Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56283.t1 | XP_024633556.1 | 94 | 201 | 12 | 0 | 25 | 225 | 34 | 234 | 3.80E-100 | 374.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56283.t1 | Q9LTT3 | 50.0 | 186 | 77 | 3 | 25 | 208 | 34 | 205 | 1.2e-41 | 171.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56283.t1 | I3SK14 | 94.0 | 201 | 12 | 0 | 25 | 225 | 34 | 234 | 4.6e-100 | 373.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56283.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56283.t1 | MTR_3g009890 | 94.416 | 197 | 11 | 0 | 17 | 213 | 26 | 222 | 1.03e-134 | 380 |
| MS.gene56283.t1 | MTR_3g114920 | 45.000 | 220 | 113 | 3 | 1 | 215 | 1 | 217 | 1.79e-54 | 177 |
| MS.gene56283.t1 | MTR_1g116180 | 46.667 | 210 | 94 | 5 | 12 | 205 | 15 | 222 | 5.16e-52 | 171 |
| MS.gene56283.t1 | MTR_1g116180 | 46.667 | 210 | 94 | 5 | 12 | 205 | 15 | 222 | 5.27e-51 | 171 |
| MS.gene56283.t1 | MTR_7g005970 | 45.455 | 209 | 101 | 4 | 6 | 201 | 9 | 217 | 5.95e-50 | 169 |
| MS.gene56283.t1 | MTR_2g084375 | 83.871 | 62 | 10 | 0 | 159 | 220 | 201 | 262 | 1.60e-25 | 100 |
| MS.gene56283.t1 | MTR_2g084410 | 83.871 | 62 | 10 | 0 | 159 | 220 | 215 | 276 | 1.69e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56283.t1 | AT3G13350 | 50.000 | 186 | 77 | 3 | 25 | 208 | 34 | 205 | 3.01e-52 | 171 |
| MS.gene56283.t1 | AT1G55650 | 46.277 | 188 | 81 | 4 | 26 | 209 | 29 | 200 | 2.60e-51 | 169 |
| MS.gene56283.t1 | AT1G04880 | 44.103 | 195 | 101 | 3 | 16 | 202 | 14 | 208 | 9.09e-48 | 163 |
| MS.gene56283.t1 | AT1G76110 | 47.027 | 185 | 91 | 4 | 21 | 201 | 28 | 209 | 1.90e-45 | 154 |
Find 62 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTGATGCTAACCTCTTC+TGG | 0.176030 | 3.1:-5128372 | MS.gene56283:CDS |
| GGAGCAATTAGTAGGAAAAT+TGG | 0.205100 | 3.1:-5125584 | MS.gene56283:CDS |
| GTTCAGTCTCACGCGGATTT+TGG | 0.242316 | 3.1:+5128440 | None:intergenic |
| TGTTTCAAGCAATGCATCTA+AGG | 0.259440 | 3.1:-5125759 | MS.gene56283:CDS |
| TATCAATGATTCACCTGTTC+AGG | 0.286987 | 3.1:-5126940 | MS.gene56283:CDS |
| AGGTAATTGTAGATCGTAAA+TGG | 0.317695 | 3.1:-5127238 | MS.gene56283:CDS |
| TGTGTAGGATTCCTACTATA+GGG | 0.338046 | 3.1:-5127549 | MS.gene56283:intron |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.354657 | 3.1:+5125881 | None:intergenic |
| GAGCAATTAGTAGGAAAATT+GGG | 0.369568 | 3.1:-5125583 | MS.gene56283:CDS |
| CATAACAAGCGCATCATTCA+TGG | 0.386953 | 3.1:-5127180 | MS.gene56283:CDS |
| CGTATTGGTTGTGAAGCTAT+TGG | 0.406695 | 3.1:+5126974 | None:intergenic |
| TTCATTGACTTACCCTGAAC+AGG | 0.413930 | 3.1:+5126927 | None:intergenic |
| TTGTGTAGGATTCCTACTAT+AGG | 0.432421 | 3.1:-5127550 | MS.gene56283:intron |
| GTGATAAAGCAACGATAGAT+AGG | 0.439414 | 3.1:+5127148 | None:intergenic |
| TCGTGATGCTAACCTCTTCT+GGG | 0.445073 | 3.1:-5128371 | MS.gene56283:CDS |
