AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56333

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56333.t1 MTR_6g051425 30.325 277 176 5 50 313 19 291 3.26e-35 137
MS.gene56333.t1 MTR_0856s0010 44.654 159 85 2 16 173 4 160 1.47e-34 129
MS.gene56333.t1 MTR_4g035820 29.831 295 183 12 9 288 39 324 1.06e-22 103
MS.gene56333.t1 MTR_0558s0020 26.000 250 161 5 52 277 40 289 6.97e-21 94.4
MS.gene56333.t1 MTR_1g070355 28.936 235 152 7 54 278 80 309 1.61e-20 96.7
MS.gene56333.t1 MTR_7g446060 51.220 82 40 0 130 211 7 88 6.25e-20 87.0
MS.gene56333.t1 MTR_7g446520 28.151 238 154 5 52 286 92 315 2.07e-18 87.8
MS.gene56333.t1 MTR_6g022070 29.655 145 98 2 338 482 1 141 8.90e-17 82.8
MS.gene56333.t1 MTR_3g450850 25.904 332 219 11 8 320 9 332 1.24e-16 82.8
MS.gene56333.t1 MTR_7g446480 31.395 172 117 1 122 292 143 314 1.96e-16 81.6
MS.gene56333.t1 MTR_8g446020 24.891 229 151 4 52 277 39 249 3.17e-16 79.7
MS.gene56333.t1 MTR_1g008290 32.331 133 88 1 108 240 14 144 4.93e-16 76.3
MS.gene56333.t1 MTR_7g446510 30.814 172 118 1 122 292 158 329 6.72e-16 80.1
MS.gene56333.t1 MTR_7g115320 61.111 54 18 1 137 190 9 59 7.94e-15 70.9
MS.gene56333.t1 MTR_3g012160 41.975 81 46 1 193 273 14 93 1.41e-13 67.4
MS.gene56333.t1 MTR_1g083640 24.123 228 149 5 52 255 55 282 1.97e-13 72.0
MS.gene56333.t1 MTR_1g019850 31.579 133 80 4 48 175 70 196 2.13e-13 70.9
MS.gene56333.t1 MTR_1g013060 22.275 211 153 4 44 244 20 229 2.45e-12 67.8
MS.gene56333.t1 MTR_5g076070 23.506 251 179 7 31 272 36 282 4.01e-12 68.2
MS.gene56333.t1 MTR_5g023310 26.923 156 47 2 179 334 16 104 6.40e-12 63.2
MS.gene56333.t1 MTR_6g090505 26.163 172 124 2 109 277 53 224 8.37e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56333.t1 AT4G15090 31.967 732 461 14 48 771 51 753 2.15e-120 382
MS.gene56333.t1 AT4G15090 31.967 732 461 14 48 771 51 753 2.15e-120 382
MS.gene56333.t1 AT4G15090 31.967 732 461 14 48 771 51 753 2.15e-120 382
MS.gene56333.t1 AT4G15090 31.967 732 461 14 48 771 51 753 2.15e-120 382
MS.gene56333.t1 AT4G15090 31.967 732 461 14 48 771 51 753 2.15e-120 382
MS.gene56333.t1 AT4G38180 35.511 597 364 10 48 631 73 661 1.61e-115 368
MS.gene56333.t1 AT3G22170 31.644 651 386 11 18 643 35 651 1.08e-107 349
MS.gene56333.t1 AT3G22170 31.644 651 386 11 18 643 35 651 1.08e-107 349
MS.gene56333.t1 AT1G76320 32.027 587 375 9 52 633 1 568 6.73e-102 329
MS.gene56333.t1 AT1G76320 32.027 587 375 9 52 633 1 568 1.68e-101 330
MS.gene56333.t1 AT1G76320 32.027 587 375 9 52 633 1 568 1.69e-101 330
MS.gene56333.t1 AT1G76320 32.027 587 375 9 52 633 1 568 1.69e-101 330
MS.gene56333.t1 AT1G52520 32.513 569 363 11 47 607 84 639 1.89e-101 328
MS.gene56333.t1 AT2G27110 31.967 610 362 14 48 645 49 617 2.64e-93 311
MS.gene56333.t1 AT2G27110 31.967 610 362 14 48 645 49 617 2.64e-93 311
MS.gene56333.t1 AT1G80010 31.981 616 381 13 14 610 69 665 7.02e-90 298
MS.gene56333.t1 AT3G06250 33.511 564 321 15 48 606 190 704 4.90e-89 297
MS.gene56333.t1 AT3G06250 33.511 564 321 15 48 606 190 704 4.90e-89 297
MS.gene56333.t1 AT3G06250 33.511 564 321 15 48 606 190 704 4.90e-89 297
MS.gene56333.t1 AT2G27110 34.728 478 289 9 172 645 14 472 1.20e-87 292
MS.gene56333.t1 AT5G18960 31.500 600 345 16 36 622 199 745 1.84e-81 277
MS.gene56333.t1 AT5G18960 31.500 600 345 16 36 622 199 745 1.84e-81 277
MS.gene56333.t1 AT2G32250 33.860 443 272 6 224 658 135 564 1.26e-79 271
MS.gene56333.t1 AT2G32250 33.860 443 272 6 224 658 176 605 1.26e-79 271
MS.gene56333.t1 AT2G32250 33.860 443 272 6 224 658 135 564 1.46e-79 271
MS.gene56333.t1 AT2G32250 33.860 443 272 6 224 658 176 605 2.25e-79 272
MS.gene56333.t1 AT2G32250 33.860 443 272 6 224 658 176 605 2.25e-79 272
MS.gene56333.t1 AT2G32250 33.860 443 272 6 224 658 176 605 2.25e-79 272
MS.gene56333.t1 AT2G32250 33.860 443 272 6 224 658 176 605 2.58e-79 271
MS.gene56333.t1 AT2G32250 33.860 443 272 6 224 658 176 605 2.58e-79 271
MS.gene56333.t1 AT4G19990 29.538 606 357 12 51 632 24 583 5.41e-76 261
MS.gene56333.t1 AT4G19990 29.538 606 357 12 51 632 24 583 5.41e-76 261
MS.gene56333.t1 AT4G19990 29.538 606 357 12 51 632 38 597 5.99e-76 261
MS.gene56333.t1 AT4G19990 29.538 606 357 12 51 632 24 583 8.81e-76 261
