AlfalfaGEDB | MS.gene56314

M. sativa cultivar XinJiangDaYe / MS.gene56314

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56314.t1	KEH31558.1	61.6	279	11	1	1	183	142	420	3.60E-77	297.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56314.t1	Q6LA43	41.5	258	75	5	2	183	111	368	1.8e-40	167.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56314.t1	A0A072UQC7	61.6	279	11	1	1	183	103	381	2.6e-77	297.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene56314.t1	TF	GARP-G2-like

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56314.t1	MTR_4g098870	82.394	142	24	1	42	183	241	381	4.34e-76	238
MS.gene56314.t1	MTR_4g098870	98.361	61	1	0	1	61	103	163	7.09e-33	123
MS.gene56314.t1	MTR_4g098870	82.394	142	24	1	42	183	241	381	4.50e-76	238
MS.gene56314.t1	MTR_4g098870	98.361	61	1	0	1	61	103	163	5.92e-33	123
MS.gene56314.t1	MTR_4g098870	82.394	142	24	1	42	183	261	401	6.27e-76	238
MS.gene56314.t1	MTR_4g098870	98.361	61	1	0	1	61	123	183	7.70e-33	123
MS.gene56314.t1	MTR_4g098870	82.394	142	24	1	42	183	261	401	7.03e-76	238
MS.gene56314.t1	MTR_4g098870	98.361	61	1	0	1	61	123	183	6.65e-33	123
MS.gene56314.t1	MTR_4g098870	82.394	142	24	1	42	183	280	420	1.48e-75	237
MS.gene56314.t1	MTR_4g098870	98.361	61	1	0	1	61	142	202	8.33e-33	123

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56314.t1	AT4G18020	69.231	78	21	2	107	183	293	368	1.11e-29	114
MS.gene56314.t1	AT4G18020	63.636	77	26	1	2	78	111	185	1.70e-24	99.4
MS.gene56314.t1	AT4G18020	69.231	78	21	2	107	183	293	368	1.11e-29	114
MS.gene56314.t1	AT4G18020	63.636	77	26	1	2	78	111	185	1.70e-24	99.4
MS.gene56314.t1	AT4G18020	69.231	78	21	2	107	183	293	368	1.11e-29	114
MS.gene56314.t1	AT4G18020	63.636	77	26	1	2	78	111	185	1.70e-24	99.4
MS.gene56314.t1	AT4G18020	69.231	78	21	2	107	183	293	368	1.11e-29	114
MS.gene56314.t1	AT4G18020	63.636	77	26	1	2	78	111	185	1.70e-24	99.4
MS.gene56314.t1	AT4G18020	69.231	78	21	2	107	183	293	368	1.11e-29	114
MS.gene56314.t1	AT4G18020	63.636	77	26	1	2	78	111	185	1.70e-24	99.4

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

Find 33 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATATTGGATCTAATGAAAG+TGG	0.519493	3.1:+5941990	MS.gene56314:CDS
AATATTTCTGAGCTTGTCCT+CGG	0.546887	3.1:-5941374	None:intergenic
AATGTGAGATAAAAGCTAAT+CGG	0.462021	3.1:+5941717	MS.gene56314:CDS
ACAACATCTGCAAATAAAGT+AGG	0.528162	3.1:+5941680	MS.gene56314:CDS
ACCACAATTACCAAATGTGA+AGG	0.551748	3.1:+5941634	MS.gene56314:CDS
ACCTTCACATTTGGTAATTG+TGG	0.453921	3.1:-5941635	None:intergenic
AGGACAAGCTCAGAAATATT+TGG	0.362029	3.1:+5941377	MS.gene56314:CDS
ATCGGAAATGGCTAAATACA+AGG	0.595293	3.1:+5942240	MS.gene56314:CDS
ATCTGTTTGAATCTGCAAGA+TGG	0.516940	3.1:-5941570	None:intergenic
ATTAGATCCAATATTCGAGA+AGG	0.541398	3.1:-5941982	None:intergenic

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAACATCTGCAAATAAAGT+AGG	+	chr3.1:5941680-5941699	MS.gene56314:CDS	30.0%
AGGTAATGCATACTAACATA+AGG	+	chr3.1:5942149-5942168	MS.gene56314:intron	30.0%
ATTAGATCCAATATTCGAGA+AGG	-	chr3.1:5941985-5942004	None:intergenic	30.0%
TTATGTGGTTTAACTCAAAC+AGG	+	chr3.1:5941484-5941503	MS.gene56314:intron	30.0%
AAACAAAGCAGAGAGTAAAG+AGG	-	chr3.1:5941309-5941328	None:intergenic	35.0%
ACCACAATTACCAAATGTGA+AGG	+	chr3.1:5941634-5941653	MS.gene56314:CDS	35.0%
AGGACAAGCTCAGAAATATT+TGG	+	chr3.1:5941377-5941396	MS.gene56314:CDS	35.0%
ATCGGAAATGGCTAAATACA+AGG	+	chr3.1:5942240-5942259	MS.gene56314:CDS	35.0%
ATCTGTTTGAATCTGCAAGA+TGG	-	chr3.1:5941573-5941592	None:intergenic	35.0%
ATTGGATCTAATGAAAGTGG+AGG	+	chr3.1:5941993-5942012	MS.gene56314:CDS	35.0%