| CATGAATGATGCGCTTGTTA+TGG | 0.445119 | 3.1:+5127181 | None:intergenic |
| GAGTAGAGAGCGGTTGGAGG+AGG | 0.454942 | 3.1:+5128403 | None:intergenic |
| TCTAAGGGTTCTTCTATTGA+AGG | 0.459768 | 3.1:-5125743 | MS.gene56283:intron |
| ACAATTGACATGAAATTTGA+TGG | 0.468681 | 3.1:-5125839 | MS.gene56283:CDS |
| ATATATAGTTACGGTGGACC+TGG | 0.474943 | 3.1:-5125813 | MS.gene56283:CDS |
| GATAGCAGCACCGTCCGTAT+TGG | 0.475279 | 3.1:+5126959 | None:intergenic |
| ATCTCGTGGTGGTATTGAAA+AGG | 0.485522 | 3.1:-5127485 | MS.gene56283:intron |
| CTTCACTAACCAGGTGTTGA+GGG | 0.490947 | 3.1:+5127089 | None:intergenic |
| CTCTATCCAGATGCTTTGAG+TGG | 0.513745 | 3.1:-5127005 | MS.gene56283:intron |
| CATTGCTTGAAACATGATAC+AGG | 0.516873 | 3.1:+5125768 | None:intergenic |
| ATCAATGATTCACCTGTTCA+GGG | 0.519797 | 3.1:-5126939 | MS.gene56283:intron |
| TTCCTACTAATTGCTCCTTG+TGG | 0.533197 | 3.1:+5125590 | None:intergenic |
| AGGTCAGAGTAGAGAGCGGT+TGG | 0.533695 | 3.1:+5128397 | None:intergenic |
| TCAGAGTAGAGAGCGGTTGG+AGG | 0.537076 | 3.1:+5128400 | None:intergenic |
| GGAAAATTGGGTTTGCGTGG+AGG | 0.541228 | 3.1:-5125571 | MS.gene56283:CDS |
| CAATAGCTTCACAACCAATA+CGG | 0.543956 | 3.1:-5126973 | MS.gene56283:CDS |
| TGATGGCGGATATATAGTTA+CGG | 0.545231 | 3.1:-5125822 | MS.gene56283:CDS |
| CAAGTCCCTCCCTCAACACC+TGG | 0.550783 | 3.1:-5127098 | MS.gene56283:intron |
| ATTAGTCCAGCACAGACACT+TGG | 0.556813 | 3.1:-5125878 | MS.gene56283:CDS |
| GGCCACAAGGAGCAATTAGT+AGG | 0.560286 | 3.1:-5125592 | MS.gene56283:CDS |
| GAAGAACCAAGTGTCTGTGC+TGG | 0.560864 | 3.1:+5125872 | None:intergenic |
| ATGCGCTTGTTATGGTATCT+CGG | 0.562285 | 3.1:+5127189 | None:intergenic |
| CTTCAACGAAGAGGTGATGC+AGG | 0.562980 | 3.1:+5127512 | None:intergenic |
| GTTTCAAGCAATGCATCTAA+GGG | 0.563003 | 3.1:-5125758 | MS.gene56283:CDS |
| GTGTAGGATTCCTACTATAG+GGG | 0.574437 | 3.1:-5127548 | MS.gene56283:intron |
| TTCGTTGAAGTAACATCTCG+TGG | 0.581244 | 3.1:-5127499 | MS.gene56283:CDS |
| TCTTCACTAACCAGGTGTTG+AGG | 0.585501 | 3.1:+5127088 | None:intergenic |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 3.1:-5125794 | MS.gene56283:CDS |
| GTAGGAAAATTGGGTTTGCG+TGG | 0.592801 | 3.1:-5125574 | MS.gene56283:CDS |
| GAGCGGTTGGAGGAGGACAA+AGG | 0.594063 | 3.1:+5128410 | None:intergenic |
| CACTAACCAGGTGTTGAGGG+AGG | 0.596662 | 3.1:+5127092 | None:intergenic |
| AATTGTAGATCGTAAATGGA+AGG | 0.598698 | 3.1:-5127234 | MS.gene56283:CDS |
| AAGAGGTGATGCAGGTCTAG+TGG | 0.600590 | 3.1:+5127520 | None:intergenic |
| ACACTTGGTTCTTCAGTGCG+TGG | 0.611516 | 3.1:-5125863 | MS.gene56283:CDS |
| TGTAGATCGTAAATGGAAGG+AGG | 0.611934 | 3.1:-5127231 | MS.gene56283:CDS |
| AGAGGTTAGCATCACGAACA+AGG | 0.617590 | 3.1:+5128377 | None:intergenic |
| ACTAACCAGGTGTTGAGGGA+GGG | 0.618972 | 3.1:+5127093 | None:intergenic |
| TATATAGTTACGGTGGACCT+GGG | 0.620088 | 3.1:-5125812 | MS.gene56283:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 3.1:+5125795 | None:intergenic |
