AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56465

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56465.t1 MTR_7g061980 89.916 119 12 0 1 119 1 119 1.65e-70 225
MS.gene56465.t1 MTR_7g074790 60.947 169 48 1 1 169 1 151 3.87e-63 210
MS.gene56465.t1 MTR_5g039760 61.176 170 41 2 1 169 1 146 6.03e-63 208
MS.gene56465.t1 MTR_0402s0040 44.172 163 86 4 10 169 26 186 4.57e-29 122
MS.gene56465.t1 MTR_3g058090 47.244 127 43 2 349 475 4 106 3.00e-28 109
MS.gene56465.t1 MTR_4g102720 35.032 157 68 2 7 163 4 126 6.92e-26 106
MS.gene56465.t1 MTR_4g069880 73.529 68 18 0 1 68 1 68 2.13e-25 100
MS.gene56465.t1 MTR_5g015480 40.909 132 73 4 10 138 56 185 2.52e-17 82.8
MS.gene56465.t1 MTR_2g099430 48.864 88 43 2 33 119 26 112 5.69e-17 77.8
MS.gene56465.t1 MTR_7g113010 40.945 127 59 3 10 134 457 569 1.26e-16 84.3
MS.gene56465.t1 MTR_2g070590 42.857 105 56 3 10 111 17 120 2.17e-16 76.3
MS.gene56465.t1 MTR_6g022070 29.932 147 96 3 184 329 1 141 1.53e-15 79.0
MS.gene56465.t1 MTR_1g086270 29.688 128 71 2 184 311 1 109 1.56e-14 70.5
MS.gene56465.t1 MTR_6g017200 43.750 96 50 3 10 102 58 152 2.26e-14 71.6
MS.gene56465.t1 MTR_6g051425 31.395 172 104 6 9 169 13 181 1.32e-13 73.2
MS.gene56465.t1 MTR_1g057920 43.333 90 47 3 10 96 34 122 5.92e-13 66.6
MS.gene56465.t1 MTR_5g045210 30.508 118 75 2 352 463 20 136 1.20e-12 67.8
MS.gene56465.t1 MTR_4g117620 81.250 32 6 0 499 530 35 66 1.23e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56465.t1 AT3G22170 30.000 160 112 0 163 322 334 493 3.35e-21 99.4
MS.gene56465.t1 AT3G22170 30.000 160 112 0 163 322 334 493 3.35e-21 99.4
MS.gene56465.t1 AT4G15090 24.706 170 128 0 163 332 325 494 5.39e-20 95.5
MS.gene56465.t1 AT4G15090 25.466 161 116 4 3 161 44 202 6.36e-11 66.2
MS.gene56465.t1 AT4G15090 24.706 170 128 0 163 332 325 494 5.39e-20 95.5
MS.gene56465.t1 AT4G15090 25.466 161 116 4 3 161 44 202 6.36e-11 66.2
MS.gene56465.t1 AT4G15090 24.706 170 128 0 163 332 325 494 5.39e-20 95.5
MS.gene56465.t1 AT4G15090 25.466 161 116 4 3 161 44 202 6.36e-11 66.2
MS.gene56465.t1 AT4G15090 24.706 170 128 0 163 332 325 494 5.39e-20 95.5
MS.gene56465.t1 AT4G15090 25.466 161 116 4 3 161 44 202 6.36e-11 66.2
MS.gene56465.t1 AT4G15090 24.706 170 128 0 163 332 325 494 5.39e-20 95.5
MS.gene56465.t1 AT4G15090 25.466 161 116 4 3 161 44 202 6.36e-11 66.2
MS.gene56465.t1 AT1G76320 26.904 197 142 1 167 361 266 462 1.71e-19 93.6
MS.gene56465.t1 AT1G76320 26.904 197 142 1 167 361 266 462 1.82e-19 93.6
MS.gene56465.t1 AT1G76320 26.904 197 142 1 167 361 266 462 1.82e-19 93.6
MS.gene56465.t1 AT1G76320 26.904 197 142 1 167 361 266 462 1.90e-19 93.6
MS.gene56465.t1 AT4G38180 25.731 171 124 1 159 329 348 515 2.87e-19 93.2
MS.gene56465.t1 AT4G38180 33.146 178 112 5 6 176 69 246 8.43e-17 85.1
MS.gene56465.t1 AT4G19990 26.207 145 107 0 172 316 225 369 1.09e-15 81.6
MS.gene56465.t1 AT4G19990 26.207 145 107 0 172 316 282 426 1.13e-15 81.6
MS.gene56465.t1 AT4G19990 26.207 145 107 0 172 316 282 426 1.13e-15 81.6
MS.gene56465.t1 AT4G19990 26.207 145 107 0 172 316 282 426 1.13e-15 81.6
MS.gene56465.t1 AT4G19990 26.207 145 107 0 172 316 296 440 1.26e-15 81.3
MS.gene56465.t1 AT4G19990 26.207 145 107 0 172 316 282 426 1.44e-15 81.3
MS.gene56465.t1 AT4G19990 26.207 145 107 0 172 316 282 426 1.44e-15 81.3
MS.gene56465.t1 AT5G18960 22.876 153 112 2 163 315 449 595 1.23e-13 75.1
MS.gene56465.t1 AT5G18960 36.538 104 50 3 9 110 42 131 1.25e-11 68.6
MS.gene56465.t1 AT5G18960 22.876 153 112 2 163 315 449 595 1.23e-13 75.1
MS.gene56465.t1 AT5G18960 36.538 104 50 3 9 110 42 131 1.25e-11 68.6
MS.gene56465.t1 AT3G06250 22.517 151 111 2 163 313 425 569 2.42e-13 73.9
MS.gene56465.t1 AT3G06250 37.037 108 52 3 5 110 23 116 4.10e-13 73.6
MS.gene56465.t1 AT3G06250 22.517 151 111 2 163 313 425 569 2.42e-13 73.9
MS.gene56465.t1 AT3G06250 37.037 108 52 3 5 110 23 116 4.10e-13 73.6
MS.gene56465.t1 AT3G06250 22.517 151 111 2 163 313 425 569 2.42e-13 73.9
MS.gene56465.t1 AT3G06250 37.037 108 52 3 5 110 23 116 4.10e-13 73.6
MS.gene56465.t1 AT1G52520 25.000 152 113 1 171 322 354 504 4.15e-13 73.2
MS.gene56465.t1 AT2G32250 22.078 154 120 0 163 316 269 422 6.19e-13 72.8
MS.gene56465.t1 AT2G32250 22.078 154 120 0 163 316 228 381 6.42e-13 72.8
MS.gene56465.t1 AT2G32250 22.078 154 120 0 163 316 228 381 6.81e-13 72.8
MS.gene56465.t1 AT2G32250 22.078 154 120 0 163 316 269 422 6.90e-13 72.8
MS.gene56465.t1 AT2G32250 22.078 154 120 0 163 316 269 422 6.90e-13 72.8
MS.gene56465.t1 AT2G32250 22.078 154 120 0 163 316 269 422 7.10e-13 72.8
MS.gene56465.t1 AT2G32250 22.078 154 120 0 163 316 269 422 7.10e-13 72.8
MS.gene56465.t1 AT2G32250 22.078 154 120 0 163 316 269 422 7.10e-13 72.8
MS.gene56465.t1 AT3G07500 41.346 104 58 3 9 110 32 134 6.27e-11 63.2
MS.gene56465.t1 AT3G59470 37.500 104 61 3 9 110 69 170 7.82e-11 63.5
MS.gene56465.t1 AT3G59470 37.500 104 61 3 9 110 69 170 7.82e-11 63.5

Find 130 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATGGTTGAAGAATTCT+AGG 0.204898 4.4:+29876425 None:intergenic
CCTCAACAACTCTTTCAAAA+TGG 0.207712 4.4:+29876410 None:intergenic
CGAGAAAGTGTAATTCTTAC+AGG 0.208554 4.4:+29877447 None:intergenic
TCAAATCCCATTCCAATCTT+TGG 0.249547 4.4:+29877672 None:intergenic
