AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56000.t1 MTR_2g034260 87.542 602 52 6 1 595 1 586 0.0 1047
MS.gene56000.t1 MTR_2g034250 83.946 598 82 4 1 595 1 587 0.0 1009
MS.gene56000.t1 MTR_2g034280 77.114 603 104 7 1 595 1 577 0.0 915
MS.gene56000.t1 MTR_7g109580 44.400 500 243 8 102 595 86 556 5.83e-136 407
MS.gene56000.t1 MTR_1g086970 44.351 478 238 9 124 595 25 480 1.37e-126 381
MS.gene56000.t1 MTR_3g065980 28.465 404 254 6 205 594 159 541 7.00e-53 189
MS.gene56000.t1 MTR_7g027190 30.296 406 249 10 204 593 286 673 8.56e-48 177
MS.gene56000.t1 MTR_8g442410 29.337 392 254 9 211 593 148 525 4.67e-43 162
MS.gene56000.t1 MTR_4g104020 29.156 391 257 10 211 593 142 520 7.34e-43 161
MS.gene56000.t1 MTR_4g064150 28.861 395 258 8 208 592 351 732 2.01e-42 163
MS.gene56000.t1 MTR_4g076140 26.955 486 267 11 179 593 1 469 3.03e-40 153
MS.gene56000.t1 MTR_4g064200 29.231 390 247 11 213 592 279 649 3.24e-40 155
MS.gene56000.t1 MTR_7g074650 30.688 378 229 10 222 593 442 792 2.59e-39 154
MS.gene56000.t1 MTR_2g097463 27.708 397 243 8 213 592 285 654 2.93e-38 150
MS.gene56000.t1 MTR_7g062120 28.316 392 260 8 209 593 363 740 4.39e-38 150
MS.gene56000.t1 MTR_2g097473 29.049 389 248 8 213 592 284 653 9.45e-38 149
MS.gene56000.t1 MTR_4g064160 26.582 395 253 7 213 592 311 683 7.99e-37 146
MS.gene56000.t1 MTR_4g102790 27.979 386 257 10 215 592 289 661 1.51e-36 145
MS.gene56000.t1 MTR_4g064120 26.166 386 264 7 207 583 243 616 2.71e-36 144
MS.gene56000.t1 MTR_2g097467 27.907 387 255 7 213 592 284 653 3.73e-36 144
MS.gene56000.t1 MTR_1g069725 27.273 407 266 10 188 592 84 462 2.34e-35 139
MS.gene56000.t1 MTR_4g064180 26.166 386 264 7 207 583 243 616 6.79e-35 140
MS.gene56000.t1 MTR_4g077760 26.042 384 261 8 215 593 190 555 3.39e-34 137
MS.gene56000.t1 MTR_5g094450 25.964 389 264 7 215 593 158 532 3.62e-34 137
MS.gene56000.t1 MTR_2g097410 26.250 400 258 9 209 592 362 740 5.69e-34 138
MS.gene56000.t1 MTR_4g133660 24.870 386 271 7 213 592 170 542 1.54e-33 135
MS.gene56000.t1 MTR_2g026250 25.581 387 269 8 213 593 223 596 2.44e-33 135
MS.gene56000.t1 MTR_4g076020 28.191 376 232 9 222 593 88 429 8.60e-33 131
MS.gene56000.t1 MTR_2g097390 23.611 432 302 9 170 592 228 640 2.65e-32 132
MS.gene56000.t1 MTR_3g022830 27.273 429 242 8 219 594 26 437 3.80e-32 129
MS.gene56000.t1 MTR_2g097350 24.485 388 274 6 210 592 266 639 6.14e-32 131
MS.gene56000.t1 MTR_3g072710 27.228 404 261 13 208 592 110 499 7.19e-32 129
MS.gene56000.t1 MTR_5g097480 26.036 338 228 7 219 548 178 501 2.39e-31 128
MS.gene56000.t1 MTR_2g097310 23.196 388 279 6 210 592 264 637 5.95e-31 128
MS.gene56000.t1 MTR_2g082090 24.760 521 338 15 109 592 75 578 6.63e-31 127
MS.gene56000.t1 MTR_3g056110 25.258 388 264 8 215 593 172 542 6.68e-31 127
MS.gene56000.t1 MTR_1g029420 25.707 389 253 9 219 593 226 592 2.90e-29 122
MS.gene56000.t1 MTR_3g089055 27.456 397 236 12 219 593 199 565 3.28e-29 122
