AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56888

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56888.t1 MTR_4g107230 92.150 293 13 4 1 289 1 287 1.70e-175 486
MS.gene56888.t1 MTR_5g037080 56.757 185 47 6 6 175 19 185 4.93e-48 162
MS.gene56888.t1 MTR_4g100630 57.746 142 52 4 18 155 25 162 1.11e-46 159
MS.gene56888.t1 MTR_2g100930 45.161 186 90 4 3 176 15 200 6.85e-43 150
MS.gene56888.t1 MTR_0036s0260 91.176 68 6 0 88 155 28 95 3.72e-38 134
MS.gene56888.t1 MTR_6g092540 51.020 147 56 4 13 152 24 161 1.50e-37 134
MS.gene56888.t1 MTR_2g090305 88.235 68 8 0 88 155 28 95 6.65e-36 127
MS.gene56888.t1 MTR_3g462790 63.830 94 30 1 76 165 135 228 1.11e-35 130
MS.gene56888.t1 MTR_8g101650 73.239 71 18 1 82 152 99 168 5.48e-34 125
MS.gene56888.t1 MTR_4g111975 71.622 74 21 0 81 154 131 204 6.91e-34 125
MS.gene56888.t1 MTR_1g111830 55.856 111 44 3 73 181 112 219 3.31e-33 122
MS.gene56888.t1 MTR_5g069710 68.831 77 24 0 78 154 122 198 2.38e-32 121
MS.gene56888.t1 MTR_7g067080 50.862 116 54 2 76 188 128 243 1.05e-31 120
MS.gene56888.t1 MTR_5g081860 63.855 83 28 1 78 158 115 197 3.65e-30 115
MS.gene56888.t1 MTR_3g104370 53.333 90 39 1 69 155 72 161 5.51e-27 105
MS.gene56888.t1 MTR_8g063600 60.811 74 27 1 82 153 100 173 5.50e-25 101
MS.gene56888.t1 MTR_5g027570 31.737 167 82 4 42 177 21 186 4.76e-24 97.8
MS.gene56888.t1 MTR_5g027550 45.631 103 49 3 70 166 60 161 8.12e-22 91.7
MS.gene56888.t1 MTR_5g088010 44.944 89 43 2 82 164 54 142 1.57e-20 88.6
MS.gene56888.t1 MTR_8g063870 44.545 110 51 3 90 189 94 203 5.73e-20 87.4
MS.gene56888.t1 MTR_4g015130 64.286 56 20 0 98 153 3 58 1.29e-19 81.6
MS.gene56888.t1 MTR_1g048660 56.250 64 28 0 89 152 13 76 2.23e-19 81.3
MS.gene56888.t1 MTR_1g033620 46.875 96 46 1 104 194 21 116 4.71e-19 84.3
MS.gene56888.t1 MTR_5g088060 48.148 81 36 2 90 164 274 354 8.02e-19 86.3
MS.gene56888.t1 MTR_5g488160 48.148 81 36 2 90 164 274 354 8.02e-19 86.3
MS.gene56888.t1 MTR_1g083180 51.429 70 30 2 90 156 63 131 4.75e-15 72.4
MS.gene56888.t1 MTR_5g075760 34.746 118 65 4 59 173 78 186 2.39e-14 70.9
MS.gene56888.t1 MTR_3g070110 48.611 72 30 1 90 154 97 168 3.73e-13 67.8
MS.gene56888.t1 MTR_5g075790 40.230 87 42 3 90 173 115 194 6.03e-13 67.0
MS.gene56888.t1 MTR_6g043490 35.802 81 45 2 88 161 107 187 3.70e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56888.t1 AT1G74840 56.828 227 79 8 8 229 16 228 1.64e-59 191
