AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56001

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56001.t1 MTR_2g034280 90.000 600 37 3 1 600 1 577 0.0 1085
MS.gene56001.t1 MTR_2g034260 79.602 603 103 7 1 600 1 586 0.0 959
MS.gene56001.t1 MTR_2g034250 78.618 608 101 10 1 600 1 587 0.0 938
MS.gene56001.t1 MTR_7g109580 44.204 509 263 8 93 600 68 556 2.73e-136 409
MS.gene56001.t1 MTR_1g086970 44.764 487 238 9 123 600 16 480 8.99e-130 389
MS.gene56001.t1 MTR_3g065980 29.750 400 251 7 213 599 159 541 1.14e-56 200
MS.gene56001.t1 MTR_7g027190 30.198 404 249 11 212 598 286 673 7.37e-49 181
MS.gene56001.t1 MTR_4g076140 29.701 468 240 15 198 598 24 469 4.74e-43 161
MS.gene56001.t1 MTR_7g074650 31.183 372 232 9 230 598 442 792 7.71e-43 165
MS.gene56001.t1 MTR_8g442410 31.443 388 248 12 219 598 148 525 8.41e-43 161
MS.gene56001.t1 MTR_4g104020 28.395 405 265 12 208 598 127 520 3.57e-42 159
MS.gene56001.t1 MTR_4g102790 28.010 382 251 11 227 597 293 661 1.18e-37 148
MS.gene56001.t1 MTR_4g064150 28.354 395 257 9 216 597 351 732 4.17e-37 147
MS.gene56001.t1 MTR_4g076020 28.836 378 224 7 230 598 88 429 5.46e-37 143
MS.gene56001.t1 MTR_5g094450 27.154 383 264 9 223 598 158 532 8.20e-37 144
MS.gene56001.t1 MTR_3g022830 27.400 427 241 8 227 599 26 437 1.79e-36 142
MS.gene56001.t1 MTR_1g069725 28.218 404 259 11 198 597 86 462 2.03e-35 139
MS.gene56001.t1 MTR_2g026250 25.455 385 269 8 221 598 223 596 9.51e-35 139
MS.gene56001.t1 MTR_7g062120 27.320 388 266 8 217 598 363 740 1.25e-34 140
MS.gene56001.t1 MTR_4g133660 24.219 384 273 8 221 597 170 542 5.61e-34 136
MS.gene56001.t1 MTR_3g056110 26.042 384 263 8 223 598 172 542 9.15e-34 135
MS.gene56001.t1 MTR_4g064200 26.684 386 259 10 221 597 279 649 1.36e-33 136
MS.gene56001.t1 MTR_4g077760 26.893 383 256 10 223 598 190 555 2.76e-33 134
MS.gene56001.t1 MTR_5g097480 26.471 340 229 7 223 553 174 501 9.09e-33 132
MS.gene56001.t1 MTR_4g064160 25.635 394 255 8 221 597 311 683 1.23e-32 134
MS.gene56001.t1 MTR_4g064120 27.907 387 253 12 215 588 243 616 1.44e-32 133
MS.gene56001.t1 MTR_3g072710 26.972 393 273 10 216 597 110 499 3.21e-32 130
MS.gene56001.t1 MTR_2g097410 26.396 394 262 9 217 597 362 740 9.87e-32 131
MS.gene56001.t1 MTR_2g097463 26.234 385 261 9 221 597 285 654 1.34e-31 130
MS.gene56001.t1 MTR_2g082090 24.539 542 363 16 89 597 50 578 2.15e-31 129
MS.gene56001.t1 MTR_2g097390 24.093 386 275 7 218 597 267 640 2.79e-31 129
MS.gene56001.t1 MTR_2g097350 25.130 386 271 7 218 597 266 639 2.93e-31 129
MS.gene56001.t1 MTR_2g097473 27.390 387 254 9 221 597 284 653 3.34e-31 129
MS.gene56001.t1 MTR_2g097310 24.352 386 274 7 218 597 264 637 4.85e-31 128
MS.gene56001.t1 MTR_3g089055 26.598 391 244 12 227 598 199 565 1.54e-30 126
MS.gene56001.t1 MTR_3g089055 26.598 391 244 12 227 598 204 570 1.61e-30 126
MS.gene56001.t1 MTR_4g064180 27.273 385 258 11 215 588 243 616 2.71e-30 126
