Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56344.t1 | AES68615.2 | 76.9 | 523 | 42 | 7 | 81 | 544 | 1 | 503 | 5.80E-224 | 786.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56344.t1 | Q9SLH0 | 50.8 | 307 | 129 | 5 | 20 | 307 | 31 | 334 | 3.7e-86 | 320.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56344.t1 | G7IVH7 | 76.9 | 523 | 42 | 7 | 81 | 544 | 1 | 503 | 4.2e-224 | 786.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56344.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56344.t1 | MTR_3g010790 | 76.864 | 523 | 42 | 7 | 81 | 544 | 1 | 503 | 0.0 | 801 |
| MS.gene56344.t1 | MTR_6g060600 | 51.367 | 512 | 216 | 13 | 9 | 498 | 18 | 518 | 2.47e-155 | 459 |
| MS.gene56344.t1 | MTR_6g060600 | 61.290 | 93 | 31 | 2 | 444 | 536 | 570 | 657 | 6.48e-24 | 106 |
| MS.gene56344.t1 | MTR_6g460640 | 49.813 | 534 | 222 | 13 | 1 | 498 | 1 | 524 | 3.17e-151 | 449 |
| MS.gene56344.t1 | MTR_6g460640 | 57.282 | 103 | 39 | 2 | 434 | 536 | 564 | 661 | 3.38e-25 | 110 |
| MS.gene56344.t1 | MTR_3g078770 | 52.281 | 285 | 128 | 3 | 32 | 310 | 51 | 333 | 3.47e-103 | 323 |
| MS.gene56344.t1 | MTR_5g087790 | 51.748 | 286 | 131 | 2 | 29 | 307 | 45 | 330 | 3.17e-102 | 321 |
| MS.gene56344.t1 | MTR_2g098470 | 52.727 | 275 | 110 | 5 | 17 | 279 | 24 | 290 | 2.03e-93 | 298 |
| MS.gene56344.t1 | MTR_3g087530 | 48.193 | 249 | 124 | 3 | 33 | 276 | 32 | 280 | 2.12e-83 | 266 |
| MS.gene56344.t1 | MTR_8g091370 | 49.805 | 257 | 121 | 4 | 26 | 276 | 17 | 271 | 1.04e-80 | 259 |
| MS.gene56344.t1 | MTR_1g024420 | 65.049 | 103 | 28 | 1 | 29 | 123 | 6 | 108 | 1.19e-37 | 135 |
| MS.gene56344.t1 | MTR_3g010785 | 92.500 | 80 | 5 | 1 | 1 | 79 | 1 | 80 | 6.91e-25 | 98.6 |
| MS.gene56344.t1 | MTR_7g095580 | 37.624 | 101 | 57 | 2 | 70 | 164 | 1 | 101 | 3.82e-16 | 74.7 |
| MS.gene56344.t1 | MTR_6g060630 | 62.712 | 59 | 22 | 0 | 434 | 492 | 148 | 206 | 4.07e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56344.t1 | AT2G27050 | 53.933 | 267 | 109 | 3 | 29 | 284 | 45 | 308 | 1.78e-102 | 320 |
| MS.gene56344.t1 | AT3G20770 | 50.323 | 310 | 145 | 3 | 5 | 307 | 23 | 330 | 6.10e-102 | 320 |
| MS.gene56344.t1 | AT1G73730 | 48.882 | 313 | 134 | 7 | 16 | 310 | 23 | 327 | 1.15e-93 | 297 |
| MS.gene56344.t1 | AT1G73730 | 48.882 | 313 | 134 | 7 | 16 | 310 | 11 | 315 | 1.46e-93 | 296 |
| MS.gene56344.t1 | AT5G10120 | 45.977 | 261 | 130 | 4 | 26 | 276 | 16 | 275 | 6.57e-80 | 258 |
| MS.gene56344.t1 | AT5G21120 | 43.836 | 292 | 139 | 6 | 38 | 307 | 53 | 341 | 1.47e-75 | 248 |
| MS.gene56344.t1 | AT5G21120 | 43.836 | 292 | 139 | 6 | 38 | 307 | 53 | 341 | 1.47e-75 | 248 |
| MS.gene56344.t1 | AT5G21120 | 43.836 | 292 | 139 | 6 | 38 | 307 | 60 | 348 | 2.01e-75 | 248 |
| MS.gene56344.t1 | AT5G65100 | 42.446 | 278 | 134 | 5 | 25 | 278 | 32 | 307 | 3.69e-74 | 246 |
Find 116 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACATTGTTCTTCATATT+TGG | 0.110984 | 3.1:-6646966 | None:intergenic |
| TTCTCTTGGCCGAACAATAT+TGG | 0.200544 | 3.1:+6648548 | MS.gene56344:CDS |
| AAGGAGAAGATGTTTCTATT+TGG | 0.240323 | 3.1:+6648192 | MS.gene56344:CDS |
| GAAGAATTTAAGAATGATTC+AGG | 0.273405 | 3.1:-6647418 | None:intergenic |
| ATGCTAAGGATACAGCTATT+TGG | 0.278436 | 3.1:+6647350 | MS.gene56344:CDS |
| CTCCTGATCTTCTGAAAATT+AGG | 0.282984 | 3.1:-6647289 | None:intergenic |
| TGTTGCTGCTTCCTCCTATT+TGG | 0.284096 | 3.1:-6647666 | None:intergenic |
| CCATTTGAGGCTGCATGTTT+TGG | 0.285639 | 3.1:-6648310 | None:intergenic |
| CACATGATTTGAAGAAGGTT+TGG | 0.299071 | 3.1:+6647227 | MS.gene56344:CDS |
| TCTCTTGGCCGAACAATATT+GGG | 0.310737 | 3.1:+6648549 | MS.gene56344:CDS |
| TAACTTTGTGTTGCCACATT+AGG | 0.315473 | 3.1:-6648521 | None:intergenic |
| CAACTCCAACCATTTGGAAT+TGG | 0.333568 | 3.1:-6647693 | None:intergenic |
| TTCATCTTTAGATGAGTTGA+TGG | 0.334799 | 3.1:+6648451 | MS.gene56344:CDS |
| GATGTTCGTGGCTTCGTCTA+TGG | 0.352458 | 3.1:+6646839 | MS.gene56344:CDS |
| AGCTTCCAACTCCAACCATT+TGG | 0.359268 | 3.1:-6647699 | None:intergenic |
| CAAACCAATGATTGGCTCTT+CGG | 0.371062 | 3.1:+6646880 | MS.gene56344:CDS |
| ATTGAACCTAATATTGTATC+AGG | 0.373081 | 3.1:-6647052 | None:intergenic |
| ATCATTGGTTTGCCATTGTC+AGG | 0.373218 | 3.1:-6646869 | None:intergenic |
| CGAATCATGGTGGAAGGAAA+TGG | 0.374307 | 3.1:+6647165 | MS.gene56344:CDS |
| CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 3.1:+6647139 | MS.gene56344:CDS |
| GACCTACCTGATACAATATT+AGG | 0.387617 | 3.1:+6647046 | MS.gene56344:CDS |
| TCATATTTGGCGATTGCAGC+TGG | 0.389765 | 3.1:-6646953 | None:intergenic |
| AAGAGAAAGGCTGACCAAAT+AGG | 0.390964 | 3.1:+6647652 | MS.gene56344:CDS |
| TTCTTAAATTCTTCTTGTGT+TGG | 0.395347 | 3.1:+6647427 | MS.gene56344:CDS |
| CACAAAGTTATGATTTCTCT+TGG | 0.396627 | 3.1:+6648534 | MS.gene56344:CDS |
| TATTAATTCCCAATATTGTT+CGG | 0.401958 | 3.1:-6648557 | None:intergenic |
| GTTGGAATCATGTTGGTAAC+TGG | 0.408033 | 3.1:-6648275 | None:intergenic |
| TAGAAATTCTGCTCCATTTG+AGG | 0.408160 | 3.1:-6648323 | None:intergenic |
| GTGCACAAGAGGGCATATTA+AGG | 0.410074 | 3.1:+6645731 | MS.gene56344:CDS |
| CCAAAACATGCAGCCTCAAA+TGG | 0.411657 | 3.1:+6648310 | MS.gene56344:CDS |
| CCCTCATCACATGATGATAA+AGG | 0.413199 | 3.1:-6647520 | None:intergenic |
| TATTAGTTATGAAGAAAGAT+TGG | 0.415453 | 3.1:+6647381 | MS.gene56344:CDS |
| ACCCCAAAGAAAACATCCTT+TGG | 0.424688 | 3.1:+6647105 | MS.gene56344:CDS |
| CGGAAAATCTACGCGGTTGG+TGG | 0.429144 | 3.1:+6646900 | MS.gene56344:CDS |
| CAATCTTGTTATTGAGAGTA+GGG | 0.434145 | 3.1:+6647621 | MS.gene56344:CDS |
| GGAGTATTGTTAGACATTCC+AGG | 0.438919 | 3.1:+6647308 | MS.gene56344:CDS |
| AGGAACTAGAGACAAAGATA+TGG | 0.443648 | 3.1:+6645614 | MS.gene56344:CDS |
| GACAATGGCTCGTGCACAAG+AGG | 0.447975 | 3.1:+6645720 | MS.gene56344:CDS |
| TGAAAGTAGTTATGAGTTTG+TGG | 0.453514 | 3.1:+6647450 | MS.gene56344:CDS |
| GAAGGAAATGGGATTTAGTA+AGG | 0.462346 | 3.1:+6647177 | MS.gene56344:CDS |
| AGAAGATGTTTCTATTTGGA+TGG | 0.464894 | 3.1:+6648196 | MS.gene56344:CDS |
| CACCATGATTCGTTCCCTGT+TGG | 0.467429 | 3.1:-6647154 | None:intergenic |
| GACAATGGCAAACCAATGAT+TGG | 0.467907 | 3.1:+6646872 | MS.gene56344:CDS |
| AAAACCACATGATTTGAAGA+AGG | 0.473630 | 3.1:+6647222 | MS.gene56344:CDS |
| TGTTGCTTGATGAGCAAGTA+AGG | 0.474666 | 3.1:+6647008 | MS.gene56344:CDS |
| CAATTCCAAATGGTTGGAGT+TGG | 0.477252 | 3.1:+6647694 | MS.gene56344:CDS |
| GAAGCACCGTTATCAACGTT+GGG | 0.485553 | 3.1:-6645523 | None:intergenic |
| GGCCAACAGGGAACGAATCA+TGG | 0.488109 | 3.1:+6647152 | MS.gene56344:CDS |
| ACCAACATGATTCCAACTCC+TGG | 0.488765 | 3.1:+6648281 | MS.gene56344:CDS |
| GCAAAATAAATTCAATGCTA+AGG | 0.497897 | 3.1:+6647336 | MS.gene56344:CDS |
| CCTGTTGGCCACCATGGTGG+AGG | 0.500513 | 3.1:-6647139 | None:intergenic |
| AAAGTAAACTTTGAGGAAAA+CGG | 0.500540 | 3.1:+6646929 | MS.gene56344:CDS |
| AACCTCCATGATCATTGTCT+TGG | 0.503715 | 3.1:-6647588 | None:intergenic |
| ACATTAACGACTTCAGCATT+AGG | 0.506244 | 3.1:-6648389 | None:intergenic |
| GTACTGCAGCTTGCTGATGT+TGG | 0.509106 | 3.1:-6647753 | None:intergenic |
| GGTAGGTCATACAAGGAGTA+AGG | 0.514149 | 3.1:-6647031 | None:intergenic |
| GAATCATGGTGGAAGGAAAT+GGG | 0.515364 | 3.1:+6647166 | MS.gene56344:CDS |
| AACAATGCAAAACAAGATAA+CGG | 0.516750 | 3.1:+6645547 | MS.gene56344:CDS |
| TTGGAAAATTTGTGTGTTGA+CGG | 0.518161 | 3.1:+6647246 | MS.gene56344:CDS |