MS.gene56000.t1 MTR_3g089055 27.456 397 236 12 219 593 204 570 3.36e-29 122
MS.gene56000.t1 MTR_5g058860 26.392 413 265 12 203 592 100 496 1.17e-28 120
MS.gene56000.t1 MTR_1g096030 25.000 420 265 12 203 595 65 461 1.48e-27 116
MS.gene56000.t1 MTR_2g097380 23.901 364 229 9 234 592 240 560 7.31e-27 115
MS.gene56000.t1 MTR_4g097080 24.444 405 285 9 194 593 115 503 1.18e-25 111
MS.gene56000.t1 MTR_8g093070 27.431 401 247 15 205 592 126 495 4.17e-25 109
MS.gene56000.t1 MTR_7g057230 25.964 389 250 11 217 592 293 656 2.09e-21 99.0
MS.gene56000.t1 MTR_5g015490 24.093 386 272 8 219 593 115 490 4.13e-21 97.4
MS.gene56000.t1 MTR_5g009080 27.755 245 161 6 197 441 36 264 6.50e-21 96.7
MS.gene56000.t1 MTR_5g009080 32.237 152 102 1 442 593 328 478 1.52e-20 95.5
MS.gene56000.t1 MTR_2g099110 24.567 289 203 6 219 504 75 351 1.17e-19 92.4
MS.gene56000.t1 MTR_4g026485 25.455 385 257 11 214 593 265 624 1.77e-19 92.8
MS.gene56000.t1 MTR_6g047750 29.856 278 161 10 334 593 401 662 1.18e-18 90.5
MS.gene56000.t1 MTR_0092s0100 23.454 388 262 10 214 593 371 731 5.59e-17 85.1
MS.gene56000.t1 MTR_0092s0100 23.454 388 262 10 214 593 368 728 6.03e-17 85.1
MS.gene56000.t1 MTR_2g089100 20.710 338 226 9 219 526 53 378 4.58e-14 75.1
MS.gene56000.t1 MTR_8g077940 25.424 354 232 13 216 560 180 510 6.67e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56000.t1 AT3G03450 31.807 393 249 7 205 594 170 546 7.61e-60 209
MS.gene56000.t1 AT5G17490 30.334 389 246 8 209 594 151 517 2.67e-54 193
MS.gene56000.t1 AT2G01570 29.949 394 250 7 205 594 211 582 3.94e-54 194
MS.gene56000.t1 AT1G14920 29.771 393 252 7 205 594 159 530 1.42e-51 186
MS.gene56000.t1 AT1G66350 29.049 389 250 5 207 594 144 507 2.08e-51 185
MS.gene56000.t1 AT5G41920 31.139 395 242 11 205 593 30 400 2.53e-46 168
MS.gene56000.t1 AT5G59450 30.591 389 250 9 213 593 222 598 3.51e-43 164
MS.gene56000.t1 AT3G46600 29.921 381 247 8 219 593 5 371 3.67e-42 156
MS.gene56000.t1 AT3G46600 29.563 389 254 8 211 593 205 579 7.55e-42 159
MS.gene56000.t1 AT1G07530 28.934 394 260 6 206 592 384 764 9.51e-42 161
MS.gene56000.t1 AT3G46600 29.563 389 254 8 211 593 173 547 2.29e-41 157
MS.gene56000.t1 AT3G54220 30.728 371 239 8 222 592 297 649 2.04e-40 156
MS.gene56000.t1 AT1G55580 28.540 452 279 10 177 593 3 445 2.49e-39 150
MS.gene56000.t1 AT1G50420 26.124 467 260 13 192 593 33 479 1.51e-38 148
MS.gene56000.t1 AT2G29060 28.462 390 261 7 210 592 276 654 1.03e-37 148
MS.gene56000.t1 AT2G29060 28.462 390 261 7 210 592 313 691 1.39e-37 148
MS.gene56000.t1 AT2G29065 25.131 382 271 6 219 592 253 627 1.51e-37 147
MS.gene56000.t1 AT2G37650 29.442 394 251 10 209 593 326 701 3.49e-36 144
MS.gene56000.t1 AT2G37650 29.442 394 251 10 209 593 338 713 3.62e-36 144
MS.gene56000.t1 AT4G17230 25.389 386 266 7 215 593 155 525 1.73e-35 140
MS.gene56000.t1 AT4G17230 25.389 386 266 7 215 593 155 525 1.73e-35 140
MS.gene56000.t1 AT1G07520 24.685 397 283 7 204 592 140 528 6.41e-35 139
MS.gene56000.t1 AT1G07520 24.685 397 283 7 204 592 140 528 6.41e-35 139
MS.gene56000.t1 AT1G07520 24.685 397 283 7 204 592 304 692 1.40e-34 139
MS.gene56000.t1 AT1G07520 24.685 397 283 7 204 592 305 693 1.43e-34 139
MS.gene56000.t1 AT1G63100 25.313 399 268 8 210 592 269 653 1.95e-34 139
MS.gene56000.t1 AT5G66770 26.700 397 266 10 206 593 204 584 2.14e-34 138
MS.gene56000.t1 AT1G63100 25.313 399 268 8 210 592 244 628 3.06e-34 138
MS.gene56000.t1 AT3G50650 27.198 364 241 8 238 593 195 542 2.63e-32 131
MS.gene56000.t1 AT2G04890 25.515 388 264 8 210 593 47 413 2.87e-31 126
MS.gene56000.t1 AT5G48150 25.223 337 228 7 215 543 119 439 6.97e-31 126
MS.gene56000.t1 AT5G48150 25.223 337 228 7 215 543 119 439 6.97e-31 126
MS.gene56000.t1 AT5G48150 25.223 337 228 7 215 543 119 439 6.97e-31 126
MS.gene56000.t1 AT5G48150 25.223 337 228 7 215 543 119 439 6.97e-31 126
MS.gene56000.t1 AT1G50600 24.474 380 269 6 219 593 160 526 5.98e-29 121
MS.gene56000.t1 AT1G50600 24.474 380 269 6 219 593 231 597 1.47e-28 120
MS.gene56000.t1 AT1G50600 24.474 380 269 6 219 593 235 601 1.76e-28 120
MS.gene56000.t1 AT4G08250 25.610 410 268 13 199 592 88 476 4.24e-25 109
MS.gene56000.t1 AT1G21450 24.852 338 236 7 219 550 226 551 6.64e-22 100
MS.gene56000.t1 AT2G45160 24.051 395 261 11 215 593 268 639 4.75e-20 94.7
MS.gene56000.t1 AT4G37650 22.542 417 293 11 193 593 127 529 5.26e-20 94.4
MS.gene56000.t1 AT3G49950 24.685 397 256 13 219 592 31 407 1.82e-17 85.5
MS.gene56000.t1 AT3G60630 25.246 305 206 9 300 593 329 622 3.34e-17 85.9
MS.gene56000.t1 AT4G00150 25.063 399 234 14 213 593 203 554 6.42e-17 84.7
MS.gene56000.t1 AT4G36710 22.749 422 285 14 187 594 92 486 1.24e-15 80.1
MS.gene56000.t1 AT3G13840 26.027 292 191 9 207 488 137 413 3.75e-13 72.4

Find 74 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATCCAGTTAATGATTT+TGG 0.114608 2.3:+56442970 MS.gene56000:CDS
AACCATTACTATAGGGTTTA+TGG 0.150240 2.3:-56443880 None:intergenic
ATGGAAAACTTGTGCAATTT+TGG 0.214814 2.3:+56442529 MS.gene56000:CDS
TAATGAACCACGCGCTTAAC+TGG 0.226146 2.3:-56443279 None:intergenic
GAGTCTCTTTGCTCTAATTT+TGG 0.258364 2.3:+56442685 MS.gene56000:CDS
TTTCATTTCACCAAGTTTCT+TGG 0.264601 2.3:-56442614 None:intergenic
CTTGATATGATCCTTGTTCT+TGG 0.265549 2.3:-56442759 None:intergenic
CAAACAGAAACAGAGTTAAT+TGG 0.268686 2.3:-56444281 None:intergenic
GTTCTTGGTGATGATACTTT+AGG 0.270808 2.3:-56442744 None:intergenic
TTGATTCCTAATCACCCTTT+TGG 0.281331 2.3:+56443102 MS.gene56000:CDS
CAACTGGTGCTAAAGGAATT+TGG 0.319198 2.3:-56442888 None:intergenic
CAATTAACTCTGTTTCTGTT+TGG 0.337936 2.3:+56444282 MS.gene56000:CDS
TCGATTGAAGTGCTTGCATT+AGG 0.355406 2.3:-56443569 None:intergenic
AAGGAATTTGGTAGAATTGT+TGG 0.356422 2.3:-56442876 None:intergenic
CCGTGACAACCATTACTATA+GGG 0.362305 2.3:-56443887 None:intergenic
ATCAAACCAAAATCATTAAC+TGG 0.365703 2.3:-56442976 None:intergenic
ACCTCTTGAGGATCAAATAA+AGG 0.376827 2.3:-56443384 None:intergenic
AATGGTCATTGTCTTCTTGT+TGG 0.397166 2.3:+56444245 MS.gene56000:CDS
GTTGATATATTGAAGAACTA+TGG 0.409842 2.3:+56442907 MS.gene56000:CDS
AATATATCAACTGGTGCTAA+AGG 0.430261 2.3:-56442895 None:intergenic
GATTCTTTGTTGAAGAGCTT+CGG 0.433882 2.3:-56443307 None:intergenic
GTCTTTGTATCAAGCTGAAT+TGG 0.435480 2.3:+56444178 MS.gene56000:CDS
TCTTCGTCGCAATCTGCATC+AGG 0.438613 2.3:+56443078 MS.gene56000:CDS
GACAAACAATATGCAAAAGA+TGG 0.445280 2.3:+56443359 MS.gene56000:CDS
TAGTTCTTCAATATATCAAC+TGG 0.445940 2.3:-56442904 None:intergenic
CTCTCATGATTGTTTCAAGT+TGG 0.456214 2.3:-56443848 None:intergenic
CAAAGAATCGACAAAGAAAC+GGG 0.460522 2.3:+56443321 MS.gene56000:CDS
AGGAAATCATCTTCTTCTGA+TGG 0.462485 2.3:-56442724 None:intergenic
GTTATCTTTAGAAGCTCAAC+GGG 0.463236 2.3:-56443603 None:intergenic
AGGAATATTGTGGCTGAAGA+AGG 0.463268 2.3:+56444065 MS.gene56000:CDS
CAAAATCATTAACTGGATGA+AGG 0.470878 2.3:-56442969 None:intergenic
GAAGATATCATGAAGATAGC+TGG 0.473521 2.3:+56443033 MS.gene56000:CDS
TCCGTGACAACCATTACTAT+AGG 0.473792 2.3:-56443888 None:intergenic
ATTGATCTCGAAATCCGAAA+AGG 0.475010 2.3:+56443531 MS.gene56000:CDS
ACAAAGAATCGACAAAGAAA+CGG 0.477156 2.3:+56443320 MS.gene56000:CDS
TGTCTTCTTGTTGGATGGAA+GGG 0.477569 2.3:+56444254 MS.gene56000:CDS
ATTCGATACAATTATTGTAT+CGG 0.478748 2.3:+56443725 MS.gene56000:CDS
TTAGCTTGTGCTGAGAAAGT+TGG 0.481539 2.3:+56443186 MS.gene56000:CDS
TCTTGCACATTTGATATGAA+TGG 0.485082 2.3:+56444227 MS.gene56000:CDS
AAGATAACGGCTATTGTGAC+TGG 0.492320 2.3:+56443618 MS.gene56000:CDS
TTGTCTTCTTGTTGGATGGA+AGG 0.499303 2.3:+56444253 MS.gene56000:CDS
AGATCCTTGGTAACCTCTTG+AGG 0.502534 2.3:-56443396 None:intergenic
CCCTATAGTAATGGTTGTCA+CGG 0.506352 2.3:+56443887 MS.gene56000:CDS
GTCATTGTCTTCTTGTTGGA+TGG 0.509549 2.3:+56444249 MS.gene56000:CDS
GAGTCTTTATCTTCGAAGAC+AGG 0.510353 2.3:+56443252 MS.gene56000:CDS
CGTTGAGCTTCTAAAGATAA+CGG 0.513584 2.3:+56443605 MS.gene56000:CDS
TTGATCTCGAAATCCGAAAA+GGG 0.522982 2.3:+56443532 MS.gene56000:CDS
AAGGGCTGGATTTAGATCCT+TGG 0.529849 2.3:-56443409 None:intergenic
TGACACTGGTAAAAGATTGA+AGG 0.529885 2.3:+56443671 MS.gene56000:CDS
AAAATCATTAACTGGATGAA+GGG 0.532257 2.3:-56442968 None:intergenic
AACCATAAACCCTATAGTAA+TGG 0.546098 2.3:+56443878 MS.gene56000:CDS
TTTGTATCAAGCTGAATTGG+TGG 0.548313 2.3:+56444181 MS.gene56000:CDS
GTTGAGTTTCAATATAGTTG+AGG 0.552737 2.3:+56442555 MS.gene56000:CDS
ACAAACAATATGCAAAAGAT+GGG 0.554209 2.3:+56443360 MS.gene56000:CDS
AAGAGGTTACTACCTGATGA+AGG 0.555954 2.3:+56442940 MS.gene56000:CDS
GAAGATCTAGGAGACTGTAA+TGG 0.557911 2.3:+56442658 MS.gene56000:CDS
ACCTTTATTTGATCCTCAAG+AGG 0.572203 2.3:+56443383 MS.gene56000:CDS
AATGAACCACGCGCTTAACT+GGG 0.580982 2.3:-56443278 None:intergenic
AGACTCTGAGGAAACTGTTG+TGG 0.581099 2.3:+56443782 MS.gene56000:CDS
CGTTATCTTTAGAAGCTCAA+CGG 0.582286 2.3:-56443604 None:intergenic