MS.gene56888.t1 AT1G74840 63.874 191 61 6 8 194 16 202 3.07e-59 189
MS.gene56888.t1 AT1G19000 45.130 308 124 11 1 289 4 285 3.26e-54 177
MS.gene56888.t1 AT1G19000 45.130 308 124 11 1 289 4 285 3.26e-54 177
MS.gene56888.t1 AT5G47390 54.658 161 63 3 18 173 25 180 5.20e-52 174
MS.gene56888.t1 AT1G70000 61.988 171 43 6 5 168 23 178 2.89e-49 164
MS.gene56888.t1 AT1G70000 61.988 171 43 6 5 168 23 178 2.89e-49 164
MS.gene56888.t1 AT3G16350 44.860 214 82 8 18 207 49 250 2.66e-40 144
MS.gene56888.t1 AT5G58900 52.174 115 49 1 76 190 129 237 6.23e-35 128
MS.gene56888.t1 AT1G49010 72.973 74 20 0 81 154 127 200 4.57e-34 126
MS.gene56888.t1 AT5G61620 41.209 182 88 6 4 177 22 192 1.27e-33 125
MS.gene56888.t1 AT5G04760 65.882 85 28 1 78 161 89 173 1.31e-33 122
MS.gene56888.t1 AT2G38090 57.732 97 41 0 65 161 118 214 4.43e-33 123
MS.gene56888.t1 AT5G08520 70.270 74 22 0 81 154 111 184 9.93e-33 122
MS.gene56888.t1 AT5G56840 58.065 93 31 2 63 154 73 158 1.53e-31 117
MS.gene56888.t1 AT5G01200 64.865 74 26 0 81 154 139 212 3.05e-29 112
MS.gene56888.t1 AT5G05790 60.000 80 32 0 75 154 118 197 1.29e-28 110
MS.gene56888.t1 AT5G05790 60.000 80 32 0 75 154 118 197 1.29e-28 110
MS.gene56888.t1 AT3G11280 60.000 80 32 0 75 154 114 193 1.57e-28 110
MS.gene56888.t1 AT3G11280 60.000 80 32 0 75 154 114 193 1.57e-28 110
MS.gene56888.t1 AT4G09450 51.163 86 42 0 76 161 79 164 1.64e-23 95.5
MS.gene56888.t1 AT3G10580 60.000 70 26 1 84 153 91 158 5.34e-23 95.5
MS.gene56888.t1 AT3G10580 60.000 70 26 1 84 153 91 158 7.79e-23 95.9
MS.gene56888.t1 AT5G23650 58.333 72 30 0 82 153 114 185 2.51e-22 95.1
MS.gene56888.t1 AT3G10590 46.512 86 45 1 76 161 99 183 6.81e-19 83.2

Find 65 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCATATACTGACATAAA+AGG 0.288173 8.1:+17873727 None:intergenic
ATCAGACACAATGGAAGCTT+TGG 0.326101 8.1:+17873591 None:intergenic
TTGACCTGTTCTTCCTCCAT+TGG 0.357105 8.1:+17873811 None:intergenic
TCCGGCGAATTCATGCTCTT+TGG 0.363159 8.1:-17874901 MS.gene56888:CDS
GATTGAATAGATTGTTGGTT+TGG 0.370712 8.1:+17873638 None:intergenic
TCTGAAACAACAAAAGGAAT+TGG 0.370883 8.1:+17873616 None:intergenic
TGATGATGTCTTCCTTTGAT+TGG 0.372017 8.1:+17873504 None:intergenic
TCGAACCTCGTTTACGTTCG+CGG 0.379501 8.1:+17874695 None:intergenic
ATCATCGGCGGAGGCGTAAC+CGG 0.389243 8.1:+17874750 None:intergenic
GAGCACAAGCTGTTCTTAGT+TGG 0.406864 8.1:-17874573 MS.gene56888:CDS
CTCGTTTACGTTCGCGGTCG+CGG 0.408987 8.1:+17874701 None:intergenic
TTTATGTCAGTATATGAGTT+GGG 0.422541 8.1:-17873724 MS.gene56888:CDS
TTAGTTGGATTGCAGAAAGT+TGG 0.427311 8.1:-17874558 MS.gene56888:CDS
AATTGGATTGAATAGATTGT+TGG 0.429941 8.1:+17873633 None:intergenic
TTCGCGGTCGCGGTTTCTGC+CGG 0.437464 8.1:+17874711 None:intergenic
AATTCCAATGGAGGAAGAAC+AGG 0.463202 8.1:-17873815 MS.gene56888:CDS
TCAGACACAATGGAAGCTTT+GGG 0.470464 8.1:+17873592 None:intergenic
AGAAAGTTGGAAAAGGTGAT+TGG 0.477943 8.1:-17874545 MS.gene56888:CDS
GACACTCCAACACTTTCCCT+CGG 0.478622 8.1:-17873541 MS.gene56888:CDS
TGGAGTGTCAATGGATGAAC+TGG 0.479134 8.1:+17873555 None:intergenic
ACCGCTGACTCCGCCATCTC+CGG 0.479192 8.1:-17874919 MS.gene56888:CDS
GAGCATGAATTCGCCGGAGA+TGG 0.483629 8.1:+17874906 None:intergenic
CCAATGGAAGAACTCACTCT+TGG 0.488703 8.1:-17873685 MS.gene56888:CDS
CCAAGAGTGAGTTCTTCCAT+TGG 0.515535 8.1:+17873685 None:intergenic
AGTGGTGATATCAAAGAGAC+TGG 0.518743 8.1:+17874413 None:intergenic
GGAAAGTGTTGGAGTGTCAA+TGG 0.520689 8.1:+17873546 None:intergenic
TTGGGATCTGAAACAACAAA+AGG 0.525424 8.1:+17873610 None:intergenic
TGGATCAGGGATTCCGTGGA+CGG 0.525462 8.1:-17874601 MS.gene56888:intron
ATGATGTTGTTGTTGTCTTG+AGG 0.532951 8.1:+17874808 None:intergenic
ACACTCCAACACTTTCCCTC+GGG 0.541383 8.1:-17873540 MS.gene56888:CDS
TTGTGCTCTTCCTCCGTCCA+CGG 0.546086 8.1:+17874588 None:intergenic
AGGAACGGCATCATCGGCGG+AGG 0.549057 8.1:+17874741 None:intergenic
GGATTGCAGAAAGTTGGAAA+AGG 0.553347 8.1:-17874552 MS.gene56888:CDS
CTTCCTTTGATTGGACGAGA+AGG 0.554014 8.1:+17873513 None:intergenic
TATCCTTCTCGTCCAATCAA+AGG 0.570749 8.1:-17873516 MS.gene56888:CDS
TCCAAAGAGCATGAATTCGC+CGG 0.571300 8.1:+17874900 None:intergenic
GATTGAGATTACTTCGGCGG+AGG 0.576902 8.1:+17874451 None:intergenic
TCAGGTGACTGCAATTCCAA+TGG 0.585816 8.1:-17873827 MS.gene56888:intron
GCCGGAGATGGCGGAGTCAG+CGG 0.586317 8.1:+17874918 None:intergenic
CATGAATTCGCCGGAGATGG+CGG 0.588548 8.1:+17874909 None:intergenic
TATCAAAGAGACTGGATCTA+CGG 0.592657 8.1:+17874421 None:intergenic
AGACAACAACAACATCATCA+AGG 0.604820 8.1:-17874803 MS.gene56888:CDS
CGGAAAAGTTACCGTGTCAG+TGG 0.608419 8.1:+17874395 None:intergenic
CTTTGATATCACCACTGACA+CGG 0.611879 8.1:-17874406 MS.gene56888:intron
AACAAAGACGTTATCACCGC+CGG 0.612643 8.1:-17874769 MS.gene56888:CDS
GTGATTGGAGAGGAATCTCA+AGG 0.619264 8.1:-17874530 MS.gene56888:CDS
TTGAGGAACGGCATCATCGG+CGG 0.620801 8.1:+17874738 None:intergenic
TGTTAACGAGAGTACTCCAA+TGG 0.622989 8.1:-17873701 MS.gene56888:CDS
GAAGAACTCACTCTTGGACA+AGG 0.624406 8.1:-17873679 MS.gene56888:CDS
CGCGACCGCGAACGTAAACG+AGG 0.635630 8.1:-17874700 MS.gene56888:intron
GGAGATGGCGGAGTCAGCGG+TGG 0.635690 8.1:+17874921 None:intergenic
GTTGGAAAAGGTGATTGGAG+AGG 0.636411 8.1:-17874540 MS.gene56888:CDS
GGCGATTGAGATTACTTCGG+CGG 0.637423 8.1:+17874448 None:intergenic
GACGGCGATTGAGATTACTT+CGG 0.641222 8.1:+17874445 None:intergenic
ATCGGCGGAGGCGTAACCGG+CGG 0.643871 8.1:+17874753 None:intergenic
GATAGCCCGAGGGAAAGTGT+TGG 0.647410 8.1:+17873535 None:intergenic
GATGCCGTTCCTCAAAACTC+CGG 0.647933 8.1:-17874730 MS.gene56888:CDS
GGTGACTGCAATTCCAATGG+AGG 0.650002 8.1:-17873824 MS.gene56888:CDS
TGGACGAGAAGGATAGCCCG+AGG 0.651466 8.1:+17873524 None:intergenic
AGAGGTGATATCAGACACAA+TGG 0.652354 8.1:+17873582 None:intergenic
ATCAGGGATTCCGTGGACGG+AGG 0.665588 8.1:-17874598 MS.gene56888:intron
AATGGATGAACTGGAACTAG+AGG 0.682505 8.1:+17873564 None:intergenic
AGAGACTGGATCTACGGCGA+CGG 0.684123 8.1:+17874427 None:intergenic
GCATGACTTGCAACCTGCGT+AGG 0.689624 8.1:+17874486 None:intergenic
GGACGAGAAGGATAGCCCGA+GGG 0.702926 8.1:+17873525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTCTGTTATTTAT+TGG - chr8.1:17874110-17874129 MS.gene56888:intron 10.0%
!! AACTAATTGAATACAAATTT+AGG + chr8.1:17874049-17874068 None:intergenic 15.0%
!! AGAGAAATAATATATATGTT+AGG - chr8.1:17874402-17874421 MS.gene56888:intron 15.0%
!! AAGAGTGATATAAGATTATA+AGG - chr8.1:17874305-17874324 MS.gene56888:intron 20.0%
!! AAGGAAACACAAAAATATAA+TGG - chr8.1:17874208-17874227 MS.gene56888:intron 20.0%
!! TCAAAGAAAGTTAATGTATT+CGG + chr8.1:17874469-17874488 None:intergenic 20.0%
!!! ATTATTATTTTTGCCATGTT+AGG - chr8.1:17874169-17874188 MS.gene56888:intron 20.0%
!!! CTTTTGCTTTTTTTTTTTTG+TGG - chr8.1:17874239-17874258 MS.gene56888:intron 20.0%
!!! GTGATTATTGTTATTGATTT+TGG - chr8.1:17873760-17873779 MS.gene56888:CDS 20.0%
! AACTCATATACTGACATAAA+AGG + chr8.1:17874657-17874676 None:intergenic 25.0%
! AATTGGATTGAATAGATTGT+TGG + chr8.1:17874751-17874770 None:intergenic 25.0%
! ACAAGATATATATCAACTCT+TGG + chr8.1:17874357-17874376 None:intergenic 25.0%
! TAATCAATAGAGTAGTGTTA+TGG - chr8.1:17874071-17874090 MS.gene56888:intron 25.0%
! TGAATACAAATTTAGGCAAA+AGG + chr8.1:17874042-17874061 None:intergenic 25.0%
! TTTATGTCAGTATATGAGTT+GGG - chr8.1:17874657-17874676 MS.gene56888:intron 25.0%
!! TTTTATGTCAGTATATGAGT+TGG - chr8.1:17874656-17874675 MS.gene56888:intron 25.0%
!!! ATTGTTATTGATTTTGGATC+AGG - chr8.1:17873766-17873785 MS.gene56888:CDS 25.0%
!!! TTATCTCCATTTTTGAAACA+TGG + chr8.1:17874921-17874940 None:intergenic 25.0%
!!! TTGTTATTGATTTTGGATCA+GGG - chr8.1:17873767-17873786 MS.gene56888:CDS 25.0%
!!! TTTTTTTTGTGGAAATCCTT+TGG - chr8.1:17874250-17874269 MS.gene56888:intron 25.0%
AGGAACTTGAAAGATTGTAA+AGG - chr8.1:17874189-17874208 MS.gene56888:intron 30.0%
TGTAATAGTTGTGATGTATC+TGG - chr8.1:17874374-17874393 MS.gene56888:intron 30.0%
TGTACCAAATACATCAACTT+TGG + chr8.1:17874437-17874456 None:intergenic 30.0%
! ACAACTTTTGTGTTTATGTC+AGG - chr8.1:17874536-17874555 MS.gene56888:CDS 30.0%
! GATTGAATAGATTGTTGGTT+TGG + chr8.1:17874746-17874765 None:intergenic 30.0%
! TCTGAAACAACAAAAGGAAT+TGG + chr8.1:17874768-17874787 None:intergenic 30.0%
! TGTTTCTATAAAGAGATTGC+CGG + chr8.1:17874009-17874028 None:intergenic 30.0%
!! AATCTTTCAAGTTCCTAACA+TGG + chr8.1:17874185-17874204 None:intergenic 30.0%
!! GTAACCAAAGTTGATGTATT+TGG - chr8.1:17874430-17874449 MS.gene56888:CDS 30.0%
!!! TCCATTGATTTTTCTAGCTT+CGG + chr8.1:17874631-17874650 None:intergenic 30.0%
AGAAAGTTGGAAAAGGTGAT+TGG - chr8.1:17873836-17873855 MS.gene56888:intron 35.0%
AGACAACAACAACATCATCA+AGG - chr8.1:17873578-17873597 MS.gene56888:CDS 35.0%
GATTTCTTCACAACTACCAA+AGG + chr8.1:17874269-17874288 None:intergenic 35.0%
GCAATGCCATGTTTCAAAAA+TGG - chr8.1:17874912-17874931 MS.gene56888:CDS 35.0%
TATCAAAGAGACTGGATCTA+CGG + chr8.1:17873963-17873982 None:intergenic 35.0%
TTAGTTGGATTGCAGAAAGT+TGG - chr8.1:17873823-17873842 MS.gene56888:CDS 35.0%
! ATGATGTTGTTGTTGTCTTG+AGG + chr8.1:17873576-17873595 None:intergenic 35.0%
! TGATGATGTCTTCCTTTGAT+TGG + chr8.1:17874880-17874899 None:intergenic 35.0%
! TTGGGATCTGAAACAACAAA+AGG + chr8.1:17874774-17874793 None:intergenic 35.0%
!!! ATTGATTTTTCTAGCTTCGG+GGG + chr8.1:17874628-17874647 None:intergenic 35.0%
!!! CATTGATTTTTCTAGCTTCG+GGG + chr8.1:17874629-17874648 None:intergenic 35.0%
!!! CCATTGATTTTTCTAGCTTC+GGG + chr8.1:17874630-17874649 None:intergenic 35.0%
AAAAACAAGAACACCTACGC+AGG - chr8.1:17873882-17873901 MS.gene56888:intron 40.0%
AATGGATGAACTGGAACTAG+AGG + chr8.1:17874820-17874839 None:intergenic 40.0%
AATTCCAATGGAGGAAGAAC+AGG - chr8.1:17874566-17874585 MS.gene56888:CDS 40.0%
AGAGGTGATATCAGACACAA+TGG + chr8.1:17874802-17874821 None:intergenic 40.0%
AGTGGTGATATCAAAGAGAC+TGG + chr8.1:17873971-17873990 None:intergenic 40.0%
ATCAGACACAATGGAAGCTT+TGG + chr8.1:17874793-17874812 None:intergenic 40.0%
