.gene55928.t1
chr2.3 exon 57656617 57656673 57656617 ID=MS.gene55928.t1.exon4;Parent=MS.gene55928.t1
chr2.3 CDS 57656617 57656673 57656617 ID=cds.MS.gene55928.t1;Parent=MS.gene55928.t1
chr2.3 exon 57656775 57656807 57656775 ID=MS.gene55928.t1.exon5;Parent=MS.gene55928.t1
chr2.3 CDS 57656775 57656807 57656775 ID=cds.MS.gene55928.t1;Parent=MS.gene55928.t1
Gene Sequence

>MS.gene55928

ATGGAAGAAGATTGGAAACCAAAGTTGGAAATGATATTTGATAGCGTTGAAGATGCTTGGAAATTTCACAATGATTATGGCGGAAGAGTTGGATTTGGGGTGCGGAAACAATATTCACACAAGAACAAAAATGGTATAATTACCTCTTACATGTTTGTTTGTTCTAAAGAAGGTCTGCGAAAATCGGATAAACGGGATTATAAAACCATCAATCCGAGACAAGAGACTAGGACAAATTGTAAAGCAAAGTTGAACATTAAGAATATGGGTGGAAAATTTATGGTGGTTGATTTTGTGGAGGAACATAACCATGATTTACATACACGAGAAACAACTGATATGTTGCCATCTCAAAGAAAAATCTCTCAAATTCAATGTCAGCAAATTGATTTAGCTGATGATGCTGGACTACAACAGAGAAAGTCATTTGACTTAATGAGCAAAGCAGTGGGAGGTAGTACTAACTTGGGATTTACTCGTGTTGATCAAAAGAATTATCTCCGGAAGAAAAGGGAGAGGGGTATGGTAGGTGGGGAAGTCGGTTATCTGTTGCAATACTTTCAGAAAAAATTGGTGGAAAATCCAACTTTCTATCATGCATATCAAATGGATACTGAAGACCAAATCACCAATGTGTTTTGGGCAGATGCAGGTATGCTCATTGATTATGAGTGTTTTGGTGATGTGATTTCTCTTGATTCAACATATTGCACAAATAGTTCACATAGACCACTTGCAGTGTTCTCGGGATTTAACCACCATTGAGGAGCAGTGATTTTTGGGGCTGCATTGTTGTATGACGAAACATCTGAGACATACAGATGGCTCTTTGAGACATTTTTAGAGGCTCATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGATCAATCAATGGCGAACGCATTGGTTGAGGTTATGCCTGGAGTTTACCATGGCTTATGCACATGGCACTTGATGCAGAATGGCATCAAACACTTAGGAAATTTAATGAAAGGTGGGTCATGTTTTCTTAGTGACTTTAAGAAGTGCATGTATGGCTATGAAAATGAAGAACAATTTGAAGAAGAATGGAGAACTCTCCTTGTGAAGTATGGGGAAATGGAAAAGGAGAAGGAAAAAAATAGTTGGCTGCAAAGAATGTACTCTATAAAGGAGAAATGGGCATCATGTTACATGAAGAAAGCTTTTACATTAGGCATGCGAAGTACTCAACTAAGTGAAAGTGTGAATGCAGATATTAAAAGTTTTATCAATGTGTCAAGTTGAATATTATCAAATTCTTTAAGCGCTTTGAGGATGTGGTACAACAAAAGCGAAAAAACGAATTGAAGTGTGAATATGAAGCACGCCAAAAGATTCCGAGACTAAAGAACTCATATTCACATATCTTGCAGCAAGTGTCTAAGCTTTACACTCCCACTATTTTTGATCAATTCCAACATGAGTATGAGTTGTTTGAAGCATATTTTGTGAAAAACATTAACACACAAGCAACCTTAATTGATTGTGTTATTTCTAGGGAGAGTGATTTGCAAGAGTGGAGAGTGTCATACGATTTGGATAATAATTCCATTTCCTGCTCCTGTCGTAAGTTTGAGAGTTTTGGCATACTTTGTTGTCACTGTTTACGATTATTTATTCATATGAATGTCAGATCAGTTCCAGAGCAATATATCTTAAAAAGGTGGACAAAGTTAGCAAGAAGTGAGAGTTTATCTAATGTTGGTGTTAGTAATGTGGTAGAAGATGTTGATCTATCCCCAGTGCAACGCTACAATGAGATTTGCCCCCACCTTATTAGGATAGCTGCTGAAGCATGTAGAAATCCAGAAACATTCACTCTCCTTTGCAAAGTTGCTAATGAATTGAATAGGCACTTGGTGGAATTTCAACACAATCCAACAAGTATTTGCAAAGTGAATGAGTTTGTTGCTAAAGTTAAAGAGATTGGAAGTAGCAGTGATGGTTCGTCAAAAGCAAAAGGCTTCAAAAAAAAAGAAGGCACAAGACGTACAAAGCGTTTTAAAAGTTGTTTGGAGCGCGAACTTCCCAAAAACAAGAAAAATGATGGCTCGAAAGCTTCAAAAGTTCAGGTAGTTTTAAATTACTGAATATGCATATTGTCTTTTTTCCAACTACATGTAGTATTAAATTTTTCTTCTTGTATGGCATGTAGAACTCTAAAAAGCATACACAAGACCATGTCCAATATGAGGTATACAATGTTGCATACAATGATGACAGAGGTGATTCACAAAGGCAAGTCCAATATGAGTTATACAATGTTGCATACAATGGTGACAGAGGTGATTCACAAAGTCAAACCCAATATGAGTTATACAATGGTACATACAATGGTGATTCACAAAGCCAGGTCAATGTGGTAAGCCAATAACAGTATGAGTATGTGAATGTACAAAAAATAAATTTAGTGATTAAATGATTTTATCTTTTATGCAGGATAATAATGACACTCTAAATCAATTTGGTGTTACTAGTTTTACTCGACTATTGATGGTAAGTTTTAGCAACTATATAATTTCCAATTTCTAATGACGTGATTTATCTTAATATCTACATTTAAATTAAATTATTAACTTATGTCTCTGCAATTGTAGGAGGAGGATGTCACAACATTGAACAACTCATAA
Protein sequence

>MS.gene55928.t1

MEEDWKPKLEMIFDSVEDAWKFHNDYGGRVGFGVRKQYSHKNKNGIITSYMFVCSKEGLRKSDKRDYKTINPRQETRTNCKAKLNIKNMGGKFMVVDFVEEHNHDLHTRETTDMLPSQRKISQIQCQQIDLADDAGLQQRKSFDLMSKAVGGSTNLGFTRVDQKNYLRKKREREDVDLSPVQRYNEICPHLIRIAAEACRNPETFTLLCKVANELNRHLVEFQHNPTSICKVNEFVAKVKEIGSSSDGSSKAKGFKKKEGTRRTKRFKSCLERELPKNKKNDGSKASKVQNSKKHTQDHVQYEVYNVAYNDDRGDSQRQVQYELYNVAYNGDRGDSQSQTQYELYNGTYNGDSQSQVNVDNNDTLNQFGVTSFTRLLMEEDVTTLNNS