MS.gene56001.t1 MTR_1g029420 25.581 387 253 9 227 598 226 592 4.95e-30 125
MS.gene56001.t1 MTR_2g097467 26.166 386 260 9 221 597 284 653 1.17e-29 124
MS.gene56001.t1 MTR_1g096030 26.555 418 258 14 211 600 65 461 6.55e-29 120
MS.gene56001.t1 MTR_4g097080 24.250 400 280 7 206 598 120 503 7.96e-27 114
MS.gene56001.t1 MTR_2g097380 24.862 362 225 10 242 597 240 560 4.34e-26 113
MS.gene56001.t1 MTR_8g093070 27.569 399 246 15 213 597 126 495 2.69e-25 110
MS.gene56001.t1 MTR_5g058860 23.701 481 317 15 149 597 34 496 6.82e-25 108
MS.gene56001.t1 MTR_5g009080 31.518 257 158 7 192 447 25 264 8.41e-25 108
MS.gene56001.t1 MTR_5g009080 31.579 152 102 2 448 598 328 478 1.50e-19 92.4
MS.gene56001.t1 MTR_5g015490 24.548 387 266 10 227 598 115 490 6.11e-24 105
MS.gene56001.t1 MTR_4g026485 25.459 381 259 10 222 598 265 624 6.65e-22 100
MS.gene56001.t1 MTR_2g099110 25.897 390 258 12 227 598 75 451 9.90e-21 95.9
MS.gene56001.t1 MTR_7g057230 24.691 405 271 12 208 597 271 656 4.33e-20 94.7
MS.gene56001.t1 MTR_6g047750 29.242 277 163 11 340 598 401 662 3.05e-17 85.9
MS.gene56001.t1 MTR_0092s0100 23.280 378 272 8 222 598 368 728 1.45e-15 80.9
MS.gene56001.t1 MTR_0092s0100 23.280 378 272 8 222 598 371 731 1.49e-15 80.5
MS.gene56001.t1 MTR_8g020840 19.202 401 290 10 219 599 163 549 4.40e-13 72.4
MS.gene56001.t1 MTR_8g077940 25.215 349 234 11 225 565 181 510 1.69e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56001.t1 AT3G03450 30.380 395 249 8 213 599 170 546 4.08e-57 201
MS.gene56001.t1 AT1G66350 29.974 387 246 8 215 599 144 507 3.40e-54 192
MS.gene56001.t1 AT5G17490 29.974 387 247 9 217 599 151 517 1.89e-52 188
MS.gene56001.t1 AT2G01570 29.923 391 251 8 213 599 211 582 2.01e-52 189
MS.gene56001.t1 AT1G14920 29.487 390 254 7 213 599 159 530 2.00e-51 186
MS.gene56001.t1 AT5G41920 30.769 390 247 10 213 598 30 400 4.59e-46 167
MS.gene56001.t1 AT3G54220 32.162 370 232 8 230 597 297 649 1.01e-43 166
MS.gene56001.t1 AT1G50420 28.008 482 257 16 190 598 15 479 6.87e-42 158
MS.gene56001.t1 AT1G07530 28.141 398 265 8 209 597 379 764 6.05e-38 150
MS.gene56001.t1 AT1G55580 27.952 415 250 10 223 598 41 445 1.52e-37 145
MS.gene56001.t1 AT5G59450 29.639 388 252 11 221 598 222 598 6.46e-37 145
MS.gene56001.t1 AT3G46600 29.921 381 244 10 227 598 5 371 1.22e-36 141
MS.gene56001.t1 AT2G29060 27.763 389 262 7 218 597 276 654 1.97e-36 145
MS.gene56001.t1 AT3G46600 29.306 389 252 10 219 598 205 579 2.45e-36 144
MS.gene56001.t1 AT2G29060 27.763 389 262 7 218 597 313 691 2.75e-36 144
MS.gene56001.t1 AT1G63100 25.500 400 263 10 218 597 269 653 3.34e-36 144
MS.gene56001.t1 AT1G63100 25.500 400 263 10 218 597 244 628 3.82e-36 144
MS.gene56001.t1 AT2G29065 25.781 384 263 9 227 597 253 627 4.22e-36 144
MS.gene56001.t1 AT3G46600 29.306 389 252 10 219 598 173 547 5.02e-36 142
MS.gene56001.t1 AT5G66770 27.595 395 262 10 214 598 204 584 3.20e-35 140
MS.gene56001.t1 AT2G04890 25.729 377 258 7 227 598 54 413 4.44e-35 137
