AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55999

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55999.t1 MTR_2g034250 91.391 604 31 4 1 600 1 587 0.0 1110
MS.gene55999.t1 MTR_2g034260 82.862 601 87 6 1 600 1 586 0.0 1001
MS.gene55999.t1 MTR_2g034280 78.405 602 103 7 1 600 1 577 0.0 938
MS.gene55999.t1 MTR_7g109580 44.581 489 247 6 112 600 92 556 2.23e-134 404
MS.gene55999.t1 MTR_1g086970 44.246 504 248 11 103 600 4 480 6.79e-130 390
MS.gene55999.t1 MTR_3g065980 29.104 402 254 6 210 599 159 541 2.04e-54 194
MS.gene55999.t1 MTR_7g027190 30.446 404 251 9 209 598 286 673 9.07e-46 172
MS.gene55999.t1 MTR_8g442410 30.412 388 255 9 216 598 148 525 1.42e-42 161
MS.gene55999.t1 MTR_4g104020 29.064 406 264 10 205 598 127 520 1.43e-42 160
MS.gene55999.t1 MTR_4g064150 29.114 395 257 9 213 597 351 732 3.72e-41 159
MS.gene55999.t1 MTR_4g064200 29.124 388 250 10 218 597 279 649 6.71e-40 155
MS.gene55999.t1 MTR_7g074650 29.223 373 241 10 227 598 442 792 3.83e-38 150
MS.gene55999.t1 MTR_7g062120 27.877 391 263 7 214 598 363 740 1.77e-37 148
MS.gene55999.t1 MTR_2g097463 27.820 399 240 8 218 597 285 654 2.63e-37 147
MS.gene55999.t1 MTR_4g102790 28.312 385 255 10 224 600 293 664 5.21e-37 147
MS.gene55999.t1 MTR_2g026250 26.615 387 265 7 218 598 223 596 1.27e-36 145
MS.gene55999.t1 MTR_2g097473 28.900 391 246 9 218 597 284 653 1.88e-36 145
MS.gene55999.t1 MTR_4g064120 27.461 386 259 8 212 588 243 616 4.97e-36 143
MS.gene55999.t1 MTR_4g064160 25.823 395 256 7 218 597 311 683 6.29e-36 143
MS.gene55999.t1 MTR_4g133660 25.907 386 267 8 218 597 170 542 1.46e-35 141
MS.gene55999.t1 MTR_5g094450 27.062 388 261 9 220 598 158 532 2.37e-35 140
MS.gene55999.t1 MTR_2g097467 28.021 389 252 8 218 597 284 653 3.03e-35 141
MS.gene55999.t1 MTR_5g097480 27.485 342 226 7 220 553 174 501 4.39e-35 139
MS.gene55999.t1 MTR_4g064180 27.344 384 262 7 212 588 243 616 1.05e-34 139
MS.gene55999.t1 MTR_2g097410 27.089 395 261 8 214 597 362 740 1.22e-34 140
MS.gene55999.t1 MTR_3g056110 27.202 386 259 7 220 598 172 542 2.18e-34 137
MS.gene55999.t1 MTR_2g097390 25.000 388 272 6 215 597 267 640 1.81e-33 135
MS.gene55999.t1 MTR_2g097350 25.773 388 269 6 215 597 266 639 2.91e-33 135
MS.gene55999.t1 MTR_4g077760 26.234 385 259 9 220 598 190 555 9.25e-33 133
MS.gene55999.t1 MTR_3g022830 26.591 440 231 8 224 599 26 437 2.16e-32 130
MS.gene55999.t1 MTR_2g097310 24.742 388 273 6 215 597 264 637 3.80e-32 132
MS.gene55999.t1 MTR_4g076020 27.851 377 232 10 227 598 88 429 7.70e-32 128
MS.gene55999.t1 MTR_3g072710 26.196 397 274 9 213 597 110 499 8.95e-32 129
MS.gene55999.t1 MTR_2g082090 26.042 384 264 8 220 597 209 578 5.42e-31 128
MS.gene55999.t1 MTR_1g069725 26.225 408 269 11 193 597 84 462 1.54e-30 125
MS.gene55999.t1 MTR_3g089055 26.463 393 245 10 224 598 199 565 1.11e-29 124
MS.gene55999.t1 MTR_3g089055 26.463 393 245 10 224 598 204 570 1.15e-29 124
