AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56338

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56338.t1 MTR_3g010660 96.273 322 12 0 1 322 1 322 0.0 642
MS.gene56338.t1 MTR_8g043960 65.584 308 91 4 16 322 20 313 1.29e-137 392
MS.gene56338.t1 MTR_7g088090 49.530 319 127 9 20 320 16 318 1.58e-83 255
MS.gene56338.t1 MTR_6g026800 50.625 320 129 9 19 322 15 321 1.81e-79 245
MS.gene56338.t1 MTR_4g085910 36.176 340 154 13 20 301 18 352 3.47e-42 150
MS.gene56338.t1 MTR_5g088230 46.067 178 76 6 1 170 1 166 2.24e-34 127
MS.gene56338.t1 MTR_5g088230 57.955 88 37 0 235 322 182 269 1.09e-22 95.5
MS.gene56338.t1 MTR_2g086390 34.256 289 127 9 23 294 11 253 1.18e-33 125
MS.gene56338.t1 MTR_2g086390 34.256 289 127 9 23 294 11 253 1.38e-33 125
MS.gene56338.t1 MTR_5g088230 46.629 178 70 7 1 170 1 161 3.52e-33 123
MS.gene56338.t1 MTR_5g088230 57.955 88 37 0 235 322 177 264 1.13e-22 95.5
MS.gene56338.t1 MTR_7g104480 33.333 354 152 10 26 299 45 394 1.02e-29 117
MS.gene56338.t1 MTR_2g086340 36.271 295 152 10 12 294 14 284 1.22e-27 110
MS.gene56338.t1 MTR_3g101780 48.361 122 56 2 19 138 26 142 1.02e-26 109
MS.gene56338.t1 MTR_3g101780 63.333 60 22 0 238 297 339 398 7.17e-17 81.3
MS.gene56338.t1 MTR_4g094390 47.191 89 45 1 210 296 87 175 1.36e-14 71.6
MS.gene56338.t1 MTR_5g060990 36.090 133 75 3 16 142 8 136 1.44e-12 67.8
MS.gene56338.t1 MTR_8g075130 46.988 83 40 2 243 322 97 178 1.51e-12 65.5
MS.gene56338.t1 MTR_1g098590 62.745 51 19 0 246 296 157 207 2.83e-12 65.9
MS.gene56338.t1 MTR_7g015990 68.000 50 13 1 251 297 120 169 3.04e-12 65.1
MS.gene56338.t1 MTR_1g098590 62.745 51 19 0 246 296 157 207 3.76e-12 65.1
MS.gene56338.t1 MTR_1g098590 62.745 51 19 0 246 296 157 207 4.50e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56338.t1 AT3G56850 52.396 313 120 8 14 322 10 297 5.07e-88 266
MS.gene56338.t1 AT2G41070 48.418 316 101 10 10 322 15 271 1.11e-74 231
MS.gene56338.t1 AT2G41070 48.418 316 101 10 10 322 6 262 1.37e-74 230
MS.gene56338.t1 AT2G41070 48.418 316 101 10 10 322 6 262 1.37e-74 230
MS.gene56338.t1 AT2G41070 48.418 316 101 10 10 322 6 262 1.37e-74 230
MS.gene56338.t1 AT2G41070 47.931 290 89 10 10 296 6 236 3.73e-64 203
MS.gene56338.t1 AT1G49720 34.320 338 162 7 18 296 21 357 6.33e-45 158
MS.gene56338.t1 AT1G49720 34.320 338 162 7 18 296 21 357 6.54e-45 157
MS.gene56338.t1 AT1G49720 34.320 338 162 7 18 296 21 357 6.54e-45 157
MS.gene56338.t1 AT2G36270 32.593 405 168 12 12 315 30 430 3.01e-36 135
MS.gene56338.t1 AT2G36270 32.593 405 168 12 12 315 30 430 3.01e-36 135
MS.gene56338.t1 AT2G36270 33.244 373 154 11 12 293 30 398 6.70e-35 132
MS.gene56338.t1 AT3G44460 37.171 304 134 13 14 294 22 291 2.30e-29 115
MS.gene56338.t1 AT3G19290 43.046 151 65 3 9 138 21 171 3.16e-25 105
MS.gene56338.t1 AT3G19290 43.046 151 65 3 9 138 21 171 3.25e-25 105
MS.gene56338.t1 AT3G19290 37.589 141 63 4 178 296 260 397 2.17e-14 73.9
MS.gene56338.t1 AT3G19290 43.046 151 65 3 9 138 21 171 4.10e-25 105
MS.gene56338.t1 AT3G19290 37.589 141 63 4 178 296 260 397 2.96e-14 73.6
MS.gene56338.t1 AT3G19290 43.046 151 65 3 9 138 21 171 4.15e-25 105
MS.gene56338.t1 AT3G19290 37.589 141 63 4 178 296 260 397 3.04e-14 73.6
MS.gene56338.t1 AT3G19290 43.046 151 65 3 9 138 21 171 4.15e-25 105
MS.gene56338.t1 AT3G19290 37.589 141 63 4 178 296 260 397 3.04e-14 73.6
MS.gene56338.t1 AT5G42910 28.487 337 162 10 20 295 20 338 8.23e-23 97.8
MS.gene56338.t1 AT4G34000 34.715 193 77 6 19 171 26 209 8.64e-22 95.9
MS.gene56338.t1 AT4G34000 60.000 60 24 0 237 296 359 418 1.83e-15 77.0
MS.gene56338.t1 AT4G34000 34.197 193 78 5 19 171 26 209 1.08e-21 95.5
MS.gene56338.t1 AT4G34000 60.000 65 25 1 237 301 359 422 2.49e-15 76.6
MS.gene56338.t1 AT4G34000 34.197 193 78 5 19 171 26 209 1.08e-21 95.5
MS.gene56338.t1 AT4G34000 60.000 65 25 1 237 301 359 422 2.49e-15 76.6
MS.gene56338.t1 AT4G34000 34.197 193 78 5 19 171 26 209 1.08e-21 95.5
MS.gene56338.t1 AT4G34000 60.000 65 25 1 237 301 359 422 2.49e-15 76.6
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 21 151 2.55e-21 93.6
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 21 151 2.55e-21 93.6
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 21 151 4.25e-21 93.2
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 21 151 4.25e-21 93.2
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 21 151 4.25e-21 93.2
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 21 151 4.25e-21 93.2
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 21 151 4.56e-21 93.2
MS.gene56338.t1 AT1G45249 48.958 96 30 3 237 320 326 414 2.17e-17 82.8
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 36 166 4.62e-21 93.6
MS.gene56338.t1 AT1G45249 48.958 96 30 3 237 320 341 429 3.05e-17 82.4
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 36 166 4.62e-21 93.6
MS.gene56338.t1 AT1G45249 48.958 96 30 3 237 320 341 429 3.05e-17 82.4
MS.gene56338.t1 AT1G45249 41.791 134 60 3 20 138 21 151 6.13e-21 93.2
MS.gene56338.t1 AT1G45249 43.925 107 30 4 237 320 326 425 1.69e-14 74.3
MS.gene56338.t1 AT4G35900 50.000 86 41 2 237 322 202 285 6.53e-16 77.0
MS.gene56338.t1 AT1G03970 31.863 204 83 6 96 297 85 234 2.26e-15 75.5
MS.gene56338.t1 AT5G44080 31.250 240 102 10 96 319 120 312 5.41e-15 74.7
MS.gene56338.t1 AT2G17770 47.674 86 43 2 237 322 112 195 7.63e-14 69.7

Find 74 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCGACGAAGCTGGCATTT+AGG 0.252772 3.1:+6562649 None:intergenic
AGAAGACGGTTGATGAAGTT+TGG 0.321664 3.1:-6564349 MS.gene56338:CDS
GATTCAACAACACTGACTTT+AGG 0.341594 3.1:+6564176 None:intergenic
TTTGGGTGAGATGACATTAG+AGG 0.364587 3.1:-6564267 MS.gene56338:CDS
TCAACCGTCTTCTTGCTTAA+CGG 0.378968 3.1:+6564359 None:intergenic
ACGAAGCTGGCATTTAGGTT+CGG 0.387515 3.1:+6562654 None:intergenic
TCAAGAGATGCAGTCTACTT+TGG 0.394291 3.1:-6564285 MS.gene56338:CDS