MS.gene56001.t1 AT1G07520 25.441 397 277 9 212 597 140 528 7.21e-34 136
MS.gene56001.t1 AT1G07520 25.441 397 277 9 212 597 140 528 7.21e-34 136
MS.gene56001.t1 AT1G07520 25.441 397 277 9 212 597 304 692 7.90e-34 137
MS.gene56001.t1 AT1G07520 25.441 397 277 9 212 597 305 693 9.02e-34 137
MS.gene56001.t1 AT4G17230 25.521 384 265 9 223 598 155 525 2.05e-33 134
MS.gene56001.t1 AT4G17230 25.521 384 265 9 223 598 155 525 2.05e-33 134
MS.gene56001.t1 AT5G48150 24.219 384 271 9 223 598 119 490 7.54e-33 132
MS.gene56001.t1 AT5G48150 24.219 384 271 9 223 598 119 490 7.54e-33 132
MS.gene56001.t1 AT5G48150 24.219 384 271 9 223 598 119 490 7.54e-33 132
MS.gene56001.t1 AT5G48150 24.219 384 271 9 223 598 119 490 7.54e-33 132
MS.gene56001.t1 AT1G50600 25.654 382 259 9 227 598 160 526 2.26e-30 125
MS.gene56001.t1 AT3G50650 26.331 357 234 9 254 598 203 542 2.34e-30 125
MS.gene56001.t1 AT1G50600 25.654 382 259 9 227 598 231 597 5.45e-30 125
MS.gene56001.t1 AT1G50600 25.654 382 259 9 227 598 235 601 6.46e-30 125
MS.gene56001.t1 AT2G37650 26.357 387 269 6 217 598 326 701 8.76e-30 125
MS.gene56001.t1 AT2G37650 26.357 387 269 6 217 598 338 713 9.56e-30 125
MS.gene56001.t1 AT4G08250 26.521 411 260 12 207 597 88 476 1.25e-29 122
MS.gene56001.t1 AT1G21450 24.745 392 272 9 218 598 214 593 4.17e-23 103
MS.gene56001.t1 AT2G45160 24.862 362 244 10 244 598 299 639 5.22e-20 94.7
MS.gene56001.t1 AT3G60630 26.246 301 201 7 309 598 332 622 2.28e-19 92.4
MS.gene56001.t1 AT4G00150 26.209 393 234 14 221 598 203 554 2.45e-19 92.4
MS.gene56001.t1 AT4G37650 22.670 397 268 12 227 598 147 529 9.38e-19 90.1
MS.gene56001.t1 AT3G49950 24.235 392 261 13 227 597 31 407 1.29e-17 85.9
MS.gene56001.t1 AT5G52510 24.549 277 187 5 339 598 369 640 5.91e-15 78.6
MS.gene56001.t1 AT3G13840 26.950 282 180 11 224 493 145 412 2.85e-12 69.7

Find 77 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCTTCTTTGCATCTTTA+AGG 0.061011 2.3:-56437220 None:intergenic
AATGGTCATTGTCTTCTTAT+TGG 0.198735 2.3:+56437959 MS.gene56001:CDS
TGTACTTTAGTTATGGTATT+AGG 0.213606 2.3:+56437762 MS.gene56001:CDS
GAGTCTCTTTGCTCTAATTT+TGG 0.217371 2.3:+56436384 MS.gene56001:CDS
CTGTTTCTTTGTCGATTCTT+TGG 0.234871 2.3:-56437043 None:intergenic
TTATGGTATTAGGAATATTT+TGG 0.239748 2.3:+56437772 MS.gene56001:CDS
TCGACTGGTGTTAAACTTAA+AGG 0.240571 2.3:-56436612 None:intergenic
TTCACTTGCTGAATCACTTT+TGG 0.248339 2.3:+56436890 MS.gene56001:CDS
CTTTGAAGTGCATGTGTTTC+CGG 0.255948 2.3:-56437354 None:intergenic
TTGATTCTTAATCACCCTTT+TGG 0.256538 2.3:+56436825 MS.gene56001:CDS
CAAACAGAAACAGAGTTAAT+TGG 0.268686 2.3:-56437995 None:intergenic
ATGGAAAACTTGTGGGAATT+TGG 0.283067 2.3:+56436228 MS.gene56001:CDS
TAACGAACCACACGCTTAAC+AGG 0.286581 2.3:-56437002 None:intergenic
AGATCCTTGCTAACCTCTTC+AGG 0.292320 2.3:-56437113 None:intergenic
ATAATTGTATTGAACGAAAA+AGG 0.305796 2.3:-56437434 None:intergenic
AAAGTTTCATAATCTTGATA+TGG 0.312751 2.3:-56436483 None:intergenic
TCTTCCTCAAAATCTATATC+AGG 0.317310 2.3:+56436801 MS.gene56001:CDS
CAATTAACTCTGTTTCTGTT+TGG 0.337936 2.3:+56437996 MS.gene56001:CDS
TTACCAGTGTCTTCAACTAT+AGG 0.344576 2.3:-56437377 None:intergenic
GAATTTGGTGAGTTCAGTTT+TGG 0.366424 2.3:+56436243 MS.gene56001:CDS
ATGTTATTGATCTCGAAATT+CGG 0.376304 2.3:+56437243 MS.gene56001:CDS
TCGATTGAAGCGCTTGCATT+AGG 0.377874 2.3:-56437286 None:intergenic
ACTAAATCAAAATCATTAAC+AGG 0.380198 2.3:-56436699 None:intergenic
AACATTGAAACTTTAACAAA+TGG 0.394609 2.3:-56437170 None:intergenic
GAATCATTGTACTTTAGTTA+TGG 0.412293 2.3:+56437755 MS.gene56001:CDS
TCTTGCACATTTGATATGAA+TGG 0.412387 2.3:+56437941 MS.gene56001:CDS
CAAAGAATCGACAAAGAAAC+AGG 0.418322 2.3:+56437044 MS.gene56001:CDS
GTCTTTGTATCAAGCTGAAT+TGG 0.419059 2.3:+56437892 MS.gene56001:CDS
GTCATTGTCTTCTTATTGGA+TGG 0.423148 2.3:+56437963 MS.gene56001:CDS
AATGAGAGTAAGTTGTCAAC+TGG 0.424534 2.3:+56436735 MS.gene56001:CDS
AACATCTTCTTTCTCTTCAT+CGG 0.443269 2.3:-56436868 None:intergenic
GATTCTTTGGCAAAGTGCTT+CGG 0.447077 2.3:-56437030 None:intergenic
TGAAGACACTGGTAAAAGAT+TGG 0.455988 2.3:+56437385 MS.gene56001:CDS
GAAGATCTAGGAGACTCTAA+TGG 0.460843 2.3:+56436357 MS.gene56001:CDS
TAGAAGCTCGAGTGGACATT+CGG 0.469119 2.3:-56437312 None:intergenic
CAAAATGGAAGAATTCTTGT+AGG 0.470211 2.3:-56436552 None:intergenic
TTTCTCTTCATCGGAGAGAC+CGG 0.476719 2.3:-56436859 None:intergenic
CAAAATCATTAACAGGATGA+TGG 0.479763 2.3:-56436692 None:intergenic
TGTCTTCTTATTGGATGGAA+AGG 0.484516 2.3:+56437968 MS.gene56001:CDS
ATCTGTGATGGAAAACTTGT+GGG 0.486830 2.3:+56436221 None:intergenic
TCGGCTACGACCATTACTAT+AGG 0.488277 2.3:-56437605 None:intergenic
AACTCTTTATCTTCGAAGAC+AGG 0.490618 2.3:+56436975 MS.gene56001:CDS
GGAGATATCATGAAGATAGC+TGG 0.498257 2.3:+56436756 MS.gene56001:CDS
TTTCATAATCTTGATATGGT+TGG 0.499177 2.3:-56436479 None:intergenic
AGAAGCTCTTCTTCTTGTGA+TGG 0.501424 2.3:-56436423 None:intergenic
TTTCATTGTATCAAGTCCCT+TGG 0.502952 2.3:-56436313 None:intergenic
CCGGAGAAAGAAAATCCAAA+AGG 0.504198 2.3:-56436840 None:intergenic
CATAATCTTGATATGGTTGG+TGG 0.505022 2.3:-56436476 None:intergenic
AAATTCGGAAAGGGCTACAT+TGG 0.513173 2.3:+56437258 MS.gene56001:CDS
CTCTCATGACTGTTTCAAGT+TGG 0.524579 2.3:-56437565 None:intergenic
TTGATCTCGAAATTCGGAAA+GGG 0.527853 2.3:+56437249 MS.gene56001:CDS
AACTATAAATCCTATAGTAA+TGG 0.549134 2.3:+56437595 MS.gene56001:CDS
CGGAGAAAGAAAATCCAAAA+GGG 0.549231 2.3:-56436839 None:intergenic
ATCTATATTTGATCCTGAAG+AGG 0.556484 2.3:+56437100 MS.gene56001:CDS
ACTCGAGCTTCTAAAGATAA+CGG 0.561033 2.3:+56437322 MS.gene56001:CDS
AAGATAACGGCTATTGCCAC+CGG 0.561951 2.3:+56437335 MS.gene56001:CDS
AGACACTGGTAAAAGATTGG+AGG 0.562659 2.3:+56437388 MS.gene56001:CDS
TGTTTGGAAGATTGTATGAA+AGG 0.565315 2.3:+56437707 MS.gene56001:CDS
AAGAGGTTATCACCTGATGA+AGG 0.566194 2.3:+56436663 MS.gene56001:CDS
ATTGTGATTAGCTTCAGTCT+CGG 0.571904 2.3:-56437624 None:intergenic
TTAAACTTAAAGGCGATGGT+TGG 0.572392 2.3:-56436602 None:intergenic
GGTGTTAAACTTAAAGGCGA+TGG 0.573604 2.3:-56436606 None:intergenic
AATCTGTGATGGAAAACTTG+TGG 0.585803 2.3:+56436220 None:intergenic
TGATCCTGAAGAGGTTAGCA+AGG 0.599740 2.3:+56437109 MS.gene56001:CDS
TGATAACTTCAACATTAACA+TGG 0.607311 2.3:+56436506 MS.gene56001:CDS
GTTGCTAAAAGATTTCCTTG+TGG 0.611038 2.3:+56437914 MS.gene56001:CDS
GTTATCTTTAGAAGCTCGAG+TGG 0.617427 2.3:-56437320 None:intergenic
ATTGATCTCGAAATTCGGAA+AGG 0.619403 2.3:+56437248 MS.gene56001:CDS
AAATTGAGAGTAAACTGCAA+CGG 0.631573 2.3:-56437513 None:intergenic
TCATGAAGATAGCTGGAACA+AGG 0.635820 2.3:+56436763 MS.gene56001:CDS
AAGCCTATAGTTGAAGACAC+TGG 0.651862 2.3:+56437374 MS.gene56001:CDS
TGAAGTGCATGTGTTTCCGG+TGG 0.657076 2.3:-56437351 None:intergenic
CGAATGTGAAGATTGATGTG+TGG 0.657727 2.3:+56437819 MS.gene56001:CDS
AGGTAACCCTGTTAAGCGTG+TGG 0.660619 2.3:+56436995 MS.gene56001:CDS
AACGAACCACACGCTTAACA+GGG 0.662030 2.3:-56437001 None:intergenic
ATTATGGCAAAGGATTCAAG+AGG 0.672484 2.3:+56436646 MS.gene56001:CDS
AATGTGCAAGAATTTCCACA+AGG 0.746520 2.3:-56437929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTCATAATCTTGATA+TGG - chr2.3:56436486-56436505 None:intergenic 20.0%
!! AACATTGAAACTTTAACAAA+TGG - chr2.3:56437173-56437192 None:intergenic 20.0%
!! AACTATAAATCCTATAGTAA+TGG + chr2.3:56437595-56437614 MS.gene56001:CDS 20.0%
!! ACTAAATCAAAATCATTAAC+AGG - chr2.3:56436702-56436721 None:intergenic 20.0%
!! ATAATTGTATTGAACGAAAA+AGG - chr2.3:56437437-56437456 None:intergenic 20.0%
!! ATATTGAAAAATTATGGCAA+AGG + chr2.3:56436636-56436655 MS.gene56001:CDS 20.0%
!!! TTATGGTATTAGGAATATTT+TGG + chr2.3:56437772-56437791 MS.gene56001:CDS 20.0%
! ATGTTATTGATCTCGAAATT+CGG + chr2.3:56437243-56437262 MS.gene56001:CDS 25.0%
! GAATCATTGTACTTTAGTTA+TGG + chr2.3:56437755-56437774 MS.gene56001:CDS 25.0%
! GTCGAGATATTGAAAAATTA+TGG + chr2.3:56436630-56436649 MS.gene56001:CDS 25.0%
! TGATAACTTCAACATTAACA+TGG + chr2.3:56436506-56436525 MS.gene56001:CDS 25.0%
! TGTACTTTAGTTATGGTATT+AGG + chr2.3:56437762-56437781 MS.gene56001:CDS 25.0%
! TTTCATAATCTTGATATGGT+TGG - chr2.3:56436482-56436501 None:intergenic 25.0%
!! ATTTTTCACAAGATTTGGAA+TGG + chr2.3:56437847-56437866 MS.gene56001:CDS 25.0%
!!! TAATTTTTCAATATCTCGAC+TGG - chr2.3:56436630-56436649 None:intergenic 25.0%
!!! TTCATCCAATGATACTTTTT+GGG + chr2.3:56436287-56436306 MS.gene56001:CDS 25.0%
AAATTGAGAGTAAACTGCAA+CGG - chr2.3:56437516-56437535 None:intergenic 30.0%
AACATCTTCTTTCTCTTCAT+CGG - chr2.3:56436871-56436890 None:intergenic 30.0%
AATGGTCATTGTCTTCTTAT+TGG + chr2.3:56437959-56437978 MS.gene56001:CDS 30.0%
ATCTATATTTGATCCTGAAG+AGG + chr2.3:56437100-56437119 MS.gene56001:CDS 30.0%
CAAAATCATTAACAGGATGA+TGG - chr2.3:56436695-56436714 None:intergenic 30.0%
CAAAATGGAAGAATTCTTGT+AGG - chr2.3:56436555-56436574 None:intergenic 30.0%
CAAACAGAAACAGAGTTAAT+TGG - chr2.3:56437998-56438017 None:intergenic 30.0%
CTCTTCGAAAAATGCAATAA+GGG - chr2.3:56437147-56437166 None:intergenic 30.0%
GAATCTTCTTTGCATCTTTA+AGG - chr2.3:56437223-56437242 None:intergenic 30.0%
TCTTCCTCAAAATCTATATC+AGG + chr2.3:56436801-56436820 MS.gene56001:CDS 30.0%
TCTTGCACATTTGATATGAA+TGG + chr2.3:56437941-56437960 MS.gene56001:CDS 30.0%
TGTTTGGAAGATTGTATGAA+AGG + chr2.3:56437707-56437726 MS.gene56001:CDS 30.0%
! ATGATACTTTTGTTGATCAG+TGG - chr2.3:56436454-56436473 None:intergenic 30.0%
! CAAACCTGATATAGATTTTG+AGG - chr2.3:56436808-56436827 None:intergenic 30.0%
! GTTCATCCAATGATACTTTT+TGG + chr2.3:56436286-56436305 MS.gene56001:CDS 30.0%
! TCCATTTTGTGACACAAAAA+AGG + chr2.3:56436566-56436585 MS.gene56001:CDS 30.0%
! TTGATTCTTAATCACCCTTT+TGG + chr2.3:56436825-56436844 MS.gene56001:CDS 30.0%
! TTTTCTGTAGAAGAAGATCT+AGG + chr2.3:56436345-56436364 MS.gene56001:CDS 30.0%
!! AAAAAAGTGCTTCGATGAAA+CGG - chr2.3:56437667-56437686 None:intergenic 30.0%
!! AGAGCATTTTTCACAAGATT+TGG + chr2.3:56437842-56437861 MS.gene56001:CDS 30.0%
!! CAATTAACTCTGTTTCTGTT+TGG + chr2.3:56437996-56438015 MS.gene56001:CDS 30.0%
!!! ATTAGGAATATTTTGGCTGA+AGG + chr2.3:56437779-56437798 MS.gene56001:CDS 30.0%
!!! TCCTTTTTTGTGTCACAAAA+TGG - chr2.3:56436570-56436589 None:intergenic 30.0%
AACTCTTTATCTTCGAAGAC+AGG + chr2.3:56436975-56436994 MS.gene56001:CDS 35.0%
AATGAGAGTAAGTTGTCAAC+TGG + chr2.3:56436735-56436754 MS.gene56001:CDS 35.0%
AATGTGCAAGAATTTCCACA+AGG - chr2.3:56437932-56437951 None:intergenic 35.0%
ATGGAAAACTTGTGGGAATT+TGG + chr2.3:56436228-56436247 MS.gene56001:CDS 35.0%
ATTATGGCAAAGGATTCAAG+AGG + chr2.3:56436646-56436665 MS.gene56001:CDS 35.0%
ATTGATCTCGAAATTCGGAA+AGG + chr2.3:56437248-56437267 MS.gene56001:CDS 35.0%
CAAAGAATCGACAAAGAAAC+AGG + chr2.3:56437044-56437063 MS.gene56001:CDS 35.0%
CATAATCTTGATATGGTTGG+TGG - chr2.3:56436479-56436498 None:intergenic 35.0%
CGGAGAAAGAAAATCCAAAA+GGG - chr2.3:56436842-56436861 None:intergenic 35.0%
GCTCTTCGAAAAATGCAATA+AGG - chr2.3:56437148-56437167 None:intergenic 35.0%
GTCATTGTCTTCTTATTGGA+TGG + chr2.3:56437963-56437982 MS.gene56001:CDS 35.0%
GTCTTTGTATCAAGCTGAAT+TGG + chr2.3:56437892-56437911 MS.gene56001:CDS 35.0%
GTTGCTAAAAGATTTCCTTG+TGG + chr2.3:56437914-56437933 MS.gene56001:CDS 35.0%
TCGAAAAATGCAATAAGGGT+TGG - chr2.3:56437143-56437162 None:intergenic 35.0%
TGAAGACACTGGTAAAAGAT+TGG + chr2.3:56437385-56437404 MS.gene56001:CDS 35.0%
TGTCTTCTTATTGGATGGAA+AGG + chr2.3:56437968-56437987 MS.gene56001:CDS 35.0%
TTAAACTTAAAGGCGATGGT+TGG - chr2.3:56436605-56436624 None:intergenic 35.0%
TTACCAGTGTCTTCAACTAT+AGG - chr2.3:56437380-56437399 None:intergenic 35.0%
TTGATCTCGAAATTCGGAAA+GGG + chr2.3:56437249-56437268 MS.gene56001:CDS 35.0%
TTTCATTGTATCAAGTCCCT+TGG - chr2.3:56436316-56436335 None:intergenic 35.0%
! ACTCGAGCTTCTAAAGATAA+CGG + chr2.3:56437322-56437341 MS.gene56001:CDS 35.0%
! CCTTTTGGATTTTCTTTCTC+CGG + chr2.3:56436840-56436859 MS.gene56001:CDS 35.0%
! GAGTCTCTTTGCTCTAATTT+TGG + chr2.3:56436384-56436403 MS.gene56001:CDS 35.0%
! TCGACTGGTGTTAAACTTAA+AGG - chr2.3:56436615-56436634 None:intergenic 35.0%
!! ATTGTGATTAGCTTCAGTCT+CGG - chr2.3:56437627-56437646 None:intergenic 35.0%
!! CTGTTTCTTTGTCGATTCTT+TGG - chr2.3:56437046-56437065 None:intergenic 35.0%
!! GAATTTGGTGAGTTCAGTTT+TGG + chr2.3:56436243-56436262 MS.gene56001:CDS 35.0%
!! GGTATCCCAAAAAGTATCAT+TGG - chr2.3:56436295-56436314 None:intergenic 35.0%
!! TAGTGCGCTTTTTGATTGTT+TGG + chr2.3:56437691-56437710 MS.gene56001:CDS 35.0%
!! TTCACTTGCTGAATCACTTT+TGG + chr2.3:56436890-56436909 MS.gene56001:CDS 35.0%
!!! GATACTTTTTGGGATACCAA+GGG + chr2.3:56436297-56436316 MS.gene56001:CDS 35.0%
!!! TGATACTTTTTGGGATACCA+AGG + chr2.3:56436296-56436315 MS.gene56001:CDS 35.0%
!!! TGATGGATTTTTCCTTCATC+AGG - chr2.3:56436678-56436697 None:intergenic 35.0%
AAATTCGGAAAGGGCTACAT+TGG + chr2.3:56437258-56437277 MS.gene56001:CDS 40.0%
AAGAGGTTATCACCTGATGA+AGG + chr2.3:56436663-56436682 MS.gene56001:CDS 40.0%
AAGCCTATAGTTGAAGACAC+TGG + chr2.3:56437374-56437393 MS.gene56001:CDS 40.0%
AGAAGCTCTTCTTCTTGTGA+TGG - chr2.3:56436426-56436445 None:intergenic 40.0%
AGACACTGGTAAAAGATTGG+AGG + chr2.3:56437388-56437407 MS.gene56001:CDS 40.0%
CCGGAGAAAGAAAATCCAAA+AGG - chr2.3:56436843-56436862 None:intergenic 40.0%
CGAATGTGAAGATTGATGTG+TGG + chr2.3:56437819-56437838 MS.gene56001:CDS 40.0%
GAAGATCTAGGAGACTCTAA+TGG + chr2.3:56436357-56436376 MS.gene56001:CDS 40.0%
GGAGATATCATGAAGATAGC+TGG + chr2.3:56436756-56436775 MS.gene56001:CDS 40.0%
GGTGTTAAACTTAAAGGCGA+TGG - chr2.3:56436609-56436628 None:intergenic 40.0%
TCATGAAGATAGCTGGAACA+AGG + chr2.3:56436763-56436782 MS.gene56001:CDS 40.0%
! CTCTCATGACTGTTTCAAGT+TGG - chr2.3:56437568-56437587 None:intergenic 40.0%
! GATTCTTTGGCAAAGTGCTT+CGG - chr2.3:56437033-56437052 None:intergenic 40.0%
! GTTATCTTTAGAAGCTCGAG+TGG - chr2.3:56437323-56437342 None:intergenic 40.0%
!! CTTTGAAGTGCATGTGTTTC+CGG - chr2.3:56437357-56437376 None:intergenic 40.0%
!! GTTCAGTTTTGGTGTAACTG+AGG + chr2.3:56436254-56436273 MS.gene56001:CDS 40.0%
AACGAACCACACGCTTAACA+GGG - chr2.3:56437004-56437023 None:intergenic 45.0%
AGATCCTTGCTAACCTCTTC+AGG - chr2.3:56437116-56437135 None:intergenic 45.0%
TAACGAACCACACGCTTAAC+AGG - chr2.3:56437005-56437024 None:intergenic 45.0%
TAGAAGCTCGAGTGGACATT+CGG - chr2.3:56437315-56437334 None:intergenic 45.0%
TCGGCTACGACCATTACTAT+AGG - chr2.3:56437608-56437627 None:intergenic 45.0%
TGATCCTGAAGAGGTTAGCA+AGG + chr2.3:56437109-56437128 MS.gene56001:CDS 45.0%
TTTCTCTTCATCGGAGAGAC+CGG - chr2.3:56436862-56436881 None:intergenic 45.0%
! AAGATAACGGCTATTGCCAC+CGG + chr2.3:56437335-56437354 MS.gene56001:CDS 45.0%
! TCGATTGAAGCGCTTGCATT+AGG - chr2.3:56437289-56437308 None:intergenic 45.0%
!! TTGGCTTGCGCTGAAAAAGT+TGG + chr2.3:56436909-56436928 MS.gene56001:CDS 45.0%
AGGTAACCCTGTTAAGCGTG+TGG + chr2.3:56436995-56437014 MS.gene56001:CDS 50.0%