MS.gene56333.t1 AT4G19990 29.538 606 357 12 51 632 24 583 1.18e-75 261
MS.gene56333.t1 AT4G19990 29.538 606 357 12 51 632 24 583 1.18e-75 261
MS.gene56333.t1 AT4G38170 33.763 388 246 4 221 606 21 399 3.62e-74 251
MS.gene56333.t1 AT4G19990 30.241 539 322 10 104 632 32 526 5.50e-72 249
MS.gene56333.t1 AT1G10240 26.433 628 413 18 1 603 1 604 5.10e-62 221
MS.gene56333.t1 AT1G10240 26.433 628 413 18 1 603 1 604 5.10e-62 221
MS.gene56333.t1 AT5G28530 28.426 591 365 15 46 603 53 618 1.38e-61 220
MS.gene56333.t1 AT5G28530 27.919 591 364 14 46 603 53 614 1.17e-60 218
MS.gene56333.t1 AT5G28530 27.919 591 364 14 46 603 53 614 1.17e-60 218
MS.gene56333.t1 AT5G28530 24.742 582 335 17 46 603 53 555 1.19e-38 153
MS.gene56333.t1 AT5G28530 24.227 582 334 16 46 603 53 551 6.95e-38 150

Find 156 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTTAAAACATGATTTC+TGG 0.164544 3.1:+6394016 MS.gene56333:CDS
CGTGTTGACGTTTGGGATTC+CGG 0.195804 3.1:+6392821 MS.gene56333:CDS
TCTTTCCCGCTCTTCGAAAA+TGG 0.249066 3.1:-6393983 None:intergenic
GATCGCAAACCCTTGTTTCA+TGG 0.299904 3.1:-6392948 None:intergenic
CCTCTTTGTTGTTGACATTC+CGG 0.306720 3.1:-6394040 None:intergenic
AAGACCGCAACCTAGTAAAA+TGG 0.321194 3.1:-6393629 None:intergenic
GTGTTGACGTTTGGGATTCC+GGG 0.332951 3.1:+6392822 MS.gene56333:CDS
TGCTGCTCGTGTTGACGTTT+GGG 0.334479 3.1:+6392814 MS.gene56333:CDS
CGTCATCTAGCTCTCCATTA+GGG 0.344995 3.1:-6392790 None:intergenic
GGCTATGCAAAATGCAATTC+AGG 0.355784 3.1:+6393753 MS.gene56333:CDS
TTGCTTTAAAGAAGGGTCTA+TGG 0.361166 3.1:+6393119 MS.gene56333:CDS
GTACACCCATGAAAAGTATA+TGG 0.361947 3.1:+6394251 MS.gene56333:CDS
GTGCTGCTCGTGTTGACGTT+TGG 0.373475 3.1:+6392813 MS.gene56333:CDS
ACTAAATCACGGTTGTTTGC+TGG 0.375082 3.1:+6393187 MS.gene56333:CDS
CATCCTTTATTAGCCCCTAA+TGG 0.375098 3.1:+6392776 MS.gene56333:CDS
CCGTCATCTAGCTCTCCATT+AGG 0.377369 3.1:-6392791 None:intergenic
ATGTCGTTACTTGCATCAAT+GGG 0.378291 3.1:+6395156 MS.gene56333:CDS
AGTATTGTGTTGATTTCAAC+GGG 0.389824 3.1:+6394397 MS.gene56333:CDS
TATGTCGTTACTTGCATCAA+TGG 0.393059 3.1:+6395155 MS.gene56333:CDS
CACCACCTATGCCTAGTATT+AGG 0.393202 3.1:-6393784 None:intergenic
GGATTAAGAATTGGTTGATC+AGG 0.405554 3.1:-6394819 None:intergenic
CTAGGCATAGGTGGTGTCTA+TGG 0.405638 3.1:+6393791 MS.gene56333:CDS
ATGTCATTTGCCCCGTTTGT+TGG 0.407466 3.1:+6393586 MS.gene56333:CDS
TTATTTAAAACATGATTTCT+GGG 0.414268 3.1:+6394017 MS.gene56333:CDS
AAAGGATGATCGATCAATAT+AGG 0.415391 3.1:-6392761 None:intergenic
ACATTACTTCCTATGTCTGA+TGG 0.423977 3.1:+6395072 MS.gene56333:CDS
ACTTCCACGACCGAAACATT+TGG 0.427839 3.1:-6394939 None:intergenic
GATGATTGACACCAACAAAC+GGG 0.432575 3.1:-6393597 None:intergenic
TTGGTGGTATGTTTGATTCA+TGG 0.433399 3.1:-6393045 None:intergenic
GCAAACAACCGTGATTTAGT+TGG 0.439208 3.1:-6393184 None:intergenic
GTCATATTTGTTTGTCAAGT+AGG 0.443684 3.1:-6393563 None:intergenic
ATGGTTTGGGTGAAAATGAT+TGG 0.445440 3.1:+6393953 MS.gene56333:CDS
CATTACTTCCTATGTCTGAT+GGG 0.447968 3.1:+6395073 MS.gene56333:CDS
TCTCCATTAGGGGCTAATAA+AGG 0.448593 3.1:-6392779 None:intergenic
TGATGATTGACACCAACAAA+CGG 0.449717 3.1:-6393598 None:intergenic
GAGCAATCATGTTTCTTCGT+TGG 0.456664 3.1:-6393082 None:intergenic
ACACAATACTTAGTTTCGTT+CGG 0.457073 3.1:-6394384 None:intergenic
GGCTAAGGTGTATGTCTTCG+AGG 0.457503 3.1:+6393698 MS.gene56333:CDS
TATCCTACTTTGCTAGAATG+AGG 0.459924 3.1:+6393410 MS.gene56333:CDS
AAAACTAGAAACTCTAAGAA+AGG 0.460549 3.1:+6392971 MS.gene56333:CDS
ACTCCAAGACAAGGCTGAAA+AGG 0.462412 3.1:+6394146 MS.gene56333:CDS
CAAATGGTCTAGCAAGAAGT+TGG 0.463702 3.1:+6394716 MS.gene56333:CDS
AGGTTGTGTTTCCTAATACT+AGG 0.465284 3.1:+6393773 MS.gene56333:CDS
TTAAAACATGATTTCTGGGC+CGG 0.468973 3.1:+6394021 MS.gene56333:CDS
GACATCATTTGTTGTTTCAA+AGG 0.472169 3.1:-6392846 None:intergenic
GCAAAAGAAAGACACCTTCT+CGG 0.472868 3.1:+6393361 MS.gene56333:CDS
GATAACGGTTGCTTTAAAGA+AGG 0.473052 3.1:+6393111 MS.gene56333:CDS
AACATCACCAAAGTATTCAT+AGG 0.473828 3.1:-6393524 None:intergenic
TTTGTTGGTGTCAATCATCA+TGG 0.475674 3.1:+6393601 MS.gene56333:CDS
CCACACATAGAAAGATTTGA+AGG 0.478166 3.1:+6394612 MS.gene56333:CDS
GCCACATTGTGGTGTGGGAG+GGG 0.481690 3.1:+6394755 MS.gene56333:CDS
ATTTGTTGTTTCAAAGGTCC+CGG 0.482096 3.1:-6392840 None:intergenic