| AGCTTCACAACCAATACGGA+CGG | 0.629115 | 3.1:-5126969 | MS.gene56283:CDS |
| TGTAGGATTCCTACTATAGG+GGG | 0.629514 | 3.1:-5127547 | MS.gene56283:intron |
| ATTGACATGAAATTTGATGG+CGG | 0.676313 | 3.1:-5125836 | MS.gene56283:CDS |
| AACAAGGTCAGAGTAGAGAG+CGG | 0.693390 | 3.1:+5128393 | None:intergenic |
| GAGATGTTACTTCAACGAAG+AGG | 0.709606 | 3.1:+5127503 | None:intergenic |
| TGGCGGATATATAGTTACGG+TGG | 0.725652 | 3.1:-5125819 | MS.gene56283:CDS |
| TTTGTGAGTTCAGTCTCACG+CGG | 0.743764 | 3.1:+5128433 | None:intergenic |
| GTTGAAGTAACATCTCGTGG+TGG | 0.754811 | 3.1:-5127496 | MS.gene56283:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAAAAATTGTATTTTAT+TGG | - | chr3.1:5125973-5125992 | MS.gene56283:intron | 10.0% |
| !! | AAATTTAAGAAAAAGATTAG+AGG | + | chr3.1:5126765-5126784 | None:intergenic | 15.0% |
| !!! | ATGATTTGTTTCTTTAATTT+AGG | - | chr3.1:5127639-5127658 | MS.gene56283:intron | 15.0% |
| !!! | TCTTTTTCTTAAATTTATGT+AGG | - | chr3.1:5126769-5126788 | MS.gene56283:intron | 15.0% |
| !!! | TTTTATGCACAAAAAAATAT+AGG | - | chr3.1:5126135-5126154 | MS.gene56283:intron | 15.0% |
| !!! | TTTTATTGGATAGTATAATA+TGG | - | chr3.1:5125987-5126006 | MS.gene56283:intron | 15.0% |
| !! | AGGATTTATCTTAATGAATT+AGG | - | chr3.1:5126314-5126333 | MS.gene56283:intron | 20.0% |
| !! | GAAAATCTTGAATTATTGTT+CGG | + | chr3.1:5126180-5126199 | None:intergenic | 20.0% |
| !! | TACACAAAGCTAAAAAAAAA+TGG | + | chr3.1:5127670-5127689 | None:intergenic | 20.0% |
| !! | TATGACAAAAGAAATATGAT+TGG | - | chr3.1:5126213-5126232 | MS.gene56283:intron | 20.0% |
| !!! | AATCATGATTTGTTAAGAAT+GGG | + | chr3.1:5126017-5126036 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAACGTAATTAG+AGG | + | chr3.1:5126977-5126996 | None:intergenic | 20.0% |
| !!! | ATTTTCAAAACGTAATTAGA+GGG | + | chr3.1:5126976-5126995 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTATGTTTTTATG+TGG | - | chr3.1:5127304-5127323 | MS.gene56283:intron | 20.0% |
| !!! | TTTCTTTTTATCTCTTGTTA+CGG | - | chr3.1:5127543-5127562 | MS.gene56283:CDS | 20.0% |
| ! | AAGGGCAAAACATTATTATT+AGG | + | chr3.1:5126452-5126471 | None:intergenic | 25.0% |
| ! | ACAATTGACATGAAATTTGA+TGG | - | chr3.1:5128188-5128207 | MS.gene56283:intron | 25.0% |
| ! | AGAAACAAATCATCTAAGAA+TGG | + | chr3.1:5127632-5127651 | None:intergenic | 25.0% |
| ! | AGGGCAAAACATTATTATTA+GGG | + | chr3.1:5126451-5126470 | None:intergenic | 25.0% |
| ! | ATATACTTTCCATTTATCTG+TGG | - | chr3.1:5128093-5128112 | MS.gene56283:intron | 25.0% |
| ! | ATTTGATTCAGATTGTGAAT+CGG | - | chr3.1:5126040-5126059 | MS.gene56283:intron | 25.0% |
| ! | GAAAACACATAAGAAAGTAA+AGG | + | chr3.1:5126635-5126654 | None:intergenic | 25.0% |
| ! | GCAGAAAAAACACTAAAAAA+TGG | + | chr3.1:5125817-5125836 | None:intergenic | 25.0% |
