AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56173

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56173.t1 MTR_2g038040 85.116 215 23 1 1 206 1 215 1.17e-131 370
MS.gene56173.t1 MTR_8g064700 32.121 165 104 2 42 206 243 399 3.54e-22 93.2
MS.gene56173.t1 MTR_1g112680 29.224 219 128 6 12 206 280 495 4.83e-19 84.7
MS.gene56173.t1 MTR_2g084280 31.944 144 78 3 42 183 132 257 2.85e-17 78.6
MS.gene56173.t1 MTR_3g030700 36.709 158 84 6 42 195 195 340 2.28e-16 76.6
MS.gene56173.t1 MTR_3g498695 31.875 160 104 3 39 197 294 449 7.01e-16 75.5
MS.gene56173.t1 MTR_3g498695 31.875 160 104 3 39 197 294 449 7.29e-16 75.5
MS.gene56173.t1 MTR_4g057270 32.051 156 93 3 42 196 148 291 8.51e-16 74.7
MS.gene56173.t1 MTR_2g081040 33.129 163 92 5 42 197 176 328 1.61e-15 74.3
MS.gene56173.t1 MTR_3g104100 32.911 158 95 4 42 195 194 344 7.70e-15 72.4
MS.gene56173.t1 MTR_7g083900 32.500 160 103 3 40 197 283 439 1.01e-14 72.4
MS.gene56173.t1 MTR_7g083900 32.500 160 103 3 40 197 283 439 1.05e-14 72.4
MS.gene56173.t1 MTR_4g092700 26.263 198 124 5 2 197 122 299 5.68e-14 69.7
MS.gene56173.t1 MTR_7g117670 58.182 55 23 0 44 98 403 457 1.60e-13 68.9
MS.gene56173.t1 MTR_8g027495 55.932 59 26 0 44 102 459 517 1.94e-13 68.6
MS.gene56173.t1 MTR_7g096350 49.367 79 29 3 44 122 356 423 6.11e-13 67.0
MS.gene56173.t1 MTR_8g067280 51.667 60 29 0 44 103 463 522 1.14e-12 66.6
MS.gene56173.t1 MTR_5g030430 50.000 70 32 1 44 110 494 563 4.48e-12 64.7
MS.gene56173.t1 MTR_8g024770 50.000 62 24 1 44 105 280 334 6.58e-12 63.9
MS.gene56173.t1 MTR_2g104560 23.529 153 102 2 44 196 55 192 1.13e-11 62.0
MS.gene56173.t1 MTR_8g024790 44.286 70 28 1 44 102 292 361 1.90e-11 62.8
MS.gene56173.t1 MTR_1g072320 47.368 57 30 0 32 88 459 515 2.71e-11 62.4
MS.gene56173.t1 MTR_5g030770 34.395 157 81 4 39 195 152 286 4.38e-11 61.2
MS.gene56173.t1 MTR_2g010450 49.091 55 28 0 44 98 178 232 5.37e-11 61.2
MS.gene56173.t1 MTR_4g091910 35.000 140 63 5 41 155 45 181 6.08e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56173.t1 AT5G57150 63.402 194 66 4 13 206 25 213 7.75e-73 220
MS.gene56173.t1 AT5G57150 64.211 190 63 4 17 206 30 214 8.66e-73 220
MS.gene56173.t1 AT5G57150 64.211 190 63 4 17 206 30 214 8.91e-73 220
MS.gene56173.t1 AT5G57150 63.402 194 66 4 13 206 25 213 9.98e-73 221
MS.gene56173.t1 AT5G57150 64.211 190 63 4 17 206 30 214 1.15e-71 218
MS.gene56173.t1 AT4G29930 48.899 227 93 3 1 206 1 225 1.09e-64 200
MS.gene56173.t1 AT4G29930 48.899 227 93 3 1 206 1 225 1.51e-64 200