GCCACCTGACCATCTGTATA+CGG 0.395127 3.1:+6563993 None:intergenic
CGAAGCTGGCATTTAGGTTC+GGG 0.399153 3.1:+6562655 None:intergenic
CATGGCAGCCGGTGCTCCAT+CGG 0.400873 3.1:-6564024 MS.gene56338:CDS
GGTTAAAGCAGGCGTTGTTT+CGG 0.403853 3.1:-6564237 MS.gene56338:CDS
CAACCTAATCTGTCGTTAAC+CGG 0.406252 3.1:-6564383 MS.gene56338:CDS
CAAGAGATGCAGTCTACTTT+GGG 0.419918 3.1:-6564284 MS.gene56338:CDS
CAGAATCACTTAGGTGACTT+AGG 0.427650 3.1:-6564530 MS.gene56338:CDS
AGAAGAGGATGATTAAGAAT+CGG 0.435534 3.1:-6563872 MS.gene56338:CDS
TCAAGGTTCATACTACTTAG+TGG 0.444599 3.1:+6564503 None:intergenic
CCAGAGGCTGGAATTGCGGT+TGG 0.448828 3.1:+6564594 None:intergenic
ATGGCAGCCGGTGCTCCATC+GGG 0.453933 3.1:-6564023 MS.gene56338:CDS
GAAGAGGATGATTAAGAATC+GGG 0.454965 3.1:-6563871 MS.gene56338:CDS
CAGTCATTGCACATGGCAGC+CGG 0.472274 3.1:-6564035 MS.gene56338:CDS
CAAAGTCTCGCGTCTGGAAG+AGG 0.475416 3.1:-6563686 MS.gene56338:CDS
CGCGCCAGAGGCTGGAATTG+CGG 0.479085 3.1:+6564590 None:intergenic
GGACCGGTTAACGACAGATT+AGG 0.482657 3.1:+6564380 None:intergenic
GCGCTCAAGAGCAAGGAAAC+AGG 0.483729 3.1:-6563838 MS.gene56338:intron
GGAGATCAAAGTCTCGCGTC+TGG 0.487266 3.1:-6563692 MS.gene56338:CDS
CCAACCGCAATTCCAGCCTC+TGG 0.504611 3.1:-6564594 MS.gene56338:CDS
GATGAAGTTCAGAATCACTT+AGG 0.504785 3.1:-6564539 MS.gene56338:CDS
TCTGAACTTCATCAAGGGTA+AGG 0.505070 3.1:+6564549 None:intergenic
GTCCTCTCAATCATGTCCTC+CGG 0.505376 3.1:+6563909 None:intergenic
ATCTGCGAGAAAGCGGGGAC+CGG 0.507079 3.1:-6563928 MS.gene56338:CDS
CGTCTTCTTGCTTAACGGAC+CGG 0.507684 3.1:+6564364 None:intergenic
TGGCATTTAGGTTCGGGTGG+TGG 0.513608 3.1:+6562661 None:intergenic
TCAGATAAGTTTCCTACCAC+TGG 0.525861 3.1:+6563960 None:intergenic
GACTGAGCTATGATCTGGCT+CGG 0.527606 3.1:+6564053 None:intergenic
CTGTTGAGAGGAAGCAGAAG+AGG 0.527853 3.1:-6563887 MS.gene56338:CDS
TACAGATGGTCAGGTGGCGT+TGG 0.529554 3.1:-6563988 MS.gene56338:CDS
ACAGAAATCTGCGAGAAAGC+GGG 0.534375 3.1:-6563934 MS.gene56338:CDS
AACGCCGCCCGATGGAGCAC+CGG 0.535069 3.1:+6564016 None:intergenic
AACGAGGACACAGCGCAAGC+CGG 0.540740 3.1:-6564425 MS.gene56338:CDS
AGTGATTCTGAACTTCATCA+AGG 0.543380 3.1:+6564543 None:intergenic
CTGCTGCGCGCTCAAGAGCA+AGG 0.547968 3.1:-6563845 MS.gene56338:CDS
CGCAATTCCAGCCTCTGGCG+CGG 0.552340 3.1:-6564589 MS.gene56338:CDS
CGTTCCGTATACAGATGGTC+AGG 0.552569 3.1:-6563997 MS.gene56338:CDS
TGCTGTGGATGCTGATAGTG+TGG 0.563676 3.1:+6564098 None:intergenic
TTAGGCATACACAACTGAGT+TGG 0.564109 3.1:-6563713 MS.gene56338:intron
TGCGAGAAAGCGGGGACCGG+AGG 0.566566 3.1:-6563925 MS.gene56338:CDS
GGCAAACCAATCAATTCGCA+TGG 0.566719 3.1:-6564450 MS.gene56338:CDS
CACAGAAATCTGCGAGAAAG+CGG 0.574514 3.1:-6563935 MS.gene56338:CDS
CTGATGATACGCGACGAAGC+TGG 0.577434 3.1:+6562641 None:intergenic
TGAAAAGCTGAGGAAAGAGA+AGG 0.578797 3.1:-6563659 MS.gene56338:intron
GCATCCACAGCAAAGTGTGA+TGG 0.583686 3.1:-6564087 MS.gene56338:CDS
AGCTGGCATTTAGGTTCGGG+TGG 0.592805 3.1:+6562658 None:intergenic