| AACAACCAATTCCAAATGGT+TGG | 0.519990 | 3.1:+6647688 | MS.gene56344:CDS |
| AAATCTACGCGGTTGGTGGA+AGG | 0.522592 | 3.1:+6646904 | MS.gene56344:CDS |
| AACTGGCACAACATGATTCA+CGG | 0.524808 | 3.1:-6648258 | None:intergenic |
| AAGTGACAATAAAACATCAC+TGG | 0.527333 | 3.1:+6645681 | MS.gene56344:CDS |
| CAAACCTTCTTCAAATCATG+TGG | 0.527454 | 3.1:-6647226 | None:intergenic |
| CAACAACAACCAATTCCAAA+TGG | 0.529692 | 3.1:+6647684 | MS.gene56344:CDS |
| TGTGGAGTTTCAACAGTGAA+TGG | 0.534015 | 3.1:+6646983 | MS.gene56344:CDS |
| CATTACCAAGACAATGATCA+TGG | 0.535851 | 3.1:+6647583 | MS.gene56344:CDS |
| GTGATCTGATTTGCAACAGC+AGG | 0.537097 | 3.1:-6647775 | None:intergenic |
| ACCTTTATCATCATGTGATG+AGG | 0.538023 | 3.1:+6647519 | MS.gene56344:CDS |
| ACAATCTTGTTATTGAGAGT+AGG | 0.541787 | 3.1:+6647620 | MS.gene56344:CDS |
| CCTTTATCATCATGTGATGA+GGG | 0.544805 | 3.1:+6647520 | MS.gene56344:CDS |
| ATGCATCCCAACGTTGATAA+CGG | 0.547251 | 3.1:+6645517 | MS.gene56344:CDS |
| GTATAATTCATGTATTGAGA+TGG | 0.547425 | 3.1:+6648223 | MS.gene56344:CDS |
| CAGAATTTCTATGATCAACA+AGG | 0.550654 | 3.1:+6648335 | MS.gene56344:CDS |
| TAGGGGTGCTAATAAGAGAA+AGG | 0.554483 | 3.1:+6647639 | MS.gene56344:CDS |
| TGAAGCACCGTTATCAACGT+TGG | 0.555762 | 3.1:-6645524 | None:intergenic |
| CTCATCTAAAGATGAATCGA+AGG | 0.557404 | 3.1:-6648444 | None:intergenic |
| TGATCATTGTCTTGGTAATG+TGG | 0.562092 | 3.1:-6647580 | None:intergenic |
| CTTCGGAAAATCTACGCGGT+TGG | 0.564527 | 3.1:+6646897 | MS.gene56344:CDS |
| AATCAGATCACTATTCATGC+AGG | 0.564840 | 3.1:+6647787 | MS.gene56344:CDS |
| AAACATAGATATGACTATTG+AGG | 0.565786 | 3.1:+6645594 | MS.gene56344:CDS |
| ACTTATTGATTCTCCTAATG+TGG | 0.567478 | 3.1:+6648508 | MS.gene56344:CDS |
| TCGTTCCCTGTTGGCCACCA+TGG | 0.567749 | 3.1:-6647145 | None:intergenic |
| CAGGTACATGTTAAAGATGG+TGG | 0.568652 | 3.1:+6646808 | MS.gene56344:intron |
| GAAGGACAAAGTAAACTTTG+AGG | 0.573836 | 3.1:+6646922 | MS.gene56344:CDS |
| GGAGGAATGCCGCTTTCCAA+AGG | 0.574058 | 3.1:-6647121 | None:intergenic |
| CTCCACCATGGTGGCCAACA+GGG | 0.575877 | 3.1:+6647140 | MS.gene56344:CDS |
| TTCCCTGTTGGCCACCATGG+TGG | 0.581079 | 3.1:-6647142 | None:intergenic |
| CGACAGGTACATGTTAAAGA+TGG | 0.589384 | 3.1:+6646805 | MS.gene56344:intron |
| TACCATGCAGGTAATGACTC+AGG | 0.590669 | 3.1:+6648167 | MS.gene56344:intron |
| TGTATCAGGTAGGTCATACA+AGG | 0.591621 | 3.1:-6647038 | None:intergenic |
| AGAAAACATCCTTTGGAAAG+CGG | 0.596755 | 3.1:+6647112 | MS.gene56344:CDS |
| GCTTGCTGATGTTGGTCAAG+AGG | 0.599308 | 3.1:-6647745 | None:intergenic |
| TCCAGGAGTTGGAATCATGT+TGG | 0.604429 | 3.1:-6648282 | None:intergenic |
| ACAATTGAAAAGAAAGACAA+TGG | 0.608503 | 3.1:+6645705 | MS.gene56344:CDS |
| AGGGAACGAATCATGGTGGA+AGG | 0.608968 | 3.1:+6647159 | MS.gene56344:CDS |
| GCAGGTAATGACTCAGGAGA+AGG | 0.617966 | 3.1:+6648173 | MS.gene56344:intron |
| AGAAAGGCTGACCAAATAGG+AGG | 0.621759 | 3.1:+6647655 | MS.gene56344:CDS |
| AGAATTTCTATGATCAACAA+GGG | 0.625036 | 3.1:+6648336 | MS.gene56344:CDS |
| GCATATCGAAGTCTCCATGT+TGG | 0.635104 | 3.1:-6647551 | None:intergenic |
| AATCTTGTTATTGAGAGTAG+GGG | 0.639924 | 3.1:+6647622 | MS.gene56344:CDS |
| TGCAAAACAAGATAACGGAA+AGG | 0.654316 | 3.1:+6645552 | MS.gene56344:CDS |
| ACAATGGCTCGTGCACAAGA+GGG | 0.658700 | 3.1:+6645721 | MS.gene56344:CDS |
| AGCTCAAAGAATCAACAACA+TGG | 0.679952 | 3.1:+6647718 | MS.gene56344:CDS |
| GCCAAATATGAAGAACAATG+TGG | 0.681837 | 3.1:+6646965 | MS.gene56344:CDS |
| GCGGCATTCCTCCACCATGG+TGG | 0.682914 | 3.1:+6647131 | MS.gene56344:CDS |
| AACCTAATATTGTATCAGGT+AGG | 0.686602 | 3.1:-6647048 | None:intergenic |
| GAATTTCTATGATCAACAAG+GGG | 0.696998 | 3.1:+6648337 | MS.gene56344:CDS |
| GGAAACAGATGATTATGATG+TGG | 0.698666 | 3.1:+6647471 | MS.gene56344:CDS |
| TATGGAGTAGTACCTGACAA+TGG | 0.702873 | 3.1:+6646857 | MS.gene56344:CDS |
| AAAGCGGCATTCCTCCACCA+TGG | 0.708484 | 3.1:+6647128 | MS.gene56344:CDS |
| TGAGGGTTCTGATACCAACA+TGG | 0.719170 | 3.1:+6647537 | MS.gene56344:CDS |
| GGCTCTTCGGAAAATCTACG+CGG | 0.742332 | 3.1:+6646893 | MS.gene56344:CDS |
| CAACAGGGAACGAATCATGG+TGG | 0.754137 | 3.1:+6647155 | MS.gene56344:CDS |
| TACCAAGACAATGATCATGG+AGG | 0.766248 | 3.1:+6647586 | MS.gene56344:CDS |
| TGGCACAACATGATTCACGG+TGG | 0.797759 | 3.1:-6648255 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATATTAAATTTAA+AGG | - | chr3.1:6646285-6646304 | None:intergenic | 0.0% |
| !! | AAAAATTAGCATAAATTAAA+AGG | + | chr3.1:6646010-6646029 | MS.gene56344:intron | 10.0% |
| !! | GTAACTAAAAATATATTATT+GGG | - | chr3.1:6645970-6645989 | None:intergenic | 10.0% |
| !! | TAACTAAAAATATATTATTG+GGG | - | chr3.1:6645969-6645988 | None:intergenic | 10.0% |
| !! | TCAATAGAAATAAAAATTAT+GGG | - | chr3.1:6645917-6645936 | None:intergenic | 10.0% |
| !! | TTCAATAGAAATAAAAATTA+TGG | - | chr3.1:6645918-6645937 | None:intergenic | 10.0% |
| !! | TTTACTTCATATTAAAATTA+TGG | - | chr3.1:6646652-6646671 | None:intergenic | 10.0% |
| !! | CAATAGAAATAAAAATTATG+GGG | - | chr3.1:6645916-6645935 | None:intergenic | 15.0% |
| !! | CCTAAAAAAATATTTGTATT+TGG | + | chr3.1:6646329-6646348 | MS.gene56344:intron | 15.0% |
| !! | GGTAACTAAAAATATATTAT+TGG | - | chr3.1:6645971-6645990 | None:intergenic | 15.0% |
| !!! | AGTCTATAATTTTTTTTTTG+AGG | - | chr3.1:6647991-6648010 | None:intergenic | 15.0% |
| !!! | CCAAATACAAATATTTTTTT+AGG | - | chr3.1:6646332-6646351 | None:intergenic | 15.0% |
| !!! | GTCTATAATTTTTTTTTTGA+GGG | - | chr3.1:6647990-6648009 | None:intergenic | 15.0% |
| !!! | TACTTAAAAACTAGTTTTTA+GGG | + | chr3.1:6647943-6647962 | MS.gene56344:intron | 15.0% |
| !!! | TTACTTAAAAACTAGTTTTT+AGG | + | chr3.1:6647942-6647961 | MS.gene56344:intron | 15.0% |
| !! | AACCACTATGTATATTAATA+TGG | + | chr3.1:6645936-6645955 | MS.gene56344:intron | 20.0% |
| !! | TATTAGTTATGAAGAAAGAT+TGG | + | chr3.1:6647381-6647400 | MS.gene56344:CDS | 20.0% |
| !! | TGTTTAATCTCTATAAAACT+AGG | - | chr3.1:6646255-6646274 | None:intergenic | 20.0% |
| !!! | ATATTTTAGTTAGTGAACTA+GGG | + | chr3.1:6646475-6646494 | MS.gene56344:intron | 20.0% |
| !!! | CCTGAAAATATTCTTTAAAA+CGG | - | chr3.1:6645856-6645875 | None:intergenic | 20.0% |
| !!! | CGTTTTAAAGAATATTTTCA+GGG | + | chr3.1:6645854-6645873 | MS.gene56344:intron | 20.0% |
| !!! | GTTTTAAAGAATATTTTCAG+GGG | + | chr3.1:6645855-6645874 | MS.gene56344:intron | 20.0% |
| !!! | TATTTTAATTCTATCTCTTG+AGG | + | chr3.1:6646388-6646407 | MS.gene56344:intron | 20.0% |
| !!! | TTTGCAAATAAATTTGTTTG+AGG | - | chr3.1:6645992-6646011 | None:intergenic | 20.0% |
| ! | AAACATAGATATGACTATTG+AGG | + | chr3.1:6645594-6645613 | MS.gene56344:CDS | 25.0% |
| ! | AACAATGCAAAACAAGATAA+CGG | + | chr3.1:6645547-6645566 | MS.gene56344:CDS | 25.0% |
| ! | ACAATTGAAAAGAAAGACAA+TGG | + | chr3.1:6645705-6645724 | MS.gene56344:CDS | 25.0% |
| ! | AGAATTTCTATGATCAACAA+GGG | + | chr3.1:6648336-6648355 | MS.gene56344:CDS | 25.0% |
| ! | AGCCATATTAATATACATAG+TGG | - | chr3.1:6645941-6645960 | None:intergenic | 25.0% |
| ! | ATTGAACCTAATATTGTATC+AGG | - | chr3.1:6647055-6647074 | None:intergenic | 25.0% |
| ! | GAAGAATTTAAGAATGATTC+AGG | - | chr3.1:6647421-6647440 | None:intergenic | 25.0% |
| ! | GCAAAATAAATTCAATGCTA+AGG | + | chr3.1:6647336-6647355 | MS.gene56344:CDS | 25.0% |
| ! | GTATAATTCATGTATTGAGA+TGG | + | chr3.1:6648223-6648242 | MS.gene56344:CDS | 25.0% |
| ! | TCAATAGTCAAACATAATAG+AGG | + | chr3.1:6646132-6646151 | MS.gene56344:intron | 25.0% |
| ! | TTCTTAAATTCTTCTTGTGT+TGG | + | chr3.1:6647427-6647446 | MS.gene56344:CDS | 25.0% |
| !! | AAAGTAAACTTTGAGGAAAA+CGG | + | chr3.1:6646929-6646948 | MS.gene56344:CDS | 25.0% |
| !! | AAGCTAGAGAAATTTTTACA+AGG | - | chr3.1:6646358-6646377 | None:intergenic | 25.0% |
| !! | AGCTAGAGAAATTTTTACAA+GGG | - | chr3.1:6646357-6646376 | None:intergenic | 25.0% |
| !! | TTTTTCATATGTAAGTAGCT+CGG | - | chr3.1:6648060-6648079 | None:intergenic | 25.0% |
| !!! | AAATCATGTGGTTTTTTGTA+TGG | - | chr3.1:6647217-6647236 | None:intergenic | 25.0% |
| !!! | CATATTTTAGTTAGTGAACT+AGG | + | chr3.1:6646474-6646493 | MS.gene56344:intron | 25.0% |
| !!! | CCGTTTTAAAGAATATTTTC+AGG | + | chr3.1:6645853-6645872 | MS.gene56344:intron | 25.0% |
| !!! | GGATCATTTTCAAGTTTAAT+TGG | + | chr3.1:6646442-6646461 | MS.gene56344:intron | 25.0% |
| AAAACCACATGATTTGAAGA+AGG | + | chr3.1:6647222-6647241 | MS.gene56344:CDS | 30.0% | |
| AACCTAATATTGTATCAGGT+AGG | - | chr3.1:6647051-6647070 | None:intergenic | 30.0% | |
| AAGTCAAAGTTCTCAAAATC+GGG | - | chr3.1:6646739-6646758 | None:intergenic | 30.0% | |
| AAGTGACAATAAAACATCAC+TGG | + | chr3.1:6645681-6645700 | MS.gene56344:CDS | 30.0% | |
| ATGCATGACAAATGTAGATA+GGG | - | chr3.1:6647902-6647921 | None:intergenic | 30.0% | |
| CAAGTCAAAGTTCTCAAAAT+CGG | - | chr3.1:6646740-6646759 | None:intergenic | 30.0% | |
| CACAAAGTTATGATTTCTCT+TGG | + | chr3.1:6648534-6648553 | MS.gene56344:CDS | 30.0% | |
| CAGAATTTCTATGATCAACA+AGG | + | chr3.1:6648335-6648354 | MS.gene56344:CDS | 30.0% | |
| GAAATCGAATCTGATAAACT+AGG | - | chr3.1:6646555-6646574 | None:intergenic | 30.0% | |
| GAATTTCTATGATCAACAAG+GGG | + | chr3.1:6648337-6648356 | MS.gene56344:CDS | 30.0% | |
| TCCACATTGTTCTTCATATT+TGG | - | chr3.1:6646969-6646988 | None:intergenic | 30.0% | |
| TGAAAGTAGTTATGAGTTTG+TGG | + | chr3.1:6647450-6647469 | MS.gene56344:CDS | 30.0% | |
| TTAAACTTGAAAATGATCCC+TGG | - | chr3.1:6646441-6646460 | None:intergenic | 30.0% | |
| TTGGAAAATTTGTGTGTTGA+CGG | + | chr3.1:6647246-6647265 | MS.gene56344:CDS | 30.0% | |
| ! | AAGGAGAAGATGTTTCTATT+TGG | + | chr3.1:6648192-6648211 | MS.gene56344:CDS | 30.0% |
| ! | AGAAGATGTTTCTATTTGGA+TGG | + | chr3.1:6648196-6648215 | MS.gene56344:CDS | 30.0% |
| ! | TTCATCTTTAGATGAGTTGA+TGG | + | chr3.1:6648451-6648470 | MS.gene56344:CDS | 30.0% |
| ! | TTCCAAAGGATGTTTTCTTT+GGG | - | chr3.1:6647110-6647129 | None:intergenic | 30.0% |
| ! | TTTCCAAAGGATGTTTTCTT+TGG | - | chr3.1:6647111-6647130 | None:intergenic | 30.0% |
| !! | AATCTTGTTATTGAGAGTAG+GGG | + | chr3.1:6647622-6647641 | MS.gene56344:CDS | 30.0% |
| !! | ACAATCTTGTTATTGAGAGT+AGG | + | chr3.1:6647620-6647639 | MS.gene56344:CDS | 30.0% |
| !! | ACTTATTGATTCTCCTAATG+TGG | + | chr3.1:6648508-6648527 | MS.gene56344:CDS | 30.0% |
| !! | CAATCTTGTTATTGAGAGTA+GGG | + | chr3.1:6647621-6647640 | MS.gene56344:CDS | 30.0% |
| AAAATCGCAAGTTAAAGTCC+AGG | + | chr3.1:6646420-6646439 | MS.gene56344:intron | 35.0% | |
| AAATCGCAAGTTAAAGTCCA+GGG | + | chr3.1:6646421-6646440 | MS.gene56344:intron | 35.0% | |
| AACAACCAATTCCAAATGGT+TGG | + | chr3.1:6647688-6647707 | MS.gene56344:CDS | 35.0% | |
| AACGGAAAGGAAAAAGAAGA+AGG | + | chr3.1:6645565-6645584 | MS.gene56344:CDS | 35.0% | |
| AATCAGATCACTATTCATGC+AGG | + | chr3.1:6647787-6647806 | MS.gene56344:CDS | 35.0% | |
| ACATTAACGACTTCAGCATT+AGG | - | chr3.1:6648392-6648411 | None:intergenic | 35.0% | |
| ACCTTTATCATCATGTGATG+AGG | + | chr3.1:6647519-6647538 | MS.gene56344:CDS | 35.0% | |
| ACTATTCATGCAGGTAATCA+TGG | + | chr3.1:6647796-6647815 | MS.gene56344:intron | 35.0% | |
| AGCTCAAAGAATCAACAACA+TGG | + | chr3.1:6647718-6647737 | MS.gene56344:CDS | 35.0% | |
| AGGAACTAGAGACAAAGATA+TGG | + | chr3.1:6645614-6645633 | MS.gene56344:CDS | 35.0% | |
| ATGCTAAGGATACAGCTATT+TGG | + | chr3.1:6647350-6647369 | MS.gene56344:CDS | 35.0% | |
| CAAACCTTCTTCAAATCATG+TGG | - | chr3.1:6647229-6647248 | None:intergenic | 35.0% | |
| CAACAACAACCAATTCCAAA+TGG | + | chr3.1:6647684-6647703 | MS.gene56344:CDS | 35.0% | |
| CACATGATTTGAAGAAGGTT+TGG | + | chr3.1:6647227-6647246 | MS.gene56344:CDS | 35.0% | |
| CATTACCAAGACAATGATCA+TGG | + | chr3.1:6647583-6647602 | MS.gene56344:CDS | 35.0% | |
| CCTTTATCATCATGTGATGA+GGG | + | chr3.1:6647520-6647539 | MS.gene56344:CDS | 35.0% | |
| CTCATCTAAAGATGAATCGA+AGG | - | chr3.1:6648447-6648466 | None:intergenic | 35.0% | |
| GAAGGAAATGGGATTTAGTA+AGG | + | chr3.1:6647177-6647196 | MS.gene56344:CDS | 35.0% | |
| GAAGGACAAAGTAAACTTTG+AGG | + | chr3.1:6646922-6646941 | MS.gene56344:CDS | 35.0% | |
| GACCTACCTGATACAATATT+AGG | + | chr3.1:6647046-6647065 | MS.gene56344:CDS | 35.0% | |
| GATGCATGACAAATGTAGAT+AGG | - | chr3.1:6647903-6647922 | None:intergenic | 35.0% | |
| GCCAAATATGAAGAACAATG+TGG | + | chr3.1:6646965-6646984 | MS.gene56344:CDS | 35.0% | |
| GGAAACAGATGATTATGATG+TGG | + | chr3.1:6647471-6647490 | MS.gene56344:CDS | 35.0% | |
| TAACTTTGTGTTGCCACATT+AGG | - | chr3.1:6648524-6648543 | None:intergenic | 35.0% | |
| TAGAAATTCTGCTCCATTTG+AGG | - | chr3.1:6648326-6648345 | None:intergenic | 35.0% | |
| ! | AGAAAACATCCTTTGGAAAG+CGG | + | chr3.1:6647112-6647131 | MS.gene56344:CDS | 35.0% |
| ! | CTCCTAATTTTCAGAAGATC+AGG | + | chr3.1:6647287-6647306 | MS.gene56344:CDS | 35.0% |
| ! | CTCCTGATCTTCTGAAAATT+AGG | - | chr3.1:6647292-6647311 | None:intergenic | 35.0% |
| ! | GTTGAGACATTTTCATGCAT+TGG | - | chr3.1:6648416-6648435 | None:intergenic | 35.0% |
| ! | TCCAAAGGATGTTTTCTTTG+GGG | - | chr3.1:6647109-6647128 | None:intergenic | 35.0% |
| ! | TCTTGATTTGATTACCATGC+AGG | + | chr3.1:6648155-6648174 | MS.gene56344:intron | 35.0% |
| !! | CAAATCCTTTTGATAGCATG+GGG | + | chr3.1:6645878-6645897 | MS.gene56344:intron | 35.0% |
| !! | GCAAATCCTTTTGATAGCAT+GGG | + | chr3.1:6645877-6645896 | MS.gene56344:intron | 35.0% |
| !! | TGATCATTGTCTTGGTAATG+TGG | - | chr3.1:6647583-6647602 | None:intergenic | 35.0% |
| !! | TGCAAAACAAGATAACGGAA+AGG | + | chr3.1:6645552-6645571 | MS.gene56344:CDS | 35.0% |
| !! | TTTTGGTTAAATCCAGGAGT+TGG | - | chr3.1:6648296-6648315 | None:intergenic | 35.0% |
| !!! | GAATTTATTTTGCAAGCTCC+TGG | - | chr3.1:6647329-6647348 | None:intergenic | 35.0% |
| !!! | TCATGTGGTTTTTTGTATGG+TGG | - | chr3.1:6647214-6647233 | None:intergenic | 35.0% |
| !!! | TGCATGTTTTGGTTAAATCC+AGG | - | chr3.1:6648302-6648321 | None:intergenic | 35.0% |
| AACCTCCATGATCATTGTCT+TGG | - | chr3.1:6647591-6647610 | None:intergenic | 40.0% | |
| AACTGGCACAACATGATTCA+CGG | - | chr3.1:6648261-6648280 | None:intergenic | 40.0% | |
| AAGAGAAAGGCTGACCAAAT+AGG | + | chr3.1:6647652-6647671 | MS.gene56344:CDS | 40.0% | |
| ACCCCAAAGAAAACATCCTT+TGG | + | chr3.1:6647105-6647124 | MS.gene56344:CDS | 40.0% | |
| CAATTCCAAATGGTTGGAGT+TGG | + | chr3.1:6647694-6647713 | MS.gene56344:CDS | 40.0% | |
| CAGGTACATGTTAAAGATGG+TGG | + | chr3.1:6646808-6646827 | MS.gene56344:intron | 40.0% | |
| CCCTCATCACATGATGATAA+AGG | - | chr3.1:6647523-6647542 | None:intergenic | 40.0% | |
| CGACAGGTACATGTTAAAGA+TGG | + | chr3.1:6646805-6646824 | MS.gene56344:intron | 40.0% | |
| GACAATGGCAAACCAATGAT+TGG | + | chr3.1:6646872-6646891 | MS.gene56344:CDS | 40.0% | |
| GGAAAGGAAAAAGAAGAAGG+TGG | + | chr3.1:6645568-6645587 | MS.gene56344:CDS | 40.0% | |
| TACCAAGACAATGATCATGG+AGG | + | chr3.1:6647586-6647605 | MS.gene56344:CDS | 40.0% | |
| TATGGAGTAGTACCTGACAA+TGG | + | chr3.1:6646857-6646876 | MS.gene56344:CDS | 40.0% | |
| TCATATGTAAGTAGCTCGGT+TGG | - | chr3.1:6648056-6648075 | None:intergenic | 40.0% | |
| TCTCTTGGCCGAACAATATT+GGG | + | chr3.1:6648549-6648568 | MS.gene56344:CDS | 40.0% | |
| TGTATCAGGTAGGTCATACA+AGG | - | chr3.1:6647041-6647060 | None:intergenic | 40.0% | |
| TGTGGAGTTTCAACAGTGAA+TGG | + | chr3.1:6646983-6647002 | MS.gene56344:CDS | 40.0% | |
| TTCTCTTGGCCGAACAATAT+TGG | + | chr3.1:6648548-6648567 | MS.gene56344:CDS | 40.0% | |
| ! | AATTTCTCTAGCTTCGACGA+TGG | + | chr3.1:6646364-6646383 | MS.gene56344:intron | 40.0% |
| ! | ATGCATCCCAACGTTGATAA+CGG | + | chr3.1:6645517-6645536 | MS.gene56344:CDS | 40.0% |
| ! | CAAACCAATGATTGGCTCTT+CGG | + | chr3.1:6646880-6646899 | MS.gene56344:CDS | 40.0% |
| ! | CAACTCCAACCATTTGGAAT+TGG | - | chr3.1:6647696-6647715 | None:intergenic | 40.0% |
| ! | GAATCATGGTGGAAGGAAAT+GGG | + | chr3.1:6647166-6647185 | MS.gene56344:CDS | 40.0% |
| ! | GTGGAATTTTGTGATGTTCG+TGG | + | chr3.1:6646827-6646846 | MS.gene56344:CDS | 40.0% |
| ! | TGTTGCTTGATGAGCAAGTA+AGG | + | chr3.1:6647008-6647027 | MS.gene56344:CDS | 40.0% |
| ! | TTTTCCGAAGAGCCAATCAT+TGG | - | chr3.1:6646887-6646906 | None:intergenic | 40.0% |
| !! | AAAGGATGTTTTCTTTGGGG+TGG | - | chr3.1:6647106-6647125 | None:intergenic | 40.0% |
| !! | ATCATTGGTTTGCCATTGTC+AGG | - | chr3.1:6646872-6646891 | None:intergenic | 40.0% |
| !! | GGAGTATTGTTAGACATTCC+AGG | + | chr3.1:6647308-6647327 | MS.gene56344:CDS | 40.0% |
| !! | GGCAAATCCTTTTGATAGCA+TGG | + | chr3.1:6645876-6645895 | MS.gene56344:intron | 40.0% |
| !! | GTTGGAATCATGTTGGTAAC+TGG | - | chr3.1:6648278-6648297 | None:intergenic | 40.0% |
| !! | TAGGGGTGCTAATAAGAGAA+AGG | + | chr3.1:6647639-6647658 | MS.gene56344:CDS | 40.0% |
| !!! | GTGGTTTTTTGTATGGTGGT+GGG | - | chr3.1:6647210-6647229 | None:intergenic | 40.0% |
| !!! | TGTGGTTTTTTGTATGGTGG+TGG | - | chr3.1:6647211-6647230 | None:intergenic | 40.0% |
| ACCAACATGATTCCAACTCC+TGG | + | chr3.1:6648281-6648300 | MS.gene56344:CDS | 45.0% | |
| AGAAAGGCTGACCAAATAGG+AGG | + | chr3.1:6647655-6647674 | MS.gene56344:CDS | 45.0% | |
| AGCTTCCAACTCCAACCATT+TGG | - | chr3.1:6647702-6647721 | None:intergenic | 45.0% | |
| CCAAAACATGCAGCCTCAAA+TGG | + | chr3.1:6648310-6648329 | MS.gene56344:CDS | 45.0% | |
| GCATATCGAAGTCTCCATGT+TGG | - | chr3.1:6647554-6647573 | None:intergenic | 45.0% | |
| GGTAGGTCATACAAGGAGTA+AGG | - | chr3.1:6647034-6647053 | None:intergenic | 45.0% | |
| GTGAACTAGGGTAAACTTGC+AGG | + | chr3.1:6646487-6646506 | MS.gene56344:intron | 45.0% | |
| TACCATGCAGGTAATGACTC+AGG | + | chr3.1:6648167-6648186 | MS.gene56344:intron | 45.0% | |
| TCATATTTGGCGATTGCAGC+TGG | - | chr3.1:6646956-6646975 | None:intergenic | 45.0% | |
| TCCAGGAGTTGGAATCATGT+TGG | - | chr3.1:6648285-6648304 | None:intergenic | 45.0% | |
| TGCTACCCCATGCTATCAAA+AGG | - | chr3.1:6645886-6645905 | None:intergenic | 45.0% | |
| ! | CGAATCATGGTGGAAGGAAA+TGG | + | chr3.1:6647165-6647184 | MS.gene56344:CDS | 45.0% |
| ! | GTGATCTGATTTGCAACAGC+AGG | - | chr3.1:6647778-6647797 | None:intergenic | 45.0% |
| ! | GTGCACAAGAGGGCATATTA+AGG | + | chr3.1:6645731-6645750 | MS.gene56344:CDS | 45.0% |
| ! | TGAGGGTTCTGATACCAACA+TGG | + | chr3.1:6647537-6647556 | MS.gene56344:CDS | 45.0% |
| ! | TGTTGCTGCTTCCTCCTATT+TGG | - | chr3.1:6647669-6647688 | None:intergenic | 45.0% |
| ! | TTGATAGCATGGGGTAGCAT+TGG | + | chr3.1:6645887-6645906 | MS.gene56344:intron | 45.0% |
| !! | CCATTTGAGGCTGCATGTTT+TGG | - | chr3.1:6648313-6648332 | None:intergenic | 45.0% |
| !! | GAAGCACCGTTATCAACGTT+GGG | - | chr3.1:6645526-6645545 | None:intergenic | 45.0% |
| !! | TGAAGCACCGTTATCAACGT+TGG | - | chr3.1:6645527-6645546 | None:intergenic | 45.0% |
| ACAATGGCTCGTGCACAAGA+GGG | + | chr3.1:6645721-6645740 | MS.gene56344:CDS | 50.0% | |
| ACACTACCTGTCAGCTCAAC+GGG | - | chr3.1:6646785-6646804 | None:intergenic | 50.0% | |
| CAACAGGGAACGAATCATGG+TGG | + | chr3.1:6647155-6647174 | MS.gene56344:CDS | 50.0% | |
| CACCATGATTCGTTCCCTGT+TGG | - | chr3.1:6647157-6647176 | None:intergenic | 50.0% | |
| CTCCTGAGTCATTACCTGCA+TGG | - | chr3.1:6648172-6648191 | None:intergenic | 50.0% | |
| CTTCGGAAAATCTACGCGGT+TGG | + | chr3.1:6646897-6646916 | MS.gene56344:CDS | 50.0% | |
| GACACTACCTGTCAGCTCAA+CGG | - | chr3.1:6646786-6646805 | None:intergenic | 50.0% | |
| GATGTTCGTGGCTTCGTCTA+TGG | + | chr3.1:6646839-6646858 | MS.gene56344:CDS | 50.0% | |
| GCAGGTAATGACTCAGGAGA+AGG | + | chr3.1:6648173-6648192 | MS.gene56344:intron | 50.0% | |
| GGCTCTTCGGAAAATCTACG+CGG | + | chr3.1:6646893-6646912 | MS.gene56344:CDS | 50.0% | |
| TGGCACAACATGATTCACGG+TGG | - | chr3.1:6648258-6648277 | None:intergenic | 50.0% | |
| ! | AGGGAACGAATCATGGTGGA+AGG | + | chr3.1:6647159-6647178 | MS.gene56344:CDS | 50.0% |
| ! | GCTTGCTGATGTTGGTCAAG+AGG | - | chr3.1:6647748-6647767 | None:intergenic | 50.0% |
| !! | AAATCTACGCGGTTGGTGGA+AGG | + | chr3.1:6646904-6646923 | MS.gene56344:CDS | 50.0% |
| !! | GTACTGCAGCTTGCTGATGT+TGG | - | chr3.1:6647756-6647775 | None:intergenic | 50.0% |
| AAAGCGGCATTCCTCCACCA+TGG | + | chr3.1:6647128-6647147 | MS.gene56344:CDS | 55.0% | |
| ATTCTCCCCGTTGAGCTGAC+AGG | + | chr3.1:6646776-6646795 | MS.gene56344:intron | 55.0% | |
| CACTACCTGTCAGCTCAACG+GGG | - | chr3.1:6646784-6646803 | None:intergenic | 55.0% | |
| CGGAAAATCTACGCGGTTGG+TGG | + | chr3.1:6646900-6646919 | MS.gene56344:CDS | 55.0% | |
| GACAATGGCTCGTGCACAAG+AGG | + | chr3.1:6645720-6645739 | MS.gene56344:CDS | 55.0% | |
| GGCCAACAGGGAACGAATCA+TGG | + | chr3.1:6647152-6647171 | MS.gene56344:CDS | 55.0% | |
| !! | AGCTGACAGGTAGTGTCGAC+AGG | + | chr3.1:6646789-6646808 | MS.gene56344:intron | 55.0% |
| !! | GGAGGAATGCCGCTTTCCAA+AGG | - | chr3.1:6647124-6647143 | None:intergenic | 55.0% |
| CTCCACCATGGTGGCCAACA+GGG | + | chr3.1:6647140-6647159 | MS.gene56344:CDS | 60.0% | |
| TCGTTCCCTGTTGGCCACCA+TGG | - | chr3.1:6647148-6647167 | None:intergenic | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | - | chr3.1:6647145-6647164 | None:intergenic | 60.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | + | chr3.1:6647139-6647158 | MS.gene56344:CDS | 65.0% | |
| CCTGTTGGCCACCATGGTGG+AGG | - | chr3.1:6647142-6647161 | None:intergenic | 65.0% | |
| GCGGCATTCCTCCACCATGG+TGG | + | chr3.1:6647131-6647150 | MS.gene56344:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 6645517 | 6648577 | 6645517 | ID=MS.gene56344 |
| chr3.1 | mRNA | 6645517 | 6648577 | 6645517 | ID=MS.gene56344.t1;Parent=MS.gene56344 |
| chr3.1 | exon | 6645517 | 6645752 | 6645517 | ID=MS.gene56344.t1.exon1;Parent=MS.gene56344.t1 |
| chr3.1 | CDS | 6645517 | 6645752 | 6645517 | ID=cds.MS.gene56344.t1;Parent=MS.gene56344.t1 |
| chr3.1 | exon | 6646811 | 6647808 | 6646811 | ID=MS.gene56344.t1.exon2;Parent=MS.gene56344.t1 |
| chr3.1 | CDS | 6646811 | 6647808 | 6646811 | ID=cds.MS.gene56344.t1;Parent=MS.gene56344.t1 |
| chr3.1 | exon | 6648177 | 6648577 | 6648177 | ID=MS.gene56344.t1.exon3;Parent=MS.gene56344.t1 |
| chr3.1 | CDS | 6648177 | 6648577 | 6648177 | ID=cds.MS.gene56344.t1;Parent=MS.gene56344.t1 |
| Gene Sequence |
| Protein sequence |