MS.gene56173.t1 AT4G29930 48.899 227 93 3 1 206 1 225 1.51e-64 200
MS.gene56173.t1 AT4G29930 48.848 217 82 3 1 206 1 199 4.13e-62 193
MS.gene56173.t1 AT4G29930 48.387 217 80 3 1 206 1 196 1.83e-61 191
MS.gene56173.t1 AT4G29930 48.387 217 80 3 1 206 1 196 2.60e-61 191
MS.gene56173.t1 AT4G29930 46.821 173 73 2 1 154 1 173 2.29e-42 141
MS.gene56173.t1 AT2G28160 32.278 158 91 4 42 196 130 274 4.74e-18 80.9
MS.gene56173.t1 AT2G28160 32.278 158 91 4 42 196 130 274 4.94e-18 80.9
MS.gene56173.t1 AT3G26744 31.646 158 105 1 40 197 304 458 3.49e-15 73.6
MS.gene56173.t1 AT3G26744 31.646 158 105 1 40 197 304 458 3.49e-15 73.6
MS.gene56173.t1 AT3G26744 31.646 158 105 1 40 197 304 458 3.49e-15 73.6
MS.gene56173.t1 AT3G26744 31.646 158 105 1 40 197 304 458 3.77e-15 73.6
MS.gene56173.t1 AT1G01260 48.101 79 37 1 44 122 434 508 4.38e-15 73.6
MS.gene56173.t1 AT1G01260 48.101 79 37 1 44 122 434 508 4.38e-15 73.6
MS.gene56173.t1 AT1G01260 48.101 79 37 1 44 122 434 508 4.38e-15 73.6
MS.gene56173.t1 AT2G16910 27.624 181 108 4 42 206 313 486 3.42e-14 70.9
MS.gene56173.t1 AT1G12860 32.500 160 97 3 40 197 264 414 4.58e-14 70.5
MS.gene56173.t1 AT1G12860 32.500 160 97 3 40 197 264 414 5.03e-14 70.5
MS.gene56173.t1 AT2G46510 58.182 55 23 0 44 98 396 450 5.80e-14 70.1
MS.gene56173.t1 AT4G16430 47.368 76 39 1 44 118 321 396 1.75e-13 68.6
MS.gene56173.t1 AT5G46760 34.416 154 84 7 44 193 416 556 5.27e-13 67.4
MS.gene56173.t1 AT1G32640 55.000 60 25 1 44 103 453 510 7.60e-13 67.0
MS.gene56173.t1 AT1G63650 28.994 169 113 3 41 203 403 570 1.63e-12 65.9
MS.gene56173.t1 AT1G63650 28.994 169 113 3 41 203 403 570 1.63e-12 65.9
MS.gene56173.t1 AT1G63650 28.994 169 113 3 41 203 403 570 1.63e-12 65.9
MS.gene56173.t1 AT4G37850 29.268 164 97 5 44 203 153 301 5.16e-12 63.9
MS.gene56173.t1 AT4G37850 29.268 164 97 5 44 203 153 301 5.16e-12 63.9
MS.gene56173.t1 AT4G17880 50.000 60 30 0 44 103 417 476 7.13e-12 64.3
MS.gene56173.t1 AT5G46830 29.605 152 88 3 44 193 344 478 7.90e-11 60.8

Find 45 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAATGGAACTTGAATT+TGG 0.174122 2.3:+50866599 MS.gene56173:CDS
CTGATTTGTTCTCTTCTTCT+TGG 0.191764 2.3:-50866684 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2.3:+50866523 MS.gene56173:CDS
TAGTTTGGATTAATATTATT+AGG 0.309618 2.3:-50866626 None:intergenic
GGATTGGATGAGGCTTTAAC+AGG 0.339402 2.3:+50865989 MS.gene56173:CDS
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2.3:-50866136 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2.3:-50866135 None:intergenic