MS.gene55999.t1 MTR_1g029420 24.737 380 268 6 224 598 226 592 1.50e-29 124
MS.gene55999.t1 MTR_2g097380 25.549 364 223 9 239 597 240 560 4.56e-28 119
MS.gene55999.t1 MTR_5g058860 25.428 409 280 10 205 597 97 496 1.24e-27 117
MS.gene55999.t1 MTR_1g096030 25.542 415 265 12 208 598 65 459 2.91e-26 112
MS.gene55999.t1 MTR_4g097080 23.308 399 288 5 203 598 120 503 2.56e-25 110
MS.gene55999.t1 MTR_8g093070 26.485 404 247 15 210 597 126 495 1.97e-22 101
MS.gene55999.t1 MTR_4g076140 35.099 151 97 1 448 598 320 469 1.45e-21 98.6
MS.gene55999.t1 MTR_4g076140 28.028 289 179 9 184 460 1 272 1.42e-17 86.3
MS.gene55999.t1 MTR_7g057230 26.277 411 260 12 205 597 271 656 2.04e-21 99.0
MS.gene55999.t1 MTR_5g015490 23.773 387 272 8 224 598 115 490 4.92e-21 97.1
MS.gene55999.t1 MTR_5g009080 32.237 152 102 1 447 598 328 478 7.19e-21 96.3
MS.gene55999.t1 MTR_5g009080 28.629 248 161 6 199 446 33 264 2.06e-20 95.1
MS.gene55999.t1 MTR_6g047750 25.564 399 245 14 222 598 294 662 1.69e-19 93.2
MS.gene55999.t1 MTR_2g099110 26.207 290 197 7 224 509 75 351 2.23e-19 91.7
MS.gene55999.t1 MTR_4g026485 24.479 384 262 11 219 598 265 624 1.44e-17 86.7
MS.gene55999.t1 MTR_0092s0100 23.885 381 269 9 219 598 371 731 3.87e-16 82.4
MS.gene55999.t1 MTR_0092s0100 23.885 381 269 9 219 598 368 728 4.10e-16 82.4
MS.gene55999.t1 MTR_8g020840 19.059 404 290 9 216 599 163 549 1.70e-13 73.9
MS.gene55999.t1 MTR_8g077940 24.432 352 236 11 222 565 181 510 1.24e-12 70.9
MS.gene55999.t1 MTR_2g089100 20.649 339 225 8 224 531 53 378 6.64e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55999.t1 AT3G03450 30.280 393 255 7 210 599 170 546 5.96e-55 195
MS.gene55999.t1 AT2G01570 29.592 392 254 6 210 599 211 582 6.33e-54 193
MS.gene55999.t1 AT5G17490 29.563 389 249 8 214 599 151 517 6.24e-52 187
MS.gene55999.t1 AT1G66350 29.563 389 248 6 212 599 144 507 1.98e-51 185
MS.gene55999.t1 AT1G14920 29.592 392 254 6 210 599 159 530 2.57e-51 185
MS.gene55999.t1 AT1G07530 29.073 399 263 6 206 597 379 764 6.79e-43 165
MS.gene55999.t1 AT3G46600 30.990 384 239 9 224 598 5 371 1.16e-42 157
MS.gene55999.t1 AT3G46600 30.612 392 246 9 216 598 205 579 5.16e-42 160
MS.gene55999.t1 AT5G59450 31.122 392 244 11 218 598 222 598 5.51e-42 160
MS.gene55999.t1 AT3G46600 30.612 392 246 9 216 598 173 547 8.11e-42 159
MS.gene55999.t1 AT5G41920 29.337 392 253 9 210 598 30 400 2.00e-41 155
MS.gene55999.t1 AT4G17230 27.720 386 257 8 220 598 155 525 1.15e-39 152
MS.gene55999.t1 AT4G17230 27.720 386 257 8 220 598 155 525 1.15e-39 152
MS.gene55999.t1 AT2G29060 28.389 391 260 7 215 597 276 654 1.38e-39 154
MS.gene55999.t1 AT2G29060 28.389 391 260 7 215 597 313 691 1.55e-39 154
MS.gene55999.t1 AT3G54220 29.570 372 242 9 227 597 297 649 6.46e-38 149
MS.gene55999.t1 AT1G55580 29.227 414 249 11 220 598 41 445 7.14e-38 146
MS.gene55999.t1 AT2G29065 26.963 382 264 7 224 597 253 627 2.35e-37 147