TGAAGTGCATGTGTTTCCGG+TGG - chr2.3:56437354-56437373 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 56436228 56438030 56436228 ID=MS.gene56001
chr2.3 mRNA 56436228 56438030 56436228 ID=MS.gene56001.t1;Parent=MS.gene56001
chr2.3 exon 56436228 56438030 56436228 ID=MS.gene56001.t1.exon1;Parent=MS.gene56001.t1
chr2.3 CDS 56436228 56438030 56436228 ID=cds.MS.gene56001.t1;Parent=MS.gene56001.t1
Gene Sequence

>MS.gene56001

ATGGAAAACTTGTGGGAATTTGGTGAGTTCAGTTTTGGTGTAACTGAGGATAAACTCAGTTCATCCAATGATACTTTTTGGGATACCAAGGGACTTGATACAATGAAAAATGTTCAATTTTCTGTAGAAGAAGATCTAGGAGACTCTAATGGAATTGAGTCTCTTTGCTCTAATTTTGGTTTCTTTCAAGATGATCCATCACAAGAAGAAGAGCTTCTTCTTTCCACTGATCAACAAAAGTATCATCACCACCAACCATATCAAGATTATGAAACTTTTGATAACTTCAACATTAACATGGTTCACTTTGATGAACAACAATGTCCTACAAGAATTCTTCCATTTTGTGACACAAAAAAGGACAATCAATATTACCAACCATCGCCTTTAAGTTTAACACCAGTCGAGATATTGAAAAATTATGGCAAAGGATTCAAGAGGTTATCACCTGATGAAGGAAAAATCCATCATCCTGTTAATGATTTTGATTTAGTTACAGATAATCAAAATGAGAGTAAGTTGTCAACTGGAGATATCATGAAGATAGCTGGAACAAGGTTCATACAATCATCATCTTCCTCAAAATCTATATCAGGTTTGATTCTTAATCACCCTTTTGGATTTTCTTTCTCCGGTCTCTCCGATGAAGAGAAAGAAGATGTTTCACTTGCTGAATCACTTTTGGCTTGCGCTGAAAAAGTTGGATATCAACAATTTGAACGCGCTAGAAAACTGTTATCACATATCAACTCTTTATCTTCGAAGACAGGTAACCCTGTTAAGCGTGTGGTTCGTTATTTTACCGAAGCACTTTGCCAAAGAATCGACAAAGAAACAGGAAGAGTTTCATCTAACAATACGCAAAAGATAGAATCTATATTTGATCCTGAAGAGGTTAGCAAGGATCTAAATCCAACCCTTATTGCATTTTTCGAAGAGCTTCCATTTGTTAAAGTTTCAATGTTCACATGTGTACAAGCTTTAATAGAAAACCTTAAAGATGCAAAGAAGATTCATGTTATTGATCTCGAAATTCGGAAAGGGCTACATTGGACAATCCTAATGCAAGCGCTTCAATCGAGAACCGAATGTCCACTCGAGCTTCTAAAGATAACGGCTATTGCCACCGGAAACACATGCACTTCAAAGCCTATAGTTGAAGACACTGGTAAAAGATTGGAGGATTTTGCACAAAGTTTGAACATACCTTTTTCGTTCAATACAATTATTGTATCTAACTTGTTACATCTAAGAGAAGATCTTTTCGAGAAAGATTCTAACGAAACCGTTGCAGTTTACTCTCAATTTGCTCTTAGAAGCAGTATTCAACAATCAGACCAACTTGAAACAGTCATGAGAGTTGTTAGAACTATAAATCCTATAGTAATGGTCGTAGCCGAGACTGAAGCTAATCACAATTCTAAATCTTTTGTGAACCGTTTCATCGAAGCACTTTTTTACTTTAGTGCGCTTTTTGATTGTTTGGAAGATTGTATGAAAGGTGATGAGAAGAACAGAATGATTATAGAATCATTGTACTTTAGTTATGGTATTAGGAATATTTTGGCTGAAGGAGTTGAAAGAAAGAGTACGAATGTGAAGATTGATGTGTGGAGAGCATTTTTCACAAGATTTGGAATGGTTGAAACAGAATTGAGTATGAAGTCTTTGTATCAAGCTGAATTGGTTGCTAAAAGATTTCCTTGTGGAAATTCTTGCACATTTGATATGAATGGTCATTGTCTTCTTATTGGATGGAAAGGAACACCAATTAACTCTGTTTCTGTTTGGAAATTCCTTTGA
Protein sequence

>MS.gene56001.t1

MENLWEFGEFSFGVTEDKLSSSNDTFWDTKGLDTMKNVQFSVEEDLGDSNGIESLCSNFGFFQDDPSQEEELLLSTDQQKYHHHQPYQDYETFDNFNINMVHFDEQQCPTRILPFCDTKKDNQYYQPSPLSLTPVEILKNYGKGFKRLSPDEGKIHHPVNDFDLVTDNQNESKLSTGDIMKIAGTRFIQSSSSSKSISGLILNHPFGFSFSGLSDEEKEDVSLAESLLACAEKVGYQQFERARKLLSHINSLSSKTGNPVKRVVRYFTEALCQRIDKETGRVSSNNTQKIESIFDPEEVSKDLNPTLIAFFEELPFVKVSMFTCVQALIENLKDAKKIHVIDLEIRKGLHWTILMQALQSRTECPLELLKITAIATGNTCTSKPIVEDTGKRLEDFAQSLNIPFSFNTIIVSNLLHLREDLFEKDSNETVAVYSQFALRSSIQQSDQLETVMRVVRTINPIVMVVAETEANHNSKSFVNRFIEALFYFSALFDCLEDCMKGDEKNRMIIESLYFSYGIRNILAEGVERKSTNVKIDVWRAFFTRFGMVETELSMKSLYQAELVAKRFPCGNSCTFDMNGHCLLIGWKGTPINSVSVWKFL