GCCTGAGAAAGAGGATATAT+TGG 0.364460 2.3:-50867896 None:intergenic
TTGTGGTTGCAGTTGGGGAT+TGG 0.368783 2.3:+50865973 MS.gene56173:intron
TCTTGATCAAAATCATAGTT+TGG 0.369624 2.3:-50866641 None:intergenic
TTTACCTCAAGGACTTCAAT+TGG 0.374167 2.3:-50866737 None:intergenic
GGTTATTCAAGCTGAGATAA+TGG 0.376023 2.3:+50866586 MS.gene56173:CDS
TTGCAGTTGGGGATTGGATG+AGG 0.422701 2.3:+50865979 MS.gene56173:intron
GTGCTGAGTACAACCCTTAC+CGG 0.425637 2.3:+50865839 MS.gene56173:CDS
ACATTGTCTCTGAGAGGAAC+AGG 0.441534 2.3:+50866068 MS.gene56173:CDS
TACATGTTGGTCTCCCGGTA+AGG 0.449399 2.3:-50865853 None:intergenic
AGATAATGGAACTTGAATTT+GGG 0.453081 2.3:+50866600 MS.gene56173:CDS
TGAGCATGACATGTAACAAA+AGG 0.468788 2.3:+50867812 MS.gene56173:CDS
GCGGATGGTGCAGCATCATC+AGG 0.473222 2.3:+50866031 MS.gene56173:CDS
GCCAATATATCCTCTTTCTC+AGG 0.477840 2.3:+50867895 MS.gene56173:CDS
ACACATGGAAGAGAATATAA+TGG 0.483631 2.3:+50867786 MS.gene56173:CDS
CGAAAGCCTGCCTGAGAAAG+AGG 0.487286 2.3:-50867905 None:intergenic
TTACCTACATGTTGGTCTCC+CGG 0.526666 2.3:-50865858 None:intergenic
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2.3:+50866660 MS.gene56173:CDS
ACATGTTGGTCTCCCGGTAA+GGG 0.528733 2.3:-50865852 None:intergenic
ATATATCCTCTTTCTCAGGC+AGG 0.530610 2.3:+50867899 MS.gene56173:CDS
TGATGATGCTGCACCATCCG+CGG 0.544506 2.3:-50866029 None:intergenic
GAGCATGACATGTAACAAAA+GGG 0.547151 2.3:+50867813 MS.gene56173:CDS
CTTTCCAATTGAAGTCCTTG+AGG 0.548914 2.3:+50866733 MS.gene56173:CDS
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2.3:-50866668 None:intergenic
CTCAGCACCAATGTTCTCCA+TGG 0.577641 2.3:-50865824 None:intergenic
TGCTGAGTACAACCCTTACC+GGG 0.581537 2.3:+50865840 MS.gene56173:CDS
TTCGAAGACAGTCTTCATTG+AGG 0.583420 2.3:+50867924 MS.gene56173:CDS
GCAGCTTAGGGTTACACACA+TGG 0.606797 2.3:+50867771 MS.gene56173:intron
TTAACAACCATGGAGAACAT+TGG 0.610292 2.3:+50865817 None:intergenic
TAACAAAAGGGCAGACACAA+TGG 0.615640 2.3:+50867825 MS.gene56173:CDS
TATGATTCAAGCTCCGCGGA+TGG 0.621734 2.3:+50866016 MS.gene56173:CDS
GATTGGATGAGGCTTTAACA+GGG 0.623983 2.3:+50865990 MS.gene56173:CDS
GGACCACTGCTCTAAGTGCA+AGG 0.633774 2.3:-50866114 None:intergenic
AGTCTTGCATGAGCAAGAGA+AGG 0.639595 2.3:+50866565 MS.gene56173:CDS
CTAAGAACATTGTCTCTGAG+AGG 0.650410 2.3:+50866062 MS.gene56173:CDS
ACTCCTTGCACTTAGAGCAG+TGG 0.656584 2.3:+50866111 MS.gene56173:CDS
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2.3:+50866129 MS.gene56173:CDS
TTGTCTCTGAGAGGAACAGG+AGG 0.687982 2.3:+50866071 MS.gene56173:CDS
GTATTATGATTCAAGCTCCG+CGG 0.725456 2.3:+50866012 MS.gene56173:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATCAATATTTATAT+TGG - chr2.3:50867328-50867347 None:intergenic 10.0%
!! ATATTGTTAATTAAGATATA+TGG + chr2.3:50865950-50865969 MS.gene56173:intron 10.0%
!! TAGTGAAAATTATTAATTAA+TGG - chr2.3:50866178-50866197 None:intergenic 10.0%
!! TTGTTAAAAAAAAAAAAAAG+TGG - chr2.3:50867575-50867594 None:intergenic 10.0%
!!! ATATATTAGCTTTATTTTTT+AGG + chr2.3:50867527-50867546 MS.gene56173:intron 10.0%
!!! TTGATTTTTTATTATTTGTT+TGG + chr2.3:50866224-50866243 MS.gene56173:intron 10.0%
!!! TTTTAAAAGTAATTATAAGA+TGG - chr2.3:50867159-50867178 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAAGTTG+GGG - chr2.3:50866850-50866869 None:intergenic 10.0%
!! ACTCTTAAAGTATAAAAATT+AGG - chr2.3:50867041-50867060 None:intergenic 15.0%
!! AGATAAAAAAAATAGATAGT+GGG + chr2.3:50867415-50867434 MS.gene56173:intron 15.0%
!! CTCTTAAAGTATAAAAATTA+GGG - chr2.3:50867040-50867059 None:intergenic 15.0%
!! TAGTTTGGATTAATATTATT+AGG - chr2.3:50866629-50866648 None:intergenic 15.0%
!!! AAAGATCTTTTGAAATTTAA+TGG - chr2.3:50867227-50867246 None:intergenic 15.0%
!!! ATCAATTTCTTTTTAATGAT+GGG + chr2.3:50866478-50866497 MS.gene56173:intron 15.0%
!!! CTAATATATTTTCTCTATTA+GGG - chr2.3:50867516-50867535 None:intergenic 15.0%
!!! TGTGTAATTAATTTGATATA+TGG + chr2.3:50867742-50867761 MS.gene56173:intron 15.0%
!!! TTTAATCTATATTTGTTGTT+GGG - chr2.3:50867604-50867623 None:intergenic 15.0%
!! ATGCTAAAAAAATAAATGTG+GGG + chr2.3:50867663-50867682 MS.gene56173:intron 20.0%
!! CAAATAATTATACCATATGA+TGG - chr2.3:50866440-50866459 None:intergenic 20.0%
!! CATCATATGGTATAATTATT+TGG + chr2.3:50866438-50866457 MS.gene56173:intron 20.0%
!! GAGATAAAAAAAATAGATAG+TGG + chr2.3:50867414-50867433 MS.gene56173:intron 20.0%
!! GATGCTAAAAAAATAAATGT+GGG + chr2.3:50867662-50867681 MS.gene56173:intron 20.0%
!! TAATTATAAGATGGTCATTA+CGG - chr2.3:50867150-50867169 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG + chr2.3:50867661-50867680 MS.gene56173:intron 20.0%
!! TTAAAAAGAAATTGATGTCA+TGG - chr2.3:50866474-50866493 None:intergenic 20.0%
!! TTAATTAAGATATATGGTTG+TGG + chr2.3:50865956-50865975 MS.gene56173:intron 20.0%
!! TTATAAATTGGTTATAAGCA+TGG - chr2.3:50867450-50867469 None:intergenic 20.0%
!!! AATTTTCACTACTCAATTTT+TGG + chr2.3:50866187-50866206 MS.gene56173:intron 20.0%
!!! ATTTTCACTACTCAATTTTT+GGG + chr2.3:50866188-50866207 MS.gene56173:intron 20.0%
!!! CATCAATTTCTTTTTAATGA+TGG + chr2.3:50866477-50866496 MS.gene56173:intron 20.0%