| !! | AATTAGTAGAGAAGTATACA+AGG | + | chr3.1:5126572-5126591 | None:intergenic | 25.0% |
| !! | ATTAAAACAGCTTTTCAGTT+TGG | - | chr3.1:5126671-5126690 | MS.gene56283:intron | 25.0% |
| !! | TTCTTTTTATCTCTTGTTAC+GGG | - | chr3.1:5127544-5127563 | MS.gene56283:CDS | 25.0% |
| !!! | ATTCTTAGTTTTCGATTTTG+TGG | - | chr3.1:5125839-5125858 | MS.gene56283:CDS | 25.0% |
| !!! | GAATCATGATTTGTTAAGAA+TGG | + | chr3.1:5126018-5126037 | None:intergenic | 25.0% |
| !!! | TGCTTCTTTTATTTTGAAAC+TGG | - | chr3.1:5127588-5127607 | MS.gene56283:intron | 25.0% |
| !!! | TTCTTAGTTTTCGATTTTGT+GGG | - | chr3.1:5125840-5125859 | MS.gene56283:CDS | 25.0% |
| AAAACGTAATTAGAGGGAAA+AGG | + | chr3.1:5126970-5126989 | None:intergenic | 30.0% | |
| AAACCTTTACCACAGATAAA+TGG | + | chr3.1:5128105-5128124 | None:intergenic | 30.0% | |
| AATTGTAGATCGTAAATGGA+AGG | - | chr3.1:5126793-5126812 | MS.gene56283:intron | 30.0% | |
| AGGTAATTGTAGATCGTAAA+TGG | - | chr3.1:5126789-5126808 | MS.gene56283:intron | 30.0% | |
| ATTGACATGAAATTTGATGG+CGG | - | chr3.1:5128191-5128210 | MS.gene56283:intron | 30.0% | |
| CTACTATTGTAAGAAGTTAG+AGG | + | chr3.1:5127201-5127220 | None:intergenic | 30.0% | |
| CTTTGTGTACATCTAATCTA+TGG | - | chr3.1:5127681-5127700 | MS.gene56283:intron | 30.0% | |
| GAGCAATTAGTAGGAAAATT+GGG | - | chr3.1:5128444-5128463 | MS.gene56283:CDS | 30.0% | |
| GGATGTATAGTCAGTATTAT+TGG | + | chr3.1:5127449-5127468 | None:intergenic | 30.0% | |
| TATATCGACCGAAATCAAAT+AGG | - | chr3.1:5128353-5128372 | MS.gene56283:CDS | 30.0% | |
| TGAATCCAGATTCATTAAGA+TGG | + | chr3.1:5126281-5126300 | None:intergenic | 30.0% | |
| TGCTGTTATCTGAATGAATT+AGG | - | chr3.1:5126253-5126272 | MS.gene56283:intron | 30.0% | |
| TTATGTGAAACCATGAATGA+TGG | + | chr3.1:5127470-5127489 | None:intergenic | 30.0% | |
| TTTCCATTTATCTGTGGTAA+AGG | - | chr3.1:5128099-5128118 | MS.gene56283:intron | 30.0% | |
| ! | AATGATCATTTGTGATGGAA+TGG | - | chr3.1:5127276-5127295 | MS.gene56283:intron | 30.0% |
| ! | TAACCACTCCTATTTGATTT+CGG | + | chr3.1:5128364-5128383 | None:intergenic | 30.0% |
| ! | TGATTGGCTACAAAAAGTTT+AGG | - | chr3.1:5126229-5126248 | MS.gene56283:intron | 30.0% |
| !! | AGCTATTAGCTGTTTTCATT+AGG | + | chr3.1:5127931-5127950 | None:intergenic | 30.0% |
| !! | CTATGTTTTTATGTGGTGTT+TGG | - | chr3.1:5127311-5127330 | MS.gene56283:intron | 30.0% |
| !!! | TGAATCGGAAACCTATTTTT+TGG | - | chr3.1:5126055-5126074 | MS.gene56283:intron | 30.0% |
| AACAAGCTGTGGTACAAAAA+GGG | + | chr3.1:5125762-5125781 | None:intergenic | 35.0% | |
| AACAGAGTCCTAATCTATGT+TGG | - | chr3.1:5128063-5128082 | MS.gene56283:intron | 35.0% | |
| AATAGTAGTAGCAGAGATAG+GGG | - | chr3.1:5127213-5127232 | MS.gene56283:CDS | 35.0% | |
| ACAATAGTAGTAGCAGAGAT+AGG | - | chr3.1:5127211-5127230 | MS.gene56283:CDS | 35.0% | |
| ACATAGATTAGGACTCTGTT+TGG | + | chr3.1:5128063-5128082 | None:intergenic | 35.0% | |