TGGAAGAGGCTAGTAAATTT+TGG 0.264112 4.4:-29877644 MS.gene56465:CDS
CCCTTGCCATTGCTTGATCT+TGG 0.267996 4.4:+29876800 None:intergenic
TGTAGGAAGTTTGATACTTT+TGG 0.276531 4.4:-29876096 MS.gene56465:CDS
ACATCCGAACTCACAATTTC+TGG 0.277637 4.4:+29875748 None:intergenic
TTAATATTCACGACAAATCT+TGG 0.306342 4.4:-29876588 MS.gene56465:CDS
ATGGTTCTCTTCCGCTCCTT+TGG 0.321570 4.4:-29873860 MS.gene56465:CDS
ACATGGCATTTGTTACAAAA+TGG 0.322826 4.4:-29876736 MS.gene56465:CDS
TGGCTCATGACTCTGGATTA+AGG 0.328436 4.4:-29877296 MS.gene56465:CDS
TATTAGAGATGCACTTGTTC+TGG 0.328727 4.4:-29874090 MS.gene56465:CDS
AGGGCAATTTGTTCTAATAT+CGG 0.336767 4.4:+29877467 None:intergenic
TGGCTCAAGTTTCTTGATAA+TGG 0.349009 4.4:-29875847 MS.gene56465:CDS
ATTCGATTTCTAGACAAGTT+AGG 0.350154 4.4:+29875931 None:intergenic
TCGCTTAATTCTCTTTGAAC+CGG 0.352664 4.4:+29875696 None:intergenic
CAAAATGGAGTTAAACATCT+TGG 0.359049 4.4:-29876721 MS.gene56465:CDS
ATTGATTTGGCTCATGACTC+TGG 0.376335 4.4:-29877303 MS.gene56465:CDS
AACTTGAGCCATTCTTCCTT+GGG 0.383639 4.4:+29875859 None:intergenic
TGGCATCTTCAGATGTTGAT+TGG 0.384718 4.4:-29877698 MS.gene56465:CDS
AAACTTGAGCCATTCTTCCT+TGG 0.386061 4.4:+29875858 None:intergenic
TGACATGTTCAAGAAAATAA+TGG 0.392454 4.4:-29875818 MS.gene56465:CDS
ATCTTGCACAACGCCATAAC+GGG 0.394237 4.4:+29875981 None:intergenic
ATGTCGATTGGTTTGTTGTA+AGG 0.397901 4.4:-29877544 MS.gene56465:CDS
GCAAGCATATGAGATTGATT+TGG 0.403796 4.4:-29877316 MS.gene56465:CDS
TGCCCTGGTAGCTGAAGCTT+TGG 0.406638 4.4:-29874114 MS.gene56465:CDS
TGGTCAGTGAAGATCGTCTT+TGG 0.409022 4.4:+29876820 None:intergenic
ATGGACAATAACGGTGATAA+TGG 0.410451 4.4:-29875778 MS.gene56465:CDS
GTTGATTGGAAACCAAAGAT+TGG 0.412087 4.4:-29877684 MS.gene56465:CDS
TTTAGGGGAAAGGAGGTTGA+AGG 0.413102 4.4:-29875958 MS.gene56465:CDS
TAGAAATTACCTTGGTATAG+TGG 0.414029 4.4:-29874171 MS.gene56465:CDS
TATAGTTTCCGTGTTGGCTT+CGG 0.415108 4.4:-29877615 MS.gene56465:CDS
ATTACACTTTCTCGTAAGAA+TGG 0.418220 4.4:-29877438 MS.gene56465:CDS
TGTCGTGAATATTAAATTCG+TGG 0.420213 4.4:+29876596 None:intergenic
AAAATGGAGTTAAACATCTT+GGG 0.438747 4.4:-29876720 MS.gene56465:CDS
TGGAAACCAAAGATTGGAAT+GGG 0.444346 4.4:-29877678 MS.gene56465:CDS
ACAAGATAAGTCAAGGTTGT+AGG 0.445598 4.4:+29874067 None:intergenic
TCTCCGTTTGCAGCTGCTAA+AGG 0.446917 4.4:-29873817 MS.gene56465:CDS
TATGTTCTTCTTCAAAGTCA+TGG 0.449922 4.4:+29877403 None:intergenic
CTTGATCCTCATGTACTTGT+GGG 0.450966 4.4:+29875308 None:intergenic
TATGCAAGCAAAGGGGTTCA+TGG 0.452729 4.4:-29875725 MS.gene56465:CDS
CTTATATTAATGTTAACACT+TGG 0.455104 4.4:+29873762 None:intergenic
CGCTTAATTCTCTTTGAACC+GGG 0.459285 4.4:+29875697 None:intergenic
TAGCCAAAGCTTCAGCTACC+AGG 0.463531 4.4:+29874111 None:intergenic
TTACAAGCTGTGAGTTTACA+TGG 0.464214 4.4:-29873935 MS.gene56465:CDS
TAAGCGATACAAAAGTTGTC+TGG 0.469438 4.4:-29875680 MS.gene56465:CDS
CCTTTGGACAGTTAAACCTT+CGG 0.469648 4.4:-29873844 MS.gene56465:CDS
ATTAATGTTAACACTTGGAA+AGG 0.471101 4.4:+29873767 None:intergenic
GGAACTTCGCGCACAAGCTA+TGG 0.471111 4.4:-29875797 MS.gene56465:CDS
GTTTGAATTGAATGATGTTA+AGG 0.471472 4.4:-29876046 MS.gene56465:CDS
GTTGTAAGGAAGGGCTAAAG+AGG 0.472997 4.4:-29877530 MS.gene56465:CDS
TTCTCGTAAGAATGGAAAGT+TGG 0.483302 4.4:-29877430 MS.gene56465:CDS
CAATTACACAGCCATGCTAA+TGG 0.488206 4.4:-29875284 MS.gene56465:intron
TCGTCCAGAAATTGTGAGTT+CGG 0.488854 4.4:-29875752 MS.gene56465:CDS
ACATCTTGGGAACTTGATGA+AGG 0.495656 4.4:-29876707 MS.gene56465:CDS
TGGACAAGAGAAGCCCGTTA+TGG 0.496786 4.4:-29875994 MS.gene56465:CDS
TCGGATGTTATGCAAGCAAA+GGG 0.497034 4.4:-29875733 MS.gene56465:CDS
AATCTTGCACAACGCCATAA+CGG 0.497648 4.4:+29875980 None:intergenic
GAGAAAAGATATGCATATGA+AGG 0.500242 4.4:-29877504 MS.gene56465:CDS
TAAGGAAGGGCTAAAGAGGA+AGG 0.502968 4.4:-29877526 MS.gene56465:CDS
CGATTGGTTTGTTGTAAGGA+AGG 0.503555 4.4:-29877540 MS.gene56465:CDS
GGGATTTGATTCCATGGAAG+AGG 0.504983 4.4:-29877658 MS.gene56465:CDS
CAGAGACAACACACATGCTT+CGG 0.505182 4.4:-29877362 MS.gene56465:CDS
AAGCATCACCCAAGGAAGAA+TGG 0.505676 4.4:-29875867 MS.gene56465:CDS
CAGGGCTGCATGTTATATGA+AGG 0.506115 4.4:-29876536 MS.gene56465:CDS
TTAATGTTAACACTTGGAAA+GGG 0.506169 4.4:+29873768 None:intergenic
GCTTCAGCTACCAGGGCAGA+GGG 0.506285 4.4:+29874119 None:intergenic
GTTGATTCACTTGCAGCTGA+TGG 0.509490 4.4:-29873879 MS.gene56465:CDS
TTGGAAACCAAAGATTGGAA+TGG 0.511109 4.4:-29877679 MS.gene56465:CDS
TAGTGTATCGTCATGTCGAT+TGG 0.512454 4.4:-29877556 MS.gene56465:CDS
CTCTAACTCCGAAGCCAACA+CGG 0.517966 4.4:+29877607 None:intergenic
CATAAACCATGATGAGTCTC+GGG 0.518603 4.4:+29876760 None:intergenic
TTCAGCTACCAGGGCAGAGG+GGG 0.520695 4.4:+29874121 None:intergenic
AGCTTCAGCTACCAGGGCAG+AGG 0.523565 4.4:+29874118 None:intergenic
CATGATTATAGTTTCCGTGT+TGG 0.526774 4.4:-29877621 MS.gene56465:CDS
CTCATCATGGTTTATGCACA+TGG 0.528564 4.4:-29876753 MS.gene56465:CDS
TGGAATGGGATTTGATTCCA+TGG 0.530178 4.4:-29877664 MS.gene56465:CDS
TACCTTGGTATAGTGGTGGC+AGG 0.530812 4.4:-29874164 MS.gene56465:CDS
TATCCTTTAGCAGCTGCAAA+CGG 0.534275 4.4:+29873814 None:intergenic
ACTTGATCCTCATGTACTTG+TGG 0.537638 4.4:+29875307 None:intergenic
CCTTGACTTATCTTGTATTG+TGG 0.538148 4.4:-29874060 MS.gene56465:CDS
GCATAAACCATGATGAGTCT+CGG 0.547827 4.4:+29876759 None:intergenic