MS.gene55999.t1 AT1G07520 26.551 403 268 9 209 597 140 528 5.61e-37 145
MS.gene55999.t1 AT1G07520 26.551 403 268 9 209 597 140 528 5.61e-37 145
MS.gene55999.t1 AT1G07520 26.551 403 268 9 209 597 304 692 9.94e-37 146
MS.gene55999.t1 AT1G07520 26.551 403 268 9 209 597 305 693 1.07e-36 146
MS.gene55999.t1 AT5G66770 27.569 399 260 10 211 598 204 584 2.39e-35 141
MS.gene55999.t1 AT2G37650 28.070 399 250 11 214 598 326 701 9.15e-34 137
MS.gene55999.t1 AT1G63100 26.316 399 264 9 215 597 269 653 1.18e-33 136
MS.gene55999.t1 AT1G63100 26.316 399 264 9 215 597 244 628 1.49e-33 136
MS.gene55999.t1 AT2G37650 28.070 399 250 11 214 598 338 713 1.60e-33 136
MS.gene55999.t1 AT1G50600 26.371 383 258 8 224 598 160 526 1.28e-32 132
MS.gene55999.t1 AT5G48150 26.347 334 228 6 220 548 119 439 1.41e-32 131
MS.gene55999.t1 AT5G48150 26.347 334 228 6 220 548 119 439 1.41e-32 131
MS.gene55999.t1 AT5G48150 26.347 334 228 6 220 548 119 439 1.41e-32 131
MS.gene55999.t1 AT5G48150 26.347 334 228 6 220 548 119 439 1.41e-32 131
MS.gene55999.t1 AT1G50600 26.371 383 258 8 224 598 231 597 3.08e-32 132
MS.gene55999.t1 AT1G50600 26.371 383 258 8 224 598 235 601 3.13e-32 132
MS.gene55999.t1 AT2G04890 24.538 379 263 7 224 598 54 413 2.45e-31 126
MS.gene55999.t1 AT3G50650 27.747 364 239 9 243 598 195 542 3.80e-30 125
MS.gene55999.t1 AT4G08250 26.225 408 268 13 204 597 88 476 1.10e-27 117
MS.gene55999.t1 AT1G21450 26.554 354 231 9 215 555 214 551 1.03e-23 105
MS.gene55999.t1 AT1G50420 29.851 268 167 8 187 447 15 268 1.64e-20 95.5
MS.gene55999.t1 AT1G50420 32.278 158 96 3 446 598 328 479 1.17e-19 92.8
MS.gene55999.t1 AT2G45160 25.843 356 234 9 250 598 307 639 5.95e-20 94.4
MS.gene55999.t1 AT4G37650 21.649 388 286 7 224 598 147 529 8.51e-19 90.5
MS.gene55999.t1 AT3G49950 24.873 394 259 12 224 597 31 407 2.14e-18 88.2
MS.gene55999.t1 AT4G00150 26.633 398 229 18 218 598 203 554 5.65e-18 87.8
MS.gene55999.t1 AT4G36710 22.816 412 279 12 200 599 102 486 1.93e-17 85.9
MS.gene55999.t1 AT3G60630 24.590 305 208 8 305 598 329 622 2.53e-16 82.8
MS.gene55999.t1 AT5G52510 22.807 399 261 10 222 598 267 640 5.42e-16 82.0
MS.gene55999.t1 AT3G13840 23.051 295 191 9 221 499 145 419 7.70e-11 65.1

Find 74 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCATCCAATGATACATTT+TGG 0.127093 2.3:+56469839 MS.gene55999:CDS
AATGGTCATTGTCTTCTTAT+TGG 0.198735 2.3:+56471512 MS.gene55999:CDS
GAGTCTCTTTGCTCTAATTT+TGG 0.217371 2.3:+56469937 MS.gene55999:CDS
ATTGACATATTGAAGAATTA+TGG 0.245130 2.3:+56470168 MS.gene55999:CDS
CTGTTTCTTTGTCGATTCTT+TGG 0.253189 2.3:-56470587 None:intergenic
TTGATTCTTAATCACCCTTT+TGG 0.265653 2.3:+56470369 MS.gene55999:CDS
CAAACAGAAACAGAGTTAAT+TGG 0.268686 2.3:-56471548 None:intergenic
AGATCCTTGCTAACCTCTTC+AGG 0.285294 2.3:-56470663 None:intergenic
GAAACGGTTCACAAAAGATT+TGG 0.292025 2.3:-56471198 None:intergenic
