Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56533.t1 | AES89938.1 | 86.1 | 273 | 38 | 0 | 1 | 273 | 1 | 273 | 1.80E-120 | 442.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56533.t1 | Q9FXA3 | 31.9 | 119 | 74 | 3 | 156 | 267 | 183 | 301 | 1.5e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56533.t1 | G7JG89 | 86.1 | 273 | 38 | 0 | 1 | 273 | 1 | 273 | 1.3e-120 | 442.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56533.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56533.t1 | MTR_4g081980 | 88.278 | 273 | 32 | 0 | 1 | 273 | 1 | 273 | 1.10e-169 | 470 |
| MS.gene56533.t1 | MTR_4g085660 | 45.603 | 307 | 127 | 9 | 1 | 271 | 1 | 303 | 4.23e-63 | 201 |
| MS.gene56533.t1 | MTR_4g085700 | 45.130 | 308 | 120 | 9 | 1 | 267 | 1 | 300 | 5.98e-58 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56533.t1 | AT1G49770 | 32.000 | 250 | 112 | 5 | 76 | 267 | 52 | 301 | 1.85e-27 | 108 |
Find 41 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCACTGAAATTGCATTT+TGG | 0.191221 | 4.4:+30560461 | None:intergenic |
| TGACTTTAGATGATGATAAA+TGG | 0.249362 | 4.4:-30562842 | MS.gene56533:CDS |
| ACTTCAAATGCACTAGCTTT+TGG | 0.254586 | 4.4:-30561613 | MS.gene56533:CDS |
| AGCTAGCAGCAGGAGAAATT+AGG | 0.262683 | 4.4:-30560429 | MS.gene56533:CDS |
| TTCATCTCCGCAAATGTTAA+AGG | 0.277405 | 4.4:+30561564 | None:intergenic |
| AATGGTTCTTTGTTCTCATT+TGG | 0.286563 | 4.4:+30562762 | None:intergenic |
| GCTAGCAGCAGGAGAAATTA+GGG | 0.297310 | 4.4:-30560428 | MS.gene56533:CDS |
| CTCATTGATTCAATGTCTAA+TGG | 0.319505 | 4.4:+30562744 | None:intergenic |
| AACATCTTGTCCAATGATAA+TGG | 0.323511 | 4.4:-30561448 | MS.gene56533:CDS |
| GTAGCTGTTTCCATTATCAT+TGG | 0.365138 | 4.4:+30561438 | None:intergenic |
| CACATTGCTTCTTATTCACT+AGG | 0.390758 | 4.4:+30562694 | None:intergenic |
| ATTTGAAACTTACATGGGCT+TGG | 0.392532 | 4.4:+30561410 | None:intergenic |
| AAAATTGTTGTCAACAAGCT+TGG | 0.434592 | 4.4:+30561511 | None:intergenic |
| AATGTTACCTTTAACATTTG+CGG | 0.450475 | 4.4:-30561571 | MS.gene56533:CDS |
| GATTCCTCATCTTACTTACA+AGG | 0.453723 | 4.4:-30562517 | MS.gene56533:intron |
| ATTTGGTTTATCAGAAATGA+AGG | 0.457704 | 4.4:+30562779 | None:intergenic |
| AAAACAAACTCTAGAAAAGC+TGG | 0.462688 | 4.4:-30561722 | MS.gene56533:CDS |
| AATGAGCCAAAATGTAGAAA+AGG | 0.465109 | 4.4:-30562727 | MS.gene56533:CDS |
| GATAAGGGAAAAGATAGAAA+TGG | 0.474599 | 4.4:-30562627 | MS.gene56533:CDS |
| ATGTGTGAAAATCAATCATC+GGG | 0.496092 | 4.4:-30562804 | MS.gene56533:CDS |
| TAAGAAGCAATGTGAGGGAG+GGG | 0.496799 | 4.4:-30562685 | MS.gene56533:CDS |
| ATGCACTTGCTGAGAGAGAA+AGG | 0.498912 | 4.4:-30562581 | MS.gene56533:CDS |
| ATTATCATTGGACAAGATGT+TGG | 0.503413 | 4.4:+30561450 | None:intergenic |
| GAAAGTTACAAGCTAGCAGC+AGG | 0.519236 | 4.4:-30560439 | MS.gene56533:CDS |
| AATAAGAAGCAATGTGAGGG+AGG | 0.525488 | 4.4:-30562687 | MS.gene56533:CDS |
| ACATTGCTTCTTATTCACTA+GGG | 0.529713 | 4.4:+30562695 | None:intergenic |
| TTTGGTTTATCAGAAATGAA+GGG | 0.532763 | 4.4:+30562780 | None:intergenic |
| CATGTGTGAAAATCAATCAT+CGG | 0.538236 | 4.4:-30562805 | MS.gene56533:CDS |
| TTTATCATCATCTAAAGTCA+TGG | 0.573233 | 4.4:+30562845 | None:intergenic |
| ATAAGAAGCAATGTGAGGGA+GGG | 0.586200 | 4.4:-30562686 | MS.gene56533:CDS |
| TTGGTTTATCAGAAATGAAG+GGG | 0.597449 | 4.4:+30562781 | None:intergenic |
| TTTACCTTGTAAGTAAGATG+AGG | 0.598129 | 4.4:+30562513 | None:intergenic |
| CTTCACTGCTTCCTCCACAA+TGG | 0.599469 | 4.4:+30561759 | None:intergenic |