TTTCACTAACTTGTGTACTA+CGG 0.549274 4.4:+29876494 None:intergenic
TGACTTATCTTGTATTGTGG+TGG 0.551076 4.4:-29874057 MS.gene56465:CDS
AATCCTCACATAAGCTTGCA+AGG 0.553450 4.4:-29876354 MS.gene56465:intron
ACCAAGATCAAGCAATGGCA+AGG 0.557252 4.4:-29876801 MS.gene56465:CDS
GGTACTAATTCAGCAAGCTC+AGG 0.558289 4.4:-29874203 MS.gene56465:CDS
AGTGTGGTGCAATGTTGTAA+AGG 0.561497 4.4:-29874020 MS.gene56465:CDS
TTCGGATGTTATGCAAGCAA+AGG 0.563515 4.4:-29875734 MS.gene56465:CDS
TGTCTCTAAGTTCATTAAAG+CGG 0.564647 4.4:-29875896 MS.gene56465:CDS
TGTAAAGGAAAGTTAGAGAG+AGG 0.566514 4.4:-29874005 MS.gene56465:CDS
AAATTTACTAGCCTCTTCCA+TGG 0.566941 4.4:+29877647 None:intergenic
ATGAAGGGAGTGTTAACACT+TGG 0.569898 4.4:-29876520 MS.gene56465:CDS
CATCTTGGGAACTTGATGAA+GGG 0.569919 4.4:-29876706 MS.gene56465:CDS
GTTGTTGTTAGAAATTACCT+TGG 0.572671 4.4:-29874179 MS.gene56465:CDS
AGCCAAAGCTTCAGCTACCA+GGG 0.575378 4.4:+29874112 None:intergenic
GTTTGCAGCTGCTAAAGGAT+AGG 0.583670 4.4:-29873812 MS.gene56465:CDS
GATTGGTTTGTTGTAAGGAA+GGG 0.585108 4.4:-29877539 MS.gene56465:CDS
GCAGGGCATAGAGCTAATGT+TGG 0.587433 4.4:-29877240 MS.gene56465:CDS
TACAAGCTGTGAGTTTACAT+GGG 0.604724 4.4:-29873934 MS.gene56465:CDS
AAATTACCTTGGTATAGTGG+TGG 0.611521 4.4:-29874168 MS.gene56465:CDS
AGGGCTGCATGTTATATGAA+GGG 0.616662 4.4:-29876535 MS.gene56465:CDS
GTGATGCCCGAGACTCATCA+TGG 0.618218 4.4:-29876766 MS.gene56465:CDS
CCACAATACAAGATAAGTCA+AGG 0.619194 4.4:+29874060 None:intergenic
TTGATCCTCATGTACTTGTG+GGG 0.619511 4.4:+29875309 None:intergenic
TTTACATGGGTGGCTCGTGA+TGG 0.622022 4.4:-29873921 MS.gene56465:CDS
AAGCTGTGAGTTTACATGGG+TGG 0.624079 4.4:-29873931 MS.gene56465:CDS
TGGTAACAAAGTGGCTCACA+TGG 0.624371 4.4:-29873901 MS.gene56465:CDS
GCACAAGCTATGGACAATAA+CGG 0.625593 4.4:-29875787 MS.gene56465:CDS
CACTGACCAAGATCAAGCAA+TGG 0.631892 4.4:-29876806 MS.gene56465:CDS
GGCAACTGAAGCATCACCCA+AGG 0.632035 4.4:-29875875 MS.gene56465:CDS
TGAGTCCCCACAAGTACATG+AGG 0.639402 4.4:-29875314 MS.gene56465:CDS
GGTTTAACTGTCCAAAGGAG+CGG 0.639784 4.4:+29873849 None:intergenic
CCGAAGGTTTAACTGTCCAA+AGG 0.642159 4.4:+29873844 None:intergenic
GAGAAAGTGTAATTCTTACA+GGG 0.642563 4.4:+29877448 None:intergenic
CTTGGGAACTTGATGAAGGG+AGG 0.646497 4.4:-29876703 MS.gene56465:CDS
AGCTAATGTTGGATTTACAG+AGG 0.647899 4.4:-29877229 MS.gene56465:CDS
TAACCTTGCAAGCTTATGTG+AGG 0.649097 4.4:+29876351 None:intergenic
CCAAGATCAAGCAATGGCAA+GGG 0.649905 4.4:-29876800 MS.gene56465:CDS
GGCTCGTGATGGTAACAAAG+TGG 0.654712 4.4:-29873910 MS.gene56465:CDS
ACTTGTGGGGACTCATAAGT+CGG 0.656864 4.4:+29875322 None:intergenic
AAGGGGTTCATGGTACGACC+CGG 0.658078 4.4:-29875715 MS.gene56465:CDS
CTTCAGCTACCAGGGCAGAG+GGG 0.663542 4.4:+29874120 None:intergenic
TAATGTTGGATTTACAGAGG+TGG 0.664199 4.4:-29877226 MS.gene56465:CDS
GGAGAGTGACTCTTTGAGTG+TGG 0.674035 4.4:-29874036 MS.gene56465:CDS
TGTGGGGACTCATAAGTCGG+AGG 0.700028 4.4:+29875325 None:intergenic
CGGATGTTATGCAAGCAAAG+GGG 0.705294 4.4:-29875732 MS.gene56465:CDS
AGCCTGCCACCACTATACCA+AGG 0.706664 4.4:+29874162 None:intergenic
TGCAAACGGAGAGAATCCGA+AGG 0.713004 4.4:+29873828 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATTAAAATTATTAACA+TGG - chr4.4:29876757-29876776 MS.gene56465:CDS 10.0%
!!! TAATTTTACATAATCATTTT+AGG - chr4.4:29876086-29876105 MS.gene56465:CDS 10.0%
!! ATTTCAAAAACAAATTCATA+AGG - chr4.4:29876198-29876217 MS.gene56465:intron 15.0%
!! TTATGAACTTAAAAAAAACA+GGG - chr4.4:29874903-29874922 MS.gene56465:intron 15.0%
!!! TGTTTTAATTTTACTTGTTT+TGG - chr4.4:29875885-29875904 MS.gene56465:CDS 15.0%
!! CTTAACTTTAAACTTAGAAT+TGG - chr4.4:29876848-29876867 MS.gene56465:intron 20.0%
!! CTTATATTAATGTTAACACT+TGG + chr4.4:29877698-29877717 None:intergenic 20.0%
!! CTTATGAACTTAAAAAAAAC+AGG - chr4.4:29874902-29874921 MS.gene56465:intron 20.0%
!! GCATTCAATATTAGTTAATA+TGG - chr4.4:29876948-29876967 MS.gene56465:intron 20.0%
!! TAATAATATGTTTCACTAAC+AGG + chr4.4:29877117-29877136 None:intergenic 20.0%
!! TGTTTAGGAATAATCTAATT+TGG + chr4.4:29876976-29876995 None:intergenic 20.0%
!!! AGAACTATATTTTAAAAAGG+TGG - chr4.4:29875443-29875462 MS.gene56465:intron 20.0%
!!! CAATTCTAAGTTTAAAGTTA+AGG + chr4.4:29876850-29876869 None:intergenic 20.0%
!!! CTGAGAACTATATTTTAAAA+AGG - chr4.4:29875440-29875459 MS.gene56465:intron 20.0%
!!! CTTTTTAAAATATAGTTCTC+AGG + chr4.4:29875442-29875461 None:intergenic 20.0%
!!! GTTTTTTTTAAGTTCATAAG+TGG + chr4.4:29874902-29874921 None:intergenic 20.0%
!!! TTTTAAGTTGTTATTAATGC+AGG - chr4.4:29876258-29876277 MS.gene56465:intron 20.0%
!!! TTTTATTACACAAGTAAGTT+TGG - chr4.4:29877058-29877077 MS.gene56465:intron 20.0%
! AAAATGGAGTTAAACATCTT+GGG - chr4.4:29874737-29874756 MS.gene56465:intron 25.0%
! AACATGGTATTTCTTTGATT+TGG - chr4.4:29876773-29876792 MS.gene56465:CDS 25.0%
! AGTGAAACATATTATTATGC+AGG - chr4.4:29877120-29877139 MS.gene56465:intron 25.0%
! ATTAATGTTAACACTTGGAA+AGG + chr4.4:29877693-29877712 None:intergenic 25.0%
! CAGAAAAAAAAAAAAGCAAG+TGG + chr4.4:29874501-29874520 None:intergenic 25.0%
! CTAAGATACATGTAAAATCA+TGG + chr4.4:29876061-29876080 None:intergenic 25.0%
! GTTTGAATTGAATGATGTTA+AGG - chr4.4:29875411-29875430 MS.gene56465:intron 25.0%
! TGACATGTTCAAGAAAATAA+TGG - chr4.4:29875639-29875658 MS.gene56465:CDS 25.0%