GTATACGGAACGCCGCCCGA+TGG 0.597098 3.1:+6564008 None:intergenic
GCAATGACTGAGCTATGATC+TGG 0.599628 3.1:+6564048 None:intergenic
TACTGTATCCACGGACCATG+TGG 0.602459 3.1:+6564128 None:intergenic
ACAACACTGACTTTAGGAGT+AGG 0.608724 3.1:+6564182 None:intergenic
ATCAATTCGCATGGAAAACG+AGG 0.609101 3.1:-6564441 MS.gene56338:CDS
GTGATTCTGAACTTCATCAA+GGG 0.610620 3.1:+6564544 None:intergenic
GCAGCCGGTGCTCCATCGGG+CGG 0.611291 3.1:-6564020 MS.gene56338:CDS
CATAGCTCAGTCATTGCACA+TGG 0.615121 3.1:-6564042 MS.gene56338:CDS
GACCGGAGGACATGATTGAG+AGG 0.620098 3.1:-6563911 MS.gene56338:CDS
GCGTTGGCTTCACCAGTGGT+AGG 0.620523 3.1:-6563972 MS.gene56338:CDS
GTCGCCATCACACTTTGCTG+TGG 0.628005 3.1:+6564083 None:intergenic
GGCGGCGTTCCGTATACAGA+TGG 0.633362 3.1:-6564002 MS.gene56338:CDS
AAGAGGAAAATGAAAAGCTG+AGG 0.635284 3.1:-6563669 MS.gene56338:CDS
GGTTGTGCATACTGTATCCA+CGG 0.641304 3.1:+6564119 None:intergenic
TGATTGAGAGGACTGTTGAG+AGG 0.642725 3.1:-6563899 MS.gene56338:CDS
GGTGGCGTTGGCTTCACCAG+TGG 0.643645 3.1:-6563976 MS.gene56338:CDS
CAGAAATCTGCGAGAAAGCG+GGG 0.644702 3.1:-6563933 MS.gene56338:CDS
CCAACAAAACAACGATCATG+AGG 0.650306 3.1:-6564318 MS.gene56338:CDS
TCCGTATACAGATGGTCAGG+TGG 0.656234 3.1:-6563994 MS.gene56338:CDS
CGGTCCGTTAAGCAAGAAGA+CGG 0.656636 3.1:-6564363 MS.gene56338:CDS
ACAAAACAACGATCATGAGG+AGG 0.694318 3.1:-6564315 MS.gene56338:CDS
GGACCATGTGGAGAAAACTG+TGG 0.769588 3.1:+6564140 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCAATATCTAAACATT+TGG - chr3.1:6564287-6564306 MS.gene56338:CDS 15.0%
!! ATTTACATTCTTAATTCTTA+TGG - chr3.1:6563757-6563776 MS.gene56338:intron 15.0%
!!! ATTAACAAAAAGATTTTCAA+TGG + chr3.1:6563660-6563679 None:intergenic 15.0%
!!! TTATTTTCTCAAATTATTAC+CGG - chr3.1:6564183-6564202 MS.gene56338:CDS 15.0%
!! AAATTAGAACTTCAATAACA+TGG + chr3.1:6563477-6563496 None:intergenic 20.0%
!! TACTTAATATCAAGAAACTA+AGG + chr3.1:6563698-6563717 None:intergenic 20.0%
!! TATTCTGATATTTCATGTAT+TGG - chr3.1:6563986-6564005 MS.gene56338:CDS 20.0%
!! TGAAATATCAGAATAATTCT+AGG + chr3.1:6563981-6564000 None:intergenic 20.0%
!! TTGATTGTACTATATAAACA+AGG + chr3.1:6564330-6564349 None:intergenic 20.0%
!! TTTGCTTAAAAGTTATAGTT+TGG - chr3.1:6563632-6563651 MS.gene56338:intron 20.0%
!!! ACAAATTCAAATTTTTGGAA+TGG - chr3.1:6564476-6564495 MS.gene56338:CDS 20.0%
!!! ATGCTACAAATTCAAATTTT+TGG - chr3.1:6564471-6564490 MS.gene56338:CDS 20.0%
!!! GAAATTTGAAATCAGTAAAT+TGG + chr3.1:6564273-6564292 None:intergenic 20.0%
!!! TACTTATTGACTGTTATTAT+TGG - chr3.1:6564046-6564065 MS.gene56338:CDS 20.0%
! AATACATATGAAGGATTGAA+AGG + chr3.1:6564084-6564103 None:intergenic 25.0%
! AATGAGTAAAAAGATCATGA+AGG - chr3.1:6564020-6564039 MS.gene56338:CDS 25.0%
! ATGGAAAAAGTTGTTTACTT+GGG + chr3.1:6563514-6563533 None:intergenic 25.0%
! CTAATTACAGTTATAATCCA+TGG + chr3.1:6563533-6563552 None:intergenic 25.0%
! GCAACAAGATTAATAAACAA+AGG + chr3.1:6564402-6564421 None:intergenic 25.0%