TCATGGTATTAGGAATATTG+TGG 0.583709 2.3:+56444055 MS.gene56000:CDS
AATGAACCATGTCAAAGTGT+AGG 0.587676 2.3:-56442801 None:intergenic
AAGTATCATCACCAAGAACA+AGG 0.600969 2.3:+56442748 MS.gene56000:CDS
AAATCCGAAAAGGGTTACAA+TGG 0.612089 2.3:+56443541 MS.gene56000:CDS
TGATAACCTACACTTTGACA+TGG 0.617264 2.3:+56442795 MS.gene56000:CDS
ACTATGGCAAATGCTTCAAG+AGG 0.626795 2.3:+56442923 MS.gene56000:CDS
TCATGAAGATAGCTGGAACA+AGG 0.635820 2.3:+56443040 MS.gene56000:CDS
ATAATTGTATCGAATACGAA+AGG 0.635920 2.3:-56443717 None:intergenic
TGATCCTCAAGAGGTTACCA+AGG 0.653643 2.3:+56443392 MS.gene56000:CDS
GAAATGTGAAGATTGATGTG+TGG 0.658264 2.3:+56444105 MS.gene56000:CDS
AAGCATATAGTTGATGACAC+TGG 0.660963 2.3:+56443657 MS.gene56000:CDS
GTGGCTAAAAGATTTCCTTG+TGG 0.676872 2.3:+56444200 MS.gene56000:CDS
AGGTAACCCAGTTAAGCGCG+TGG 0.690106 2.3:+56443272 MS.gene56000:CDS
AATGTGCAAGAACATCCACA+AGG 0.743242 2.3:-56444215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTGAAATTTTACAAAA+TGG - chr2.3:56443456-56443475 None:intergenic 15.0%
!! ATTCGATACAATTATTGTAT+CGG + chr2.3:56443725-56443744 MS.gene56000:CDS 20.0%
!!! TTCATCCAATGATATTTTTT+GGG + chr2.3:56442588-56442607 MS.gene56000:CDS 20.0%
! AAAATCATTAACTGGATGAA+GGG - chr2.3:56442971-56442990 None:intergenic 25.0%
! ACAAACAATATGCAAAAGAT+GGG + chr2.3:56443360-56443379 MS.gene56000:CDS 25.0%
! ATAATTGTATCGAATACGAA+AGG - chr2.3:56443720-56443739 None:intergenic 25.0%
! ATCAAACCAAAATCATTAAC+TGG - chr2.3:56442979-56442998 None:intergenic 25.0%
! GTTGATATATTGAAGAACTA+TGG + chr2.3:56442907-56442926 MS.gene56000:CDS 25.0%
! TAGTTCTTCAATATATCAAC+TGG - chr2.3:56442907-56442926 None:intergenic 25.0%
!! ATTTTTCACAAGATTTGGAA+TGG + chr2.3:56444133-56444152 MS.gene56000:CDS 25.0%
!!! GTTCATCCAATGATATTTTT+TGG + chr2.3:56442587-56442606 MS.gene56000:CDS 25.0%
!!! TGTATTTTAGTCATGGTATT+AGG + chr2.3:56444045-56444064 MS.gene56000:CDS 25.0%
AACCATAAACCCTATAGTAA+TGG + chr2.3:56443878-56443897 MS.gene56000:CDS 30.0%
AACCATTACTATAGGGTTTA+TGG - chr2.3:56443883-56443902 None:intergenic 30.0%
AAGGAATTTGGTAGAATTGT+TGG - chr2.3:56442879-56442898 None:intergenic 30.0%
ACAAAGAATCGACAAAGAAA+CGG + chr2.3:56443320-56443339 MS.gene56000:CDS 30.0%
CAAAATCATTAACTGGATGA+AGG - chr2.3:56442972-56442991 None:intergenic 30.0%
CAAACAGAAACAGAGTTAAT+TGG - chr2.3:56444284-56444303 None:intergenic 30.0%
CAGAGAAACAAAAACCAAAA+GGG - chr2.3:56443119-56443138 None:intergenic 30.0%
GACAAACAATATGCAAAAGA+TGG + chr2.3:56443359-56443378 MS.gene56000:CDS 30.0%
GGTTTCCCAAAAAATATCAT+TGG - chr2.3:56442596-56442615 None:intergenic 30.0%
GTTGAGTTTCAATATAGTTG+AGG + chr2.3:56442555-56442574 MS.gene56000:CDS 30.0%
TCATGGTATTAGGAATATTG+TGG + chr2.3:56444055-56444074 MS.gene56000:CDS 30.0%
TCTTGCACATTTGATATGAA+TGG + chr2.3:56444227-56444246 MS.gene56000:CDS 30.0%
TTTCATTTCACCAAGTTTCT+TGG - chr2.3:56442617-56442636 None:intergenic 30.0%
! AATATATCAACTGGTGCTAA+AGG - chr2.3:56442898-56442917 None:intergenic 30.0%