! TTAATATTCACGACAAATCT+TGG - chr4.4:29874869-29874888 MS.gene56465:intron 25.0%
! TTAATGTTAACACTTGGAAA+GGG + chr4.4:29877692-29877711 None:intergenic 25.0%
! TTCACAAACAAAAAAGAAGA+CGG - chr4.4:29873878-29873897 MS.gene56465:CDS 25.0%
!! AGTAAGTTTGGAATTAAAGT+TGG - chr4.4:29877070-29877089 MS.gene56465:intron 25.0%
!! ATATTTTCAACGACAATTGT+TGG - chr4.4:29874323-29874342 MS.gene56465:intron 25.0%
!! CATGAATTTATGTAAGCTTT+TGG - chr4.4:29876700-29876719 MS.gene56465:CDS 25.0%
!! GTAAGTTTGGAATTAAAGTT+GGG - chr4.4:29877071-29877090 MS.gene56465:intron 25.0%
!!! ACATAATCATTTTAGGTTGA+TGG - chr4.4:29876093-29876112 MS.gene56465:CDS 25.0%
!!! CACTTGCTTTTTTTTTTTTC+TGG - chr4.4:29874499-29874518 MS.gene56465:intron 25.0%
!!! TTATGTAAGCTTTTGGAATA+TGG - chr4.4:29876707-29876726 MS.gene56465:CDS 25.0%
!!! TTTTGAAATTACCATTAGCA+TGG + chr4.4:29876187-29876206 None:intergenic 25.0%
!!! TTTTTTAGAGATTACCACTA+GGG - chr4.4:29877192-29877211 MS.gene56465:intron 25.0%
AAAAAAAGCAAGTGGTCTAT+TGG + chr4.4:29874493-29874512 None:intergenic 30.0%
AACATACAGTAGCAGAAAAT+AGG + chr4.4:29875921-29875940 None:intergenic 30.0%
ACCTAAAGAAAAAAGTTCAC+AGG - chr4.4:29875837-29875856 MS.gene56465:CDS 30.0%
ATAGAGGTTCAGTCATATTT+GGG - chr4.4:29874533-29874552 MS.gene56465:intron 30.0%
ATATGACTGAACCTCTATAA+TGG + chr4.4:29874531-29874550 None:intergenic 30.0%
ATTACACTTTCTCGTAAGAA+TGG - chr4.4:29874019-29874038 MS.gene56465:CDS 30.0%
CAAAATGGAGTTAAACATCT+TGG - chr4.4:29874736-29874755 MS.gene56465:intron 30.0%
CAAAATGGTTGAAGAATTCT+AGG + chr4.4:29875035-29875054 None:intergenic 30.0%
CATCTGATATGCATGAAAAA+AGG + chr4.4:29874358-29874377 None:intergenic 30.0%
GAGAAAAGATATGCATATGA+AGG - chr4.4:29873953-29873972 MS.gene56465:CDS 30.0%
GTTGTTTGATACATTCTTAC+AGG - chr4.4:29874597-29874616 MS.gene56465:intron 30.0%
TAGAAATTACCTTGGTATAG+TGG - chr4.4:29877286-29877305 MS.gene56465:CDS 30.0%
TATAGAGGTTCAGTCATATT+TGG - chr4.4:29874532-29874551 MS.gene56465:intron 30.0%
TATGTTCTTCTTCAAAGTCA+TGG + chr4.4:29874057-29874076 None:intergenic 30.0%
TGATATGCATGAAAAAAGGA+TGG + chr4.4:29874354-29874373 None:intergenic 30.0%
TGTCGTGAATATTAAATTCG+TGG + chr4.4:29874864-29874883 None:intergenic 30.0%
TGTCTCTAAGTTCATTAAAG+CGG - chr4.4:29875561-29875580 MS.gene56465:intron 30.0%
TGTTATTAATGCAGGCAATA+GGG - chr4.4:29876266-29876285 MS.gene56465:intron 30.0%
TTAAGGCAAAGAATAATGAG+TGG + chr4.4:29876833-29876852 None:intergenic 30.0%
TTGTGAATATGTCATCACTA+AGG - chr4.4:29875276-29875295 MS.gene56465:intron 30.0%
! AAGAAAAAGAAGTATGCGTA+TGG - chr4.4:29874279-29874298 MS.gene56465:intron 30.0%
! ACATGGCATTTGTTACAAAA+TGG - chr4.4:29874721-29874740 MS.gene56465:intron 30.0%
! AGGGCAATTTGTTCTAATAT+CGG + chr4.4:29873993-29874012 None:intergenic 30.0%
! ATTCGATTTCTAGACAAGTT+AGG + chr4.4:29875529-29875548 None:intergenic 30.0%
! ATTTTGGATTACGGGTATTT+TGG - chr4.4:29874426-29874445 MS.gene56465:intron 30.0%
! GAGAAAGTGTAATTCTTACA+GGG + chr4.4:29874012-29874031 None:intergenic 30.0%
! GTGTGTATATTTTTCCCATT+TGG + chr4.4:29875158-29875177 None:intergenic 30.0%
! GTTGTTGTTAGAAATTACCT+TGG - chr4.4:29877278-29877297 MS.gene56465:CDS 30.0%
! TCTCTGAATTTTGTAGATCA+TGG + chr4.4:29874081-29874100 None:intergenic 30.0%
! TGTAGGAAGTTTGATACTTT+TGG - chr4.4:29875361-29875380 MS.gene56465:intron 30.0%
! TTGTTATTAATGCAGGCAAT+AGG - chr4.4:29876265-29876284 MS.gene56465:intron 30.0%
! TTTCACTAACTTGTGTACTA+CGG + chr4.4:29874966-29874985 None:intergenic 30.0%
!! AAGCAGATTTTGAGAAACTT+TGG - chr4.4:29874827-29874846 MS.gene56465:intron 30.0%
!! TTTCCCATTTGGATTAGTAT+TGG + chr4.4:29875147-29875166 None:intergenic 30.0%
!! TTTTTAGAGATTACCACTAG+GGG - chr4.4:29877193-29877212 MS.gene56465:intron 30.0%
!!! ACCACTTAGTAGTGTTATTT+TGG - chr4.4:29876526-29876545 MS.gene56465:CDS 30.0%
!!! ACCTGTGAACTTTTTTCTTT+AGG + chr4.4:29875841-29875860 None:intergenic 30.0%
!!! CTTTTGGAATATGGATATAC+TGG - chr4.4:29876716-29876735 MS.gene56465:CDS 30.0%
!!! CTTTTTTCATGCATATCAGA+TGG - chr4.4:29874356-29874375 MS.gene56465:intron 30.0%
!!! GTTTTTTAGAGATTACCACT+AGG - chr4.4:29877191-29877210 MS.gene56465:intron 30.0%
!!! TGTGAACTTTTTTCTTTAGG+TGG + chr4.4:29875838-29875857 None:intergenic 30.0%
!!! TTTTGGTGATGTTGTTTCTT+TGG - chr4.4:29874443-29874462 MS.gene56465:intron 30.0%
AAATTACCTTGGTATAGTGG+TGG - chr4.4:29877289-29877308 MS.gene56465:CDS 35.0%
AAGTTCACAGGTATATGAGT+TGG - chr4.4:29875849-29875868 MS.gene56465:CDS 35.0%
ACAAAACAGCAGCAAAAAAC+AGG + chr4.4:29876399-29876418 None:intergenic 35.0%
ACAAGATAAGTCAAGGTTGT+AGG + chr4.4:29877393-29877412 None:intergenic 35.0%
AGACAAGTGAGTCATTTAGA+TGG - chr4.4:29874575-29874594 MS.gene56465:intron 35.0%
AGCTAATGTTGGATTTACAG+AGG - chr4.4:29874228-29874247 MS.gene56465:CDS 35.0%
ATACAGTAGCAGAAAATAGG+TGG + chr4.4:29875918-29875937 None:intergenic 35.0%
ATCACTAAGGCAAAACATGA+AGG - chr4.4:29875289-29875308 MS.gene56465:CDS 35.0%
ATGGACAATAACGGTGATAA+TGG - chr4.4:29875679-29875698 MS.gene56465:CDS 35.0%
CATGATTATAGTTTCCGTGT+TGG - chr4.4:29873836-29873855 MS.gene56465:CDS 35.0%
CCACAATACAAGATAAGTCA+AGG + chr4.4:29877400-29877419 None:intergenic 35.0%
CCTCAACAACTCTTTCAAAA+TGG + chr4.4:29875050-29875069 None:intergenic 35.0%
CCTTGACTTATCTTGTATTG+TGG - chr4.4:29877397-29877416 MS.gene56465:CDS 35.0%
GATTCAGATTCATGTCTAGT+TGG + chr4.4:29875253-29875272 None:intergenic 35.0%
GCAAGCATATGAGATTGATT+TGG - chr4.4:29874141-29874160 MS.gene56465:CDS 35.0%
GCACCAATACTAATCCAAAT+GGG - chr4.4:29875141-29875160 MS.gene56465:intron 35.0%
GCCAAAATAACACTACTAAG+TGG + chr4.4:29876530-29876549 None:intergenic 35.0%
GTCTTCACTTAGAATTGTTC+AGG + chr4.4:29876914-29876933 None:intergenic 35.0%
GTTATTAATGCAGGCAATAG+GGG - chr4.4:29876267-29876286 MS.gene56465:intron 35.0%
GTTGATTGGAAACCAAAGAT+TGG - chr4.4:29873773-29873792 MS.gene56465:CDS 35.0%
TAAGCGATACAAAAGTTGTC+TGG - chr4.4:29875777-29875796 MS.gene56465:CDS 35.0%
TAATGTTGGATTTACAGAGG+TGG - chr4.4:29874231-29874250 MS.gene56465:CDS 35.0%
TACAAGCTGTGAGTTTACAT+GGG - chr4.4:29877523-29877542 MS.gene56465:CDS 35.0%
TAGAGGTTCAGTCATATTTG+GGG - chr4.4:29874534-29874553 MS.gene56465:intron 35.0%
TATTAGAGATGCACTTGTTC+TGG - chr4.4:29877367-29877386 MS.gene56465:CDS 35.0%
TCAAATCCCATTCCAATCTT+TGG + chr4.4:29873788-29873807 None:intergenic 35.0%
TCGCTTAATTCTCTTTGAAC+CGG + chr4.4:29875764-29875783 None:intergenic 35.0%
TGACTTATCTTGTATTGTGG+TGG - chr4.4:29877400-29877419 MS.gene56465:CDS 35.0%
TGCACCAATACTAATCCAAA+TGG - chr4.4:29875140-29875159 MS.gene56465:intron 35.0%
TGCATTCATTCCATCCAAAT+AGG + chr4.4:29876299-29876318 None:intergenic 35.0%
TGGAAACCAAAGATTGGAAT+GGG - chr4.4:29873779-29873798 MS.gene56465:CDS 35.0%
TGGCTCAAGTTTCTTGATAA+TGG - chr4.4:29875610-29875629 MS.gene56465:intron 35.0%
TGTAAAGGAAAGTTAGAGAG+AGG - chr4.4:29877452-29877471 MS.gene56465:CDS 35.0%
TGTGCATTACAAAGGTTATG+AGG - chr4.4:29876663-29876682 MS.gene56465:CDS 35.0%
TTACAAGCTGTGAGTTTACA+TGG - chr4.4:29877522-29877541 MS.gene56465:CDS 35.0%
TTATTAATGCAGGCAATAGG+GGG - chr4.4:29876268-29876287 MS.gene56465:intron 35.0%
TTCATTCCATCCAAATAGGT+TGG + chr4.4:29876295-29876314 None:intergenic 35.0%
TTCTCGTAAGAATGGAAAGT+TGG - chr4.4:29874027-29874046 MS.gene56465:CDS 35.0%
TTGGAAACCAAAGATTGGAA+TGG - chr4.4:29873778-29873797 MS.gene56465:CDS 35.0%
TTGGATGGAATGAATGCATA+GGG - chr4.4:29876301-29876320 MS.gene56465:intron 35.0%
TTTGGATGGAATGAATGCAT+AGG - chr4.4:29876300-29876319 MS.gene56465:intron 35.0%
! AAATTTACTAGCCTCTTCCA+TGG + chr4.4:29873813-29873832 None:intergenic 35.0%
! AAGTAATAGCAGCTTTGTCA+AGG + chr4.4:29876018-29876037 None:intergenic 35.0%
! AAGTGATGGAGTTTGAAACA+CGG + chr4.4:29875336-29875355 None:intergenic 35.0%
! AGCAGCAAATGAAAAGCTTT+TGG + chr4.4:29876804-29876823 None:intergenic 35.0%
! AGTTTGGAATTAAAGTTGGG+AGG - chr4.4:29877074-29877093 MS.gene56465:intron 35.0%
! ATTGGCAACATCTAAGTTGA+CGG - chr4.4:29876866-29876885 MS.gene56465:intron 35.0%
! CACAGATGATTTTGGATTAC+GGG - chr4.4:29874418-29874437 MS.gene56465:intron 35.0%
! CGAGAAAGTGTAATTCTTAC+AGG + chr4.4:29874013-29874032 None:intergenic 35.0%
! GCAAATGAAAAGCTTTTGGA+AGG + chr4.4:29876800-29876819 None:intergenic 35.0%
! GCACAGATGATTTTGGATTA+CGG - chr4.4:29874417-29874436 MS.gene56465:intron 35.0%
! GTTTGGAATTAAAGTTGGGA+GGG - chr4.4:29877075-29877094 MS.gene56465:intron 35.0%
! TCTGGTTTCAACCATTATAG+AGG - chr4.4:29874517-29874536 MS.gene56465:intron 35.0%
! TGGAAGAGGCTAGTAAATTT+TGG - chr4.4:29873813-29873832 MS.gene56465:CDS 35.0%
! TTTGGAATTAAAGTTGGGAG+GGG - chr4.4:29877076-29877095 MS.gene56465:intron 35.0%
!! ATGTCGATTGGTTTGTTGTA+AGG - chr4.4:29873913-29873932 MS.gene56465:CDS 35.0%
!! CCATTTTGAAAGAGTTGTTG+AGG - chr4.4:29875047-29875066 MS.gene56465:intron 35.0%
!! GACTCTGAAACTTCGATAAT+TGG + chr4.4:29877013-29877032 None:intergenic 35.0%
!! GATTGGTTTGTTGTAAGGAA+GGG - chr4.4:29873918-29873937 MS.gene56465:CDS 35.0%
!! TTTTAGAGATTACCACTAGG+GGG - chr4.4:29877194-29877213 MS.gene56465:intron 35.0%
!!! ACTGATGCTAGTTTTTTTGC+AGG - chr4.4:29877233-29877252 MS.gene56465:CDS 35.0%
!!! CTGTTTTTGCTGTTTTGTTC+TGG - chr4.4:29876366-29876385 MS.gene56465:CDS 35.0%
AAACTTGAGCCATTCTTCCT+TGG + chr4.4:29875602-29875621 None:intergenic 40.0%
AACTTGAGCCATTCTTCCTT+GGG + chr4.4:29875601-29875620 None:intergenic 40.0%
AAGTATGCGTATGGTGAGAT+TGG - chr4.4:29874288-29874307 MS.gene56465:intron 40.0%
AATCCTCACATAAGCTTGCA+AGG - chr4.4:29875103-29875122 MS.gene56465:intron 40.0%
AATCTTGCACAACGCCATAA+CGG + chr4.4:29875480-29875499 None:intergenic 40.0%
ACATCCGAACTCACAATTTC+TGG + chr4.4:29875712-29875731 None:intergenic 40.0%
ACATCTTGGGAACTTGATGA+AGG - chr4.4:29874750-29874769 MS.gene56465:intron 40.0%
ACCAGTGATGTGCATTACAA+AGG - chr4.4:29876655-29876674 MS.gene56465:CDS 40.0%
ACCTTTGTAATGCACATCAC+TGG + chr4.4:29876659-29876678 None:intergenic 40.0%
ACTCCATCACTTGTAGTTGT+AGG - chr4.4:29875344-29875363 MS.gene56465:CDS 40.0%
ACTTGATCCTCATGTACTTG+TGG + chr4.4:29876153-29876172 None:intergenic 40.0%
AGGCAAAACATGAAGGATCT+TGG - chr4.4:29875296-29875315 MS.gene56465:CDS 40.0%
AGGGCTGCATGTTATATGAA+GGG - chr4.4:29874922-29874941 MS.gene56465:intron 40.0%
AGTGTGGTGCAATGTTGTAA+AGG - chr4.4:29877437-29877456 MS.gene56465:CDS 40.0%
ATAACAACTTAGCAGAGGTG+TGG + chr4.4:29876585-29876604 None:intergenic 40.0%
ATGTTTGGTTGTGCACTAAC+AGG + chr4.4:29877146-29877165 None:intergenic 40.0%
CAATTACACAGCCATGCTAA+TGG - chr4.4:29876173-29876192 MS.gene56465:intron 40.0%
CATAAACCATGATGAGTCTC+GGG + chr4.4:29874700-29874719 None:intergenic 40.0%
CATCTTGGGAACTTGATGAA+GGG - chr4.4:29874751-29874770 MS.gene56465:intron 40.0%
CCTTTGGACAGTTAAACCTT+CGG - chr4.4:29877613-29877632 MS.gene56465:CDS 40.0%
CGCTTAATTCTCTTTGAACC+GGG + chr4.4:29875763-29875782 None:intergenic 40.0%
CTCATCATGGTTTATGCACA+TGG - chr4.4:29874704-29874723 MS.gene56465:intron 40.0%
CTGCTATAACAACTTAGCAG+AGG + chr4.4:29876590-29876609 None:intergenic 40.0%
CTTCCTACAACTACAAGTGA+TGG + chr4.4:29875350-29875369 None:intergenic 40.0%
CTTGATCCTCATGTACTTGT+GGG + chr4.4:29876152-29876171 None:intergenic 40.0%
GAAGACAGTGTGAACTGTTT+AGG + chr4.4:29876991-29877010 None:intergenic 40.0%
GCACAAGCTATGGACAATAA+CGG - chr4.4:29875670-29875689 MS.gene56465:CDS 40.0%
GCATAAACCATGATGAGTCT+CGG + chr4.4:29874701-29874720 None:intergenic 40.0%
TAACCTTGCAAGCTTATGTG+AGG + chr4.4:29875109-29875128 None:intergenic 40.0%
TAGTGTATCGTCATGTCGAT+TGG - chr4.4:29873901-29873920 MS.gene56465:CDS 40.0%
TATCCTTTAGCAGCTGCAAA+CGG + chr4.4:29877646-29877665 None:intergenic 40.0%
TATTAATGCAGGCAATAGGG+GGG - chr4.4:29876269-29876288 MS.gene56465:intron 40.0%
TCGGATGTTATGCAAGCAAA+GGG - chr4.4:29875724-29875743 MS.gene56465:CDS 40.0%
TCGTCCAGAAATTGTGAGTT+CGG - chr4.4:29875705-29875724 MS.gene56465:CDS 40.0%
TCTTGTTAGTGTGCTGTCTT+AGG - chr4.4:29876550-29876569 MS.gene56465:CDS 40.0%
TGGAATGGGATTTGATTCCA+TGG - chr4.4:29873793-29873812 MS.gene56465:CDS 40.0%
TGGATGGAATGAATGCATAG+GGG - chr4.4:29876302-29876321 MS.gene56465:intron 40.0%
TGGCATCTTCAGATGTTGAT+TGG - chr4.4:29873759-29873778 MS.gene56465:CDS 40.0%
TTCGGATGTTATGCAAGCAA+AGG - chr4.4:29875723-29875742 MS.gene56465:CDS 40.0%
TTGATCCTCATGTACTTGTG+GGG + chr4.4:29876151-29876170 None:intergenic 40.0%
! AACTTTTGAGCACACAAGCA+GGG - chr4.4:29874200-29874219 MS.gene56465:CDS 40.0%
! ATGGCGTTGTGCAAGATTTT+AGG - chr4.4:29875482-29875501 MS.gene56465:intron 40.0%
! GTGTGATGCACAGATGATTT+TGG - chr4.4:29874410-29874429 MS.gene56465:intron 40.0%
! TGGCGTTGTGCAAGATTTTA+GGG - chr4.4:29875483-29875502 MS.gene56465:intron 40.0%
! TTGGCAACATCTAAGTTGAC+GGG - chr4.4:29876867-29876886 MS.gene56465:intron 40.0%
!! ATGAAGGGAGTGTTAACACT+TGG - chr4.4:29874937-29874956 MS.gene56465:intron 40.0%
!! ATTGATTTGGCTCATGACTC+TGG - chr4.4:29874154-29874173 MS.gene56465:CDS 40.0%
!! CGATTGGTTTGTTGTAAGGA+AGG - chr4.4:29873917-29873936 MS.gene56465:CDS 40.0%
!! TATAGTTTCCGTGTTGGCTT+CGG - chr4.4:29873842-29873861 MS.gene56465:CDS 40.0%
!! TGTGCAAGATTTTAGGGGAA+AGG - chr4.4:29875489-29875508 MS.gene56465:intron 40.0%
!!! ATTTTGAGATTACCCCCTAG+TGG + chr4.4:29877209-29877228 None:intergenic 40.0%
!!! CTGCTGTTTTGTGTCTGTTA+TGG - chr4.4:29876407-29876426 MS.gene56465:CDS 40.0%
!!! TTTTTTCTTTAGGTGGAGCG+CGG + chr4.4:29875831-29875850 None:intergenic 40.0%
AAGCAAGTGGTCTATTGGCA+TGG + chr4.4:29874488-29874507 None:intergenic 45.0%
AAGCATCACCCAAGGAAGAA+TGG - chr4.4:29875590-29875609 MS.gene56465:intron 45.0%
AAGCTGTGAGTTTACATGGG+TGG - chr4.4:29877526-29877545 MS.gene56465:CDS 45.0%
AAGTGGTCTATTGGCATGGT+TGG + chr4.4:29874484-29874503 None:intergenic 45.0%
ACCAAGATCAAGCAATGGCA+AGG - chr4.4:29874656-29874675 MS.gene56465:intron 45.0%
ACCCCAAAAAATACCCACCA+TGG + chr4.4:29876626-29876645 None:intergenic 45.0%
ACTTGTGGGGACTCATAAGT+CGG + chr4.4:29876138-29876157 None:intergenic 45.0%
AGGTTCAGTCATATTTGGGG+CGG - chr4.4:29874537-29874556 MS.gene56465:intron 45.0%
ATCTTGCACAACGCCATAAC+GGG + chr4.4:29875479-29875498 None:intergenic 45.0%
CACTGACCAAGATCAAGCAA+TGG - chr4.4:29874651-29874670 MS.gene56465:intron 45.0%
CAGAGACAACACACATGCTT+CGG - chr4.4:29874095-29874114 MS.gene56465:CDS 45.0%
CAGGGCTGCATGTTATATGA+AGG - chr4.4:29874921-29874940 MS.gene56465:intron 45.0%
CCAAGATCAAGCAATGGCAA+GGG - chr4.4:29874657-29874676 MS.gene56465:intron 45.0%
CCCAAAAAATACCCACCATG+GGG + chr4.4:29876624-29876643 None:intergenic 45.0%
CCCCAAAAAATACCCACCAT+GGG + chr4.4:29876625-29876644 None:intergenic 45.0%
CCGAAGGTTTAACTGTCCAA+AGG + chr4.4:29877616-29877635 None:intergenic 45.0%
CGGATGTTATGCAAGCAAAG+GGG - chr4.4:29875725-29875744 MS.gene56465:CDS 45.0%
GATGGAATGAATGCATAGGG+GGG - chr4.4:29876304-29876323 MS.gene56465:intron 45.0%
GCAGAAAACAACCTGCAAAC+CGG + chr4.4:29876456-29876475 None:intergenic 45.0%
GGATGGAATGAATGCATAGG+GGG - chr4.4:29876303-29876322 MS.gene56465:intron 45.0%
GGGATTTGATTCCATGGAAG+AGG - chr4.4:29873799-29873818 MS.gene56465:CDS 45.0%
GGTACTAATTCAGCAAGCTC+AGG - chr4.4:29877254-29877273 MS.gene56465:CDS 45.0%
GGTTTAACTGTCCAAAGGAG+CGG + chr4.4:29877611-29877630 None:intergenic 45.0%
GTTGTAAGGAAGGGCTAAAG+AGG - chr4.4:29873927-29873946 MS.gene56465:CDS 45.0%
GTTTGCAGCTGCTAAAGGAT+AGG - chr4.4:29877645-29877664 MS.gene56465:CDS 45.0%
TAAGGAAGGGCTAAAGAGGA+AGG - chr4.4:29873931-29873950 MS.gene56465:CDS 45.0%
TATGCAAGCAAAGGGGTTCA+TGG - chr4.4:29875732-29875751 MS.gene56465:CDS 45.0%
TCGTGAGTGTGTGAGATGTT+TGG + chr4.4:29877161-29877180 None:intergenic 45.0%
TGGCTCATGACTCTGGATTA+AGG - chr4.4:29874161-29874180 MS.gene56465:CDS 45.0%
TGGTAACAAAGTGGCTCACA+TGG - chr4.4:29877556-29877575 MS.gene56465:CDS 45.0%
TGGTCAGTGAAGATCGTCTT+TGG + chr4.4:29874640-29874659 None:intergenic 45.0%
TTTAGGGGAAAGGAGGTTGA+AGG - chr4.4:29875499-29875518 MS.gene56465:intron 45.0%
! CAACTTTAGTTCCCCATGGT+GGG - chr4.4:29876610-29876629 MS.gene56465:CDS 45.0%
! CAACTTTTGAGCACACAAGC+AGG - chr4.4:29874199-29874218 MS.gene56465:CDS 45.0%
! GGCGTTGTGCAAGATTTTAG+GGG - chr4.4:29875484-29875503 MS.gene56465:intron 45.0%
! GTTGATTCACTTGCAGCTGA+TGG - chr4.4:29877578-29877597 MS.gene56465:CDS 45.0%
! TGTTTTCTGCTGTTCAGGCA+CGG - chr4.4:29876466-29876485 MS.gene56465:CDS 45.0%
!! CAGGTTGTTTTCTGCTGTTC+AGG - chr4.4:29876461-29876480 MS.gene56465:CDS 45.0%
!! GCAAGATTTTAGGGGAAAGG+AGG - chr4.4:29875492-29875511 MS.gene56465:intron 45.0%
!!! CCCATGGTGGGTATTTTTTG+GGG - chr4.4:29876622-29876641 MS.gene56465:CDS 45.0%
!!! CCCCATGGTGGGTATTTTTT+GGG - chr4.4:29876621-29876640 MS.gene56465:CDS 45.0%
!!! TCCCCATGGTGGGTATTTTT+TGG - chr4.4:29876620-29876639 MS.gene56465:CDS 45.0%
AATAGGGGGGCCAACCTATT+TGG - chr4.4:29876282-29876301 MS.gene56465:intron 50.0%
AGCCAAAGCTTCAGCTACCA+GGG + chr4.4:29877348-29877367 None:intergenic 50.0%
ATGGTTCTCTTCCGCTCCTT+TGG - chr4.4:29877597-29877616 MS.gene56465:CDS 50.0%
CCCTTGCCATTGCTTGATCT+TGG + chr4.4:29874660-29874679 None:intergenic 50.0%
CTCTAACTCCGAAGCCAACA+CGG + chr4.4:29873853-29873872 None:intergenic 50.0%
CTTGGGAACTTGATGAAGGG+AGG - chr4.4:29874754-29874773 MS.gene56465:intron 50.0%
GCAGGGCATAGAGCTAATGT+TGG - chr4.4:29874217-29874236 MS.gene56465:CDS 50.0%
GGAGAGTGACTCTTTGAGTG+TGG - chr4.4:29877421-29877440 MS.gene56465:CDS 50.0%
GGCTCGTGATGGTAACAAAG+TGG - chr4.4:29877547-29877566 MS.gene56465:CDS 50.0%
TACCTTGGTATAGTGGTGGC+AGG - chr4.4:29877293-29877312 MS.gene56465:CDS 50.0%
TAGCCAAAGCTTCAGCTACC+AGG + chr4.4:29877349-29877368 None:intergenic 50.0%
TCTCCGTTTGCAGCTGCTAA+AGG - chr4.4:29877640-29877659 MS.gene56465:CDS 50.0%
TGAGTCCCCACAAGTACATG+AGG - chr4.4:29876143-29876162 MS.gene56465:intron 50.0%
TGCAAACGGAGAGAATCCGA+AGG + chr4.4:29877632-29877651 None:intergenic 50.0%
TGGACAAGAGAAGCCCGTTA+TGG - chr4.4:29875463-29875482 MS.gene56465:intron 50.0%
TTTACATGGGTGGCTCGTGA+TGG - chr4.4:29877536-29877555 MS.gene56465:CDS 50.0%
! GCAACTTTAGTTCCCCATGG+TGG - chr4.4:29876609-29876628 MS.gene56465:CDS 50.0%
! GCAGCAACTTTAGTTCCCCA+TGG - chr4.4:29876606-29876625 MS.gene56465:CDS 50.0%
!!! AGGCACGGTTTTTTGGAGCA+TGG - chr4.4:29876481-29876500 MS.gene56465:CDS 50.0%
!!! GCTGTTCAGGCACGGTTTTT+TGG - chr4.4:29876474-29876493 MS.gene56465:CDS 50.0%
!!! GGCACGGTTTTTTGGAGCAT+GGG - chr4.4:29876482-29876501 MS.gene56465:CDS 50.0%
AAGGGGTTCATGGTACGACC+CGG - chr4.4:29875742-29875761 MS.gene56465:CDS 55.0%
AGCCTGCCACCACTATACCA+AGG + chr4.4:29877298-29877317 None:intergenic 55.0%
CTAACAGGCCTGCATTTGCG+CGG + chr4.4:29877102-29877121 None:intergenic 55.0%
GGAACTTCGCGCACAAGCTA+TGG - chr4.4:29875660-29875679 MS.gene56465:CDS 55.0%
GTGATGCCCGAGACTCATCA+TGG - chr4.4:29874691-29874710 MS.gene56465:intron 55.0%
TGCCCTGGTAGCTGAAGCTT+TGG - chr4.4:29877343-29877362 MS.gene56465:CDS 55.0%
TGTGGGGACTCATAAGTCGG+AGG + chr4.4:29876135-29876154 None:intergenic 55.0%
! AGGCTCAGCTCGTGCTTTTG+TGG - chr4.4:29877313-29877332 MS.gene56465:CDS 55.0%
! GGCAACTGAAGCATCACCCA+AGG - chr4.4:29875582-29875601 MS.gene56465:intron 55.0%
! GGCATGGTTGGTACAGTACG+TGG + chr4.4:29874472-29874491 None:intergenic 55.0%
AGCTTCAGCTACCAGGGCAG+AGG + chr4.4:29877342-29877361 None:intergenic 60.0%
CTTCAGCTACCAGGGCAGAG+GGG + chr4.4:29877340-29877359 None:intergenic 60.0%
GCTTCAGCTACCAGGGCAGA+GGG + chr4.4:29877341-29877360 None:intergenic 60.0%
GGGGGGCCAACCTATTTGGA+TGG - chr4.4:29876286-29876305 MS.gene56465:intron 60.0%
TATGGCCGCTGCAAGTGCCT+GGG - chr4.4:29876425-29876444 MS.gene56465:CDS 60.0%
TTATGGCCGCTGCAAGTGCC+TGG - chr4.4:29876424-29876443 MS.gene56465:CDS 60.0%
TTCAGCTACCAGGGCAGAGG+GGG + chr4.4:29877339-29877358 None:intergenic 60.0%
! ATGAATGCATAGGGGGGCGC+TGG - chr4.4:29876310-29876329 MS.gene56465:intron 60.0%
AACCCCCCAGGCACTTGCAG+CGG + chr4.4:29876433-29876452 None:intergenic 65.0%
ATGGCCGCTGCAAGTGCCTG+GGG - chr4.4:29876426-29876445 MS.gene56465:CDS 65.0%
TGCAAGTGCCTGGGGGGTTC+CGG - chr4.4:29876434-29876453 MS.gene56465:CDS 65.0%
! TTTTGTGGCCCCCTCTGCCC+TGG - chr4.4:29877328-29877347 MS.gene56465:CDS 65.0%
CCTGCAAACCGGAACCCCCC+AGG + chr4.4:29876445-29876464 None:intergenic 70.0%
TGGCCGCTGCAAGTGCCTGG+GGG - chr4.4:29876427-29876446 MS.gene56465:CDS 70.0%
! CCTGGGGGGTTCCGGTTTGC+AGG - chr4.4:29876442-29876461 MS.gene56465:CDS 70.0%
GGCCGCTGCAAGTGCCTGGG+GGG - chr4.4:29876428-29876447 MS.gene56465:CDS 75.0%
GGGAGGGGCCGCGCAAATGC+AGG - chr4.4:29877091-29877110 MS.gene56465:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 29873758 29877721 29873758 ID=MS.gene56465
chr4.4 mRNA 29873758 29877721 29873758 ID=MS.gene56465.t1;Parent=MS.gene56465
chr4.4 exon 29877224 29877721 29877224 ID=MS.gene56465.t1.exon1;Parent=MS.gene56465.t1
chr4.4 CDS 29877224 29877721 29877224 ID=cds.MS.gene56465.t1;Parent=MS.gene56465.t1
chr4.4 exon 29876355 29876860 29876355 ID=MS.gene56465.t1.exon2;Parent=MS.gene56465.t1
chr4.4 CDS 29876355 29876860 29876355 ID=cds.MS.gene56465.t1;Parent=MS.gene56465.t1
chr4.4 exon 29875621 29876119 29875621 ID=MS.gene56465.t1.exon3;Parent=MS.gene56465.t1
chr4.4 CDS 29875621 29876119 29875621 ID=cds.MS.gene56465.t1;Parent=MS.gene56465.t1
chr4.4 exon 29875285 29875371 29875285 ID=MS.gene56465.t1.exon4;Parent=MS.gene56465.t1
chr4.4 CDS 29875285 29875371 29875285 ID=cds.MS.gene56465.t1;Parent=MS.gene56465.t1
chr4.4 exon 29873758 29874279 29873758 ID=MS.gene56465.t1.exon5;Parent=MS.gene56465.t1
chr4.4 CDS 29873758 29874279 29873758 ID=cds.MS.gene56465.t1;Parent=MS.gene56465.t1
Gene Sequence

>MS.gene56465

ATGGCATCTTCAGATGTTGATTGGAAACCAAAGATTGGAATGGGATTTGATTCCATGGAAGAGGCTAGTAAATTTTGGCATGATTATAGTTTCCGTGTTGGCTTCGGAGTTAGAGTACGTTTCACAAACAAAAAAGAAGACGGTAGTGTATCGTCATGTCGATTGGTTTGTTGTAAGGAAGGGCTAAAGAGGAAGGAGAAAAGATATGCATATGAAGGAAAATATACGAGAGCCGATATTAGAACAAATTGCCCTGTAAGAATTACACTTTCTCGTAAGAATGGAAAGTTGGTCATCCATGACTTTGAAGAAGAACATAACCATGATCTACAAAATTCAGAGACAACACACATGCTTCGGTCACATAGAAAGATAACTGAAGTGCAAGCATATGAGATTGATTTGGCTCATGACTCTGGATTAAGGCAGAAGTCAACATTTCAACTTTTGAGCACACAAGCAGGGCATAGAGCTAATGTTGGATTTACAGAGGTGGATGTAAGAAACTACATCAGTGAAAGAAGAAAAAGAAGTATGCGTATGGTGAGATTGGATGTCTTTCACGATATTTTCAACGACAATTGTTGGAGAATCCATCCTTTTTTCATGCATATCAGATGGATGTAGAAGAACATATTACAAATGTGTTTTAGTGTGATGCACAGATGATTTTGGATTACGGGTATTTTGGTGATGTTGTTTCTTTGGACACCACGTACTGTACCAACCATGCCAATAGACCACTTGCTTTTTTTTTTTTCTGGTTTCAACCATTATAGAGGTTCAGTCATATTTGGGGCGGCACTAATGTATGATGAGACAAGTGAGTCATTTAGATGGTTGTTTGATACATTCTTACAGGCACACAACAACAAAAAACCAAAGACGATCTTCACTGACCAAGATCAAGCAATGGCAAGGGCAGTTGCAGATGTGATGCCCGAGACTCATCATGGTTTATGCACATGGCATTTGTTACAAAATGGAGTTAAACATCTTGGGAACTTGATGAAGGGAGGATCTTCGTTGCTTAGTGATATCAAAAAATGCATGTATGATATTGACATTGAAGCAGATTTTGAGAAACTTTGGTTTGACATGATCCACGAATTTAATATTCACGACAAATCTTGGATCAAGTCCACTTATGAACTTAAAAAAAACAGGGCTGCATGTTATATGAAGGGAGTGTTAACACTTGGCATCCGTAGTACACAAGTTAGTGAAAGTTTGAATGCTCACTTTAAGTCTTGTATGAAACAGAATGTGAATATCCTAGAATTCTTCAACCATTTTGAAAGAGTTGTTGAGGACAAGAGAGCAAAAGAATTGAGTTGTGTGTATGAATCCTCACATAAGCTTGCAAGGTTAGCATATGAAACTGCACCAATACTAATCCAAATGGGAAAAATATACACACACACACACACACACACACACTGTATTTGAATTATTTCAAGATGAGTTTAAGTTATTCTTAACTTTAAATGTACCAACTAGACATGAATCTGAATCTCTTTGTGAATATGTCATCACTAAGGCAAAACATGAAGGATCTTGGAGAGTTTCATTTAACCGTGTTTCAAACTCCATCACTTGTAGTTGTAGGAAGTTTGATACTTTTGGCATACTTTGTTCACATGCTTTAAAAGTGTTTGAATTGAATGATGTTAAGGTAGTTCCTGAGAACTATATTTTAAAAAGGTGGACAAGAGAAGCCCGTTATGGCGTTGTGCAAGATTTTAGGGGAAAGGAGGTTGAAGGAGATCCTAACTTGTCTAGAAATCGAATGTTCAGACAAGTTGTCTCTAAGTTCATTAAAGCGGCAACTGAAGCATCACCCAAGGAAGAATGGCTCAAGTTTCTTGATAATGGTGTAGATGACATGTTCAAGAAAATAATGGAACTTCGCGCACAAGCTATGGACAATAACGGTGATAATGGTGCTCGTCCAGAAATTGTGAGTTCGGATGTTATGCAAGCAAAGGGGTTCATGGTACGACCCGGTTCAAAGAGAATTAAGCGATACAAAAGTTGTCTGGAAAAACAGCATAGTCGCGCTACATCTAGCCGCGCTCCACCTAAAGAAAAAAGTTCACAGGTATATGAGTTGGTATTTAGAGTACTTGTTTTAATTTTACTTGTTTTGGTGACTGTCCACCTATTTTCTGCTACTGTATGTTTATATGTTCAATAGAGATTATTTAAATTGAAGCACTAATATTAGTTATAGTATTATTATGTTATTGATCATATGCCTTGACAAAGCTGCTATTACTTGTTTATATTTTCTGCTACTGCCATGATTTTACATGTATCTTAGCTTAATAATTTTACATAATCATTTTAGGTTGATGGAGTATCTTGTTCTGCGCCTCCGACTTATGAGTCCCCACAAGTACATGAGGATCAAGTCAATTACACAGCCATGCTAATGGTAATTTCAAAAACAAATTCATAAGGAACTATTCATACATTTAACAAGTATCGTGATGCTAATTTTTAAGTTGTTATTAATGCAGGCAATAGGGGGGCCAACCTATTTGGATGGAATGAATGCATAGGGGGGCGCTGGCGCTGCGCTGCTGTTGTCATGACAGTGCAGCAACTGTTTTTGCTGTTTTGTTCTGGTTTGATACCTGTTTTTTGCTGCTGTTTTGTGTCTGTTATGGCCGCTGCAAGTGCCTGGGGGGTTCCGGTTTGCAGGTTGTTTTCTGCTGTTCAGGCACGGTTTTTTGGAGCATGGGAACTGTGTTTTTGCTGTTAAAACCACTTAGTAGTGTTATTTTGGCTCTTGTTAGTGTGCTGTCTTAGGATTGTGCAGCCACACCTCTGCTAAGTTGTTATAGCAGCAACTTTAGTTCCCCATGGTGGGTATTTTTTGGGGTATTTTTTGAACCAGTGATGTGCATTACAAAGGTTATGAGGAAATTAGTTAAAATCATGAATTTATGTAAGCTTTTGGAATATGGATATACTGGTTGTATGTACTGTAGTTAAATGATTAAAATTATTAACATGGTATTTCTTTGATTTGGTCCTTCCAAAAGCTTTTCATTTGCTGCTAAGTCACCACTCATTATTCTTTGCCTTAACTTTAAACTTAGAATTGGCAACATCTAAGTTGACGGGTTAAGACTTTGTTTATCATATCCTGAACAATTCTAAGTGAAGACTTCAACGATGCAATGCATTCAATATTAGTTAATATGGAACCAAATTAGATTATTCCTAAACAGTTCACACTGTCTTCCAATTATCGAAGTTTCAGAGTCACAGTGCTAGCTAGCAGACAAAGTGTTTTATTACACAAGTAAGTTTGGAATTAAAGTTGGGAGGGGCCGCGCAAATGCAGGCCTGTTAGTGAAACATATTATTATGCAGGCCTGTTAGTGCACAACCAAACATCTCACACACTCACGATAAAAAAAATGTTTTTTAGAGATTACCACTAGGGGGTAATCTCAAAATTAACACTGATGCTAGTTTTTTTGCAGGTACTAATTCAGCAAGCTCAGGAGTTGTTGTTAGAAATTACCTTGGTATAGTGGTGGCAGGCTCAGCTCGTGCTTTTGTGGCCCCCTCTGCCCTGGTAGCTGAAGCTTTGGCTATTAGAGATGCACTTGTTCTGGCCTACAACCTTGACTTATCTTGTATTGTGGTGGAGAGTGACTCTTTGAGTGTGGTGCAATGTTGTAAAGGAAAGTTAGAGAGAGGTCAGATCACTGCTATAATCAATGACATTCTCTTTCTAAAAGAAAGTTTTACAAGCTGTGAGTTTACATGGGTGGCTCGTGATGGTAACAAAGTGGCTCACATGGTTGATTCACTTGCAGCTGATGGTTCTCTTCCGCTCCTTTGGACAGTTAAACCTTCGGATTCTCTCCGTTTGCAGCTGCTAAAGGATAGGAGTAGAGCTATTAACAGAGTTCCCTTTCCAAGTGTTAACATTAATATAAGTTGA
Protein sequence

>MS.gene56465.t1

MASSDVDWKPKIGMGFDSMEEASKFWHDYSFRVGFGVRVRFTNKKEDGSVSSCRLVCCKEGLKRKEKRYAYEGKYTRADIRTNCPVRITLSRKNGKLVIHDFEEEHNHDLQNSETTHMLRSHRKITEVQAYEIDLAHDSGLRQKSTFQLLSTQAGHRANVGFTEVDAHNNKKPKTIFTDQDQAMARAVADVMPETHHGLCTWHLLQNGVKHLGNLMKGGSSLLSDIKKCMYDIDIEADFEKLWFDMIHEFNIHDKSWIKSTYELKKNRAACYMKGVLTLGIRSTQVSESLNAHFKSCMKQNVNILEFFNHFERVVEDKRAKELSCVYESSHKLASCRKFDTFGILCSHALKVFELNDVKVVPENYILKRWTREARYGVVQDFRGKEVEGDPNLSRNRMFRQVVSKFIKAATEASPKEEWLKFLDNGVDDMFKKIMELRAQAMDNNGDNGARPEIVSSDVMQAKGFMVRPGSKRIKRYKSCLEKQHSRATSSRAPPKEKSSQVDGVSCSAPPTYESPQVHEDQVNYTAMLMRLPLGGNLKINTDASFFAGTNSASSGVVVRNYLGIVVAGSARAFVAPSALVAEALAIRDALVLAYNLDLSCIVVESDSLSVVQCCKGKLERGQITAIINDILFLKESFTSCEFTWVARDGNKVAHMVDSLAADGSLPLLWTVKPSDSLRLQLLKDRSRAINRVPFPSVNINIS