CCCGAAGCTAGAAAAATCAA+TGG - chr8.1:17874627-17874646 MS.gene56888:intron 40.0%
CTTTGATATCACCACTGACA+CGG - chr8.1:17873975-17873994 MS.gene56888:intron 40.0%
GGATTGCAGAAAGTTGGAAA+AGG - chr8.1:17873829-17873848 MS.gene56888:intron 40.0%
TATCCTTCTCGTCCAATCAA+AGG - chr8.1:17874865-17874884 MS.gene56888:CDS 40.0%
TCAGACACAATGGAAGCTTT+GGG + chr8.1:17874792-17874811 None:intergenic 40.0%
!! TGTTAACGAGAGTACTCCAA+TGG - chr8.1:17874680-17874699 MS.gene56888:intron 40.0%
AACAAAGACGTTATCACCGC+CGG - chr8.1:17873612-17873631 MS.gene56888:CDS 45.0%
CCAAGAGTGAGTTCTTCCAT+TGG + chr8.1:17874699-17874718 None:intergenic 45.0%
CCAATGGAAGAACTCACTCT+TGG - chr8.1:17874696-17874715 MS.gene56888:intron 45.0%
CTTCCTTTGATTGGACGAGA+AGG + chr8.1:17874871-17874890 None:intergenic 45.0%
GAAGAACTCACTCTTGGACA+AGG - chr8.1:17874702-17874721 MS.gene56888:CDS 45.0%
GACGGCGATTGAGATTACTT+CGG + chr8.1:17873939-17873958 None:intergenic 45.0%
GAGCACAAGCTGTTCTTAGT+TGG - chr8.1:17873808-17873827 MS.gene56888:CDS 45.0%
GTGATTGGAGAGGAATCTCA+AGG - chr8.1:17873851-17873870 MS.gene56888:intron 45.0%
GTTGGAAAAGGTGATTGGAG+AGG - chr8.1:17873841-17873860 MS.gene56888:intron 45.0%
TCAGGTGACTGCAATTCCAA+TGG - chr8.1:17874554-17874573 MS.gene56888:CDS 45.0%
TTGACCTGTTCTTCCTCCAT+TGG + chr8.1:17874573-17874592 None:intergenic 45.0%
! ATTTTGGATCAGGGATTCCG+TGG - chr8.1:17873776-17873795 MS.gene56888:CDS 45.0%
! CACTGACACGGTAACTTTTC+CGG - chr8.1:17873987-17874006 MS.gene56888:intron 45.0%
! TCCAAAGAGCATGAATTCGC+CGG + chr8.1:17873484-17873503 None:intergenic 45.0%
! TGGAGTGTCAATGGATGAAC+TGG + chr8.1:17874829-17874848 None:intergenic 45.0%
!! GGAAAGTGTTGGAGTGTCAA+TGG + chr8.1:17874838-17874857 None:intergenic 45.0%
!!! GTTTTGAGGAACGGCATCAT+CGG + chr8.1:17873649-17873668 None:intergenic 45.0%
ACACTCCAACACTTTCCCTC+GGG - chr8.1:17874841-17874860 MS.gene56888:CDS 50.0%
CGGAAAAGTTACCGTGTCAG+TGG + chr8.1:17873989-17874008 None:intergenic 50.0%
GACACTCCAACACTTTCCCT+CGG - chr8.1:17874840-17874859 MS.gene56888:CDS 50.0%
GATGCCGTTCCTCAAAACTC+CGG - chr8.1:17873651-17873670 MS.gene56888:CDS 50.0%
GATTGAGATTACTTCGGCGG+AGG + chr8.1:17873933-17873952 None:intergenic 50.0%
GGCGATTGAGATTACTTCGG+CGG + chr8.1:17873936-17873955 None:intergenic 50.0%
GGTGACTGCAATTCCAATGG+AGG - chr8.1:17874557-17874576 MS.gene56888:CDS 50.0%
TCCGGCGAATTCATGCTCTT+TGG - chr8.1:17873480-17873499 MS.gene56888:CDS 50.0%