!!! CTTTAATCTATATTTGTTGT+TGG - chr2.3:50867605-50867624 None:intergenic 20.0%
!!! GCTAATATATTTTCTCTATT+AGG - chr2.3:50867517-50867536 None:intergenic 20.0%
!!! TGAATCTAAGATTAAGTTTA+TGG - chr2.3:50867065-50867084 None:intergenic 20.0%
!!! TTAATCTATATTTGTTGTTG+GGG - chr2.3:50867603-50867622 None:intergenic 20.0%
!!! TTTTTTAAACATGTTGTTAG+AGG + chr2.3:50866376-50866395 MS.gene56173:intron 20.0%
! AGATTAAAGAAGAAATTGCA+AGG + chr2.3:50867616-50867635 MS.gene56173:intron 25.0%
! AGTACGAAAGTAAATGAATT+TGG + chr2.3:50866257-50866276 MS.gene56173:intron 25.0%
! CAAAAATAAGACATTGTATG+AGG + chr2.3:50867286-50867305 MS.gene56173:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG + chr2.3:50866523-50866542 MS.gene56173:CDS 25.0%
! TAAGGTGGTGATTTATAAAT+TGG - chr2.3:50867462-50867481 None:intergenic 25.0%
! TATAAATCACCACCTTAATA+AGG + chr2.3:50867465-50867484 MS.gene56173:intron 25.0%
! TCTTGATCAAAATCATAGTT+TGG - chr2.3:50866644-50866663 None:intergenic 25.0%
!! GTAAACATCACAAATTTTAG+TGG + chr2.3:50866151-50866170 MS.gene56173:intron 25.0%
!! TATATTGGAAATTTTTGCAC+AGG - chr2.3:50867313-50867332 None:intergenic 25.0%
!!! AATTTCTTTTTAATGATGGG+TGG + chr2.3:50866481-50866500 MS.gene56173:intron 25.0%
!!! AGATAATGGAACTTGAATTT+GGG + chr2.3:50866600-50866619 MS.gene56173:CDS 25.0%
!!! TAATCTATATTTGTTGTTGG+GGG - chr2.3:50867602-50867621 None:intergenic 25.0%
AAAGTGGATAAAGTCTGATT+TGG - chr2.3:50867559-50867578 None:intergenic 30.0%
ACACATGGAAGAGAATATAA+TGG + chr2.3:50867786-50867805 MS.gene56173:CDS 30.0%
ATGTTTACCTTGCTAATGTT+TGG - chr2.3:50866139-50866158 None:intergenic 30.0%
GGAAAATTTCAACCATCATA+TGG + chr2.3:50866425-50866444 MS.gene56173:intron 30.0%
TCACTTTGATTCAAGTATGA+AGG + chr2.3:50865895-50865914 MS.gene56173:intron 30.0%
TGATATTGTTACCTACATGT+TGG - chr2.3:50865869-50865888 None:intergenic 30.0%
TGTTTACCTTGCTAATGTTT+GGG - chr2.3:50866138-50866157 None:intergenic 30.0%
TTGATGTCTTTGACATCTAT+TGG + chr2.3:50866404-50866423 MS.gene56173:intron 30.0%
! TAATTGAAGCTTTATCCATC+TGG - chr2.3:50866520-50866539 None:intergenic 30.0%
!! GAGATAATGGAACTTGAATT+TGG + chr2.3:50866599-50866618 MS.gene56173:CDS 30.0%
AAAATAAATGTGGGGTGTGA+TGG + chr2.3:50867671-50867690 MS.gene56173:intron 35.0%
AATGGTAGACCTTATTAAGG+TGG - chr2.3:50867477-50867496 None:intergenic 35.0%
GAGCATGACATGTAACAAAA+GGG + chr2.3:50867813-50867832 MS.gene56173:CDS 35.0%
GCATCAATAATACAAGAGAG+AGG - chr2.3:50867647-50867666 None:intergenic 35.0%
GGTTATTCAAGCTGAGATAA+TGG + chr2.3:50866586-50866605 MS.gene56173:CDS 35.0%