! TCTTAATTCTTATGGTGTTT+GGG - chr3.1:6563765-6563784 MS.gene56338:intron 25.0%
! TTCTTAATTCTTATGGTGTT+TGG - chr3.1:6563764-6563783 MS.gene56338:intron 25.0%
!! ATCTCAATTTAGTTTCTGTA+CGG - chr3.1:6563720-6563739 MS.gene56338:intron 25.0%
!! CATGGATTATAACTGTAATT+AGG - chr3.1:6563531-6563550 MS.gene56338:intron 25.0%
!! TTACTGCTTAGAATTTTCTT+TGG - chr3.1:6563824-6563843 MS.gene56338:intron 25.0%
AGAAGAGGATGATTAAGAAT+CGG - chr3.1:6563390-6563409 MS.gene56338:intron 30.0%
AGTGTCAGAAATACATATGA+AGG + chr3.1:6564093-6564112 None:intergenic 30.0%
CATGGAAAAAGTTGTTTACT+TGG + chr3.1:6563515-6563534 None:intergenic 30.0%
TGATATTGACACATAAACAC+CGG + chr3.1:6564205-6564224 None:intergenic 30.0%
TTGGAATGGATGTATCTTTA+TGG - chr3.1:6564490-6564509 MS.gene56338:CDS 30.0%
TTTCTGACACTTCAAATTCA+AGG - chr3.1:6564102-6564121 MS.gene56338:CDS 30.0%
! CTGATATTTCATGTATTGGT+TGG - chr3.1:6563990-6564009 MS.gene56338:CDS 30.0%
! TTTTGCATTAAGCATTTGGA+TGG - chr3.1:6564443-6564462 MS.gene56338:CDS 30.0%
!! CAAGTAAACAACTTTTTCCA+TGG - chr3.1:6563513-6563532 MS.gene56338:intron 30.0%
!!! GATGACATTAGAGGATTTTT+TGG - chr3.1:6563004-6563023 MS.gene56338:intron 30.0%
!!! TTGCATAGTGTTTTTTGAAG+AGG - chr3.1:6564418-6564437 MS.gene56338:CDS 30.0%
AAGAGGAAAATGAAAAGCTG+AGG - chr3.1:6563593-6563612 MS.gene56338:intron 35.0%
AAGTAAGCACAAGACAGTAA+AGG + chr3.1:6563866-6563885 None:intergenic 35.0%
ACGTTGAAAAACAACTTGTC+CGG + chr3.1:6562859-6562878 None:intergenic 35.0%
AGTAAGCACAAGACAGTAAA+GGG + chr3.1:6563865-6563884 None:intergenic 35.0%
AGTGATTCTGAACTTCATCA+AGG + chr3.1:6562722-6562741 None:intergenic 35.0%
AGTTGTTTACTTGGGAGAAA+CGG + chr3.1:6563506-6563525 None:intergenic 35.0%
GAAATTGTGCACTTTGATGT+TGG - chr3.1:6563787-6563806 MS.gene56338:intron 35.0%
GAAGAGGATGATTAAGAATC+GGG - chr3.1:6563391-6563410 MS.gene56338:intron 35.0%
GATGAAGTTCAGAATCACTT+AGG - chr3.1:6562723-6562742 MS.gene56338:intron 35.0%
GTAAAGGGTCACATATTCTA+TGG + chr3.1:6563850-6563869 None:intergenic 35.0%
GTGATTCTGAACTTCATCAA+GGG + chr3.1:6562721-6562740 None:intergenic 35.0%
TCAAGGTTCATACTACTTAG+TGG + chr3.1:6562762-6562781 None:intergenic 35.0%
TGTCAATATCATGTCAGTGT+CGG + chr3.1:6564140-6564159 None:intergenic 35.0%
! ACGAGCTTCTGAAAAATGTA+TGG - chr3.1:6562781-6562800 MS.gene56338:intron 35.0%
! GAAAAATGTATGGACTGTTG+AGG - chr3.1:6562791-6562810 MS.gene56338:intron 35.0%
! GGCATTTTGCATTAAGCATT+TGG - chr3.1:6564439-6564458 MS.gene56338:CDS 35.0%
! GTTTTACATACTCAACTTGC+AGG - chr3.1:6564552-6564571 MS.gene56338:CDS 35.0%
!! ACTGTCTTGTGCTTACTTTT+AGG - chr3.1:6563868-6563887 MS.gene56338:CDS 35.0%
!! GATTCAACAACACTGACTTT+AGG + chr3.1:6563089-6563108 None:intergenic 35.0%
!!! GAGGATTTTTTGGTTAAAGC+AGG - chr3.1:6563014-6563033 MS.gene56338:intron 35.0%
ACAAAACAACGATCATGAGG+AGG - chr3.1:6562947-6562966 MS.gene56338:intron 40.0%
ATCAATTCGCATGGAAAACG+AGG - chr3.1:6562821-6562840 MS.gene56338:intron 40.0%
CAACCTAATCTGTCGTTAAC+CGG - chr3.1:6562879-6562898 MS.gene56338:intron 40.0%