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	5941074	5942265	5941074	ID=MS.gene56314
chr3.1	mRNA	5941074	5942265	5941074	ID=MS.gene56314.t1;Parent=MS.gene56314
chr3.1	exon	5941074	5941091	5941074	ID=MS.gene56314.t1.exon1;Parent=MS.gene56314.t1
chr3.1	CDS	5941074	5941091	5941074	ID=cds.MS.gene56314.t1;Parent=MS.gene56314.t1
chr3.1	exon	5941340	5941417	5941340	ID=MS.gene56314.t1.exon2;Parent=MS.gene56314.t1
chr3.1	CDS	5941340	5941417	5941340	ID=cds.MS.gene56314.t1;Parent=MS.gene56314.t1
chr3.1	exon	5941506	5941751	5941506	ID=MS.gene56314.t1.exon3;Parent=MS.gene56314.t1
chr3.1	CDS	5941506	5941751	5941506	ID=cds.MS.gene56314.t1;Parent=MS.gene56314.t1
chr3.1	exon	5941910	5942050	5941910	ID=MS.gene56314.t1.exon4;Parent=MS.gene56314.t1
chr3.1	CDS	5941910	5942050	5941910	ID=cds.MS.gene56314.t1;Parent=MS.gene56314.t1
chr3.1	exon	5942197	5942265	5942197	ID=MS.gene56314.t1.exon5;Parent=MS.gene56314.t1
chr3.1	CDS	5942197	5942265	5942197	ID=cds.MS.gene56314.t1;Parent=MS.gene56314.t1

Gene Sequence

>MS.gene56314

ATGATGAAGTGCATAGAAGTAAGATTTTGGTTAAATTCTTTGAGCTAAATGCAATTTCCGTATATCGTTATTTCATGCTTTGGATTCTTTCCTATAGACCATATCCTTTTAAAATTAGTGGGCTAATCAAACTAGTTTTATTTGGTTTTTCAGTTCTACTTACTTAAATAGGATCTTTAACTTAATAGACAATGTGTATTTTCAATCCATTTTAATTGTTGATGCGCGCACACCTCTTTACTCTCTGCTTTGTTTTCTTTTTTAAGCTTGGAGCAGTGGAGTTTCTCAGCAAACCACTCTCCGAGGACAAGCTCAGAAATATTTGGCAGCATGTGGTTCACAAGGTGTGTAAATAATATTCGTGATATTCCACATGCATTTACTCTTAATATATGCTGAGTAAAATATTCTTATGTGGTTTAACTCAAACAGGCATTCAATGCTGGTGTAAGTGCGCTGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGCCTCCATCTTGCAGATTCAAACAGATCTAAGTGTTGCTGACACTTCTAAGTGTGAGAGTGTTGTTTCACCACAATTACCAAATGTGAAGGTTCTAAACAATAGTGAAAGTAATACAACATCTGCAAATAAAGTAGGTATTCGCAGTCATAAATGTGAGATAAAAGCTAATCGGAAGAAGATGAAAGTAAGTTGTTTTTCCATTCATTCTTCTCATAATGTTCTTGTTCCGTTATTTCACAATGTTCATTGTTTATCCATGTTGTATAAGGTTATATTCATTTTATGTATGAGTGATCTACTGAACCTGATTTTCTTAATACAGTTTTGGTACTTTGGTCTCAGGTAGACTGGACGCCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTAATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGGTTATAATCTACCTTCCCACGGTTTCCAAAAACTATTTCAATACCTCATTCAAAACTGTAATTAATGATAAATTGATATTATATTCATATATCTTCATAGGTAATGCATACTAACATAAGGTCTTTTATTGTTTAAATTCAACCAGAAATATAGAATGCATAAGAGACATATCTTACCGAAGCAGGATGATCGGAAATGGCTAAATACAAGGTAG

Protein sequence

>MS.gene56314.t1

MMKCIELGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGVSALSESLKPVKESVASILQIQTDLSVADTSKCESVVSPQLPNVKVLNNSESNTTSANKVGIRSHKCEIKANRKKMKVDWTPELHKKFVKAVEQLGINHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKQDDRKWLNTR