Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56770.t1 | XP_004509147.1 | 74 | 477 | 106 | 6 | 1 | 460 | 4 | 479 | 5.30E-186 | 660.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56770.t1 | Q0JP99 | 33.7 | 386 | 221 | 6 | 87 | 460 | 133 | 495 | 1.3e-52 | 208.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56770.t1 | A0A1S2YSD0 | 74.0 | 477 | 106 | 6 | 1 | 460 | 4 | 479 | 3.8e-186 | 660.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56770.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56770.t1 | MTR_2g102450 | 47.093 | 172 | 85 | 5 | 92 | 260 | 74 | 242 | 2.47e-37 | 140 |
| MS.gene56770.t1 | MTR_2g102450 | 47.093 | 172 | 85 | 5 | 92 | 260 | 128 | 296 | 6.47e-37 | 140 |
| MS.gene56770.t1 | MTR_3g101520 | 48.800 | 125 | 64 | 0 | 78 | 202 | 98 | 222 | 2.39e-36 | 134 |
| MS.gene56770.t1 | MTR_3g101520 | 48.800 | 125 | 64 | 0 | 78 | 202 | 106 | 230 | 3.60e-36 | 133 |
| MS.gene56770.t1 | MTR_4g008310 | 46.226 | 106 | 57 | 0 | 88 | 193 | 199 | 304 | 1.70e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56770.t1 | AT3G19184 | 51.282 | 117 | 57 | 0 | 79 | 195 | 103 | 219 | 4.22e-35 | 132 |
| MS.gene56770.t1 | AT3G19184 | 51.282 | 117 | 57 | 0 | 79 | 195 | 103 | 219 | 4.23e-35 | 132 |
| MS.gene56770.t1 | AT5G42700 | 52.586 | 116 | 51 | 1 | 81 | 196 | 64 | 175 | 6.21e-33 | 123 |
| MS.gene56770.t1 | AT5G42700 | 52.586 | 116 | 51 | 1 | 81 | 196 | 109 | 220 | 9.76e-33 | 124 |
| MS.gene56770.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 92 | 210 | 113 | 230 | 8.50e-26 | 106 |
| MS.gene56770.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 92 | 210 | 146 | 263 | 1.43e-25 | 106 |
| MS.gene56770.t1 | AT5G58280 | 45.378 | 119 | 64 | 1 | 92 | 210 | 145 | 262 | 1.54e-25 | 106 |
Find 61 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAACCCACCAAATTTA+AGG | 0.130382 | 8.2:-25864104 | MS.gene56770:intron |
| AGAAAGAAGTTGCTACTAAT+TGG | 0.229613 | 8.2:-25863075 | MS.gene56770:CDS |
| TTCACAAAACTAGGGAATTC+TGG | 0.261063 | 8.2:+25864518 | None:intergenic |
| TAAAAGACATTTACCTGATA+AGG | 0.319627 | 8.2:-25864269 | MS.gene56770:CDS |
| CCTTTCAACTCTTTAAATTC+AGG | 0.323706 | 8.2:+25863604 | None:intergenic |
| GTGATAGTTGTATCCTTATC+AGG | 0.331030 | 8.2:+25864256 | None:intergenic |
| CTCAGAGATTAGAAGATATA+TGG | 0.350074 | 8.2:-25863245 | MS.gene56770:CDS |
| ATTTGGTGGGTTCAATTAGT+TGG | 0.352601 | 8.2:+25864110 | None:intergenic |
| AATTTCAGAATCATAGTTGA+TGG | 0.381163 | 8.2:-25863574 | MS.gene56770:CDS |
| GTTAGCATAGCTTATGAAAC+TGG | 0.383960 | 8.2:-25863274 | MS.gene56770:CDS |
| TTGTGATTGTGTCTCATCTT+GGG | 0.385275 | 8.2:+25864744 | None:intergenic |
| GATTGCTCTGTATATTGTTT+AGG | 0.388560 | 8.2:+25863679 | None:intergenic |
| TTTGTGATTGTGTCTCATCT+TGG | 0.389027 | 8.2:+25864743 | None:intergenic |
| TTGATTGCAGTTCAACTAAA+GGG | 0.392484 | 8.2:-25864622 | MS.gene56770:intron |
| AACTATTACCTTAAATTTGG+TGG | 0.415378 | 8.2:+25864096 | None:intergenic |
| CGAAGGACTTCGATCACATT+TGG | 0.418810 | 8.2:-25864543 | MS.gene56770:CDS |
| ATCACATTAGAAGATGAATA+TGG | 0.425783 | 8.2:-25864238 | MS.gene56770:CDS |
| TTTGATTGCAGTTCAACTAA+AGG | 0.434875 | 8.2:-25864623 | MS.gene56770:intron |
| ACTGTGTTGTTCATTTCTAT+AGG | 0.440475 | 8.2:+25863222 | None:intergenic |
| CTTCATGACAATCTCATGAA+AGG | 0.455641 | 8.2:-25863475 | MS.gene56770:CDS |
| GTAGAGAGTTCTTCTTCGAT+TGG | 0.457108 | 8.2:+25863547 | None:intergenic |
| TTGCATTATAAGCTGATTGC+TGG | 0.457384 | 8.2:-25863451 | MS.gene56770:CDS |
| AACGAAGCTTGAAGAATTGA+AGG | 0.472041 | 8.2:-25863170 | MS.gene56770:CDS |
| CTATTACATGCTACAACATC+AGG | 0.475119 | 8.2:+25863784 | None:intergenic |
| CACAATCACAAAAGTTTGCA+AGG | 0.496554 | 8.2:-25864732 | MS.gene56770:intron |
| CCTGAATTTAAAGAGTTGAA+AGG | 0.513933 | 8.2:-25863604 | MS.gene56770:CDS |
| ACTATTACCTTAAATTTGGT+GGG | 0.516282 | 8.2:+25864097 | None:intergenic |
| TTTCCACGAAATGATGATCA+TGG | 0.525235 | 8.2:-25865665 | MS.gene56770:CDS |
| AGCAAGGACTTCACAAAACT+AGG | 0.525979 | 8.2:+25864509 | None:intergenic |
| AAATACATTGCATGTAAGAC+AGG | 0.526557 | 8.2:-25864199 | MS.gene56770:CDS |
| CAAATGTGATCGAAGTCCTT+CGG | 0.541447 | 8.2:+25864544 | None:intergenic |
| AGCTTTGTCAGAAATATTCG+AGG | 0.558647 | 8.2:-25863638 | MS.gene56770:CDS |
| ATTAATGTCGAAAATGGTGG+CGG | 0.572487 | 8.2:-25865735 | None:intergenic |
| GCAAGGACTTCACAAAACTA+GGG | 0.574234 | 8.2:+25864510 | None:intergenic |
| AGAGGATGAAATAAAGAACA+TGG | 0.576688 | 8.2:-25863194 | MS.gene56770:CDS |
| TCAGAATCATAGTTGATGGA+AGG | 0.576785 | 8.2:-25863570 | MS.gene56770:CDS |
| TCAACTAAAGGGGTAACAGA+TGG | 0.578200 | 8.2:-25864611 | MS.gene56770:CDS |
| GTATAAACAGAACAAGGCGG+TGG | 0.586932 | 8.2:-25865331 | MS.gene56770:CDS |
| TCTGCTGTGATTCACGCCGA+AGG | 0.597081 | 8.2:-25864560 | MS.gene56770:CDS |
| TGGCGGTTGATGAAAAGAAG+AGG | 0.598421 | 8.2:-25865718 | MS.gene56770:CDS |
| ACTCCATGATCATCATTTCG+TGG | 0.602909 | 8.2:+25865662 | None:intergenic |
| TGATTGCAGTTCAACTAAAG+GGG | 0.603233 | 8.2:-25864621 | MS.gene56770:intron |
| TGAAAAGAAGAGGGATCGAA+TGG | 0.606536 | 8.2:-25865708 | MS.gene56770:CDS |
| GAAAATGATTGTATCAAACA+TGG | 0.606925 | 8.2:-25863710 | MS.gene56770:CDS |
| GCTTTGTCAGAAATATTCGA+GGG | 0.608274 | 8.2:-25863637 | MS.gene56770:CDS |
| AGCTACATGTGATCTGAGCA+AGG | 0.622819 | 8.2:+25864493 | None:intergenic |
| GGCGGTTGATGAAAAGAAGA+GGG | 0.624988 | 8.2:-25865717 | MS.gene56770:CDS |
| TTAGGTTTATATAATAAGAG+CGG | 0.625618 | 8.2:-25863998 | MS.gene56770:intron |
| GCTGTGCATAAATTGCTAGA+AGG | 0.629013 | 8.2:-25864148 | MS.gene56770:CDS |
| AGACAGGATTGAGTGCTGGT+TGG | 0.629436 | 8.2:-25864183 | MS.gene56770:CDS |
| TGAACAACACAGTCGAGTAG+AGG | 0.629562 | 8.2:-25863212 | MS.gene56770:CDS |
| TGTAAGACAGGATTGAGTGC+TGG | 0.630499 | 8.2:-25864187 | MS.gene56770:CDS |
| TTTGCAGTATAAACAGAACA+AGG | 0.647255 | 8.2:-25865337 | MS.gene56770:intron |
| CATATATCTTCTAATCTCTG+AGG | 0.654771 | 8.2:+25863246 | None:intergenic |
| CAATTAGAAAATTCAACACG+CGG | 0.655244 | 8.2:+25863370 | None:intergenic |
| GAATTGAAGGAAGCTTGTAG+CGG | 0.658226 | 8.2:-25863157 | MS.gene56770:CDS |
| TGGAACATATTCTCGTGGCG+AGG | 0.659835 | 8.2:-25864591 | MS.gene56770:CDS |
| ACAGATGGAACATATTCTCG+TGG | 0.680750 | 8.2:-25864596 | MS.gene56770:CDS |
| TAAATTGCTAGAAGGTGATG+TGG | 0.696443 | 8.2:-25864140 | MS.gene56770:CDS |
| ATTGCTAGAAGGTGATGTGG+TGG | 0.703234 | 8.2:-25864137 | MS.gene56770:CDS |
| GCAGTATAAACAGAACAAGG+CGG | 0.787127 | 8.2:-25865334 | MS.gene56770:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTGTCATTTTATT+AGG | + | chr8.2:25864417-25864436 | None:intergenic | 10.0% |
| !!! | TCTTTTATTAGTTTTAATTT+TGG | - | chr8.2:25864751-25864770 | MS.gene56770:CDS | 10.0% |
| !! | AAAAACTATTACCTTAAATT+TGG | + | chr8.2:25864704-25864723 | None:intergenic | 15.0% |
| !! | AAATTAAATCAAAGTCAAAA+TGG | - | chr8.2:25863992-25864011 | MS.gene56770:CDS | 15.0% |
| !! | AATACAACAAATTAAAAGTA+TGG | + | chr8.2:25864879-25864898 | None:intergenic | 15.0% |
| !! | ACATGTAAAAAAATGTAAAA+TGG | + | chr8.2:25863798-25863817 | None:intergenic | 15.0% |
| !! | AGAATTTAACATTCAATTAA+TGG | + | chr8.2:25863968-25863987 | None:intergenic | 15.0% |
| !! | GAATTTAACATTCAATTAAT+GGG | + | chr8.2:25863967-25863986 | None:intergenic | 15.0% |
| !! | TAAAAAAATGTAAAATGGAT+GGG | + | chr8.2:25863793-25863812 | None:intergenic | 15.0% |
| !! | TTAGTTATATTCAAATTTAG+AGG | + | chr8.2:25864375-25864394 | None:intergenic | 15.0% |
| !!! | ATTTTTATTGATAATGTTTC+TGG | - | chr8.2:25863360-25863379 | MS.gene56770:CDS | 15.0% |
| !!! | TACTTACTTTAAAAATAAGT+TGG | + | chr8.2:25864122-25864141 | None:intergenic | 15.0% |
| !!! | TTCTAATATTGAAAACATTT+TGG | - | chr8.2:25863831-25863850 | MS.gene56770:intron | 15.0% |
| !! | AAAAAAATGTAAAATGGATG+GGG | + | chr8.2:25863792-25863811 | None:intergenic | 20.0% |
| !! | AGATAGAAAACAACATTTAA+AGG | + | chr8.2:25863225-25863244 | None:intergenic | 20.0% |
| !! | ATAAAGAAAAATGTGTTTGA+TGG | - | chr8.2:25863324-25863343 | MS.gene56770:CDS | 20.0% |
| !! | GTAAAAAAATGTAAAATGGA+TGG | + | chr8.2:25863794-25863813 | None:intergenic | 20.0% |
| !! | TAAAGAAAAATGTGTTTGAT+GGG | - | chr8.2:25863325-25863344 | MS.gene56770:CDS | 20.0% |
| !! | TTACACTTTGTAAAAAAATG+AGG | + | chr8.2:25863263-25863282 | None:intergenic | 20.0% |
| !! | TTAGGTTTATATAATAAGAG+CGG | - | chr8.2:25864796-25864815 | MS.gene56770:intron | 20.0% |
| !!! | AAAACAAGTAAGATTTTGAA+GGG | - | chr8.2:25863517-25863536 | MS.gene56770:CDS | 20.0% |
| !!! | ATGTTGAATTTTTAAGAGTT+CGG | - | chr8.2:25865485-25865504 | MS.gene56770:intron | 20.0% |
| !!! | CAATCATTTTCTTTTTCTTT+TGG | + | chr8.2:25865075-25865094 | None:intergenic | 20.0% |
| !!! | TTACTCATATCTTTTTTCTT+AGG | - | chr8.2:25864778-25864797 | MS.gene56770:intron | 20.0% |
| !!! | TTGTGATTTCTTTTTGTATA+GGG | - | chr8.2:25864484-25864503 | MS.gene56770:CDS | 20.0% |
| !!! | TTTTACATGTATTGAAACAT+TGG | - | chr8.2:25863808-25863827 | MS.gene56770:intron | 20.0% |
| ! | AAAAAATGTAAAATGGATGG+GGG | + | chr8.2:25863791-25863810 | None:intergenic | 25.0% |
| ! | AACCAAACAATTAGATGAAA+GGG | + | chr8.2:25863886-25863905 | None:intergenic | 25.0% |
| ! | AACTATTACCTTAAATTTGG+TGG | + | chr8.2:25864701-25864720 | None:intergenic | 25.0% |
| ! | AATTTCAGAATCATAGTTGA+TGG | - | chr8.2:25865220-25865239 | MS.gene56770:intron | 25.0% |
| ! | ACTATTACCTTAAATTTGGT+GGG | + | chr8.2:25864700-25864719 | None:intergenic | 25.0% |
| ! | ATCACATTAGAAGATGAATA+TGG | - | chr8.2:25864556-25864575 | MS.gene56770:CDS | 25.0% |
| ! | CATAGAAGGTTAAAATTATG+TGG | + | chr8.2:25863858-25863877 | None:intergenic | 25.0% |
| ! | GAAAATGATTGTATCAAACA+TGG | - | chr8.2:25865084-25865103 | MS.gene56770:intron | 25.0% |
| ! | TAAAAGACATTTACCTGATA+AGG | - | chr8.2:25864525-25864544 | MS.gene56770:CDS | 25.0% |
| ! | TAAAATGAAGCAACTGTATT+AGG | - | chr8.2:25864431-25864450 | MS.gene56770:intron | 25.0% |
| ! | TTAAATCTCAATAGGTTACT+CGG | - | chr8.2:25863614-25863633 | MS.gene56770:CDS | 25.0% |
| !! | CAAAACAAGTAAGATTTTGA+AGG | - | chr8.2:25863516-25863535 | MS.gene56770:CDS | 25.0% |
| !! | CTTGTGATTTCTTTTTGTAT+AGG | - | chr8.2:25864483-25864502 | MS.gene56770:CDS | 25.0% |
| !! | TGTGATTTCTTTTTGTATAG+GGG | - | chr8.2:25864485-25864504 | MS.gene56770:CDS | 25.0% |
| !!! | CAAAATCTTACTTGTTTTGT+TGG | + | chr8.2:25863515-25863534 | None:intergenic | 25.0% |
| !!! | GTTTAACGCTTTTTCTTTTT+GGG | + | chr8.2:25865036-25865055 | None:intergenic | 25.0% |
| AAATACATTGCATGTAAGAC+AGG | - | chr8.2:25864595-25864614 | MS.gene56770:CDS | 30.0% | |
| AATGGTGAAAAAAGATGTGA+TGG | - | chr8.2:25863104-25863123 | MS.gene56770:CDS | 30.0% | |
| AATTGAACCCACCAAATTTA+AGG | - | chr8.2:25864690-25864709 | MS.gene56770:intron | 30.0% | |
| ACAACATTTAAAGGAGACTT+TGG | + | chr8.2:25863216-25863235 | None:intergenic | 30.0% | |
| AGAAAGAAGTTGCTACTAAT+TGG | - | chr8.2:25865719-25865738 | MS.gene56770:CDS | 30.0% | |
| AGAGGATGAAATAAAGAACA+TGG | - | chr8.2:25865600-25865619 | MS.gene56770:intron | 30.0% | |
| CAACCAAACAATTAGATGAA+AGG | + | chr8.2:25863887-25863906 | None:intergenic | 30.0% | |
| CAATTAGAAAATTCAACACG+CGG | + | chr8.2:25865427-25865446 | None:intergenic | 30.0% | |
| CATATATCTTCTAATCTCTG+AGG | + | chr8.2:25865551-25865570 | None:intergenic | 30.0% | |
| CCTGAATTTAAAGAGTTGAA+AGG | - | chr8.2:25865190-25865209 | MS.gene56770:intron | 30.0% | |
| CCTTTCAACTCTTTAAATTC+AGG | + | chr8.2:25865193-25865212 | None:intergenic | 30.0% | |
| CTCAGAGATTAGAAGATATA+TGG | - | chr8.2:25865549-25865568 | MS.gene56770:intron | 30.0% | |
| GATTGCTCTGTATATTGTTT+AGG | + | chr8.2:25865118-25865137 | None:intergenic | 30.0% | |
| TACTAAACAATGTATCACAG+AGG | - | chr8.2:25863675-25863694 | MS.gene56770:CDS | 30.0% | |
| TCAATCCAGATTGTGAATAA+CGG | - | chr8.2:25863583-25863602 | MS.gene56770:CDS | 30.0% | |
| TGTCTATCATGAAATCATCA+AGG | - | chr8.2:25864901-25864920 | MS.gene56770:intron | 30.0% | |
| TTGATTGCAGTTCAACTAAA+GGG | - | chr8.2:25864172-25864191 | MS.gene56770:CDS | 30.0% | |
| TTTGATTGCAGTTCAACTAA+AGG | - | chr8.2:25864171-25864190 | MS.gene56770:CDS | 30.0% | |
| TTTGCAGTATAAACAGAACA+AGG | - | chr8.2:25863457-25863476 | MS.gene56770:CDS | 30.0% | |
| ! | ACTGTGTTGTTCATTTCTAT+AGG | + | chr8.2:25865575-25865594 | None:intergenic | 30.0% |
| ! | AGGCTTGTTTAAATCTCAAT+AGG | - | chr8.2:25863606-25863625 | MS.gene56770:CDS | 30.0% |
| ! | CTAACATATGCATTTTCTAC+AGG | - | chr8.2:25864024-25864043 | MS.gene56770:intron | 30.0% |
| ! | GCGTGTTGAATTTTCTAATT+GGG | - | chr8.2:25865426-25865445 | MS.gene56770:intron | 30.0% |
| ! | TTTTTCTTTTGGATGTCTTG+TGG | + | chr8.2:25865064-25865083 | None:intergenic | 30.0% |
| !!! | ATTGCTAGCTTTTGAACATT+TGG | - | chr8.2:25865456-25865475 | MS.gene56770:intron | 30.0% |
| !!! | GGTTTAACGCTTTTTCTTTT+TGG | + | chr8.2:25865037-25865056 | None:intergenic | 30.0% |
| !!! | TTGCTAGCTTTTGAACATTT+GGG | - | chr8.2:25865457-25865476 | MS.gene56770:intron | 30.0% |
| AACGAAGCTTGAAGAATTGA+AGG | - | chr8.2:25865624-25865643 | MS.gene56770:intron | 35.0% | |
| AGTTGCACCAAACAAAAAGT+GGG | - | chr8.2:25864836-25864855 | MS.gene56770:intron | 35.0% | |
| ATCACAAAAGTTTGCAAGGT+TGG | - | chr8.2:25864066-25864085 | MS.gene56770:intron | 35.0% | |
| CAAAAAGAAGCCAAACCTAT+AGG | + | chr8.2:25863395-25863414 | None:intergenic | 35.0% | |
| CAAGACATGACGATGTTATT+TGG | + | chr8.2:25864467-25864486 | None:intergenic | 35.0% | |
| CACAATCACAAAAGTTTGCA+AGG | - | chr8.2:25864062-25864081 | MS.gene56770:intron | 35.0% | |
| CACCCTTTCATCTAATTGTT+TGG | - | chr8.2:25863881-25863900 | MS.gene56770:intron | 35.0% | |
| CTATTACATGCTACAACATC+AGG | + | chr8.2:25865013-25865032 | None:intergenic | 35.0% | |
| CTTCATGACAATCTCATGAA+AGG | - | chr8.2:25865319-25865338 | MS.gene56770:CDS | 35.0% | |
| GCTTTGTCAGAAATATTCGA+GGG | - | chr8.2:25865157-25865176 | MS.gene56770:intron | 35.0% | |
| GTGATAGTTGTATCCTTATC+AGG | + | chr8.2:25864541-25864560 | None:intergenic | 35.0% | |
| GTTAGCATAGCTTATGAAAC+TGG | - | chr8.2:25865520-25865539 | MS.gene56770:intron | 35.0% | |
| GTTTCTTCCTGAAAACATGA+AGG | + | chr8.2:25864981-25865000 | None:intergenic | 35.0% | |
| TAAATTGCTAGAAGGTGATG+TGG | - | chr8.2:25864654-25864673 | MS.gene56770:intron | 35.0% | |
| TGATTGCAGTTCAACTAAAG+GGG | - | chr8.2:25864173-25864192 | MS.gene56770:CDS | 35.0% | |
| TTCACAAAACTAGGGAATTC+TGG | + | chr8.2:25864279-25864298 | None:intergenic | 35.0% | |
| TTGCATTATAAGCTGATTGC+TGG | - | chr8.2:25865343-25865362 | MS.gene56770:intron | 35.0% | |
| TTGTGATTGTGTCTCATCTT+GGG | + | chr8.2:25864053-25864072 | None:intergenic | 35.0% | |
| TTTCCACGAAATGATGATCA+TGG | - | chr8.2:25863129-25863148 | MS.gene56770:CDS | 35.0% | |
| TTTGGAGAGAAATGTGTCAT+AGG | + | chr8.2:25863198-25863217 | None:intergenic | 35.0% | |
| TTTGTGATTGTGTCTCATCT+TGG | + | chr8.2:25864054-25864073 | None:intergenic | 35.0% | |
| ! | AGCTTTGTCAGAAATATTCG+AGG | - | chr8.2:25865156-25865175 | MS.gene56770:intron | 35.0% |
| ! | CGCGTGTTGAATTTTCTAAT+TGG | - | chr8.2:25865425-25865444 | MS.gene56770:intron | 35.0% |
| ! | CTTTTCTCCTTCATGTTTTC+AGG | - | chr8.2:25864971-25864990 | MS.gene56770:intron | 35.0% |
| ! | GAGTGACTGTTGCATTTTAT+GGG | - | chr8.2:25863151-25863170 | MS.gene56770:CDS | 35.0% |
| ! | GCTTTAGATTCCTATAGGTT+TGG | - | chr8.2:25863382-25863401 | MS.gene56770:CDS | 35.0% |
| ! | TAAGCTTGTAAAGCACTACA+AGG | + | chr8.2:25863942-25863961 | None:intergenic | 35.0% |
| ! | TGTCTTTTACAAAACGACAC+AGG | + | chr8.2:25864514-25864533 | None:intergenic | 35.0% |
| !! | ATGAAAGGGTGTTTCATAGA+AGG | + | chr8.2:25863872-25863891 | None:intergenic | 35.0% |
| !! | ATTTGGTGGGTTCAATTAGT+TGG | + | chr8.2:25864687-25864706 | None:intergenic | 35.0% |
| !! | CACATGTAGCTAGTTGTTTT+TGG | - | chr8.2:25864313-25864332 | MS.gene56770:intron | 35.0% |
| !! | CTATAGGTTTGGCTTCTTTT+TGG | - | chr8.2:25863393-25863412 | MS.gene56770:CDS | 35.0% |
| !! | TCAGAATCATAGTTGATGGA+AGG | - | chr8.2:25865224-25865243 | MS.gene56770:intron | 35.0% |
| !! | TTCTGGCTTTAGATTCCTAT+AGG | - | chr8.2:25863377-25863396 | MS.gene56770:CDS | 35.0% |
| !!! | TGTAGCTAGTTGTTTTTGGA+TGG | - | chr8.2:25864317-25864336 | MS.gene56770:intron | 35.0% |
| AAATGTAAAATGGATGGGGG+TGG | + | chr8.2:25863788-25863807 | None:intergenic | 40.0% | |
| AATGTAAAATGGATGGGGGT+GGG | + | chr8.2:25863787-25863806 | None:intergenic | 40.0% | |
| ACAGATGGAACATATTCTCG+TGG | - | chr8.2:25864198-25864217 | MS.gene56770:CDS | 40.0% | |
| ACTCCATGATCATCATTTCG+TGG | + | chr8.2:25863135-25863154 | None:intergenic | 40.0% | |
| AGCAAGGACTTCACAAAACT+AGG | + | chr8.2:25864288-25864307 | None:intergenic | 40.0% | |
| ATCCAGATTGTGAATAACGG+AGG | - | chr8.2:25863586-25863605 | MS.gene56770:CDS | 40.0% | |
| CAAATGTGATCGAAGTCCTT+CGG | + | chr8.2:25864253-25864272 | None:intergenic | 40.0% | |
| GAATTGAAGGAAGCTTGTAG+CGG | - | chr8.2:25865637-25865656 | MS.gene56770:CDS | 40.0% | |
| GAGTTGCACCAAACAAAAAG+TGG | - | chr8.2:25864835-25864854 | MS.gene56770:intron | 40.0% | |
| GCAAGGACTTCACAAAACTA+GGG | + | chr8.2:25864287-25864306 | None:intergenic | 40.0% | |
| GCAGTATAAACAGAACAAGG+CGG | - | chr8.2:25863460-25863479 | MS.gene56770:CDS | 40.0% | |
| GCTGTGCATAAATTGCTAGA+AGG | - | chr8.2:25864646-25864665 | MS.gene56770:intron | 40.0% | |
| GTAGAGAGTTCTTCTTCGAT+TGG | + | chr8.2:25865250-25865269 | None:intergenic | 40.0% | |
| TAGTCGATAGTTGACAACAC+TGG | - | chr8.2:25863746-25863765 | MS.gene56770:CDS | 40.0% | |
| TCAACTAAAGGGGTAACAGA+TGG | - | chr8.2:25864183-25864202 | MS.gene56770:CDS | 40.0% | |
| TGAAAAGAAGAGGGATCGAA+TGG | - | chr8.2:25863086-25863105 | MS.gene56770:CDS | 40.0% | |
| ! | GGAGTGACTGTTGCATTTTA+TGG | - | chr8.2:25863150-25863169 | MS.gene56770:CDS | 40.0% |
| ! | TGTTGCATTTTATGGGAGAG+AGG | - | chr8.2:25863158-25863177 | MS.gene56770:CDS | 40.0% |
| ! | TTTTGGATGTCTTGTGGAAC+AGG | + | chr8.2:25865058-25865077 | None:intergenic | 40.0% |
| AGCCTCCGTTATTCACAATC+TGG | + | chr8.2:25863591-25863610 | None:intergenic | 45.0% | |
| AGCTACATGTGATCTGAGCA+AGG | + | chr8.2:25864304-25864323 | None:intergenic | 45.0% | |
| ATTGCTAGAAGGTGATGTGG+TGG | - | chr8.2:25864657-25864676 | MS.gene56770:intron | 45.0% | |
| CGAAGGACTTCGATCACATT+TGG | - | chr8.2:25864251-25864270 | MS.gene56770:CDS | 45.0% | |
| GTATAAACAGAACAAGGCGG+TGG | - | chr8.2:25863463-25863482 | MS.gene56770:CDS | 45.0% | |
| TGAACAACACAGTCGAGTAG+AGG | - | chr8.2:25865582-25865601 | MS.gene56770:intron | 45.0% | |
| TGCACCAAACAAAAAGTGGG+AGG | - | chr8.2:25864839-25864858 | MS.gene56770:intron | 45.0% | |
| TGTAAGACAGGATTGAGTGC+TGG | - | chr8.2:25864607-25864626 | MS.gene56770:CDS | 45.0% | |
| ! | GCTTGTAAAGCACTACAAGG+TGG | + | chr8.2:25863939-25863958 | None:intergenic | 45.0% |
| ! | TATGGGAGAGAGGTGTATGA+GGG | - | chr8.2:25863168-25863187 | MS.gene56770:CDS | 45.0% |
| ! | TTATGGGAGAGAGGTGTATG+AGG | - | chr8.2:25863167-25863186 | MS.gene56770:CDS | 45.0% |
| !! | GGCGGTTGATGAAAAGAAGA+GGG | - | chr8.2:25863077-25863096 | MS.gene56770:CDS | 45.0% |
| !! | TGGCGGTTGATGAAAAGAAG+AGG | - | chr8.2:25863076-25863095 | MS.gene56770:CDS | 45.0% |
| !! | TTTTAAGAGTTCGGTTGCGC+AGG | - | chr8.2:25865494-25865513 | MS.gene56770:intron | 45.0% |
| !!! | CTTGCCTCCCACTTTTTGTT+TGG | + | chr8.2:25864846-25864865 | None:intergenic | 45.0% |
| TGGAACATATTCTCGTGGCG+AGG | - | chr8.2:25864203-25864222 | MS.gene56770:CDS | 50.0% | |
| !! | AGACAGGATTGAGTGCTGGT+TGG | - | chr8.2:25864611-25864630 | MS.gene56770:CDS | 50.0% |
| TCTGCTGTGATTCACGCCGA+AGG | - | chr8.2:25864234-25864253 | MS.gene56770:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 25863072 | 25865744 | 25863072 | ID=MS.gene56770 |
| chr8.2 | mRNA | 25863072 | 25865744 | 25863072 | ID=MS.gene56770.t1;Parent=MS.gene56770 |
| chr8.2 | exon | 25865637 | 25865744 | 25865637 | ID=MS.gene56770.t1.exon1;Parent=MS.gene56770.t1 |
| chr8.2 | CDS | 25865637 | 25865744 | 25865637 | ID=cds.MS.gene56770.t1;Parent=MS.gene56770.t1 |
| chr8.2 | exon | 25865293 | 25865352 | 25865293 | ID=MS.gene56770.t1.exon2;Parent=MS.gene56770.t1 |
| chr8.2 | CDS | 25865293 | 25865352 | 25865293 | ID=cds.MS.gene56770.t1;Parent=MS.gene56770.t1 |
| chr8.2 | exon | 25864733 | 25864770 | 25864733 | ID=MS.gene56770.t1.exon3;Parent=MS.gene56770.t1 |
| chr8.2 | CDS | 25864733 | 25864770 | 25864733 | ID=cds.MS.gene56770.t1;Parent=MS.gene56770.t1 |
| chr8.2 | exon | 25864478 | 25864634 | 25864478 | ID=MS.gene56770.t1.exon4;Parent=MS.gene56770.t1 |
| chr8.2 | CDS | 25864478 | 25864634 | 25864478 | ID=cds.MS.gene56770.t1;Parent=MS.gene56770.t1 |
| chr8.2 | exon | 25864105 | 25864311 | 25864105 | ID=MS.gene56770.t1.exon5;Parent=MS.gene56770.t1 |
| chr8.2 | CDS | 25864105 | 25864311 | 25864105 | ID=cds.MS.gene56770.t1;Parent=MS.gene56770.t1 |
| chr8.2 | exon | 25863956 | 25864016 | 25863956 | ID=MS.gene56770.t1.exon6;Parent=MS.gene56770.t1 |
| chr8.2 | CDS | 25863956 | 25864016 | 25863956 | ID=cds.MS.gene56770.t1;Parent=MS.gene56770.t1 |
| chr8.2 | exon | 25863072 | 25863823 | 25863072 | ID=MS.gene56770.t1.exon7;Parent=MS.gene56770.t1 |
| chr8.2 | CDS | 25863072 | 25863823 | 25863072 | ID=cds.MS.gene56770.t1;Parent=MS.gene56770.t1 |
| Gene Sequence |
| Protein sequence |