| AGGATCCATCTTAATGAATC+TGG | - | chr3.1:5126273-5126292 | MS.gene56283:intron | 35.0% | |
| AGGATTCATCTTCATGAATC+TGG | - | chr3.1:5126334-5126353 | MS.gene56283:intron | 35.0% | |
| ATCAATGATTCACCTGTTCA+GGG | - | chr3.1:5127088-5127107 | MS.gene56283:intron | 35.0% | |
| ATGTAACCTGTTAGCTCATT+CGG | + | chr3.1:5127381-5127400 | None:intergenic | 35.0% | |
| ATTTACTGCCATAAGCACAT+AGG | - | chr3.1:5127814-5127833 | MS.gene56283:intron | 35.0% | |
| CAATAGCTTCACAACCAATA+CGG | - | chr3.1:5127054-5127073 | MS.gene56283:intron | 35.0% | |
| CAATAGTAGTAGCAGAGATA+GGG | - | chr3.1:5127212-5127231 | MS.gene56283:CDS | 35.0% | |
| CATGTATGTTTCATGAGACA+AGG | + | chr3.1:5126609-5126628 | None:intergenic | 35.0% | |
| CATTGCTTGAAACATGATAC+AGG | + | chr3.1:5128262-5128281 | None:intergenic | 35.0% | |
| CGATTCACAGTCCAAAAAAT+AGG | + | chr3.1:5126069-5126088 | None:intergenic | 35.0% | |
| GAATCCTACACAAACACAAA+GGG | + | chr3.1:5126470-5126489 | None:intergenic | 35.0% | |
| GACTATACATCCATCATTCA+TGG | - | chr3.1:5127457-5127476 | MS.gene56283:intron | 35.0% | |
| GGAGCAATTAGTAGGAAAAT+TGG | - | chr3.1:5128443-5128462 | MS.gene56283:CDS | 35.0% | |
| GGATAGAGGAAATTATTGAG+TGG | + | chr3.1:5127010-5127029 | None:intergenic | 35.0% | |
| GGATCAATGATCATTTGTGA+TGG | - | chr3.1:5127271-5127290 | MS.gene56283:intron | 35.0% | |
| GTGATAAAGCAACGATAGAT+AGG | + | chr3.1:5126882-5126901 | None:intergenic | 35.0% | |
| GTTTCAAGCAATGCATCTAA+GGG | - | chr3.1:5128269-5128288 | MS.gene56283:intron | 35.0% | |
| TAGGTATCTTGGAGAGTTTA+AGG | + | chr3.1:5127912-5127931 | None:intergenic | 35.0% | |
| TATCAATGATTCACCTGTTC+AGG | - | chr3.1:5127087-5127106 | MS.gene56283:intron | 35.0% | |
| TCCACTTACCAACATAGATT+AGG | + | chr3.1:5128074-5128093 | None:intergenic | 35.0% | |
| TCTAAGGGTTCTTCTATTGA+AGG | - | chr3.1:5128284-5128303 | MS.gene56283:intron | 35.0% | |
| TGTGTAGGATTCCTACTATA+GGG | - | chr3.1:5126478-5126497 | MS.gene56283:intron | 35.0% | |
| TGTTTCAAGCAATGCATCTA+AGG | - | chr3.1:5128268-5128287 | MS.gene56283:intron | 35.0% | |
| TTGTGTAGGATTCCTACTAT+AGG | - | chr3.1:5126477-5126496 | MS.gene56283:intron | 35.0% | |
| TTTACTGCCATAAGCACATA+GGG | - | chr3.1:5127815-5127834 | MS.gene56283:intron | 35.0% | |
| ! | AGTTTTCGATTTTGTGGGTT+AGG | - | chr3.1:5125845-5125864 | MS.gene56283:CDS | 35.0% |
| ! | ATCATTTGTGATGGAATGGT+TGG | - | chr3.1:5127280-5127299 | MS.gene56283:intron | 35.0% |
| ! | ATCCAAAGCTTTATCACACT+AGG | + | chr3.1:5127778-5127797 | None:intergenic | 35.0% |
| ! | ATTGAAGTTTTTCCCAGAAG+AGG | + | chr3.1:5125671-5125690 | None:intergenic | 35.0% |
| ! | CAATCTTTTCATGATTCGCT+TGG | - | chr3.1:5125687-5125706 | MS.gene56283:intron | 35.0% |
| ! | TCCTAATCTATGTTGGTAAG+TGG | - | chr3.1:5128070-5128089 | MS.gene56283:intron | 35.0% |
| ! | TTTTTGCTGAGAATTATGCC+AGG | - | chr3.1:5128393-5128412 | MS.gene56283:CDS | 35.0% |