TGAGCATGACATGTAACAAA+AGG + chr2.3:50867812-50867831 MS.gene56173:CDS 35.0%
TTGAAGTCCTTGAGGTAAAT+TGG + chr2.3:50866741-50866760 MS.gene56173:intron 35.0%
TTTACCTCAAGGACTTCAAT+TGG - chr2.3:50866740-50866759 None:intergenic 35.0%
!! CTGATTTGTTCTCTTCTTCT+TGG - chr2.3:50866687-50866706 None:intergenic 35.0%
AGAGATGATGATAGAGACAG+TGG - chr2.3:50866768-50866787 None:intergenic 40.0%
ATATATCCTCTTTCTCAGGC+AGG + chr2.3:50867899-50867918 MS.gene56173:CDS 40.0%
ATATGGTTGAGTGCAGCTTA+GGG + chr2.3:50867759-50867778 MS.gene56173:intron 40.0%
ATATGGTTGTGGTTGCAGTT+GGG + chr2.3:50865967-50865986 MS.gene56173:intron 40.0%
CTAAGAACATTGTCTCTGAG+AGG + chr2.3:50866062-50866081 MS.gene56173:CDS 40.0%
CTTTCCAATTGAAGTCCTTG+AGG + chr2.3:50866733-50866752 MS.gene56173:CDS 40.0%
GAGATGATGATAGAGACAGT+GGG - chr2.3:50866767-50866786 None:intergenic 40.0%
GCCAATATATCCTCTTTCTC+AGG + chr2.3:50867895-50867914 MS.gene56173:CDS 40.0%
GCCTGAGAAAGAGGATATAT+TGG - chr2.3:50867899-50867918 None:intergenic 40.0%
GGCAATGGTAGACCTTATTA+AGG - chr2.3:50867480-50867499 None:intergenic 40.0%
GTATTATGATTCAAGCTCCG+CGG + chr2.3:50866012-50866031 MS.gene56173:CDS 40.0%
TAACAAAAGGGCAGACACAA+TGG + chr2.3:50867825-50867844 MS.gene56173:CDS 40.0%
TATATGGTTGAGTGCAGCTT+AGG + chr2.3:50867758-50867777 MS.gene56173:intron 40.0%
TATATGGTTGTGGTTGCAGT+TGG + chr2.3:50865966-50865985 MS.gene56173:intron 40.0%
! GATTGGATGAGGCTTTAACA+GGG + chr2.3:50865990-50866009 MS.gene56173:CDS 40.0%
! GGTGACTTTCTTTTTCCAGA+TGG + chr2.3:50866502-50866521 MS.gene56173:intron 40.0%
! TTCTCTATTAGGGTACCTGA+TGG - chr2.3:50867506-50867525 None:intergenic 40.0%
!! CTATATTTGTTGTTGGGGGT+TGG - chr2.3:50867598-50867617 None:intergenic 40.0%
AGTCTTGCATGAGCAAGAGA+AGG + chr2.3:50866565-50866584 MS.gene56173:CDS 45.0%
AGTGGTCCCAAACATTAGCA+AGG + chr2.3:50866129-50866148 MS.gene56173:CDS 45.0%
ATCACTGAGCTCACAACTCA+TGG + chr2.3:50866910-50866929 MS.gene56173:intron 45.0%
TATGGTTGTGGTTGCAGTTG+GGG + chr2.3:50865968-50865987 MS.gene56173:intron 45.0%
TTCTTGGACCTTAGCAACAC+AGG - chr2.3:50866671-50866690 None:intergenic 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG + chr2.3:50866660-50866679 MS.gene56173:CDS 45.0%
! ACATTGTCTCTGAGAGGAAC+AGG + chr2.3:50866068-50866087 MS.gene56173:CDS 45.0%
! GGATTGGATGAGGCTTTAAC+AGG + chr2.3:50865989-50866008 MS.gene56173:CDS 45.0%
! TATTAGGGTACCTGATGGTG+TGG - chr2.3:50867501-50867520 None:intergenic 45.0%