! ATGGAAAACTTGTGCAATTT+TGG + chr2.3:56442529-56442548 MS.gene56000:CDS 30.0%
! CTTCATCCAGTTAATGATTT+TGG + chr2.3:56442970-56442989 MS.gene56000:CDS 30.0%
! TTTTCTGTAGAAGAAGATCT+AGG + chr2.3:56442646-56442665 MS.gene56000:CDS 30.0%
!! AAAAAAGTGCTTCGATGAAA+CGG - chr2.3:56443950-56443969 None:intergenic 30.0%
!! AGAGCATTTTTCACAAGATT+TGG + chr2.3:56444128-56444147 MS.gene56000:CDS 30.0%
!! CAATTAACTCTGTTTCTGTT+TGG + chr2.3:56444282-56444301 MS.gene56000:CDS 30.0%
!! TGCATTTTTCGATAGTTTTG+AGG + chr2.3:56443977-56443996 MS.gene56000:CDS 30.0%
!!! AGTTTTGAGGATTGTATGAA+AGG + chr2.3:56443990-56444009 MS.gene56000:CDS 30.0%
!!! GAGTCAATGTATTTTAGTCA+TGG + chr2.3:56444038-56444057 MS.gene56000:CDS 30.0%
AAATCCGAAAAGGGTTACAA+TGG + chr2.3:56443541-56443560 MS.gene56000:CDS 35.0%
AAGTATCATCACCAAGAACA+AGG + chr2.3:56442748-56442767 MS.gene56000:CDS 35.0%
AATGAACCATGTCAAAGTGT+AGG - chr2.3:56442804-56442823 None:intergenic 35.0%
AATGGTCATTGTCTTCTTGT+TGG + chr2.3:56444245-56444264 MS.gene56000:CDS 35.0%
ACCTCTTGAGGATCAAATAA+AGG - chr2.3:56443387-56443406 None:intergenic 35.0%
AGGAAATCATCTTCTTCTGA+TGG - chr2.3:56442727-56442746 None:intergenic 35.0%
ATCTTCAAAAAACGCGACAA+GGG - chr2.3:56443430-56443449 None:intergenic 35.0%
ATTGATCTCGAAATCCGAAA+AGG + chr2.3:56443531-56443550 MS.gene56000:CDS 35.0%
CAAAAACCAAAAGGGTGATT+AGG - chr2.3:56443111-56443130 None:intergenic 35.0%
CAAAGAATCGACAAAGAAAC+GGG + chr2.3:56443321-56443340 MS.gene56000:CDS 35.0%
CCAGAGAAACAAAAACCAAA+AGG - chr2.3:56443120-56443139 None:intergenic 35.0%
CTTGATATGATCCTTGTTCT+TGG - chr2.3:56442762-56442781 None:intergenic 35.0%
GAAATGTGAAGATTGATGTG+TGG + chr2.3:56444105-56444124 MS.gene56000:CDS 35.0%
GAAGATATCATGAAGATAGC+TGG + chr2.3:56443033-56443052 MS.gene56000:CDS 35.0%
GATTCTTTGTTGAAGAGCTT+CGG - chr2.3:56443310-56443329 None:intergenic 35.0%
GTCTTTGTATCAAGCTGAAT+TGG + chr2.3:56444178-56444197 MS.gene56000:CDS 35.0%
TCCACTTTGTGACACAAAAA+AGG + chr2.3:56442852-56442871 MS.gene56000:CDS 35.0%
TGACACTGGTAAAAGATTGA+AGG + chr2.3:56443671-56443690 MS.gene56000:CDS 35.0%
TGATAACCTACACTTTGACA+TGG + chr2.3:56442795-56442814 MS.gene56000:CDS 35.0%
TTGATCTCGAAATCCGAAAA+GGG + chr2.3:56443532-56443551 MS.gene56000:CDS 35.0%
TTTGTATCAAGCTGAATTGG+TGG + chr2.3:56444181-56444200 MS.gene56000:CDS 35.0%
! ACCTTTATTTGATCCTCAAG+AGG + chr2.3:56443383-56443402 MS.gene56000:CDS 35.0%
! CGTTATCTTTAGAAGCTCAA+CGG - chr2.3:56443607-56443626 None:intergenic 35.0%
! CGTTGAGCTTCTAAAGATAA+CGG + chr2.3:56443605-56443624 MS.gene56000:CDS 35.0%
! CTCTCATGATTGTTTCAAGT+TGG - chr2.3:56443851-56443870 None:intergenic 35.0%
! GAGTCTCTTTGCTCTAATTT+TGG + chr2.3:56442685-56442704 MS.gene56000:CDS 35.0%
! GTTATCTTTAGAAGCTCAAC+GGG - chr2.3:56443606-56443625 None:intergenic 35.0%
! TTGATTCCTAATCACCCTTT+TGG + chr2.3:56443102-56443121 MS.gene56000:CDS 35.0%