| !! | GCTGTTTTCATTAGGTATCT+TGG | + | chr3.1:5127923-5127942 | None:intergenic | 35.0% |
| !! | TCGGGTTATAGTCTTATTGT+CGG | + | chr3.1:5127362-5127381 | None:intergenic | 35.0% |
| !! | TGATGGCGGATATATAGTTA+CGG | - | chr3.1:5128205-5128224 | MS.gene56283:intron | 35.0% |
| AGGTAGTATCTTCACTAACC+AGG | + | chr3.1:5126950-5126969 | None:intergenic | 40.0% | |
| ATATATAGTTACGGTGGACC+TGG | - | chr3.1:5128214-5128233 | MS.gene56283:intron | 40.0% | |
| CACCTAGTGTGATAAAGCTT+TGG | - | chr3.1:5127773-5127792 | MS.gene56283:intron | 40.0% | |
| CATAACAAGCGCATCATTCA+TGG | - | chr3.1:5126847-5126866 | MS.gene56283:intron | 40.0% | |
| GAACAAGCTGTGGTACAAAA+AGG | + | chr3.1:5125763-5125782 | None:intergenic | 40.0% | |
| GAATGAGCTAACAGGTTACA+TGG | - | chr3.1:5127380-5127399 | MS.gene56283:intron | 40.0% | |
| GGAATCCTACACAAACACAA+AGG | + | chr3.1:5126471-5126490 | None:intergenic | 40.0% | |
| GGATTCATGTCTTGTGAAAC+AGG | - | chr3.1:5126294-5126313 | MS.gene56283:intron | 40.0% | |
| GTGTAGGATTCCTACTATAG+GGG | - | chr3.1:5126479-5126498 | MS.gene56283:intron | 40.0% | |
| TATAACCCGAATGAGCTAAC+AGG | - | chr3.1:5127372-5127391 | MS.gene56283:intron | 40.0% | |
| TATATAGTTACGGTGGACCT+GGG | - | chr3.1:5128215-5128234 | MS.gene56283:intron | 40.0% | |
| TGATCCATGACAAATGTCAG+AGG | + | chr3.1:5127257-5127276 | None:intergenic | 40.0% | |
| TGTAACCTGTTAGCTCATTC+GGG | + | chr3.1:5127380-5127399 | None:intergenic | 40.0% | |
| TGTAGATCGTAAATGGAAGG+AGG | - | chr3.1:5126796-5126815 | MS.gene56283:intron | 40.0% | |
| TGTAGGATTCCTACTATAGG+GGG | - | chr3.1:5126480-5126499 | MS.gene56283:intron | 40.0% | |
| TGTTCCTCTGACATTTGTCA+TGG | - | chr3.1:5127250-5127269 | MS.gene56283:intron | 40.0% | |
| TTACTGCCATAAGCACATAG+GGG | - | chr3.1:5127816-5127835 | MS.gene56283:intron | 40.0% | |
| TTCCTACTAATTGCTCCTTG+TGG | + | chr3.1:5128440-5128459 | None:intergenic | 40.0% | |
| TTCGTTGAAGTAACATCTCG+TGG | - | chr3.1:5126528-5126547 | MS.gene56283:intron | 40.0% | |
| TTGGGAGAGCTTATGGAAAT+TGG | - | chr3.1:5127844-5127863 | MS.gene56283:intron | 40.0% | |
| TTTGCCCTTTGTGTTTGTGT+AGG | - | chr3.1:5126463-5126482 | MS.gene56283:intron | 40.0% | |
| ! | AAGCTTTATCACACTAGGTG+AGG | + | chr3.1:5127773-5127792 | None:intergenic | 40.0% |
| ! | ATCGCTGTGTGTAGCATTTT+TGG | + | chr3.1:5126368-5126387 | None:intergenic | 40.0% |
| ! | ATCTCGTGGTGGTATTGAAA+AGG | - | chr3.1:5126542-5126561 | MS.gene56283:intron | 40.0% |
| ! | CATGAATGATGCGCTTGTTA+TGG | + | chr3.1:5126849-5126868 | None:intergenic | 40.0% |
| ! | GAGATGTTACTTCAACGAAG+AGG | + | chr3.1:5126527-5126546 | None:intergenic | 40.0% |
| !! | ATGCGCTTGTTATGGTATCT+CGG | + | chr3.1:5126841-5126860 | None:intergenic | 40.0% |
| !! | CGTATTGGTTGTGAAGCTAT+TGG | + | chr3.1:5127056-5127075 | None:intergenic | 40.0% |
| !! | TTCATTGACTTACCCTGAAC+AGG | + | chr3.1:5127103-5127122 | None:intergenic | 40.0% |