! TTACCTACATGTTGGTCTCC+CGG - chr2.3:50865861-50865880 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAAG+AGG + chr2.3:50866857-50866876 MS.gene56173:intron 5.0%
!!! TTTTTTTTTTTTTTTAAGTT+GGG - chr2.3:50866851-50866870 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTAAGT+TGG - chr2.3:50866852-50866871 None:intergenic 5.0%
ACTCCTTGCACTTAGAGCAG+TGG + chr2.3:50866111-50866130 MS.gene56173:CDS 50.0%
CAGTGGGCCAATTTACCTCA+AGG - chr2.3:50866751-50866770 None:intergenic 50.0%
GCAGCTTAGGGTTACACACA+TGG + chr2.3:50867771-50867790 MS.gene56173:intron 50.0%
GTGCTGAGTACAACCCTTAC+CGG + chr2.3:50865839-50865858 MS.gene56173:CDS 50.0%
TATGATTCAAGCTCCGCGGA+TGG + chr2.3:50866016-50866035 MS.gene56173:CDS 50.0%
TCTACCATTGCCACACCATC+AGG + chr2.3:50867488-50867507 MS.gene56173:intron 50.0%
TGCTGAGTACAACCCTTACC+GGG + chr2.3:50865840-50865859 MS.gene56173:CDS 50.0%
TTACCGGGAGACCAACATGT+AGG + chr2.3:50865855-50865874 MS.gene56173:intron 50.0%
TTGCAGTTGGGGATTGGATG+AGG + chr2.3:50865979-50865998 MS.gene56173:intron 50.0%
TTGTGGTTGCAGTTGGGGAT+TGG + chr2.3:50865973-50865992 MS.gene56173:intron 50.0%
! ACATGTTGGTCTCCCGGTAA+GGG - chr2.3:50865855-50865874 None:intergenic 50.0%
! TACATGTTGGTCTCCCGGTA+AGG - chr2.3:50865856-50865875 None:intergenic 50.0%
! TTGTCTCTGAGAGGAACAGG+AGG + chr2.3:50866071-50866090 MS.gene56173:CDS 50.0%
CGAAAGCCTGCCTGAGAAAG+AGG - chr2.3:50867908-50867927 None:intergenic 55.0%
! GGACCACTGCTCTAAGTGCA+AGG - chr2.3:50866117-50866136 None:intergenic 55.0%
! GGTACCTGATGGTGTGGCAA+TGG - chr2.3:50867495-50867514 None:intergenic 55.0%
! TGATGATGCTGCACCATCCG+CGG - chr2.3:50866032-50866051 None:intergenic 55.0%
GCGGATGGTGCAGCATCATC+AGG + chr2.3:50866031-50866050 MS.gene56173:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 50865826 50867945 50865826 ID=MS.gene56173
chr2.3 mRNA 50865826 50867945 50865826 ID=MS.gene56173.t1;Parent=MS.gene56173
chr2.3 exon 50865826 50865872 50865826 ID=MS.gene56173.t1.exon1;Parent=MS.gene56173.t1
chr2.3 CDS 50865826 50865872 50865826 ID=cds.MS.gene56173.t1;Parent=MS.gene56173.t1
chr2.3 exon 50865985 50866150 50865985 ID=MS.gene56173.t1.exon2;Parent=MS.gene56173.t1
chr2.3 CDS 50865985 50866150 50865985 ID=cds.MS.gene56173.t1;Parent=MS.gene56173.t1
chr2.3 exon 50866521 50866754 50866521 ID=MS.gene56173.t1.exon3;Parent=MS.gene56173.t1
chr2.3 CDS 50866521 50866754 50866521 ID=cds.MS.gene56173.t1;Parent=MS.gene56173.t1
chr2.3 exon 50867775 50867945 50867775 ID=MS.gene56173.t1.exon4;Parent=MS.gene56173.t1
chr2.3 CDS 50867775 50867945 50867775 ID=cds.MS.gene56173.t1;Parent=MS.gene56173.t1