| GTGAATAAGAAGCAATGTGA+GGG | 0.611245 | 4.4:-30562690 | MS.gene56533:CDS |
| CCAAAATGCAATTTCAGTGG+AGG | 0.613831 | 4.4:-30560461 | MS.gene56533:CDS |
| AAGCCAAAATGCAATTTCAG+TGG | 0.614102 | 4.4:-30560464 | MS.gene56533:CDS |
| GGTAGATTCTGTAACCATTG+TGG | 0.628284 | 4.4:-30561773 | MS.gene56533:CDS |
| AGATTCTGTAACCATTGTGG+AGG | 0.646571 | 4.4:-30561770 | MS.gene56533:CDS |
| CTAGCAGCAGGAGAAATTAG+GGG | 0.652318 | 4.4:-30560427 | MS.gene56533:CDS |
| AGTGAATAAGAAGCAATGTG+AGG | 0.680971 | 4.4:-30562691 | MS.gene56533:CDS |
| CACTTGCTGAGAGAGAAAGG+AGG | 0.730053 | 4.4:-30562578 | MS.gene56533:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAAAAAAAAGT+TGG | + | chr4.4:30562554-30562573 | None:intergenic | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | - | chr4.4:30560618-30560637 | MS.gene56533:intron | 10.0% |
| !! | TTTAAATGTTAAAAATGATA+AGG | - | chr4.4:30560617-30560636 | MS.gene56533:intron | 10.0% |
| !!! | AGTTTTTCATTTTTTTTTTT+TGG | + | chr4.4:30562657-30562676 | None:intergenic | 10.0% |
| !! | TCAAAAAATATATATCTGAA+AGG | + | chr4.4:30560908-30560927 | None:intergenic | 15.0% |
| !! | TTATATGAAAAGAGATTAAT+CGG | + | chr4.4:30561356-30561375 | None:intergenic | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | + | chr4.4:30560818-30560837 | None:intergenic | 15.0% |
| !!! | ACCTTAGTAATTTAAAATTT+AGG | + | chr4.4:30561236-30561255 | None:intergenic | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | - | chr4.4:30560773-30560792 | MS.gene56533:intron | 15.0% |
| !!! | TGCTTTGTTTTAAAATTTTT+TGG | - | chr4.4:30561462-30561481 | MS.gene56533:CDS | 15.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | - | chr4.4:30561171-30561190 | MS.gene56533:intron | 20.0% |
| !! | TTAATACAACAAAAAAAGGT+CGG | - | chr4.4:30561280-30561299 | MS.gene56533:intron | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | + | chr4.4:30561859-30561878 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | + | chr4.4:30562482-30562501 | None:intergenic | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | + | chr4.4:30561858-30561877 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTTCTTTGTACTA+TGG | - | chr4.4:30560997-30561016 | MS.gene56533:intron | 20.0% |
| !!! | GCCTAAATTTTAAATTACTA+AGG | - | chr4.4:30561232-30561251 | MS.gene56533:intron | 20.0% |
| !!! | TAGTAATTTAAAATTTAGGC+CGG | + | chr4.4:30561232-30561251 | None:intergenic | 20.0% |
| !!! | TTGTTTTAAAATTTTTTGGC+AGG | - | chr4.4:30561466-30561485 | MS.gene56533:CDS | 20.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | - | chr4.4:30561689-30561708 | MS.gene56533:CDS | 25.0% |
| ! | AGATTAATCGGTAAGAAATA+GGG | + | chr4.4:30561344-30561363 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | + | chr4.4:30561434-30561453 | None:intergenic | 25.0% |
| ! | CAGATTTAAACTGTGAATAA+TGG | + | chr4.4:30562012-30562031 | None:intergenic | 25.0% |
| ! | CGGATTAATACAACAAAAAA+AGG | - | chr4.4:30561276-30561295 | MS.gene56533:intron | 25.0% |
| ! | TAATACAACAAAAAAAGGTC+GGG | - | chr4.4:30561281-30561300 | MS.gene56533:intron | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | - | chr4.4:30560418-30560437 | MS.gene56533:CDS | 25.0% |
| ! | TTATTTCATTATCCACAATG+TGG | - | chr4.4:30562716-30562735 | MS.gene56533:CDS | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | + | chr4.4:30561140-30561159 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | + | chr4.4:30560484-30560503 | None:intergenic | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | - | chr4.4:30562312-30562331 | MS.gene56533:intron | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | - | chr4.4:30562123-30562142 | MS.gene56533:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | + | chr4.4:30562481-30562500 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | + | chr4.4:30562519-30562538 | None:intergenic | 25.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | + | chr4.4:30560418-30560437 | None:intergenic | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | + | chr4.4:30560483-30560502 | None:intergenic | 25.0% |
| !!! | AAAATAATTTTGACTACCTC+CGG | - | chr4.4:30561210-30561229 | MS.gene56533:intron | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | - | chr4.4:30561139-30561158 | MS.gene56533:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | - | chr4.4:30562339-30562358 | MS.gene56533:intron | 25.0% |
| !!! | TTTTTGTTGTATTAATCCGT+TGG | + | chr4.4:30561275-30561294 | None:intergenic | 25.0% |
| AAAATTGTTGTCAACAAGCT+TGG | + | chr4.4:30561752-30561771 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | - | chr4.4:30562493-30562512 | MS.gene56533:intron | 30.0% | |
| AACATCTTGTCCAATGATAA+TGG | - | chr4.4:30561812-30561831 | MS.gene56533:intron | 30.0% | |
| AATGAGCCAAAATGTAGAAA+AGG | - | chr4.4:30560533-30560552 | MS.gene56533:intron | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | + | chr4.4:30560501-30560520 | None:intergenic | 30.0% | |
| ACATTGCTTCTTATTCACTA+GGG | + | chr4.4:30560568-30560587 | None:intergenic | 30.0% | |
| ACTTTGATGTCAATGATCAT+CGG | - | chr4.4:30562277-30562296 | MS.gene56533:intron | 30.0% | |
| AGTTATTTACATCCACATTG+TGG | + | chr4.4:30562731-30562750 | None:intergenic | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | - | chr4.4:30561414-30561433 | MS.gene56533:intron | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | - | chr4.4:30560456-30560475 | MS.gene56533:CDS | 30.0% | |
| ATTATCATTGGACAAGATGT+TGG | + | chr4.4:30561813-30561832 | None:intergenic | 30.0% | |
| CATGTGTGAAAATCAATCAT+CGG | - | chr4.4:30560455-30560474 | MS.gene56533:CDS | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | - | chr4.4:30561915-30561934 | MS.gene56533:intron | 30.0% | |
| GAGATTAATCGGTAAGAAAT+AGG | + | chr4.4:30561345-30561364 | None:intergenic | 30.0% | |
| GATAAGGGAAAAGATAGAAA+TGG | - | chr4.4:30560633-30560652 | MS.gene56533:intron | 30.0% | |
| GATTAATCGGTAAGAAATAG+GGG | + | chr4.4:30561343-30561362 | None:intergenic | 30.0% | |
| GTAGTCAAAGGATAAACTTT+AGG | + | chr4.4:30562493-30562512 | None:intergenic | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | - | chr4.4:30562188-30562207 | MS.gene56533:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | - | chr4.4:30562213-30562232 | MS.gene56533:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | + | chr4.4:30561962-30561981 | None:intergenic | 30.0% | |
| TGTGCTCAAAATTAGTGTTT+AGG | - | chr4.4:30562187-30562206 | MS.gene56533:intron | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | + | chr4.4:30560482-30560501 | None:intergenic | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | + | chr4.4:30560750-30560769 | None:intergenic | 30.0% | |
| ! | AAAACAAACTCTAGAAAAGC+TGG | - | chr4.4:30561538-30561557 | MS.gene56533:CDS | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | + | chr4.4:30561137-30561156 | None:intergenic | 30.0% |
| ! | AGTGACATGCAAATTTTTCT+TGG | + | chr4.4:30561078-30561097 | None:intergenic | 30.0% |
| ! | CAAATATGGACTTTTCTCAA+TGG | - | chr4.4:30561185-30561204 | MS.gene56533:intron | 30.0% |
| ! | CTTCTTCCTTTTCTACATTT+TGG | + | chr4.4:30560542-30560561 | None:intergenic | 30.0% |
| ! | GACAACAATTTTTCATGTGA+TGG | - | chr4.4:30561760-30561779 | MS.gene56533:CDS | 30.0% |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | - | chr4.4:30562226-30562245 | MS.gene56533:intron | 30.0% |
| ! | TAATTTAAAATTTAGGCCGG+AGG | + | chr4.4:30561229-30561248 | None:intergenic | 30.0% |
| !! | AAGATAGACGCTTTTTGTTT+AGG | - | chr4.4:30562390-30562409 | MS.gene56533:intron | 30.0% |
| !! | AGAACTTTTGTGATTTGTGT+CGG | - | chr4.4:30562156-30562175 | MS.gene56533:intron | 30.0% |
| !! | CTCATTGATTCAATGTCTAA+TGG | + | chr4.4:30560519-30560538 | None:intergenic | 30.0% |
| !! | TTGATTTGTGTTAATGTTGC+AGG | - | chr4.4:30562754-30562773 | MS.gene56533:CDS | 30.0% |
| !!! | TTTTAGTTTGAACTCGAAGA+TGG | - | chr4.4:30561622-30561641 | MS.gene56533:CDS | 30.0% |
| AAGCCAAAATGCAATTTCAG+TGG | - | chr4.4:30562796-30562815 | MS.gene56533:CDS | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | - | chr4.4:30560569-30560588 | MS.gene56533:intron | 35.0% | |
| CACATTGCTTCTTATTCACT+AGG | + | chr4.4:30560569-30560588 | None:intergenic | 35.0% | |
| CATCGGATTTATTTCAGTCA+TGG | - | chr4.4:30562294-30562313 | MS.gene56533:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | + | chr4.4:30562448-30562467 | None:intergenic | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | + | chr4.4:30562096-30562115 | None:intergenic | 35.0% | |
| GAGAAAGGAGGAAAAAAATG+AGG | - | chr4.4:30560694-30560713 | MS.gene56533:intron | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | - | chr4.4:30560743-30560762 | MS.gene56533:intron | 35.0% | |
| GTACTTGTAGAGTAATTTGG+AGG | - | chr4.4:30561918-30561937 | MS.gene56533:intron | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | - | chr4.4:30560570-30560589 | MS.gene56533:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | + | chr4.4:30562699-30562718 | None:intergenic | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | - | chr4.4:30562449-30562468 | MS.gene56533:intron | 35.0% | |
| TGCATGTCACTCAACATATA+CGG | - | chr4.4:30561087-30561106 | MS.gene56533:intron | 35.0% | |
| TTCATCTCCGCAAATGTTAA+AGG | + | chr4.4:30561699-30561718 | None:intergenic | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | - | chr4.4:30562433-30562452 | MS.gene56533:intron | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | - | chr4.4:30562448-30562467 | MS.gene56533:intron | 35.0% | |
| TTTGTTCTTTGTACTATGGC+AGG | - | chr4.4:30561001-30561020 | MS.gene56533:intron | 35.0% | |
| ! | ATTTGAAACTTACATGGGCT+TGG | + | chr4.4:30561853-30561872 | None:intergenic | 35.0% |
| ! | CTCTTTTCACAAAGAACCAA+CGG | - | chr4.4:30561256-30561275 | MS.gene56533:intron | 35.0% |
| ! | GTAGCTGTTTCCATTATCAT+TGG | + | chr4.4:30561825-30561844 | None:intergenic | 35.0% |
| !! | CTTGGTGCACATTTTATGAA+AGG | + | chr4.4:30560855-30560874 | None:intergenic | 35.0% |
| !!! | ACTTCAAATGCACTAGCTTT+TGG | - | chr4.4:30561647-30561666 | MS.gene56533:CDS | 35.0% |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | - | chr4.4:30562241-30562260 | MS.gene56533:intron | 35.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | - | chr4.4:30561978-30561997 | MS.gene56533:intron | 40.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | - | chr4.4:30560573-30560592 | MS.gene56533:intron | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | - | chr4.4:30561490-30561509 | MS.gene56533:CDS | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | - | chr4.4:30560574-30560593 | MS.gene56533:intron | 40.0% | |
| CCAAAATGCAATTTCAGTGG+AGG | - | chr4.4:30562799-30562818 | MS.gene56533:CDS | 40.0% | |
| CGATTCATGGAGGTTCATAT+AGG | + | chr4.4:30561127-30561146 | None:intergenic | 40.0% | |
| GGTAGATTCTGTAACCATTG+TGG | - | chr4.4:30561487-30561506 | MS.gene56533:CDS | 40.0% | |
| TTAGACCAAAACACTCTTCG+AGG | + | chr4.4:30560879-30560898 | None:intergenic | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | + | chr4.4:30562802-30562821 | None:intergenic | 40.0% |
| !!! | CACTAGCTTTTGGACAAATG+TGG | - | chr4.4:30561657-30561676 | MS.gene56533:CDS | 40.0% |
| ACAACAAAAAAAGGTCGGGC+AGG | - | chr4.4:30561285-30561304 | MS.gene56533:intron | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | - | chr4.4:30562831-30562850 | MS.gene56533:CDS | 45.0% | |
| ATGACACATCCACGACACTA+CGG | + | chr4.4:30562367-30562386 | None:intergenic | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | + | chr4.4:30560873-30560892 | None:intergenic | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | - | chr4.4:30562833-30562852 | MS.gene56533:CDS | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | - | chr4.4:30562821-30562840 | MS.gene56533:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | - | chr4.4:30562832-30562851 | MS.gene56533:CDS | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | + | chr4.4:30562441-30562460 | None:intergenic | 45.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | - | chr4.4:30560575-30560594 | MS.gene56533:intron | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | + | chr4.4:30562505-30562524 | None:intergenic | 45.0% | |
| ! | ATGCACTTGCTGAGAGAGAA+AGG | - | chr4.4:30560679-30560698 | MS.gene56533:intron | 45.0% |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | - | chr4.4:30560871-30560890 | MS.gene56533:intron | 45.0% |
| ACAAAAAAAGGTCGGGCAGG+AGG | - | chr4.4:30561288-30561307 | MS.gene56533:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | + | chr4.4:30561504-30561523 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | + | chr4.4:30562366-30562385 | None:intergenic | 50.0% | |
| ! | CACTTGCTGAGAGAGAAAGG+AGG | - | chr4.4:30560682-30560701 | MS.gene56533:intron | 50.0% |
| CGGGCAGGAGGTAGAGATTA+GGG | - | chr4.4:30561300-30561319 | MS.gene56533:intron | 55.0% | |
| GACACATCCACGACACTACG+GGG | + | chr4.4:30562365-30562384 | None:intergenic | 55.0% | |
| TCGGGCAGGAGGTAGAGATT+AGG | - | chr4.4:30561299-30561318 | MS.gene56533:intron | 55.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | - | chr4.4:30562355-30562374 | MS.gene56533:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30560411 | 30562871 | 30560411 | ID=MS.gene56533 |
| chr4.4 | mRNA | 30560411 | 30562871 | 30560411 | ID=MS.gene56533.t1;Parent=MS.gene56533 |
| chr4.4 | exon | 30562518 | 30562871 | 30562518 | ID=MS.gene56533.t1.exon1;Parent=MS.gene56533.t1 |
| chr4.4 | CDS | 30562518 | 30562871 | 30562518 | ID=cds.MS.gene56533.t1;Parent=MS.gene56533.t1 |
| chr4.4 | exon | 30561423 | 30561794 | 30561423 | ID=MS.gene56533.t1.exon2;Parent=MS.gene56533.t1 |
| chr4.4 | CDS | 30561423 | 30561794 | 30561423 | ID=cds.MS.gene56533.t1;Parent=MS.gene56533.t1 |
| chr4.4 | exon | 30560411 | 30560506 | 30560411 | ID=MS.gene56533.t1.exon3;Parent=MS.gene56533.t1 |
| chr4.4 | CDS | 30560411 | 30560506 | 30560411 | ID=cds.MS.gene56533.t1;Parent=MS.gene56533.t1 |
| Gene Sequence |
| Protein sequence |