| !!! | GCGGATTTTGGTTTTGATTC+TGG | + | chr3.1:5125578-5125597 | None:intergenic | 40.0% |
| AACAAGGTCAGAGTAGAGAG+CGG | + | chr3.1:5125637-5125656 | None:intergenic | 45.0% | |
| AACAGTCCCCTATGTGCTTA+TGG | + | chr3.1:5127825-5127844 | None:intergenic | 45.0% | |
| AAGCACATAGGGGACTGTTT+GGG | - | chr3.1:5127826-5127845 | MS.gene56283:intron | 45.0% | |
| AGAGGTTAGCATCACGAACA+AGG | + | chr3.1:5125653-5125672 | None:intergenic | 45.0% | |
| AGCTTCACAACCAATACGGA+CGG | - | chr3.1:5127058-5127077 | MS.gene56283:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | + | chr3.1:5128149-5128168 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+TGG | - | chr3.1:5128149-5128168 | MS.gene56283:intron | 45.0% | |
| CCAGCTACTTAGATCAAACG+AGG | + | chr3.1:5127750-5127769 | None:intergenic | 45.0% | |
| CCTCGTTTGATCTAAGTAGC+TGG | - | chr3.1:5127747-5127766 | MS.gene56283:intron | 45.0% | |
| CGACCGAAATCAAATAGGAG+TGG | - | chr3.1:5128358-5128377 | MS.gene56283:CDS | 45.0% | |
| CTAGATCGATGAACAAGCTG+TGG | + | chr3.1:5125773-5125792 | None:intergenic | 45.0% | |
| GTAGGAAAATTGGGTTTGCG+TGG | - | chr3.1:5128453-5128472 | MS.gene56283:CDS | 45.0% | |
| GTTGAAGTAACATCTCGTGG+TGG | - | chr3.1:5126531-5126550 | MS.gene56283:intron | 45.0% | |
| TAAGCACATAGGGGACTGTT+TGG | - | chr3.1:5127825-5127844 | MS.gene56283:intron | 45.0% | |
| TCGTGATGCTAACCTCTTCT+GGG | - | chr3.1:5125656-5125675 | MS.gene56283:intron | 45.0% | |
| TTCGTGATGCTAACCTCTTC+TGG | - | chr3.1:5125655-5125674 | MS.gene56283:intron | 45.0% | |
| TTTGTGAGTTCAGTCTCACG+CGG | + | chr3.1:5125597-5125616 | None:intergenic | 45.0% | |
| ! | ACGTTTCCACTCAAAGCATC+TGG | + | chr3.1:5127031-5127050 | None:intergenic | 45.0% |
| ! | CACTCAAAGCATCTGGATAG+AGG | + | chr3.1:5127024-5127043 | None:intergenic | 45.0% |
| ! | CTCTATCCAGATGCTTTGAG+TGG | - | chr3.1:5127022-5127041 | MS.gene56283:intron | 45.0% |
| ! | TCTTCACTAACCAGGTGTTG+AGG | + | chr3.1:5126942-5126961 | None:intergenic | 45.0% |
| ! | TGGCGGATATATAGTTACGG+TGG | - | chr3.1:5128208-5128227 | MS.gene56283:intron | 45.0% |
| !! | CTTCACTAACCAGGTGTTGA+GGG | + | chr3.1:5126941-5126960 | None:intergenic | 45.0% |
| AAGAGGTGATGCAGGTCTAG+TGG | + | chr3.1:5126510-5126529 | None:intergenic | 50.0% | |
| AGTGGCTTACCCCCTATAGT+AGG | + | chr3.1:5126492-5126511 | None:intergenic | 50.0% | |
| CCTTGTGGCCTGCAAAATGA+GGG | + | chr3.1:5128425-5128444 | None:intergenic | 50.0% | |
| CTTCAACGAAGAGGTGATGC+AGG | + | chr3.1:5126518-5126537 | None:intergenic | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | + | chr3.1:5128235-5128254 | None:intergenic | 50.0% | |
| GAAGAACCAAGTGTCTGTGC+TGG | + | chr3.1:5128158-5128177 | None:intergenic | 50.0% | |
| GGAAAATTGGGTTTGCGTGG+AGG | - | chr3.1:5128456-5128475 | MS.gene56283:CDS | 50.0% | |
| GGACTGTTTGGGAGAGCTTA+TGG | - | chr3.1:5127837-5127856 | MS.gene56283:intron | 50.0% | |