TCGGGAAGGAAGGAGATGGC+AGG 0.482875 3.1:+6393380 MS.gene56333:CDS
TTGAAATTGTCTCTCGATTG+TGG 0.489013 3.1:-6394223 None:intergenic
CTTGTTTCATGGCATATTCA+CGG 0.492232 3.1:-6392937 None:intergenic
AAAACCACTAGTTGACTGTT+GGG 0.492621 3.1:-6395133 None:intergenic
GACAATACTCTCCTCTAAAA+CGG 0.498094 3.1:-6394352 None:intergenic
CGTGAATATGCCATGAAACA+AGG 0.498225 3.1:+6392938 MS.gene56333:CDS
TGTATGAAGAAATGATCAAA+TGG 0.501577 3.1:+6394700 MS.gene56333:CDS
TTAAAAGACATACCGATAGT+AGG 0.501742 3.1:-6392887 None:intergenic
TTTCGAAGAGCGGGAAAGAT+GGG 0.502201 3.1:+6393987 MS.gene56333:CDS
GTTGGATTCGTCTTCAAAGT+TGG 0.502236 3.1:-6393064 None:intergenic
CATCTCCTTCCTTCCCGAGA+AGG 0.502837 3.1:-6393375 None:intergenic
TGGTCATCTTAGAGTGAAAG+AGG 0.503540 3.1:+6394497 MS.gene56333:CDS
TTACCTGGTTGTTCGTAACA+TGG 0.507347 3.1:+6393677 MS.gene56333:CDS
TATGTCTTCGAGGCCTCCAA+TGG 0.508338 3.1:+6393708 MS.gene56333:CDS
AAAACCAAATGTTTCGGTCG+TGG 0.509616 3.1:+6394935 MS.gene56333:CDS
TCGGTTACAATTCCCATTGG+AGG 0.511504 3.1:-6393721 None:intergenic
TTACGAAAATCTAACATTTG+TGG 0.512305 3.1:+6393315 MS.gene56333:CDS
AAACGATCAGGCAGGTGTAC+GGG 0.512319 3.1:+6393252 MS.gene56333:CDS
CGTTCCATGGTATGTGATGC+CGG 0.512631 3.1:+6393289 MS.gene56333:CDS
GAGAGATGTCAGAAACTTTG+TGG 0.514693 3.1:+6393339 MS.gene56333:CDS
CAAAAGAAAGACACCTTCTC+GGG 0.517286 3.1:+6393362 MS.gene56333:CDS
CCTTCAAATCTTTCTATGTG+TGG 0.521556 3.1:-6394612 None:intergenic
ATAACGGTTGCTTTAAAGAA+GGG 0.522275 3.1:+6393112 MS.gene56333:CDS
AAACTAGAAACTCTAAGAAA+GGG 0.523644 3.1:+6392972 MS.gene56333:CDS
TTCCCTCATTCTAGCAAAGT+AGG 0.524536 3.1:-6393413 None:intergenic
AACTCTAAGAAAGGGTCTGA+TGG 0.527361 3.1:+6392980 MS.gene56333:CDS
AAATGGTCTAGCAAGAAGTT+GGG 0.529100 3.1:+6394717 MS.gene56333:CDS
GAACAAAAGTTTCCGTTCCA+TGG 0.529264 3.1:+6393276 MS.gene56333:CDS
GGATTCGTCTTCAAAGTTGG+TGG 0.530111 3.1:-6393061 None:intergenic
AAGTCTGCCTATGAATACTT+TGG 0.530323 3.1:+6393517 MS.gene56333:CDS
TAAACGATCAGGCAGGTGTA+CGG 0.533293 3.1:+6393251 MS.gene56333:CDS
AAGTATTGTGTTGATTTCAA+CGG 0.536214 3.1:+6394396 MS.gene56333:CDS
TAAAACCACTAGTTGACTGT+TGG 0.536849 3.1:-6395134 None:intergenic
ATCCTACTTTGCTAGAATGA+GGG 0.537508 3.1:+6393411 MS.gene56333:CDS
TCCGTTAAAAGTACCACGTA+CGG 0.537769 3.1:+6394839 MS.gene56333:CDS
TGATCGGTTACAATTCCCAT+TGG 0.541217 3.1:-6393724 None:intergenic
CTATGAGATTGACATGGACG+AGG 0.547341 3.1:+6393453 MS.gene56333:CDS
TTGCATAGCCTTGCACTGAT+CGG 0.547738 3.1:-6393740 None:intergenic
GATAAATTCACGCCTACTAT+CGG 0.551302 3.1:+6392875 MS.gene56333:CDS
ATTCTAACTTGTGCAAGAGA+AGG 0.552020 3.1:+6393019 MS.gene56333:CDS
AGACACCTTCTCGGGAAGGA+AGG 0.553011 3.1:+6393370 MS.gene56333:CDS
CAGCCACATTGTGGTGTGGG+AGG 0.557227 3.1:+6394753 MS.gene56333:CDS
TTACAGCCACATTGTGGTGT+GGG 0.557892 3.1:+6394750 MS.gene56333:CDS
TGTTACGAACAACCAGGTAA+AGG 0.558836 3.1:-6393674 None:intergenic
AGCCACATTGTGGTGTGGGA+GGG 0.562336 3.1:+6394754 MS.gene56333:CDS
CTAAATTTATCTTGCCACGA+TGG 0.563368 3.1:+6394526 MS.gene56333:CDS
GAGATACAAGTAGAATTTCG+TGG 0.566723 3.1:+6394273 MS.gene56333:CDS
ATGTCTTCGAGGCCTCCAAT+GGG 0.571048 3.1:+6393709 MS.gene56333:CDS
TTTACAGCCACATTGTGGTG+TGG 0.571102 3.1:+6394749 MS.gene56333:CDS
TGTTTCCTAATACTAGGCAT+AGG 0.571109 3.1:+6393779 MS.gene56333:CDS
TTGTTGGTGTCAATCATCAT+GGG 0.576932 3.1:+6393602 MS.gene56333:CDS
TCTCGAAGGTGTGACTACAT+TGG 0.577648 3.1:+6394311 MS.gene56333:CDS
TGTTTGATGTTTGAGTTCAG+AGG 0.578292 3.1:+6394444 MS.gene56333:CDS
TCTGATGGGTTTCAAGCGTA+CGG 0.579844 3.1:+6395087 MS.gene56333:CDS
AAGATACTAGGTCCTTTACC+TGG 0.580541 3.1:+6393662 MS.gene56333:CDS
GGTTGTTCGTAACATGGCTA+AGG 0.589210 3.1:+6393683 MS.gene56333:CDS
TGCATCAATGGGGAAAGATG+TGG 0.589332 3.1:+6395167 MS.gene56333:CDS
TCAGACATAGGAAGTAATGT+AGG 0.589454 3.1:-6395069 None:intergenic
TTGTGTGTATGATTCTCTGC+GGG 0.590009 3.1:+6393888 MS.gene56333:CDS
ATATTTGTTTGTCAAGTAGG+TGG 0.595151 3.1:-6393560 None:intergenic
GCTTGAAACCCATCAGACAT+AGG 0.598911 3.1:-6395081 None:intergenic
GTGAATATGCCATGAAACAA+GGG 0.602322 3.1:+6392939 MS.gene56333:CDS
TGATTGCTCAGCTAAGATAA+CGG 0.602603 3.1:+6393096 MS.gene56333:CDS
CGACAACGCACTCCAAGACA+AGG 0.606607 3.1:+6394137 MS.gene56333:CDS
AGATACAAGTAGAATTTCGT+GGG 0.607840 3.1:+6394274 MS.gene56333:CDS