AAAGTTTCATAATCTTGATA+TGG 0.312751 2.3:-56470033 None:intergenic
TAATGAACCACACGCTTAAC+CGG 0.323577 2.3:-56470546 None:intergenic
ATAACTATATCGAACGAAAA+AGG 0.330493 2.3:-56470984 None:intergenic
ACTAAACCAAAGTCATTAAC+TGG 0.333013 2.3:-56470240 None:intergenic
TTTCATTTCATTATGCCCTT+TGG 0.334107 2.3:-56469866 None:intergenic
CAATTAACTCTGTTTCTGTT+TGG 0.337936 2.3:+56471549 MS.gene55999:CDS
TCGATTGAAGTGCTTGCATT+AGG 0.355406 2.3:-56470836 None:intergenic
GGTTTCCCAAAATGTATCAT+TGG 0.392828 2.3:-56469845 None:intergenic
CTTCATCCAGTTAATGACTT+TGG 0.401983 2.3:+56470234 MS.gene55999:CDS
TAATTCTTCAATATGTCAAT+TGG 0.407010 2.3:-56470165 None:intergenic
CAATTGGTGCGAAAGGAGTT+TGG 0.413573 2.3:-56470149 None:intergenic
GCGAAAGGAGTTTGGTAGAA+TGG 0.416188 2.3:-56470141 None:intergenic
GTCATTGTCTTCTTATTGGA+TGG 0.423148 2.3:+56471516 MS.gene55999:CDS
CAAAGAATCGACAAAGAAAC+AGG 0.426353 2.3:+56470588 MS.gene55999:CDS
GGGATGTAAAGATTGATGTT+TGG 0.429148 2.3:+56471372 MS.gene55999:CDS
ATGATTGTTTCGAGTTTGTC+TGG 0.434303 2.3:-56471110 None:intergenic
ATTGATCTTGAAATTCGAAA+AGG 0.434936 2.3:+56470798 MS.gene55999:CDS
GTCTTTGTATCAAGCTGAAT+TGG 0.435480 2.3:+56471445 MS.gene55999:CDS
GAAGATCTAGGAGACTATAA+TGG 0.446216 2.3:+56469910 MS.gene55999:CDS
ATCCAACAATATGCAAAAGA+TGG 0.448011 2.3:+56470626 MS.gene55999:CDS
TCGGCGACAACCATTACTAT+AGG 0.455276 2.3:-56471155 None:intergenic
ATCTTCGTAAAGCGCAATCA+TGG 0.458309 2.3:-56470694 None:intergenic
AGGAATATTGTGGCTGAAGA+AGG 0.463268 2.3:+56471332 MS.gene55999:CDS
AAATTCGAAAAGGGTGTCAA+TGG 0.482813 2.3:+56470808 MS.gene55999:CDS
TGTCTTCTTATTGGATGGAA+AGG 0.484516 2.3:+56471521 MS.gene55999:CDS
TCTTGCACATTTGATATGAA+TGG 0.485082 2.3:+56471494 MS.gene55999:CDS
TTGATCTTGAAATTCGAAAA+GGG 0.485532 2.3:+56470799 MS.gene55999:CDS
TCTTCGTCGGAATCTGCATC+AGG 0.487554 2.3:+56470345 MS.gene55999:CDS
TTTCATAATCTTGATATGGT+TGG 0.489594 2.3:-56470029 None:intergenic
AGAAACTCTTCTTCTTGTGA+TGG 0.492366 2.3:-56469976 None:intergenic
TCGTAAAGCGCAATCATGGC+CGG 0.496115 2.3:-56470690 None:intergenic
ATAGAGATCATGAAGCTAGC+TGG 0.499759 2.3:+56470300 MS.gene55999:CDS
ATCTTCGAAGACAGGTAACC+CGG 0.500315 2.3:+56470527 MS.gene55999:CDS
AATATTGAAACTTGACTGAA+TGG 0.501754 2.3:-56470720 None:intergenic
GAGTCTTTATCTTCGAAGAC+AGG 0.510353 2.3:+56470519 MS.gene55999:CDS
GGACACTGGTAAAAGATTGA+AGG 0.513135 2.3:+56470938 MS.gene55999:CDS
CGTAAAGCGCAATCATGGCC+GGG 0.536838 2.3:-56470689 None:intergenic
TTTGTATCAAGCTGAATTGG+TGG 0.548313 2.3:+56471448 MS.gene55999:CDS
AACTATAAATCCTATAGTAA+TGG 0.549134 2.3:+56471145 MS.gene55999:CDS
AGGAGCTGAAAGAAAGACTA+GGG 0.551384 2.3:+56471352 MS.gene55999:CDS
ATCTTTATTTGATCCTGAAG+AGG 0.563321 2.3:+56470650 MS.gene55999:CDS
GTTCAGTTTCAATATAGTTG+AGG 0.565047 2.3:+56469807 MS.gene55999:CDS
TTTCACAAGATTTGGAATGG+TGG 0.567481 2.3:+56471403 MS.gene55999:CDS
CATACAATCATCATCTTCGT+CGG 0.575813 2.3:+56470332 MS.gene55999:CDS
AATATGTCAATTGGTGCGAA+AGG 0.581698 2.3:-56470156 None:intergenic
TCATGGTATTAGGAATATTG+TGG 0.583709 2.3:+56471322 MS.gene55999:CDS
ATTGAACCGTGTCAAAGTGT+AGG 0.585006 2.3:-56470062 None:intergenic
AAGGAGCTGAAAGAAAGACT+AGG 0.592687 2.3:+56471351 MS.gene55999:CDS
ATTGTGATTAGCTTCAATCT+CGG 0.594753 2.3:-56471174 None:intergenic
TGATCCTGAAGAGGTTAGCA+AGG 0.599740 2.3:+56470659 MS.gene55999:CDS
AGGTTATTACCTGATGATGA+AGG 0.603318 2.3:+56470204 MS.gene55999:CDS
AATGAACCACACGCTTAACC+GGG 0.608506 2.3:-56470545 None:intergenic
GTTATCTTTAGAAGCTCGAG+TGG 0.620777 2.3:-56470870 None:intergenic
TCATGAAGCTAGCTGGAACA+AGG 0.621798 2.3:+56470307 MS.gene55999:CDS
CACTTCGAAGCATATAGTTG+AGG 0.629728 2.3:+56470917 MS.gene55999:CDS
AGGTAACCCGGTTAAGCGTG+TGG 0.631363 2.3:+56470539 MS.gene55999:CDS
AAGATAACAGCTATCGAGAG+CGG 0.637602 2.3:+56470885 MS.gene55999:CDS
ATATTGAAGAATTATGGCAA+AGG 0.640071 2.3:+56470174 MS.gene55999:CDS
AAGCATATAGTTGAGGACAC+TGG 0.647935 2.3:+56470924 MS.gene55999:CDS
TGATAACCTACACTTTGACA+CGG 0.648404 2.3:+56470056 MS.gene55999:CDS
GGTTAGCAAGGATCTAAACC+CGG 0.656322 2.3:+56470671 MS.gene55999:CDS
ATTATGGCAAAGGATTCAAG+AGG 0.672484 2.3:+56470184 MS.gene55999:CDS
GTGGCTAAAAGATTTCCTTG+TGG 0.676872 2.3:+56471467 MS.gene55999:CDS
AGATTCGGAAGAAACAGTCG+CGG 0.728949 2.3:+56471049 MS.gene55999:CDS
AATGTGCAAGAACATCCACA+AGG 0.743242 2.3:-56471482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTCATAATCTTGATA+TGG - chr2.3:56470036-56470055 None:intergenic 20.0%
!! AACTATAAATCCTATAGTAA+TGG + chr2.3:56471145-56471164 MS.gene55999:CDS 20.0%
!! ATTGACATATTGAAGAATTA+TGG + chr2.3:56470168-56470187 MS.gene55999:CDS 20.0%
!! TAATTCTTCAATATGTCAAT+TGG - chr2.3:56470168-56470187 None:intergenic 20.0%
!!! ATGATACTTTTTTTTATCAC+TGG - chr2.3:56470007-56470026 None:intergenic 20.0%
! AATATTGAAACTTGACTGAA+TGG - chr2.3:56470723-56470742 None:intergenic 25.0%
! ATAACTATATCGAACGAAAA+AGG - chr2.3:56470987-56471006 None:intergenic 25.0%
! ATATTGAAGAATTATGGCAA+AGG + chr2.3:56470174-56470193 MS.gene55999:CDS 25.0%
! ATTGATCTTGAAATTCGAAA+AGG + chr2.3:56470798-56470817 MS.gene55999:CDS 25.0%
! TTGATCTTGAAATTCGAAAA+GGG + chr2.3:56470799-56470818 MS.gene55999:CDS 25.0%
! TTTCATAATCTTGATATGGT+TGG - chr2.3:56470032-56470051 None:intergenic 25.0%
!! ATTTTTCACAAGATTTGGAA+TGG + chr2.3:56471400-56471419 MS.gene55999:CDS 25.0%
!! TTCATCCAATGATACATTTT+GGG + chr2.3:56469840-56469859 MS.gene55999:CDS 25.0%
!!! AAAAAAGTGCTTCAATGAAA+CGG - chr2.3:56471217-56471236 None:intergenic 25.0%
!!! AGATCTTTTCAAGATAGATT+CGG + chr2.3:56471034-56471053 MS.gene55999:CDS 25.0%
!!! TGTATTTTAGTCATGGTATT+AGG + chr2.3:56471312-56471331 MS.gene55999:CDS 25.0%
!!! TGTTTTGAGAATTGTATGAA+AGG + chr2.3:56471257-56471276 MS.gene55999:CDS 25.0%
AATGGTCATTGTCTTCTTAT+TGG + chr2.3:56471512-56471531 MS.gene55999:CDS 30.0%
ACTAAACCAAAGTCATTAAC+TGG - chr2.3:56470243-56470262 None:intergenic 30.0%
ATCCAACAATATGCAAAAGA+TGG + chr2.3:56470626-56470645 MS.gene55999:CDS 30.0%
CAAACAGAAACAGAGTTAAT+TGG - chr2.3:56471551-56471570 None:intergenic 30.0%
CAGAGAAAGAAAAACCAAAA+GGG - chr2.3:56470386-56470405 None:intergenic 30.0%
GTTCAGTTTCAATATAGTTG+AGG + chr2.3:56469807-56469826 MS.gene55999:CDS 30.0%
TCATGGTATTAGGAATATTG+TGG + chr2.3:56471322-56471341 MS.gene55999:CDS 30.0%
TCTTGCACATTTGATATGAA+TGG + chr2.3:56471494-56471513 MS.gene55999:CDS 30.0%
TTTCATTTCATTATGCCCTT+TGG - chr2.3:56469869-56469888 None:intergenic 30.0%
! AGTATTTTTCCTTCATCATC+AGG - chr2.3:56470216-56470235 None:intergenic 30.0%
! ATCTTTATTTGATCCTGAAG+AGG + chr2.3:56470650-56470669 MS.gene55999:CDS 30.0%
! CAAAGTGGAAGAATTTTTGT+TGG - chr2.3:56470102-56470121 None:intergenic 30.0%
! GTTCATCCAATGATACATTT+TGG + chr2.3:56469839-56469858 MS.gene55999:CDS 30.0%
! TTCCATCTTTTGCATATTGT+TGG - chr2.3:56470631-56470650 None:intergenic 30.0%
! TTGATTCTTAATCACCCTTT+TGG + chr2.3:56470369-56470388 MS.gene55999:CDS 30.0%
!! AGAGCATTTTTCACAAGATT+TGG + chr2.3:56471395-56471414 MS.gene55999:CDS 30.0%
!! ATACATTTTGGGAAACCAAA+GGG + chr2.3:56469851-56469870 MS.gene55999:CDS 30.0%
!! ATTGTGATTAGCTTCAATCT+CGG - chr2.3:56471177-56471196 None:intergenic 30.0%
!! CAATTAACTCTGTTTCTGTT+TGG + chr2.3:56471549-56471568 MS.gene55999:CDS 30.0%
!!! GAGTCAATGTATTTTAGTCA+TGG + chr2.3:56471305-56471324 MS.gene55999:CDS 30.0%
AATATGTCAATTGGTGCGAA+AGG - chr2.3:56470159-56470178 None:intergenic 35.0%
AGAAACTCTTCTTCTTGTGA+TGG - chr2.3:56469979-56469998 None:intergenic 35.0%
ATTATGGCAAAGGATTCAAG+AGG + chr2.3:56470184-56470203 MS.gene55999:CDS 35.0%
CAAAGAATCGACAAAGAAAC+AGG + chr2.3:56470588-56470607 MS.gene55999:CDS 35.0%
CATACAATCATCATCTTCGT+CGG + chr2.3:56470332-56470351 MS.gene55999:CDS 35.0%
CCAGAGAAAGAAAAACCAAA+AGG - chr2.3:56470387-56470406 None:intergenic 35.0%
CTTCATCCAGTTAATGACTT+TGG + chr2.3:56470234-56470253 MS.gene55999:CDS 35.0%
GAAACGGTTCACAAAAGATT+TGG - chr2.3:56471201-56471220 None:intergenic 35.0%
GAAGATCTAGGAGACTATAA+TGG + chr2.3:56469910-56469929 MS.gene55999:CDS 35.0%
GGGATGTAAAGATTGATGTT+TGG + chr2.3:56471372-56471391 MS.gene55999:CDS 35.0%
GGTTTCCCAAAATGTATCAT+TGG - chr2.3:56469848-56469867 None:intergenic 35.0%
GTCATTGTCTTCTTATTGGA+TGG + chr2.3:56471516-56471535 MS.gene55999:CDS 35.0%
GTCTTTGTATCAAGCTGAAT+TGG + chr2.3:56471445-56471464 MS.gene55999:CDS 35.0%
TCCACTTTGTGACACAAAAA+AGG + chr2.3:56470113-56470132 MS.gene55999:CDS 35.0%
TGATAACCTACACTTTGACA+CGG + chr2.3:56470056-56470075 MS.gene55999:CDS 35.0%
TGTCTTCTTATTGGATGGAA+AGG + chr2.3:56471521-56471540 MS.gene55999:CDS 35.0%
TTTGTATCAAGCTGAATTGG+TGG + chr2.3:56471448-56471467 MS.gene55999:CDS 35.0%
! AGGTTATTACCTGATGATGA+AGG + chr2.3:56470204-56470223 MS.gene55999:CDS 35.0%
! GAGTCTCTTTGCTCTAATTT+TGG + chr2.3:56469937-56469956 MS.gene55999:CDS 35.0%
! TTTCACAAGATTTGGAATGG+TGG + chr2.3:56471403-56471422 MS.gene55999:CDS 35.0%
! TTTTCTGTAGCAGAAGATCT+AGG + chr2.3:56469898-56469917 MS.gene55999:CDS 35.0%
!! AAATTCGAAAAGGGTGTCAA+TGG + chr2.3:56470808-56470827 MS.gene55999:CDS 35.0%
!! ATGATTGTTTCGAGTTTGTC+TGG - chr2.3:56471113-56471132 None:intergenic 35.0%
!! CTGTTTCTTTGTCGATTCTT+TGG - chr2.3:56470590-56470609 None:intergenic 35.0%
!! GATACATTTTGGGAAACCAA+AGG + chr2.3:56469850-56469869 MS.gene55999:CDS 35.0%
!! TTAGCTTGTGCTGAAAAAGT+CGG + chr2.3:56470453-56470472 MS.gene55999:CDS 35.0%
!!! CCTTTTGGTTTTTCTTTCTC+TGG + chr2.3:56470384-56470403 MS.gene55999:CDS 35.0%
!!! TCCTTTTTTGTGTCACAAAG+TGG - chr2.3:56470117-56470136 None:intergenic 35.0%
AAGATAACAGCTATCGAGAG+CGG + chr2.3:56470885-56470904 MS.gene55999:CDS 40.0%
AAGCATATAGTTGAGGACAC+TGG + chr2.3:56470924-56470943 MS.gene55999:CDS 40.0%
AAGGAGCTGAAAGAAAGACT+AGG + chr2.3:56471351-56471370 MS.gene55999:CDS 40.0%
AATGTGCAAGAACATCCACA+AGG - chr2.3:56471485-56471504 None:intergenic 40.0%
AGGAATATTGTGGCTGAAGA+AGG + chr2.3:56471332-56471351 MS.gene55999:CDS 40.0%
AGGAGCTGAAAGAAAGACTA+GGG + chr2.3:56471352-56471371 MS.gene55999:CDS 40.0%
ATAGAGATCATGAAGCTAGC+TGG + chr2.3:56470300-56470319 MS.gene55999:CDS 40.0%
ATCTTCGTAAAGCGCAATCA+TGG - chr2.3:56470697-56470716 None:intergenic 40.0%
ATTGAACCGTGTCAAAGTGT+AGG - chr2.3:56470065-56470084 None:intergenic 40.0%
CACTTCGAAGCATATAGTTG+AGG + chr2.3:56470917-56470936 MS.gene55999:CDS 40.0%
GAGTCTTTATCTTCGAAGAC+AGG + chr2.3:56470519-56470538 MS.gene55999:CDS 40.0%
GGACACTGGTAAAAGATTGA+AGG + chr2.3:56470938-56470957 MS.gene55999:CDS 40.0%
GTGGCTAAAAGATTTCCTTG+TGG + chr2.3:56471467-56471486 MS.gene55999:CDS 40.0%
TAATGAACCACACGCTTAAC+CGG - chr2.3:56470549-56470568 None:intergenic 40.0%
! GTTATCTTTAGAAGCTCGAG+TGG - chr2.3:56470873-56470892 None:intergenic 40.0%
! TCGATTGAAGTGCTTGCATT+AGG - chr2.3:56470839-56470858 None:intergenic 40.0%
AATGAACCACACGCTTAACC+GGG - chr2.3:56470548-56470567 None:intergenic 45.0%
AGATCCTTGCTAACCTCTTC+AGG - chr2.3:56470666-56470685 None:intergenic 45.0%
AGATTCGGAAGAAACAGTCG+CGG + chr2.3:56471049-56471068 MS.gene55999:CDS 45.0%
ATCTTCGAAGACAGGTAACC+CGG + chr2.3:56470527-56470546 MS.gene55999:CDS 45.0%
CAATTGGTGCGAAAGGAGTT+TGG - chr2.3:56470152-56470171 None:intergenic 45.0%
GCGAAAGGAGTTTGGTAGAA+TGG - chr2.3:56470144-56470163 None:intergenic 45.0%
GGTTAGCAAGGATCTAAACC+CGG + chr2.3:56470671-56470690 MS.gene55999:CDS 45.0%
TCATGAAGCTAGCTGGAACA+AGG + chr2.3:56470307-56470326 MS.gene55999:CDS 45.0%
TCGGCGACAACCATTACTAT+AGG - chr2.3:56471158-56471177 None:intergenic 45.0%
TGATCCTGAAGAGGTTAGCA+AGG + chr2.3:56470659-56470678 MS.gene55999:CDS 45.0%
TCGTAAAGCGCAATCATGGC+CGG - chr2.3:56470693-56470712 None:intergenic 50.0%
TCTTCGTCGGAATCTGCATC+AGG + chr2.3:56470345-56470364 MS.gene55999:CDS 50.0%
AGGTAACCCGGTTAAGCGTG+TGG + chr2.3:56470539-56470558 MS.gene55999:CDS 55.0%