Gene Sequence

>MS.gene56173

ATGGAGAACATTGGTGCTGAGTACAACCCTTACCGGGAGACCAACATGTAGGTAACAATATCATTTAATTCACTTTGATTCAAGTATGAAGGTACAATTAGTGAAATTAAATTAATTATAATTAATATTGTTAATTAAGATATATGGTTGTGGTTGCAGTTGGGGATTGGATGAGGCTTTAACAGGGTATTATGATTCAAGCTCCGCGGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGTCTCTGAGAGGAACAGGAGGAATAAGCTTAATGAAAGACTCCTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGGTAAACATCACAAATTTTAGTGGTCCATTAATTAATAATTTTCACTACTCAATTTTTGGGTGCAATTTTGCTGTTGATTTTTTATTATTTGTTTGGATAAAATATAAGTACGAAAGTAAATGAATTTGGTTCATATTTAGACTATATATACATGTATTGTTTTGCTTATATTTTATTACAGATAGAGTAATTAATATTATGTGACACAGTGAATAAGTAATTTAATTTTTTAAACATGTTGTTAGAGGTTTGATTGATGTCTTTGACATCTATTGGAAAATTTCAACCATCATATGGTATAATTATTTGGAATGATTAGTCCATGACATCAATTTCTTTTTAATGATGGGTGGTGACTTTCTTTTTCCAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATACAAGTCTTGCATGAGCAAGAGAAGGTTATTCAAGCTGAGATAATGGAACTTGAATTTGGGATGCCTAATAATATTAATCCAAACTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAAATCAGTTATATGATTCTATCAGTACAAGAAACTTTCCAATTGAAGTCCTTGAGGTAAATTGGCCCACTGTCTCTATCATCATCTCTTTCTGTTTCTTGAAATTTTTTAAGAATCAAAATGAACGAATACATTAAGAAATAGTATTCCCCAACTTAAAAAAAAAAAAAAAAAAAAGAGGAGATAGATAAATTATTATTATTAAATTGTTATCACTGAGCTCACAACTCATGGACAAACGACTCAAAAACAACTTAGTTCAAAAAAGAGAAAATCAAAGAGCACAAAACTATTTTTTTATAAGCAAACAATATTTAAATTAAAATAGTACAAACATACCCTAATTTTTATACTTTAAGAGTACCATAAACTTAATCTTAGATTCACACATCATTAATTTTAATAAAATAATTAAAGAAGAAGAAAATCATCACTAATTAAAGTGACACCGTAATGACCATCTTATAATTACTTTTAAAAGAATTTAAATTTTATTTGTTGTAAATTACAAAGTCGAATCTCATACCATTAAATTTCAAAAGATCTTTACATTATTTATAAAACGAACAATGATATTTAATTAAACACAAAAATAAGACATTGTATGAGGACCTGTGCAAAAATTTCCAATATAAATATTGATTTGATTAGAAGACAGAAAAAATAATTAAAAATAATGTAAATGAAATATAATTTCTCTAATAAAATAGATAGTGAGATAAAAAAAATAGATAGTGGGATTTTCAAACCATGCTTATAACCAATTTATAAATCACCACCTTAATAAGGTCTACCATTGCCACACCATCAGGTACCCTAATAGAGAAAATATATTAGCTTTATTTTTTAGGTTCATACCAAATCAGACTTTATCCACTTTTTTTTTTTTTTAACAACCAACCCCCAACAACAAATATAGATTAAAGAAGAAATTGCAAGGCATCACCTCTCTCTTGTATTATTGATGCTAAAAAAATAAATGTGGGGTGTGATGGTTATAACTTTATAATTATCTTTGAATTTCTAAAGTAATTAATTATGAGTGTGTAATTAATTTGATATATGGTTGAGTGCAGCTTAGGGTTACACACATGGAAGAGAATATAATGGTAGTGAGCATGACATGTAACAAAAGGGCAGACACAATGGTAAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTCAAAATTATTACTGCCAATATATCCTCTTTCTCAGGCAGGCTTTCGAAGACAGTCTTCATTGAG
Protein sequence

>MS.gene56173.t1

MENIGAEYNPYRETNIWGLDEALTGYYDSSSADGAASSGVSSKNIVSERNRRNKLNERLLALRAVVPNISKMDKASIIKDAIEYIQVLHEQEKVIQAEIMELEFGMPNNINPNYDFDQELPVLLRSKKKRTNQLYDSISTRNFPIEVLELRVTHMEENIMVVSMTCNKRADTMVKLCEVFESLKLKIITANISSFSGRLSKTVFIE