| GGCCACAAGGAGCAATTAGT+AGG | - | chr3.1:5128435-5128454 | MS.gene56283:CDS | 50.0% | |
| TCCTTGTGGCCTGCAAAATG+AGG | + | chr3.1:5128426-5128445 | None:intergenic | 50.0% | |
| ! | ACACTTGGTTCTTCAGTGCG+TGG | - | chr3.1:5128164-5128183 | MS.gene56283:intron | 50.0% |
| ! | GCAAAATGAGGGCTTTAGCC+TGG | + | chr3.1:5128414-5128433 | None:intergenic | 50.0% |
| ! | GGCTAAAGCCCTCATTTTGC+AGG | - | chr3.1:5128414-5128433 | MS.gene56283:CDS | 50.0% |
| ! | GTTCAGTCTCACGCGGATTT+TGG | + | chr3.1:5125590-5125609 | None:intergenic | 50.0% |
| !! | ACTAACCAGGTGTTGAGGGA+GGG | + | chr3.1:5126937-5126956 | None:intergenic | 50.0% |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | chr3.1:5128233-5128252 | MS.gene56283:intron | 50.0% |
| AGGTCAGAGTAGAGAGCGGT+TGG | + | chr3.1:5125633-5125652 | None:intergenic | 55.0% | |
| GATAGCAGCACCGTCCGTAT+TGG | + | chr3.1:5127071-5127090 | None:intergenic | 55.0% | |
| TCAGAGTAGAGAGCGGTTGG+AGG | + | chr3.1:5125630-5125649 | None:intergenic | 55.0% | |
| ! | CCCTCATTTTGCAGGCCACA+AGG | - | chr3.1:5128422-5128441 | MS.gene56283:CDS | 55.0% |
| !! | CACTAACCAGGTGTTGAGGG+AGG | + | chr3.1:5126938-5126957 | None:intergenic | 55.0% |
| CAAGTCCCTCCCTCAACACC+TGG | - | chr3.1:5126929-5126948 | MS.gene56283:intron | 60.0% | |
| GAGCGGTTGGAGGAGGACAA+AGG | + | chr3.1:5125620-5125639 | None:intergenic | 60.0% | |
| GAGTAGAGAGCGGTTGGAGG+AGG | + | chr3.1:5125627-5125646 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 5125564 | 5128485 | 5125564 | ID=MS.gene56283 |
| chr3.1 | mRNA | 5125564 | 5128485 | 5125564 | ID=MS.gene56283.t1;Parent=MS.gene56283 |
| chr3.1 | exon | 5128328 | 5128485 | 5128328 | ID=MS.gene56283.t1.exon1;Parent=MS.gene56283.t1 |
| chr3.1 | CDS | 5128328 | 5128485 | 5128328 | ID=cds.MS.gene56283.t1;Parent=MS.gene56283.t1 |
| chr3.1 | exon | 5127486 | 5127564 | 5127486 | ID=MS.gene56283.t1.exon2;Parent=MS.gene56283.t1 |
| chr3.1 | CDS | 5127486 | 5127564 | 5127486 | ID=cds.MS.gene56283.t1;Parent=MS.gene56283.t1 |
| chr3.1 | exon | 5127099 | 5127258 | 5127099 | ID=MS.gene56283.t1.exon3;Parent=MS.gene56283.t1 |
| chr3.1 | CDS | 5127099 | 5127258 | 5127099 | ID=cds.MS.gene56283.t1;Parent=MS.gene56283.t1 |
| chr3.1 | exon | 5126940 | 5127017 | 5126940 | ID=MS.gene56283.t1.exon4;Parent=MS.gene56283.t1 |
| chr3.1 | CDS | 5126940 | 5127017 | 5126940 | ID=cds.MS.gene56283.t1;Parent=MS.gene56283.t1 |
| chr3.1 | exon | 5125744 | 5125908 | 5125744 | ID=MS.gene56283.t1.exon5;Parent=MS.gene56283.t1 |
| chr3.1 | CDS | 5125744 | 5125908 | 5125744 | ID=cds.MS.gene56283.t1;Parent=MS.gene56283.t1 |
| chr3.1 | exon | 5125564 | 5125613 | 5125564 | ID=MS.gene56283.t1.exon6;Parent=MS.gene56283.t1 |
| chr3.1 | CDS | 5125564 | 5125613 | 5125564 | ID=cds.MS.gene56283.t1;Parent=MS.gene56283.t1 |
| Gene Sequence |
| Protein sequence |