CGTAAAGCGCAATCATGGCC+GGG - chr2.3:56470692-56470711 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 56469781 56471583 56469781 ID=MS.gene55999
chr2.3 mRNA 56469781 56471583 56469781 ID=MS.gene55999.t1;Parent=MS.gene55999
chr2.3 exon 56469781 56471583 56469781 ID=MS.gene55999.t1.exon1;Parent=MS.gene55999.t1
chr2.3 CDS 56469781 56471583 56469781 ID=cds.MS.gene55999.t1;Parent=MS.gene55999.t1
Gene Sequence

>MS.gene55999

ATGGAAAACTTGTGCAATTTTGATGAGTTCAGTTTCAATATAGTTGAGGATAAACTTAGTTCATCCAATGATACATTTTGGGAAACCAAAGGGCATAATGAAATGAAAAATGTACAATTTTCTGTAGCAGAAGATCTAGGAGACTATAATGGAATTGAGTCTCTTTGCTCTAATTTTGGTTTCTTTCAAGATGATCCATCACAAGAAGAAGAGTTTCTTCTTTCCAGTGATAAAAAAAAGTATCATCACCAACCATATCAAGATTATGAAACTTTTGATAACCTACACTTTGACACGGTTCAATTTGATGAACAATGTCCAACAAAAATTCTTCCACTTTGTGACACAAAAAAGGACAAACCATTCTACCAAACTCCTTTCGCACCAATTGACATATTGAAGAATTATGGCAAAGGATTCAAGAGGTTATTACCTGATGATGAAGGAAAAATACTTCATCCAGTTAATGACTTTGGTTTAGTCACAAATAATGAAAATGAGAGAAAGTTGTTGTCAACTATAGAGATCATGAAGCTAGCTGGAACAAGGTTCATACAATCATCATCTTCGTCGGAATCTGCATCAGGTTTGATTCTTAATCACCCTTTTGGTTTTTCTTTCTCTGGTTTATCTGATGAAGAGAAAGAAGATGTTTCACTTGCTGAATCACTCTTAGCTTGTGCTGAAAAAGTCGGATATCAACAATATGAACGCGCTAGAAAATTGTTGTCACAAATCGAGTCTTTATCTTCGAAGACAGGTAACCCGGTTAAGCGTGTGGTTCATTATTTTGCTGAAGCTCTTCGCCAAAGAATCGACAAAGAAACAGGACGCTTTTCTGTTTCATCCAACAATATGCAAAAGATGGAATCTTTATTTGATCCTGAAGAGGTTAGCAAGGATCTAAACCCGGCCATGATTGCGCTTTACGAAGATCTTCCATTCAGTCAAGTTTCAATATTCACATGTGTACAAGCTTTATTAGAAAATGTAAGTGATGCAAAGAAGATTCATGTTATTGATCTTGAAATTCGAAAAGGGTGTCAATGGACAATCCTAATGCAAGCACTTCAATCGAGAAACGAATGTCCACTCGAGCTTCTAAAGATAACAGCTATCGAGAGCGGAAACTCAGACACTTCGAAGCATATAGTTGAGGACACTGGTAAAAGATTGAAGGATTTTGCGCAAAGTTTGAAAATACCTTTTTCGTTCGATATAGTTATTGTATCTGATTTGTTACATATAAGAGAAGATCTTTTCAAGATAGATTCGGAAGAAACAGTCGCGGTTTATTCTCAATTTGCGCTTAGAAGCAAGATTCAACAACCAGACAAACTCGAAACAATCATGAGAGTGATTAGAACTATAAATCCTATAGTAATGGTTGTCGCCGAGATTGAAGCTAATCACAATTCCAAATCTTTTGTGAACCGTTTCATTGAAGCACTTTTTTACTTTAGTGCATACTTTGATTGTTTTGAGAATTGTATGAAAGGTGATGAGAAGAACAGATTTATTCTAGAGTCAATGTATTTTAGTCATGGTATTAGGAATATTGTGGCTGAAGAAGGAGCTGAAAGAAAGACTAGGGATGTAAAGATTGATGTTTGGAGAGCATTTTTCACAAGATTTGGAATGGTGGAAACAGAATTGAGTATGAAGTCTTTGTATCAAGCTGAATTGGTGGCTAAAAGATTTCCTTGTGGATGTTCTTGCACATTTGATATGAATGGTCATTGTCTTCTTATTGGATGGAAAGGAACACCAATTAACTCTGTTTCTGTTTGGAAATTCATTTGA
Protein sequence

>MS.gene55999.t1

MENLCNFDEFSFNIVEDKLSSSNDTFWETKGHNEMKNVQFSVAEDLGDYNGIESLCSNFGFFQDDPSQEEEFLLSSDKKKYHHQPYQDYETFDNLHFDTVQFDEQCPTKILPLCDTKKDKPFYQTPFAPIDILKNYGKGFKRLLPDDEGKILHPVNDFGLVTNNENERKLLSTIEIMKLAGTRFIQSSSSSESASGLILNHPFGFSFSGLSDEEKEDVSLAESLLACAEKVGYQQYERARKLLSQIESLSSKTGNPVKRVVHYFAEALRQRIDKETGRFSVSSNNMQKMESLFDPEEVSKDLNPAMIALYEDLPFSQVSIFTCVQALLENVSDAKKIHVIDLEIRKGCQWTILMQALQSRNECPLELLKITAIESGNSDTSKHIVEDTGKRLKDFAQSLKIPFSFDIVIVSDLLHIREDLFKIDSEETVAVYSQFALRSKIQQPDKLETIMRVIRTINPIVMVVAEIEANHNSKSFVNRFIEALFYFSAYFDCFENCMKGDEKNRFILESMYFSHGIRNIVAEEGAERKTRDVKIDVWRAFFTRFGMVETELSMKSLYQAELVAKRFPCGCSCTFDMNGHCLLIGWKGTPINSVSVWKFI