CAAGAGATGCAGTCTACTTT+GGG - chr3.1:6562978-6562997 MS.gene56338:intron 40.0%
CAGAATCACTTAGGTGACTT+AGG - chr3.1:6562732-6562751 MS.gene56338:intron 40.0%
CCAACAAAACAACGATCATG+AGG - chr3.1:6562944-6562963 MS.gene56338:intron 40.0%
CTTCAAATTCAAGGCGTGTT+TGG - chr3.1:6564111-6564130 MS.gene56338:CDS 40.0%
GTTGTTTACTTGGGAGAAAC+GGG + chr3.1:6563505-6563524 None:intergenic 40.0%
TCAACCGTCTTCTTGCTTAA+CGG + chr3.1:6562906-6562925 None:intergenic 40.0%
TCAAGAGATGCAGTCTACTT+TGG - chr3.1:6562977-6562996 MS.gene56338:intron 40.0%
TCAGATAAGTTTCCTACCAC+TGG + chr3.1:6563305-6563324 None:intergenic 40.0%
TCTGAACTTCATCAAGGGTA+AGG + chr3.1:6562716-6562735 None:intergenic 40.0%
TGAAAAGCTGAGGAAAGAGA+AGG - chr3.1:6563603-6563622 MS.gene56338:intron 40.0%
TGTCTCTGTCAACACTTCAT+AGG - chr3.1:6564231-6564250 MS.gene56338:CDS 40.0%
TTAGGCATACACAACTGAGT+TGG - chr3.1:6563549-6563568 MS.gene56338:intron 40.0%
TTTGGGTGAGATGACATTAG+AGG - chr3.1:6562995-6563014 MS.gene56338:intron 40.0%
! CGTTTTCCATGCGAATTGAT+TGG + chr3.1:6562821-6562840 None:intergenic 40.0%
!! ACAACACTGACTTTAGGAGT+AGG + chr3.1:6563083-6563102 None:intergenic 40.0%
!! AGAAGACGGTTGATGAAGTT+TGG - chr3.1:6562913-6562932 MS.gene56338:intron 40.0%
!! CATTTTTCAGAAGCTCGTCA+AGG + chr3.1:6562779-6562798 None:intergenic 40.0%
!! CCTCATGATCGTTGTTTTGT+TGG + chr3.1:6562947-6562966 None:intergenic 40.0%
ACAGAAATCTGCGAGAAAGC+GGG - chr3.1:6563328-6563347 MS.gene56338:intron 45.0%
CACAGAAATCTGCGAGAAAG+CGG - chr3.1:6563327-6563346 MS.gene56338:intron 45.0%
CATAGCTCAGTCATTGCACA+TGG - chr3.1:6563220-6563239 MS.gene56338:intron 45.0%
GCAATGACTGAGCTATGATC+TGG + chr3.1:6563217-6563236 None:intergenic 45.0%
GGCAAACCAATCAATTCGCA+TGG - chr3.1:6562812-6562831 MS.gene56338:intron 45.0%
GGTTGTGCATACTGTATCCA+CGG + chr3.1:6563146-6563165 None:intergenic 45.0%
TGATTGAGAGGACTGTTGAG+AGG - chr3.1:6563363-6563382 MS.gene56338:intron 45.0%
! ACGAAGCTGGCATTTAGGTT+CGG + chr3.1:6564611-6564630 None:intergenic 45.0%
! GGTTAAAGCAGGCGTTGTTT+CGG - chr3.1:6563025-6563044 MS.gene56338:intron 45.0%
! TTGCCACAGTTTTCTCCACA+TGG - chr3.1:6563119-6563138 MS.gene56338:intron 45.0%
!! TGAAGTGTTGACAGAGACAC+AGG + chr3.1:6564230-6564249 None:intergenic 45.0%
CAGAAATCTGCGAGAAAGCG+GGG - chr3.1:6563329-6563348 MS.gene56338:intron 50.0%
CGGTCCGTTAAGCAAGAAGA+CGG - chr3.1:6562899-6562918 MS.gene56338:intron 50.0%
CGTTCCGTATACAGATGGTC+AGG - chr3.1:6563265-6563284 MS.gene56338:intron 50.0%
CTGTTGAGAGGAAGCAGAAG+AGG - chr3.1:6563375-6563394 MS.gene56338:intron 50.0%
GACTGAGCTATGATCTGGCT+CGG + chr3.1:6563212-6563231 None:intergenic 50.0%
GCATCCACAGCAAAGTGTGA+TGG - chr3.1:6563175-6563194 MS.gene56338:intron 50.0%
GCCACCTGACCATCTGTATA+CGG + chr3.1:6563272-6563291 None:intergenic 50.0%
GGACCATGTGGAGAAAACTG+TGG + chr3.1:6563125-6563144 None:intergenic 50.0%
GGACCGGTTAACGACAGATT+AGG + chr3.1:6562885-6562904 None:intergenic 50.0%