AGAAAGACACCTTCTCGGGA+AGG 0.609091 3.1:+6393366 MS.gene56333:CDS
ACCACCGGCATCACATACCA+TGG 0.613048 3.1:-6393293 None:intergenic
GTTCGAAGACGTCCCGTACG+TGG 0.613542 3.1:-6394852 None:intergenic
AAATGCAACTGTTATCTCGA+AGG 0.615193 3.1:+6394297 MS.gene56333:CDS
TTCCTAATACTAGGCATAGG+TGG 0.615209 3.1:+6393782 MS.gene56333:CDS
CAAGCACAATCATTCCATGC+GGG 0.616971 3.1:+6394193 MS.gene56333:CDS
CGTGGCAAGATAAATTTAGA+CGG 0.619992 3.1:-6394522 None:intergenic
CCGTTAAAAGTACCACGTAC+GGG 0.620041 3.1:+6394840 MS.gene56333:CDS
AATTGTAACCGATCAGTGCA+AGG 0.620761 3.1:+6393732 MS.gene56333:CDS
CGGGAAGGAAGGAGATGGCA+GGG 0.622349 3.1:+6393381 MS.gene56333:CDS
TCATCCCAACAGTCAACTAG+TGG 0.623204 3.1:+6395129 MS.gene56333:CDS
AAAGGATGCGCACAATACAA+AGG 0.625240 3.1:+6393844 MS.gene56333:CDS
CGGCATCACATACCATGGAA+CGG 0.625469 3.1:-6393288 None:intergenic
ATTAGTTTACAGCCACATTG+TGG 0.625843 3.1:+6394744 MS.gene56333:CDS
GTCATCTAGCTCTCCATTAG+GGG 0.626799 3.1:-6392789 None:intergenic
ATTGTGGAATTTGACCCGCA+TGG 0.627292 3.1:-6394207 None:intergenic
CTTCTCGGGAAGGAAGGAGA+TGG 0.631777 3.1:+6393376 MS.gene56333:CDS
CATTTCTTCATACAAATCAG+AGG 0.636013 3.1:-6394691 None:intergenic
CAAGGCTGAAAAGGAATACG+AGG 0.638254 3.1:+6394155 MS.gene56333:CDS
GGATGATCGATCAATATAGG+AGG 0.639611 3.1:-6392758 None:intergenic
AGATAAGTCCAACTAAATCA+CGG 0.645312 3.1:+6393176 MS.gene56333:CDS
TACAAATCAGAGGTCTGACT+AGG 0.645507 3.1:-6394681 None:intergenic
CCTAATGGAGAGCTAGATGA+CGG 0.647509 3.1:+6392791 MS.gene56333:CDS
TTATGAAATTGCAGAATGTG+CGG 0.662542 3.1:+6394650 MS.gene56333:CDS
ATGATTGACACCAACAAACG+GGG 0.665562 3.1:-6393596 None:intergenic
CCGGAATGTCAACAACAAAG+AGG 0.666474 3.1:+6394040 MS.gene56333:CDS
TTAGAGGAGAGTATTGTCTG+TGG 0.669312 3.1:+6394357 MS.gene56333:CDS
GACGTCTTCGAACTAATCGT+CGG 0.672323 3.1:+6394862 MS.gene56333:CDS
GGATGATAGCTTAAACACGA+TGG 0.674970 3.1:+6394776 MS.gene56333:CDS
TGTCGTTACTTGCATCAATG+GGG 0.677462 3.1:+6395157 MS.gene56333:CDS
AGTAGGCGTGAATTTATCTG+TGG 0.680995 3.1:-6392870 None:intergenic
TGATAGCTTAAACACGATGG+AGG 0.690849 3.1:+6394779 MS.gene56333:CDS
TCAAGCACAATCATTCCATG+CGG 0.697666 3.1:+6394192 MS.gene56333:CDS
TCCCCTCCCACACCACAATG+TGG 0.698773 3.1:-6394756 None:intergenic
TAGCCATGTTACGAACAACC+AGG 0.700467 3.1:-6393680 None:intergenic
ATTGTGTGTATGATTCTCTG+CGG 0.733784 3.1:+6393887 MS.gene56333:CDS
TCCATGGTATGTGATGCCGG+TGG 0.764195 3.1:+6393292 MS.gene56333:CDS
AGATTGATATGCATGCACAG+CGG 0.798983 3.1:+6393218 MS.gene56333:CDS
GTATTGTGTTGATTTCAACG+GGG 0.841514 3.1:+6394398 MS.gene56333:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTAATCACAATAATAAT+AGG - chr3.1:6394978-6394997 None:intergenic 15.0%
!!! AAATCATGTTTTAAATAACA+TGG - chr3.1:6394015-6394034 None:intergenic 15.0%
!!! TTATTTAAAACATGATTTCT+GGG + chr3.1:6394017-6394036 MS.gene56333:CDS 15.0%
!! AAGAAAAAAACCAAATGTTT+CGG + chr3.1:6394929-6394948 MS.gene56333:CDS 20.0%
!! ACAACATTCATTGAAAAATA+TGG + chr3.1:6393934-6393953 MS.gene56333:CDS 20.0%
!! ATTCATTGAAAAATATGGTT+TGG + chr3.1:6393939-6393958 MS.gene56333:CDS 20.0%
!! TTCATTGAAAAATATGGTTT+GGG + chr3.1:6393940-6393959 MS.gene56333:CDS 20.0%
!!! GTTATTTAAAACATGATTTC+TGG + chr3.1:6394016-6394035 MS.gene56333:CDS 20.0%
! AAAATTGCCGAAAAATTGAA+AGG + chr3.1:6393826-6393845 MS.gene56333:CDS 25.0%
! TGTATGAAGAAATGATCAAA+TGG + chr3.1:6394700-6394719 MS.gene56333:CDS 25.0%
! TTACGAAAATCTAACATTTG+TGG + chr3.1:6393315-6393334 MS.gene56333:CDS 25.0%
!! AAAACTAGAAACTCTAAGAA+AGG + chr3.1:6392971-6392990 MS.gene56333:CDS 25.0%
!! AAACTAGAAACTCTAAGAAA+GGG + chr3.1:6392972-6392991 MS.gene56333:CDS 25.0%
!! TATCGGTATGTCTTTTAAAT+CGG + chr3.1:6392892-6392911 MS.gene56333:CDS 25.0%
!! TATCTCCATATACTTTTCAT+GGG - chr3.1:6394259-6394278 None:intergenic 25.0%
!!! AAGTATTGTGTTGATTTCAA+CGG + chr3.1:6394396-6394415 MS.gene56333:CDS 25.0%
!!! ACTTTTAACGGATTAAGAAT+TGG - chr3.1:6394831-6394850 None:intergenic 25.0%
!!! TTTTTTCACAATCTTTTCAG+TGG - chr3.1:6394895-6394914 None:intergenic 25.0%
AAAGGATGATCGATCAATAT+AGG - chr3.1:6392764-6392783 None:intergenic 30.0%
ACACAATACTTAGTTTCGTT+CGG - chr3.1:6394387-6394406 None:intergenic 30.0%
AGATAAGTCCAACTAAATCA+CGG + chr3.1:6393176-6393195 MS.gene56333:CDS 30.0%
AGATACAAGTAGAATTTCGT+GGG + chr3.1:6394274-6394293 MS.gene56333:CDS 30.0%