! TTGTCCATTGTAACCCTTTT+CGG - chr2.3:56443548-56443567 None:intergenic 35.0%
! TTTTTGTGTCACAAAGTGGA+GGG - chr2.3:56442852-56442871 None:intergenic 35.0%
!! AAGCATATAGTTGATGACAC+TGG + chr2.3:56443657-56443676 MS.gene56000:CDS 35.0%
!! GTTCTTGGTGATGATACTTT+AGG - chr2.3:56442747-56442766 None:intergenic 35.0%
!! TCTTTTCAAGATAGACTCTG+AGG + chr2.3:56443770-56443789 MS.gene56000:CDS 35.0%
!! TTTTGGGAAACCAAGAAACT+TGG + chr2.3:56442604-56442623 MS.gene56000:CDS 35.0%
!!! CCTTTTGGTTTTTGTTTCTC+TGG + chr2.3:56443117-56443136 MS.gene56000:CDS 35.0%
!!! TCCTTTTTTGTGTCACAAAG+TGG - chr2.3:56442856-56442875 None:intergenic 35.0%
!!! TTTTTTGTGTCACAAAGTGG+AGG - chr2.3:56442853-56442872 None:intergenic 35.0%
AAGAGGTTACTACCTGATGA+AGG + chr2.3:56442940-56442959 MS.gene56000:CDS 40.0%
AATGTGCAAGAACATCCACA+AGG - chr2.3:56444218-56444237 None:intergenic 40.0%
ACTATGGCAAATGCTTCAAG+AGG + chr2.3:56442923-56442942 MS.gene56000:CDS 40.0%
AGGAATATTGTGGCTGAAGA+AGG + chr2.3:56444065-56444084 MS.gene56000:CDS 40.0%
CCCTATAGTAATGGTTGTCA+CGG + chr2.3:56443887-56443906 MS.gene56000:CDS 40.0%
CCGTGACAACCATTACTATA+GGG - chr2.3:56443890-56443909 None:intergenic 40.0%
GAAGATCTAGGAGACTGTAA+TGG + chr2.3:56442658-56442677 MS.gene56000:CDS 40.0%
GAGTCTTTATCTTCGAAGAC+AGG + chr2.3:56443252-56443271 MS.gene56000:CDS 40.0%
GATCTTCAAAAAACGCGACA+AGG - chr2.3:56443431-56443450 None:intergenic 40.0%
GTCATTGTCTTCTTGTTGGA+TGG + chr2.3:56444249-56444268 MS.gene56000:CDS 40.0%
GTGGCTAAAAGATTTCCTTG+TGG + chr2.3:56444200-56444219 MS.gene56000:CDS 40.0%
TCATGAAGATAGCTGGAACA+AGG + chr2.3:56443040-56443059 MS.gene56000:CDS 40.0%
TCCGTGACAACCATTACTAT+AGG - chr2.3:56443891-56443910 None:intergenic 40.0%
TGTCTTCTTGTTGGATGGAA+GGG + chr2.3:56444254-56444273 MS.gene56000:CDS 40.0%
TTGTCTTCTTGTTGGATGGA+AGG + chr2.3:56444253-56444272 MS.gene56000:CDS 40.0%
! AAGATAACGGCTATTGTGAC+TGG + chr2.3:56443618-56443637 MS.gene56000:CDS 40.0%
! CAACTGGTGCTAAAGGAATT+TGG - chr2.3:56442891-56442910 None:intergenic 40.0%
! TCGATTGAAGTGCTTGCATT+AGG - chr2.3:56443572-56443591 None:intergenic 40.0%
! TGAAGGGTTTTTCCTTCATC+AGG - chr2.3:56442955-56442974 None:intergenic 40.0%
!! TTAGCTTGTGCTGAGAAAGT+TGG + chr2.3:56443186-56443205 MS.gene56000:CDS 40.0%
AAGGGCTGGATTTAGATCCT+TGG - chr2.3:56443412-56443431 None:intergenic 45.0%
AATGAACCACGCGCTTAACT+GGG - chr2.3:56443281-56443300 None:intergenic 45.0%
TAATGAACCACGCGCTTAAC+TGG - chr2.3:56443282-56443301 None:intergenic 45.0%
TGATCCTCAAGAGGTTACCA+AGG + chr2.3:56443392-56443411 MS.gene56000:CDS 45.0%
! AGACTCTGAGGAAACTGTTG+TGG + chr2.3:56443782-56443801 MS.gene56000:CDS 45.0%
! AGATCCTTGGTAACCTCTTG+AGG - chr2.3:56443399-56443418 None:intergenic 45.0%
! CAAAGTGGAGGGTCTTTTGT+TGG - chr2.3:56442841-56442860 None:intergenic 45.0%
TCAAAAAACGCGACAAGGGC+TGG - chr2.3:56443426-56443445 None:intergenic 50.0%
TCTTCGTCGCAATCTGCATC+AGG + chr2.3:56443078-56443097 MS.gene56000:CDS 50.0%
AGGTAACCCAGTTAAGCGCG+TGG + chr2.3:56443272-56443291 MS.gene56000:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 56442529 56444316 56442529 ID=MS.gene56000
chr2.3 mRNA 56442529 56444316 56442529 ID=MS.gene56000.t1;Parent=MS.gene56000
chr2.3 exon 56442529 56444316 56442529 ID=MS.gene56000.t1.exon1;Parent=MS.gene56000.t1
chr2.3 CDS 56442529 56444316 56442529 ID=cds.MS.gene56000.t1;Parent=MS.gene56000.t1
Gene Sequence

>MS.gene56000

ATGGAAAACTTGTGCAATTTTGGTGAGTTGAGTTTCAATATAGTTGAGGATAAACTTAGTTCATCCAATGATATTTTTTGGGAAACCAAGAAACTTGGTGAAATGAAAAATGTTCAATTTTCTGTAGAAGAAGATCTAGGAGACTGTAATGGAATTGAGTCTCTTTGCTCTAATTTTGGTCTCTTTCAAGATGTTCCATCAGAAGAAGATGATTTCCTAAAGTATCATCACCAAGAACAAGGATCATATCAAGATTATGAATCTTTTGATAACCTACACTTTGACATGGTTCATTTTGATGAACAATGTCCAACAAAAGACCCTCCACTTTGTGACACAAAAAAGGACCAACAATTCTACCAAATTCCTTTAGCACCAGTTGATATATTGAAGAACTATGGCAAATGCTTCAAGAGGTTACTACCTGATGAAGGAAAAACCCTTCATCCAGTTAATGATTTTGGTTTGATCACAGATAATGAAAATGAGAGTAAGTTGTCAACTGAAGATATCATGAAGATAGCTGGAACAAGGTTCATACAATCATCATCTTCGTCGCAATCTGCATCAGGTTTGATTCCTAATCACCCTTTTGGTTTTTGTTTCTCTGGTTTATCTGATGAAGAGAAAGAAGATGTTTCACTTGTTGAATCACTCTTAGCTTGTGCTGAGAAAGTTGGATATCAACAATATGAACGCGCTAGAAGATTGTTATTACAAATCGAGTCTTTATCTTCGAAGACAGGTAACCCAGTTAAGCGCGTGGTTCATTATTTTGCCGAAGCTCTTCAACAAAGAATCGACAAAGAAACGGGAAGAGTTTCTGTTTCGACAAACAATATGCAAAAGATGGGACCTTTATTTGATCCTCAAGAGGTTACCAAGGATCTAAATCCAGCCCTTGTCGCGTTTTTTGAAGATCTTCCATTTTGTAAAATTTCAATGTTCACATGTGTACAAACTTTAATAGAAAATGTAACTGATGCAAAGAAGATTCATGTTATTGATCTCGAAATCCGAAAAGGGTTACAATGGACAATCCTAATGCAAGCACTTCAATCGAGAAACAAATGTCCCGTTGAGCTTCTAAAGATAACGGCTATTGTGACTGGAAACATAGACACTTCGAAGCATATAGTTGATGACACTGGTAAAAGATTGAAGGACTTTGCGCGATATTTGAACATACCTTTCGTATTCGATACAATTATTGTATCGGATTTATTACATCTTAGAGAAGATCTTTTCAAGATAGACTCTGAGGAAACTGTTGTGGTTTACTCTCAGTTTGCGCTTCGAAGCAAGATTCAACAATCAGACCAACTTGAAACAATCATGAGAGTAGTTAGAACCATAAACCCTATAGTAATGGTTGTCACGGAGATTGAAGCTAATCACAATTCTAAATCTTTTGTGAACCGTTTCATCGAAGCACTTTTTTACTTTAGTGCATTTTTCGATAGTTTTGAGGATTGTATGAAAGGTGATGAGAAAAACAGATTTATTCTAGAGTCAATGTATTTTAGTCATGGTATTAGGAATATTGTGGCTGAAGAAGGAGCTGAAAGAAAGAGTAGAAATGTGAAGATTGATGTGTGGAGAGCATTTTTCACAAGATTTGGAATGGTTGAAACAGAATTGAGTATGAAGTCTTTGTATCAAGCTGAATTGGTGGCTAAAAGATTTCCTTGTGGATGTTCTTGCACATTTGATATGAATGGTCATTGTCTTCTTGTTGGATGGAAGGGAACACCAATTAACTCTGTTTCTGTTTGGAAATTCCTTTGA
Protein sequence

>MS.gene56000.t1

MENLCNFGELSFNIVEDKLSSSNDIFWETKKLGEMKNVQFSVEEDLGDCNGIESLCSNFGLFQDVPSEEDDFLKYHHQEQGSYQDYESFDNLHFDMVHFDEQCPTKDPPLCDTKKDQQFYQIPLAPVDILKNYGKCFKRLLPDEGKTLHPVNDFGLITDNENESKLSTEDIMKIAGTRFIQSSSSSQSASGLIPNHPFGFCFSGLSDEEKEDVSLVESLLACAEKVGYQQYERARRLLLQIESLSSKTGNPVKRVVHYFAEALQQRIDKETGRVSVSTNNMQKMGPLFDPQEVTKDLNPALVAFFEDLPFCKISMFTCVQTLIENVTDAKKIHVIDLEIRKGLQWTILMQALQSRNKCPVELLKITAIVTGNIDTSKHIVDDTGKRLKDFARYLNIPFVFDTIIVSDLLHLREDLFKIDSEETVVVYSQFALRSKIQQSDQLETIMRVVRTINPIVMVVTEIEANHNSKSFVNRFIEALFYFSAFFDSFEDCMKGDEKNRFILESMYFSHGIRNIVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMKSLYQAELVAKRFPCGCSCTFDMNGHCLLVGWKGTPINSVSVWKFL