GTCCTCTCAATCATGTCCTC+CGG + chr3.1:6563356-6563375 None:intergenic 50.0%
TACTGTATCCACGGACCATG+TGG + chr3.1:6563137-6563156 None:intergenic 50.0%
TCCGTATACAGATGGTCAGG+TGG - chr3.1:6563268-6563287 MS.gene56338:intron 50.0%
! AGTTTTCTCCACATGGTCCG+TGG - chr3.1:6563126-6563145 MS.gene56338:intron 50.0%
! ATTGAATTTTGCCGCGCCAG+AGG + chr3.1:6562687-6562706 None:intergenic 50.0%
! CGAAGCTGGCATTTAGGTTC+GGG + chr3.1:6564610-6564629 None:intergenic 50.0%
! CGTCTTCTTGCTTAACGGAC+CGG + chr3.1:6562901-6562920 None:intergenic 50.0%
! TGCTGTGGATGCTGATAGTG+TGG + chr3.1:6563167-6563186 None:intergenic 50.0%
ACGCGACGAAGCTGGCATTT+AGG + chr3.1:6564616-6564635 None:intergenic 55.0%
CAAAGTCTCGCGTCTGGAAG+AGG - chr3.1:6563576-6563595 MS.gene56338:intron 55.0%
CAGTCATTGCACATGGCAGC+CGG - chr3.1:6563227-6563246 MS.gene56338:intron 55.0%
CTGATGATACGCGACGAAGC+TGG + chr3.1:6564624-6564643 None:intergenic 55.0%
GACCGGAGGACATGATTGAG+AGG - chr3.1:6563351-6563370 MS.gene56338:intron 55.0%
GCGCTCAAGAGCAAGGAAAC+AGG - chr3.1:6563424-6563443 MS.gene56338:intron 55.0%
GGAGATCAAAGTCTCGCGTC+TGG - chr3.1:6563570-6563589 MS.gene56338:intron 55.0%
GTCGCCATCACACTTTGCTG+TGG + chr3.1:6563182-6563201 None:intergenic 55.0%
TACAGATGGTCAGGTGGCGT+TGG - chr3.1:6563274-6563293 MS.gene56338:intron 55.0%
! AGCTGGCATTTAGGTTCGGG+TGG + chr3.1:6564607-6564626 None:intergenic 55.0%
! TGGCATTTAGGTTCGGGTGG+TGG + chr3.1:6564604-6564623 None:intergenic 55.0%
AACGAGGACACAGCGCAAGC+CGG - chr3.1:6562837-6562856 MS.gene56338:intron 60.0%
ATCTGCGAGAAAGCGGGGAC+CGG - chr3.1:6563334-6563353 MS.gene56338:intron 60.0%
CCAACCGCAATTCCAGCCTC+TGG - chr3.1:6562668-6562687 MS.gene56338:CDS 60.0%
CCAGAGGCTGGAATTGCGGT+TGG + chr3.1:6562671-6562690 None:intergenic 60.0%
GGCGGCGTTCCGTATACAGA+TGG - chr3.1:6563260-6563279 MS.gene56338:intron 60.0%
! AATTTTGCCGCGCCAGAGGC+TGG + chr3.1:6562683-6562702 None:intergenic 60.0%
!! GCGTTGGCTTCACCAGTGGT+AGG - chr3.1:6563290-6563309 MS.gene56338:intron 60.0%
ATGGCAGCCGGTGCTCCATC+GGG - chr3.1:6563239-6563258 MS.gene56338:intron 65.0%
CATGGCAGCCGGTGCTCCAT+CGG - chr3.1:6563238-6563257 MS.gene56338:intron 65.0%
CGCAATTCCAGCCTCTGGCG+CGG - chr3.1:6562673-6562692 MS.gene56338:CDS 65.0%
CGCGCCAGAGGCTGGAATTG+CGG + chr3.1:6562675-6562694 None:intergenic 65.0%
CTGCTGCGCGCTCAAGAGCA+AGG - chr3.1:6563417-6563436 MS.gene56338:intron 65.0%
GTATACGGAACGCCGCCCGA+TGG + chr3.1:6563257-6563276 None:intergenic 65.0%
!! GGTGGCGTTGGCTTCACCAG+TGG - chr3.1:6563286-6563305 MS.gene56338:intron 65.0%
AACGCCGCCCGATGGAGCAC+CGG + chr3.1:6563249-6563268 None:intergenic 70.0%
TGCGAGAAAGCGGGGACCGG+AGG - chr3.1:6563337-6563356 MS.gene56338:intron 70.0%
GCAGCCGGTGCTCCATCGGG+CGG - chr3.1:6563242-6563261 MS.gene56338:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 6562630 6564654 6562630 ID=MS.gene56338
chr3.1 mRNA 6562630 6564654 6562630 ID=MS.gene56338.t1;Parent=MS.gene56338