ATATTTGTTTGTCAAGTAGG+TGG - chr3.1:6393563-6393582 None:intergenic 30.0%
CATTTCTTCATACAAATCAG+AGG - chr3.1:6394694-6394713 None:intergenic 30.0%
GTCATATTTGTTTGTCAAGT+AGG - chr3.1:6393566-6393585 None:intergenic 30.0%
TTAAAAGACATACCGATAGT+AGG - chr3.1:6392890-6392909 None:intergenic 30.0%
TTATGAAATTGCAGAATGTG+CGG + chr3.1:6394650-6394669 MS.gene56333:CDS 30.0%
! AACATCACCAAAGTATTCAT+AGG - chr3.1:6393527-6393546 None:intergenic 30.0%
! CTTTTTCTATGAGATTGACA+TGG + chr3.1:6393447-6393466 MS.gene56333:CDS 30.0%
! GTATCTCCATATACTTTTCA+TGG - chr3.1:6394260-6394279 None:intergenic 30.0%
! TCATGTGCAGAATATTTTCT+GGG + chr3.1:6393480-6393499 MS.gene56333:CDS 30.0%
! TTCATGTGCAGAATATTTTC+TGG + chr3.1:6393479-6393498 MS.gene56333:CDS 30.0%
! TTTTATCAGCTGAAGATACT+AGG + chr3.1:6393650-6393669 MS.gene56333:CDS 30.0%
!! AGTATTGTGTTGATTTCAAC+GGG + chr3.1:6394397-6394416 MS.gene56333:CDS 30.0%
!! ATAACGGTTGCTTTAAAGAA+GGG + chr3.1:6393112-6393131 MS.gene56333:CDS 30.0%
!! GACAATTTTGATAAACGATC+AGG + chr3.1:6393240-6393259 MS.gene56333:CDS 30.0%
!! GACATCATTTGTTGTTTCAA+AGG - chr3.1:6392849-6392868 None:intergenic 30.0%
!!! AGTATGAATGCTTTTTTCGA+TGG + chr3.1:6394069-6394088 MS.gene56333:CDS 30.0%
!!! TATGTGTGGTTGTAGTTTTT+TGG - chr3.1:6394601-6394620 None:intergenic 30.0%
AAAACCACTAGTTGACTGTT+GGG - chr3.1:6395136-6395155 None:intergenic 35.0%
AAATGCAACTGTTATCTCGA+AGG + chr3.1:6394297-6394316 MS.gene56333:CDS 35.0%
AAATGGTCTAGCAAGAAGTT+GGG + chr3.1:6394717-6394736 MS.gene56333:CDS 35.0%
AAGTCTGCCTATGAATACTT+TGG + chr3.1:6393517-6393536 MS.gene56333:CDS 35.0%
ACATTACTTCCTATGTCTGA+TGG + chr3.1:6395072-6395091 MS.gene56333:CDS 35.0%
AGGTTGTGTTTCCTAATACT+AGG + chr3.1:6393773-6393792 MS.gene56333:CDS 35.0%
ATCCTACTTTGCTAGAATGA+GGG + chr3.1:6393411-6393430 MS.gene56333:CDS 35.0%
ATGTCGTTACTTGCATCAAT+GGG + chr3.1:6395156-6395175 MS.gene56333:CDS 35.0%
ATTGTGTGTATGATTCTCTG+CGG + chr3.1:6393887-6393906 MS.gene56333:CDS 35.0%
CATTACTTCCTATGTCTGAT+GGG + chr3.1:6395073-6395092 MS.gene56333:CDS 35.0%
CCACACATAGAAAGATTTGA+AGG + chr3.1:6394612-6394631 MS.gene56333:CDS 35.0%
CCTTCAAATCTTTCTATGTG+TGG - chr3.1:6394615-6394634 None:intergenic 35.0%
CGTGGCAAGATAAATTTAGA+CGG - chr3.1:6394525-6394544 None:intergenic 35.0%
CTAAATTTATCTTGCCACGA+TGG + chr3.1:6394526-6394545 MS.gene56333:CDS 35.0%
CTTGTTTCATGGCATATTCA+CGG - chr3.1:6392940-6392959 None:intergenic 35.0%
GAGATACAAGTAGAATTTCG+TGG + chr3.1:6394273-6394292 MS.gene56333:CDS 35.0%
GATAAATTCACGCCTACTAT+CGG + chr3.1:6392875-6392894 MS.gene56333:CDS 35.0%
GGATTAAGAATTGGTTGATC+AGG - chr3.1:6394822-6394841 None:intergenic 35.0%
GTGAATATGCCATGAAACAA+GGG + chr3.1:6392939-6392958 MS.gene56333:CDS 35.0%
TAAAACCACTAGTTGACTGT+TGG - chr3.1:6395137-6395156 None:intergenic 35.0%
TATCCTACTTTGCTAGAATG+AGG + chr3.1:6393410-6393429 MS.gene56333:CDS 35.0%
TATGTCGTTACTTGCATCAA+TGG + chr3.1:6395155-6395174 MS.gene56333:CDS 35.0%
TCAGACATAGGAAGTAATGT+AGG - chr3.1:6395072-6395091 None:intergenic 35.0%
TGATGATTGACACCAACAAA+CGG - chr3.1:6393601-6393620 None:intergenic 35.0%
TGATTGCTCAGCTAAGATAA+CGG + chr3.1:6393096-6393115 MS.gene56333:CDS 35.0%
TGTTTCCTAATACTAGGCAT+AGG + chr3.1:6393779-6393798 MS.gene56333:CDS 35.0%
TTGAAATTGTCTCTCGATTG+TGG - chr3.1:6394226-6394245 None:intergenic 35.0%
! ATACTTTTCATGGGTGTACT+CGG - chr3.1:6394250-6394269 None:intergenic 35.0%
! ATCTACATACACCGTTTTAG+AGG + chr3.1:6394341-6394360 MS.gene56333:CDS 35.0%
! ATGGTTTGGGTGAAAATGAT+TGG + chr3.1:6393953-6393972 MS.gene56333:CDS 35.0%
! ATTAGTTTACAGCCACATTG+TGG + chr3.1:6394744-6394763 MS.gene56333:CDS 35.0%
! ATTCTAACTTGTGCAAGAGA+AGG + chr3.1:6393019-6393038 MS.gene56333:CDS 35.0%
! CAATCCATTTTACTAGGTTG+CGG + chr3.1:6393625-6393644 MS.gene56333:CDS 35.0%
! GACAATACTCTCCTCTAAAA+CGG - chr3.1:6394355-6394374 None:intergenic 35.0%
! GTACACCCATGAAAAGTATA+TGG + chr3.1:6394251-6394270 MS.gene56333:CDS 35.0%
! TGAATACCATTTTCGAAGAG+CGG + chr3.1:6393977-6393996 MS.gene56333:CDS 35.0%
! TGCGCATCCTTTCAATTTTT+CGG - chr3.1:6393836-6393855 None:intergenic 35.0%
! TGTTAGATTTTCGTAACCAC+CGG - chr3.1:6393311-6393330 None:intergenic 35.0%
! TGTTTGATGTTTGAGTTCAG+AGG + chr3.1:6394444-6394463 MS.gene56333:CDS 35.0%
! TTAAAACATGATTTCTGGGC+CGG + chr3.1:6394021-6394040 MS.gene56333:CDS 35.0%
! TTCACATTTTTACTCCATCG+TGG - chr3.1:6394543-6394562 None:intergenic 35.0%
! TTGGTGGTATGTTTGATTCA+TGG - chr3.1:6393048-6393067 None:intergenic 35.0%
! TTTCACAATCTTTTCAGTGG+TGG - chr3.1:6394892-6394911 None:intergenic 35.0%
!! ATTTGTTGTTTCAAAGGTCC+CGG - chr3.1:6392843-6392862 None:intergenic 35.0%
!! ATTTTGATAAACGATCAGGC+AGG + chr3.1:6393244-6393263 MS.gene56333:CDS 35.0%
!! GATAACGGTTGCTTTAAAGA+AGG + chr3.1:6393111-6393130 MS.gene56333:CDS 35.0%
!! GTATTGTGTTGATTTCAACG+GGG + chr3.1:6394398-6394417 MS.gene56333:CDS 35.0%
!! TTGCTTTAAAGAAGGGTCTA+TGG + chr3.1:6393119-6393138 MS.gene56333:CDS 35.0%
!! TTGTTGGTGTCAATCATCAT+GGG + chr3.1:6393602-6393621 MS.gene56333:CDS 35.0%
!! TTTGTTGGTGTCAATCATCA+TGG + chr3.1:6393601-6393620 MS.gene56333:CDS 35.0%
!!! GGGTTGATGATTTTGTTGTT+GGG + chr3.1:6393908-6393927 MS.gene56333:CDS 35.0%
!!! TTGATGATTTTGTTGTTGGG+TGG + chr3.1:6393911-6393930 MS.gene56333:CDS 35.0%
AAAACCAAATGTTTCGGTCG+TGG + chr3.1:6394935-6394954 MS.gene56333:CDS 40.0%
AAAGGATGCGCACAATACAA+AGG + chr3.1:6393844-6393863 MS.gene56333:CDS 40.0%
AAGACCGCAACCTAGTAAAA+TGG - chr3.1:6393632-6393651 None:intergenic 40.0%
AAGATACTAGGTCCTTTACC+TGG + chr3.1:6393662-6393681 MS.gene56333:CDS 40.0%
AATTGTAACCGATCAGTGCA+AGG + chr3.1:6393732-6393751 MS.gene56333:CDS 40.0%
ACTAAATCACGGTTGTTTGC+TGG + chr3.1:6393187-6393206 MS.gene56333:CDS 40.0%
AGATTGATATGCATGCACAG+CGG + chr3.1:6393218-6393237 MS.gene56333:CDS 40.0%
AGTAGGCGTGAATTTATCTG+TGG - chr3.1:6392873-6392892 None:intergenic 40.0%
ATGATTGACACCAACAAACG+GGG - chr3.1:6393599-6393618 None:intergenic 40.0%
CAAAAGAAAGACACCTTCTC+GGG + chr3.1:6393362-6393381 MS.gene56333:CDS 40.0%
CAAATGGTCTAGCAAGAAGT+TGG + chr3.1:6394716-6394735 MS.gene56333:CDS 40.0%
CATCCTTTATTAGCCCCTAA+TGG + chr3.1:6392776-6392795 MS.gene56333:CDS 40.0%
CGTGAATATGCCATGAAACA+AGG + chr3.1:6392938-6392957 MS.gene56333:CDS 40.0%
GAACAAAAGTTTCCGTTCCA+TGG + chr3.1:6393276-6393295 MS.gene56333:CDS 40.0%
GAGAGATGTCAGAAACTTTG+TGG + chr3.1:6393339-6393358 MS.gene56333:CDS 40.0%
GAGCAATCATGTTTCTTCGT+TGG - chr3.1:6393085-6393104 None:intergenic 40.0%
GATGATTGACACCAACAAAC+GGG - chr3.1:6393600-6393619 None:intergenic 40.0%
GCAAAAGAAAGACACCTTCT+CGG + chr3.1:6393361-6393380 MS.gene56333:CDS 40.0%
GCAAACAACCGTGATTTAGT+TGG - chr3.1:6393187-6393206 None:intergenic 40.0%
GGATGATAGCTTAAACACGA+TGG + chr3.1:6394776-6394795 MS.gene56333:CDS 40.0%
GGATGATCGATCAATATAGG+AGG - chr3.1:6392761-6392780 None:intergenic 40.0%
GGCTATGCAAAATGCAATTC+AGG + chr3.1:6393753-6393772 MS.gene56333:CDS 40.0%
GTTGGATTCGTCTTCAAAGT+TGG - chr3.1:6393067-6393086 None:intergenic 40.0%
TACAAATCAGAGGTCTGACT+AGG - chr3.1:6394684-6394703 None:intergenic 40.0%
TCAAGCACAATCATTCCATG+CGG + chr3.1:6394192-6394211 MS.gene56333:CDS 40.0%
TCTCCATTAGGGGCTAATAA+AGG - chr3.1:6392782-6392801 None:intergenic 40.0%
TGATAGCTTAAACACGATGG+AGG + chr3.1:6394779-6394798 MS.gene56333:CDS 40.0%
TGATCGGTTACAATTCCCAT+TGG - chr3.1:6393727-6393746 None:intergenic 40.0%
TGGTCATCTTAGAGTGAAAG+AGG + chr3.1:6394497-6394516 MS.gene56333:CDS 40.0%
TGTCGTTACTTGCATCAATG+GGG + chr3.1:6395157-6395176 MS.gene56333:CDS 40.0%
TGTTACGAACAACCAGGTAA+AGG - chr3.1:6393677-6393696 None:intergenic 40.0%
TTACCTGGTTGTTCGTAACA+TGG + chr3.1:6393677-6393696 MS.gene56333:CDS 40.0%
TTCCCTCATTCTAGCAAAGT+AGG - chr3.1:6393416-6393435 None:intergenic 40.0%
TTCCTAATACTAGGCATAGG+TGG + chr3.1:6393782-6393801 MS.gene56333:CDS 40.0%
TTGTGTGTATGATTCTCTGC+GGG + chr3.1:6393888-6393907 MS.gene56333:CDS 40.0%
! AACTCTAAGAAAGGGTCTGA+TGG + chr3.1:6392980-6392999 MS.gene56333:CDS 40.0%
! AGGAATACGAGGCAGATTTT+CGG + chr3.1:6394166-6394185 MS.gene56333:CDS 40.0%
! CATGGGCAATCCATTTTACT+AGG + chr3.1:6393619-6393638 MS.gene56333:CDS 40.0%
! GAATACCATTTTCGAAGAGC+GGG + chr3.1:6393978-6393997 MS.gene56333:CDS 40.0%
!! AGACATTCGCTTTTCGTACT+TGG + chr3.1:6394477-6394496 MS.gene56333:CDS 40.0%
!! ATTCCTTTTCAGCCTTGTCT+TGG - chr3.1:6394152-6394171 None:intergenic 40.0%
!! CCTCTTTGTTGTTGACATTC+CGG - chr3.1:6394043-6394062 None:intergenic 40.0%
!! TCCGTTAAAAGTACCACGTA+CGG + chr3.1:6394839-6394858 MS.gene56333:CDS 40.0%
!! TTAGAGGAGAGTATTGTCTG+TGG + chr3.1:6394357-6394376 MS.gene56333:CDS 40.0%
!!! CGGGTTGATGATTTTGTTGT+TGG + chr3.1:6393907-6393926 MS.gene56333:CDS 40.0%
ACTCCAAGACAAGGCTGAAA+AGG + chr3.1:6394146-6394165 MS.gene56333:CDS 45.0%
ACTTCCACGACCGAAACATT+TGG - chr3.1:6394942-6394961 None:intergenic 45.0%
ATTGTGGAATTTGACCCGCA+TGG - chr3.1:6394210-6394229 None:intergenic 45.0%
CAAGCACAATCATTCCATGC+GGG + chr3.1:6394193-6394212 MS.gene56333:CDS 45.0%
CAAGGCTGAAAAGGAATACG+AGG + chr3.1:6394155-6394174 MS.gene56333:CDS 45.0%
CACCACCTATGCCTAGTATT+AGG - chr3.1:6393787-6393806 None:intergenic 45.0%
CCGGAATGTCAACAACAAAG+AGG + chr3.1:6394040-6394059 MS.gene56333:CDS 45.0%
CCTAATGGAGAGCTAGATGA+CGG + chr3.1:6392791-6392810 MS.gene56333:CDS 45.0%
CTATGAGATTGACATGGACG+AGG + chr3.1:6393453-6393472 MS.gene56333:CDS 45.0%
GACGTCTTCGAACTAATCGT+CGG + chr3.1:6394862-6394881 MS.gene56333:CDS 45.0%
GCTTGAAACCCATCAGACAT+AGG - chr3.1:6395084-6395103 None:intergenic 45.0%
GGATTCGTCTTCAAAGTTGG+TGG - chr3.1:6393064-6393083 None:intergenic 45.0%
GGTTGTTCGTAACATGGCTA+AGG + chr3.1:6393683-6393702 MS.gene56333:CDS 45.0%
TAAACGATCAGGCAGGTGTA+CGG + chr3.1:6393251-6393270 MS.gene56333:CDS 45.0%
TAGCCATGTTACGAACAACC+AGG - chr3.1:6393683-6393702 None:intergenic 45.0%
TCATCCCAACAGTCAACTAG+TGG + chr3.1:6395129-6395148 MS.gene56333:CDS 45.0%
TCGGTTACAATTCCCATTGG+AGG - chr3.1:6393724-6393743 None:intergenic 45.0%
TCTTTCCCGCTCTTCGAAAA+TGG - chr3.1:6393986-6394005 None:intergenic 45.0%
TGCATCAATGGGGAAAGATG+TGG + chr3.1:6395167-6395186 MS.gene56333:CDS 45.0%
TTACAGCCACATTGTGGTGT+GGG + chr3.1:6394750-6394769 MS.gene56333:CDS 45.0%
TTTACAGCCACATTGTGGTG+TGG + chr3.1:6394749-6394768 MS.gene56333:CDS 45.0%
TTTCGAAGAGCGGGAAAGAT+GGG + chr3.1:6393987-6394006 MS.gene56333:CDS 45.0%
TTTCGGTCGTGGAAGTAAGT+TGG + chr3.1:6394946-6394965 MS.gene56333:intron 45.0%
! ATGTCATTTGCCCCGTTTGT+TGG + chr3.1:6393586-6393605 MS.gene56333:CDS 45.0%
! CCCGTACGTGGTACTTTTAA+CGG - chr3.1:6394843-6394862 None:intergenic 45.0%
! GATCGCAAACCCTTGTTTCA+TGG - chr3.1:6392951-6392970 None:intergenic 45.0%
! TCTCGAAGGTGTGACTACAT+TGG + chr3.1:6394311-6394330 MS.gene56333:CDS 45.0%
! TTGCATAGCCTTGCACTGAT+CGG - chr3.1:6393743-6393762 None:intergenic 45.0%
! TTTTCGAAGAGCGGGAAAGA+TGG + chr3.1:6393986-6394005 MS.gene56333:CDS 45.0%
!! CCGTTAAAAGTACCACGTAC+GGG + chr3.1:6394840-6394859 MS.gene56333:CDS 45.0%
!! CGTCATCTAGCTCTCCATTA+GGG - chr3.1:6392793-6392812 None:intergenic 45.0%
!! GTCATCTAGCTCTCCATTAG+GGG - chr3.1:6392792-6392811 None:intergenic 45.0%
!! TCTGATGGGTTTCAAGCGTA+CGG + chr3.1:6395087-6395106 MS.gene56333:CDS 45.0%
AAACGATCAGGCAGGTGTAC+GGG + chr3.1:6393252-6393271 MS.gene56333:CDS 50.0%
AGAAAGACACCTTCTCGGGA+AGG + chr3.1:6393366-6393385 MS.gene56333:CDS 50.0%
ATGTCTTCGAGGCCTCCAAT+GGG + chr3.1:6393709-6393728 MS.gene56333:CDS 50.0%
CGGCATCACATACCATGGAA+CGG - chr3.1:6393291-6393310 None:intergenic 50.0%
CGTTCCATGGTATGTGATGC+CGG + chr3.1:6393289-6393308 MS.gene56333:CDS 50.0%
CTAGGCATAGGTGGTGTCTA+TGG + chr3.1:6393791-6393810 MS.gene56333:CDS 50.0%
GGCTAAGGTGTATGTCTTCG+AGG + chr3.1:6393698-6393717 MS.gene56333:CDS 50.0%
TATGTCTTCGAGGCCTCCAA+TGG + chr3.1:6393708-6393727 MS.gene56333:CDS 50.0%
! CGTGTTGACGTTTGGGATTC+CGG + chr3.1:6392821-6392840 MS.gene56333:CDS 50.0%
! GTGTTGACGTTTGGGATTCC+GGG + chr3.1:6392822-6392841 MS.gene56333:CDS 50.0%
! TGCTGCTCGTGTTGACGTTT+GGG + chr3.1:6392814-6392833 MS.gene56333:CDS 50.0%
!! CCGTCATCTAGCTCTCCATT+AGG - chr3.1:6392794-6392813 None:intergenic 50.0%
ACCACCGGCATCACATACCA+TGG - chr3.1:6393296-6393315 None:intergenic 55.0%
AGACACCTTCTCGGGAAGGA+AGG + chr3.1:6393370-6393389 MS.gene56333:CDS 55.0%
AGCCACATTGTGGTGTGGGA+GGG + chr3.1:6394754-6394773 MS.gene56333:CDS 55.0%
CATCTCCTTCCTTCCCGAGA+AGG - chr3.1:6393378-6393397 None:intergenic 55.0%
CGACAACGCACTCCAAGACA+AGG + chr3.1:6394137-6394156 MS.gene56333:CDS 55.0%
CTTCTCGGGAAGGAAGGAGA+TGG + chr3.1:6393376-6393395 MS.gene56333:CDS 55.0%
TCCATGGTATGTGATGCCGG+TGG + chr3.1:6393292-6393311 MS.gene56333:CDS 55.0%
! GTGCTGCTCGTGTTGACGTT+TGG + chr3.1:6392813-6392832 MS.gene56333:CDS 55.0%
CAGCCACATTGTGGTGTGGG+AGG + chr3.1:6394753-6394772 MS.gene56333:CDS 60.0%
CGGGAAGGAAGGAGATGGCA+GGG + chr3.1:6393381-6393400 MS.gene56333:CDS 60.0%
GCCACATTGTGGTGTGGGAG+GGG + chr3.1:6394755-6394774 MS.gene56333:CDS 60.0%
GTTCGAAGACGTCCCGTACG+TGG - chr3.1:6394855-6394874 None:intergenic 60.0%
TCCCCTCCCACACCACAATG+TGG - chr3.1:6394759-6394778 None:intergenic 60.0%
TCGGGAAGGAAGGAGATGGC+AGG + chr3.1:6393380-6393399 MS.gene56333:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 6392746 6395206 6392746 ID=MS.gene56333
chr3.1 mRNA 6392746 6395206 6392746 ID=MS.gene56333.t1;Parent=MS.gene56333
chr3.1 exon 6392746 6394959 6392746 ID=MS.gene56333.t1.exon1;Parent=MS.gene56333.t1
chr3.1 CDS 6392746 6394959 6392746 ID=cds.MS.gene56333.t1;Parent=MS.gene56333.t1
chr3.1 exon 6395069 6395206 6395069 ID=MS.gene56333.t1.exon2;Parent=MS.gene56333.t1
chr3.1 CDS 6395069 6395206 6395069 ID=cds.MS.gene56333.t1;Parent=MS.gene56333.t1
Gene Sequence

>MS.gene56333

ATGGCTGACTGTCCTCCTATATTGATCGATCATCCTTTATTAGCCCCTAATGGAGAGCTAGATGACGGTGCTGCTCGTGTTGACGTTTGGGATTCCGGGACCTTTGAAACAACAAATGATGTCGCCACAGATAAATTCACGCCTACTATCGGTATGTCTTTTAAATCGGTTGCAGATTGTAAGTCTTTTTACCGTGAATATGCCATGAAACAAGGGTTTGCGATCAAAACTAGAAACTCTAAGAAAGGGTCTGATGGCATGTTAAGATATTTCATTCTAACTTGTGCAAGAGAAGGTCACCATGAATCAAACATACCACCAACTTTGAAGACGAATCCAACGAAGAAACATGATTGCTCAGCTAAGATAACGGTTGCTTTAAAGAAGGGTCTATGGACTATTTTGTCTTTTAATTCATGTCATAATCATGAGATAAGTCCAACTAAATCACGGTTGTTTGCTGGCAATAAGAAGATTGATATGCATGCACAGCGGACAATTTTGATAAACGATCAGGCAGGTGTACGGGTGAACAAAAGTTTCCGTTCCATGGTATGTGATGCCGGTGGTTACGAAAATCTAACATTTGTGGAGAGAGATGTCAGAAACTTTGTGGCAAAAGAAAGACACCTTCTCGGGAAGGAAGGAGATGGCAGGGCACTTTTATCCTACTTTGCTAGAATGAGGGAATGCAACAAAGACTTTTTCTATGAGATTGACATGGACGAGGACTTTCATGTGCAGAATATTTTCTGGGCTGATGCACGTAGTAAGTCTGCCTATGAATACTTTGGTGATGTTGTCACGTTCGATACCACCTACTTGACAAACAAATATGACATGTCATTTGCCCCGTTTGTTGGTGTCAATCATCATGGGCAATCCATTTTACTAGGTTGCGGTCTTTTATCAGCTGAAGATACTAGGTCCTTTACCTGGTTGTTCGTAACATGGCTAAGGTGTATGTCTTCGAGGCCTCCAATGGGAATTGTAACCGATCAGTGCAAGGCTATGCAAAATGCAATTCAGGTTGTGTTTCCTAATACTAGGCATAGGTGGTGTCTATGGCATATAATGAGAAAAATTGCCGAAAAATTGAAAGGATGCGCACAATACAAAGGAATAAAAAATGATATGAAAAATTGTGTGTATGATTCTCTGCGGGTTGATGATTTTGTTGTTGGGTGGACAACATTCATTGAAAAATATGGTTTGGGTGAAAATGATTGGTTGAATACCATTTTCGAAGAGCGGGAAAGATGGGTGCCATGTTATTTAAAACATGATTTCTGGGCCGGAATGTCAACAACAAAGAGGAGTGAAAGTATGAATGCTTTTTTCGATGGTTACATTAATGCAAGAACTTCTCTCAGCGAATTTGTAAAGCAATACGACAACGCACTCCAAGACAAGGCTGAAAAGGAATACGAGGCAGATTTTCGGTCTTCAAGCACAATCATTCCATGCGGGTCAAATTCCACAATCGAGAGACAATTTCAAGCCGAGTACACCCATGAAAAGTATATGGAGATACAAGTAGAATTTCGTGGGAAATGCAACTGTTATCTCGAAGGTGTGACTACATTGGAAATTACATCTACATACACCGTTTTAGAGGAGAGTATTGTCTGTGGTAAACCGAACGAAACTAAGTATTGTGTTGATTTCAACGGGGAAGACAGTAATGTTACGTGCACTTGTTTGATGTTTGAGTTCAGAGGCATTTTGTGTAGACATTCGCTTTTCGTACTTGGTCATCTTAGAGTGAAAGAGGTTCCGTCTAAATTTATCTTGCCACGATGGAGTAAAAATGTGAAGAGAAAATATGCACACATGAAGACAAGTTACAATGCCAAAAAACTACAACCACACATAGAAAGATTTGAAGGTCTTTGCAAGACATTTTATGAAATTGCAGAATGTGCGGCTGAGACACCTAGTCAGACCTCTGATTTGTATGAAGAAATGATCAAATGGTCTAGCAAGAAGTTGGGCAAAATTAGTTTACAGCCACATTGTGGTGTGGGAGGGGATGATAGCTTAAACACGATGGAGGACTCATTATCACAGCAACCTGATCAACCAATTCTTAATCCGTTAAAAGTACCACGTACGGGACGTCTTCGAACTAATCGTCGGTTGTCCACCACTGAAAAGATTGTGAAAAAAAGAAGCAAAATGCAAAGAAAAAAACCAAATGTTTCGGTCGTGGAAGTAAGTTGGTGTTAACCTATTATTATTGTGATTACATTTGTTTTTTTTAATAGTAATACAGTGTTAATTATGTTAAATGTAATTACTATTTCACTCTGTAATACTACAGCCTACATTACTTCCTATGTCTGATGGGTTTCAAGCGTACGGTGATACGCTTAACTACTTCTCATCCCAACAGTCAACTAGTGGTTTTATGTCGTTACTTGCATCAATGGGGAAAGATGTGGACGCAGCTGAATTTTAA
Protein sequence

>MS.gene56333.t1

MADCPPILIDHPLLAPNGELDDGAARVDVWDSGTFETTNDVATDKFTPTIGMSFKSVADCKSFYREYAMKQGFAIKTRNSKKGSDGMLRYFILTCAREGHHESNIPPTLKTNPTKKHDCSAKITVALKKGLWTILSFNSCHNHEISPTKSRLFAGNKKIDMHAQRTILINDQAGVRVNKSFRSMVCDAGGYENLTFVERDVRNFVAKERHLLGKEGDGRALLSYFARMRECNKDFFYEIDMDEDFHVQNIFWADARSKSAYEYFGDVVTFDTTYLTNKYDMSFAPFVGVNHHGQSILLGCGLLSAEDTRSFTWLFVTWLRCMSSRPPMGIVTDQCKAMQNAIQVVFPNTRHRWCLWHIMRKIAEKLKGCAQYKGIKNDMKNCVYDSLRVDDFVVGWTTFIEKYGLGENDWLNTIFEERERWVPCYLKHDFWAGMSTTKRSESMNAFFDGYINARTSLSEFVKQYDNALQDKAEKEYEADFRSSSTIIPCGSNSTIERQFQAEYTHEKYMEIQVEFRGKCNCYLEGVTTLEITSTYTVLEESIVCGKPNETKYCVDFNGEDSNVTCTCLMFEFRGILCRHSLFVLGHLRVKEVPSKFILPRWSKNVKRKYAHMKTSYNAKKLQPHIERFEGLCKTFYEIAECAAETPSQTSDLYEEMIKWSSKKLGKISLQPHCGVGGDDSLNTMEDSLSQQPDQPILNPLKVPRTGRLRTNRRLSTTEKIVKKRSKMQRKKPNVSVVEPTLLPMSDGFQAYGDTLNYFSSQQSTSGFMSLLASMGKDVDAAEF