AlfalfaGEDB | MS.gene56533

M. sativa cultivar XinJiangDaYe / MS.gene56533

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56533.t1	AES89938.1	86.1	273	38	0	1	273	1	273	1.80E-120	442.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56533.t1	Q9FXA3	31.9	119	74	3	156	267	183	301	1.5e-06	55.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56533.t1	G7JG89	86.1	273	38	0	1	273	1	273	1.3e-120	442.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene56533.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56533.t1	MTR_4g081980	88.278	273	32	0	1	273	1	273	1.10e-169	470
MS.gene56533.t1	MTR_4g085660	45.603	307	127	9	1	271	1	303	4.23e-63	201
MS.gene56533.t1	MTR_4g085700	45.130	308	120	9	1	267	1	300	5.98e-58	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56533.t1	AT1G49770	32.000	250	112	5	76	267	52	301	1.85e-27	108

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Find 41 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACTCTAGAAAAGC+TGG	0.462688	4.4:-30561722	MS.gene56533:CDS
AAAATTGTTGTCAACAAGCT+TGG	0.434592	4.4:+30561511	None:intergenic
AACATCTTGTCCAATGATAA+TGG	0.323511	4.4:-30561448	MS.gene56533:CDS
AAGCCAAAATGCAATTTCAG+TGG	0.614102	4.4:-30560464	MS.gene56533:CDS
AATAAGAAGCAATGTGAGGG+AGG	0.525488	4.4:-30562687	MS.gene56533:CDS
AATGAGCCAAAATGTAGAAA+AGG	0.465109	4.4:-30562727	MS.gene56533:CDS
AATGGTTCTTTGTTCTCATT+TGG	0.286563	4.4:+30562762	None:intergenic
AATGTTACCTTTAACATTTG+CGG	0.450475	4.4:-30561571	MS.gene56533:CDS
ACATTGCTTCTTATTCACTA+GGG	0.529713	4.4:+30562695	None:intergenic
ACTTCAAATGCACTAGCTTT+TGG	0.254586	4.4:-30561613	MS.gene56533:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGTTGTCAACAAGCT+TGG	+	chr4.4:30561752-30561771	None:intergenic	30.0%
AAAGTTTATCCTTTGACTAC+TGG	-	chr4.4:30562493-30562512	MS.gene56533:intron	30.0%
AACATCTTGTCCAATGATAA+TGG	-	chr4.4:30561812-30561831	MS.gene56533:intron	30.0%
AATGAGCCAAAATGTAGAAA+AGG	-	chr4.4:30560533-30560552	MS.gene56533:intron	30.0%
AATGGTTCTTTGTTCTCATT+TGG	+	chr4.4:30560501-30560520	None:intergenic	30.0%
ACATTGCTTCTTATTCACTA+GGG	+	chr4.4:30560568-30560587	None:intergenic	30.0%
ACTTTGATGTCAATGATCAT+CGG	-	chr4.4:30562277-30562296	MS.gene56533:intron	30.0%
AGTTATTTACATCCACATTG+TGG	+	chr4.4:30562731-30562750	None:intergenic	30.0%
ATGTATATATAGCAACACCT+AGG	-	chr4.4:30561414-30561433	MS.gene56533:intron	30.0%
ATGTGTGAAAATCAATCATC+GGG	-	chr4.4:30560456-30560475	MS.gene56533:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	30560411	30562871	30560411	ID=MS.gene56533
chr4.4	mRNA	30560411	30562871	30560411	ID=MS.gene56533.t1;Parent=MS.gene56533
chr4.4	exon	30562518	30562871	30562518	ID=MS.gene56533.t1.exon1;Parent=MS.gene56533.t1
chr4.4	CDS	30562518	30562871	30562518	ID=cds.MS.gene56533.t1;Parent=MS.gene56533.t1
chr4.4	exon	30561423	30561794	30561423	ID=MS.gene56533.t1.exon2;Parent=MS.gene56533.t1
chr4.4	CDS	30561423	30561794	30561423	ID=cds.MS.gene56533.t1;Parent=MS.gene56533.t1
chr4.4	exon	30560411	30560506	30560411	ID=MS.gene56533.t1.exon3;Parent=MS.gene56533.t1
chr4.4	CDS	30560411	30560506	30560411	ID=cds.MS.gene56533.t1;Parent=MS.gene56533.t1

Gene Sequence

>MS.gene56533

ATGGCCATGACTTTAGATGATGATAAATGGATTGATGAGTTTTTCATGTGTGAAAATCAATCATCGGGCCCCTTCATTTCTGATAAACCAAATGAGAACAAAGAACCATTAGACATTGAATCAATGAGCCAAAATGTAGAAAAGGAAGAAGAAACCCTAGTGAATAAGAAGCAATGTGAGGGAGGGGTTGCGAGTGAAAGTGATAATTTAAATGTTAAAAATGATAAGGGAAAAGATAGAAATGGTCGCATTTCTAGTCATGAAAAACATGCACTTGCTGAGAGAGAAAGGAGGAAAAAAATGAGGAGTATGTTAGATAGACTTCAAGATTTGATTCCTCATCTTACTTACAAGGTAAATTGATTACATTCATTTTTAAGATTGGTCAATTAGTTTAACGTTAACCATTTTTCAATGAAAATTTTGTGCATATTAATTCATCCTTTCATAAAATGTGCACCAAGTCCTCGAAGAGTGTTTTGGTCTAATTTTATCCTTTCAGATATATATTTTTTGAGATTTTCTAAGTAACACATTTTCAATTCACATGCTCAAAGTAATTTCTCAATATTCGAAGAGAACAAATATTTTTTGTTCTTTGTACTATGGCAGGACAACTCTAACTTTTTTTATTTCTAATCAATTTATCTGTCTACTATGTCATCCAAGAAAAATTTGCATGTCACTCAACATATACGGCAAAGATATTTGAACCTATATGAACCTCCATGAATCGATTCAATTTTGATGGAGTAATTCTGCTTTAACTAAATTCAAATATGGACTTTTCTCAATGGTCAAAATAATTTTGACTACCTCCGGCCTAAATTTTAAATTACTAAGGTCTCTTTTCACAAAGAACCAACGGATTAATACAACAAAAAAAGGTCGGGCAGGAGGTAGAGATTAGGGAGTTGATATCTGTCACGCCCCTATTTCTTACCGATTAATCTCTTTTCATATAAAATTAATTTTTATTTTATTTTCATATTGTCTAACAATTATGTATATATAGCAACACCTAGGTGTAACATTGATTTAATTACTAAGATGCTTTGTTTTAAAATTTTTTGGCAGGTAGATTCTGTAACCATTGTGGAGGAAGCAGTGAAGCACGTAATATATCTAAAACAAACTCTAGAAAAGCTGGAAATGCAGAAAAAAGAAAAGCTCAAATCATTTAGTGAAGCATTCACAGCTGATCAGAGATCTTTTAGTTTGAACTCGAAGATGGTAACTTCAAATGCACTAGCTTTTGGACAAATGTGGTTTTCTCAAAATGTTACCTTTAACATTTGCGGAGATGAAGCACAATTTTGCATATACACAACTAAGAAGCCAAGCTTGTTGACAACAATTTTTCATGTGATGGAGAAACATAAGATTGATGTCGTACATGCCAACATCTTGTCCAATGATAATGGAAACAGCTACATGATCCAAGCCCATGTAAGTTTCAAATTCAATTCTCATTTTATCGTGCGTTTTGTTTTCTTATATTATACTAGTACTTGTAGAGTAATTTGGAGGAATCTATGTGAATTTTAACCAATAGAAGAGAGTATGTAAGAATGTGTGTGTTCGAGAAGGTGTTCTTACCATTATTCACAGTTTAAATCTGTAACATAGCATATAGATTGATAAATTTAGTTAAAGTTTCTTTAGAAGATATGATTAAAACTCCATTTTTACGATTTCGCTTGAGACACGCTCATTTCTTTTGACAAAAAAGAGGTAGATGTAGAAGAACTTTTGTGATTTGTGTCGGCGATATAATGTGCTCAAAATTAGTGTTTAGGGTTTAAGTCTAAATGAGTGACTTAGGTTTTCTTTTTTGGTCTCGATGTTGACGGAAATCAATGTGAAACTTTGATGTCAATGATCATCGGATTTATTTCAGTCATGGATCTTTATTTAAGAAAGGTGTCTGTCATGAAAAGTTTTATTGCGGCCCCGTAGTGTCGTGGATGTGTCATACGAAGATAGACGCTTTTTGTTTAGGTTGAATGAATGACATTTTTTTTCTTCCTTAGTCCTTTCTTCGGAGAACAATAATGTGGGCTCAAACCCGTAAACAAACCTAAAGTTTATCCTTTGACTACTGGCCAGAAGAAAAGTATTTTGCTAACTAGCACAAGAGCCAACTTTTTTTTTTTTTTTTTGTGATAAGAGCAAACTTCATTGCAACAAATATTGACTATATAGCATATAGTATAGTAGAACATTTACATCAATATATTCAGCCAAAAAAAAAAAATGAAAAACTCAATATATACAACATTAAGCCGTGAGTACACATGCATCTTTATTTCATTATCCACAATGTGGATGTAAATAACTCAATTGATTTGTGTTAATGTTGCAGGTGAAACGAGCTACACATCAAAGCCAAAATGCAATTTCAGTGGAGGAAAGTTACAAGCTAGCAGCAGGAGAAATTAGGGGATTTTTAATATTTTGA

Protein sequence

>MS.gene56533.t1

MAMTLDDDKWIDEFFMCENQSSGPFISDKPNENKEPLDIESMSQNVEKEEETLVNKKQCEGGVASESDNLNVKNDKGKDRNGRISSHEKHALAERERRKKMRSMLDRLQDLIPHLTYKVDSVTIVEEAVKHVIYLKQTLEKLEMQKKEKLKSFSEAFTADQRSFSLNSKMVTSNALAFGQMWFSQNVTFNICGDEAQFCIYTTKKPSLLTTIFHVMEKHKIDVVHANILSNDNGNSYMIQAHVKRATHQSQNAISVEESYKLAAGEIRGFLIF