chr3.1 exon 6563839 6564654 6563839 ID=MS.gene56338.t1.exon1;Parent=MS.gene56338.t1
chr3.1 CDS 6563839 6564654 6563839 ID=cds.MS.gene56338.t1;Parent=MS.gene56338.t1
chr3.1 exon 6563660 6563731 6563660 ID=MS.gene56338.t1.exon2;Parent=MS.gene56338.t1
chr3.1 CDS 6563660 6563731 6563660 ID=cds.MS.gene56338.t1;Parent=MS.gene56338.t1
chr3.1 exon 6562630 6562710 6562630 ID=MS.gene56338.t1.exon3;Parent=MS.gene56338.t1
chr3.1 CDS 6562630 6562710 6562630 ID=cds.MS.gene56338.t1;Parent=MS.gene56338.t1
Gene Sequence

>MS.gene56338

ATGGGGTCTCAAGTTGTTGATGAAAGTAATAATGAAAACCAACCGCAATTCCAGCCTCTGGCGCGGCAAAATTCAATGTACAACCTTACCCTTGATGAAGTTCAGAATCACTTAGGTGACTTAGGAAAGCCACTAAGTAGTATGAACCTTGACGAGCTTCTGAAAAATGTATGGACTGTTGAGGCAAACCAATCAATTCGCATGGAAAACGAGGACACAGCGCAAGCCGGACAAGTTGTTTTTCAACGTCAACCTAATCTGTCGTTAACCGGTCCGTTAAGCAAGAAGACGGTTGATGAAGTTTGGAGAGATATCCAACAAAACAACGATCATGAGGAGGTGAAGTCTCAAGAGATGCAGTCTACTTTGGGTGAGATGACATTAGAGGATTTTTTGGTTAAAGCAGGCGTTGTTTCGGCTGCATCTTCAAATAGAAAGAATACTAATAGTCCTACTCCTAAAGTCAGTGTTGTTGAATCGAATGTAGCGTTGCCACAGTTTTCTCCACATGGTCCGTGGATACAGTATGCACAACCACACTATCAGCATCCACAGCAAAGTGTGATGGCGACTTATGTTCCGAGCCAGATCATAGCTCAGTCATTGCACATGGCAGCCGGTGCTCCATCGGGCGGCGTTCCGTATACAGATGGTCAGGTGGCGTTGGCTTCACCAGTGGTAGGAAACTTATCTGATACACAGAAATCTGCGAGAAAGCGGGGACCGGAGGACATGATTGAGAGGACTGTTGAGAGGAAGCAGAAGAGGATGATTAAGAATCGGGAATCTGCTGCGCGCTCAAGAGCAAGGAAACAGGTGAATATTTTTCTTTTTCTTTTGAATGCCATGTTATTGAAGTTCTAATTTTTTTACCCGTTTCTCCCAAGTAAACAACTTTTTCCATGGATTATAACTGTAATTAGGCATACACAACTGAGTTGGAGATCAAAGTCTCGCGTCTGGAAGAGGAAAATGAAAAGCTGAGGAAAGAGAAGGTTAGATTTTGCTTAAAAGTTATAGTTTGGATCCATTGAAAATCTTTTTGTTAATTCACTGTGCTGAATACCTTAGTTTCTTGATATTAAGTAATATCTCAATTTAGTTTCTGTACGGACATTAATTTATTTATTTACATTCTTAATTCTTATGGTGTTTGGGAAATTGTGCACTTTGATGTTGGTCTTGAATTATCAGTTACTGCTTAGAATTTTCTTTGGCCATAGAATATGTGACCCTTTACTGTCTTGTGCTTACTTTTAGGCTTACAATTCAAAGTTGCAATAAGAATATTTTATTTCTTACACAGTTAGTACTTTCATGACTGTAGTTATGCAAATTCAACTGTTTGCCTAGAATTATTCTGATATTTCATGTATTGGTTGGAAGTACTAATGAGTAAAAAGATCATGAAGGTTCTACTTATTGACTGTTATTATTGGTTGTTATTATTTCCTTTCAATCCTTCATATGTATTTCTGACACTTCAAATTCAAGGCGTGTTTGGTGTCCGACACTGACATGATATTGACACATTTGATTATATTTAATCACTTTTATTTTCTCAAATTATTACCGGTGTTTATGTGTCAATATCATGCCTGTGTCTCTGTCAACACTTCATAGGATAAGATTATCATTTACCAATTTACTGATTTCAAATTTCAATATCTAAACATTTGGATTGTTGATTCTATTCTCCTTGTTTATATAGTACAATCAAACTTATGAGTTAATAAACACAATATGTAGTTTTGTATTCAACTTCAAAACCTTTGTTTATTAATCTTGTTGCATAGTGTTTTTTGAAGAGGCATTTTGCATTAAGCATTTGGATGGTGTTAATGCTACAAATTCAAATTTTTGGAATGGATGTATCTTTATGGTCTTCGATGCATGTTTTCTTACTTGTTCTTTATTAATTTGTTTTACATACTCAACTTGCAGGAGCTTGAGAACATGCTAGTTAATGCTCCACCACCCGAACCTAAATGCCAGCTTCGTCGCGTATCATCAGCTTCATTTTGA
Protein sequence

>MS.gene56338.t1

MGSQVVDESNNENQPQFQPLARQNSMYNLTLDEVQNHLGDLGKPLSSMNLDELLKNVWTVEANQSIRMENEDTAQAGQVVFQRQPNLSLTGPLSKKTVDEVWRDIQQNNDHEEVKSQEMQSTLGEMTLEDFLVKAGVVSAASSNRKNTNSPTPKVSVVESNVALPQFSPHGPWIQYAQPHYQHPQQSVMATYVPSQIIAQSLHMAAGAPSGGVPYTDGQVALASPVVGNLSDTQKSARKRGPEDMIERTVERKQKRMIKNRESAARSRARKQAYTTELEIKVSRLEEENEKLRKEKELENMLVNAPPPEPKCQLRRVSSASF