TCGAACCTCGTTTACGTTCG+CGG + chr8.1:17873689-17873708 None:intergenic 50.0%
!!! TCTGCCGGAGTTTTGAGGAA+CGG + chr8.1:17873658-17873677 None:intergenic 50.0%
AGAGACTGGATCTACGGCGA+CGG + chr8.1:17873957-17873976 None:intergenic 55.0%
CATGAATTCGCCGGAGATGG+CGG + chr8.1:17873475-17873494 None:intergenic 55.0%
GAGCATGAATTCGCCGGAGA+TGG + chr8.1:17873478-17873497 None:intergenic 55.0%
TGGATCAGGGATTCCGTGGA+CGG - chr8.1:17873780-17873799 MS.gene56888:CDS 55.0%
TTGAGGAACGGCATCATCGG+CGG + chr8.1:17873646-17873665 None:intergenic 55.0%
TTGTGCTCTTCCTCCGTCCA+CGG + chr8.1:17873796-17873815 None:intergenic 55.0%
! CGGTTTCTGCCGGAGTTTTG+AGG + chr8.1:17873663-17873682 None:intergenic 55.0%
! GATAGCCCGAGGGAAAGTGT+TGG + chr8.1:17874849-17874868 None:intergenic 55.0%
! GCATGACTTGCAACCTGCGT+AGG + chr8.1:17873898-17873917 None:intergenic 55.0%
ATCAGGGATTCCGTGGACGG+AGG - chr8.1:17873783-17873802 MS.gene56888:CDS 60.0%
CTCGTTTACGTTCGCGGTCG+CGG + chr8.1:17873683-17873702 None:intergenic 60.0%
GGACGAGAAGGATAGCCCGA+GGG + chr8.1:17874859-17874878 None:intergenic 60.0%
TGGACGAGAAGGATAGCCCG+AGG + chr8.1:17874860-17874879 None:intergenic 60.0%
! ATCATCGGCGGAGGCGTAAC+CGG + chr8.1:17873634-17873653 None:intergenic 60.0%
!! TTCTAGCTTCGGGGGCTGCA+GGG + chr8.1:17874620-17874639 None:intergenic 60.0%
!! TTTCTAGCTTCGGGGGCTGC+AGG + chr8.1:17874621-17874640 None:intergenic 60.0%
AGGAACGGCATCATCGGCGG+AGG + chr8.1:17873643-17873662 None:intergenic 65.0%
CGCGACCGCGAACGTAAACG+AGG - chr8.1:17873681-17873700 MS.gene56888:CDS 65.0%
TTCGCGGTCGCGGTTTCTGC+CGG + chr8.1:17873673-17873692 None:intergenic 65.0%
!! ACCGCTGACTCCGCCATCTC+CGG - chr8.1:17873462-17873481 MS.gene56888:CDS 65.0%
! ATCGGCGGAGGCGTAACCGG+CGG + chr8.1:17873631-17873650 None:intergenic 70.0%
!! GCCGGAGATGGCGGAGTCAG+CGG + chr8.1:17873466-17873485 None:intergenic 70.0%
!! GGAGATGGCGGAGTCAGCGG+TGG + chr8.1:17873463-17873482 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 17873444 17874959 17873444 ID=MS.gene56888
chr8.1 mRNA 17873444 17874959 17873444 ID=MS.gene56888.t1;Parent=MS.gene56888
chr8.1 exon 17874701 17874959 17874701 ID=MS.gene56888.t1.exon1;Parent=MS.gene56888.t1
chr8.1 CDS 17874701 17874959 17874701 ID=cds.MS.gene56888.t1;Parent=MS.gene56888.t1
chr8.1 exon 17874407 17874615 17874407 ID=MS.gene56888.t1.exon2;Parent=MS.gene56888.t1
chr8.1 CDS 17874407 17874615 17874407 ID=cds.MS.gene56888.t1;Parent=MS.gene56888.t1
chr8.1 exon 17873444 17873845 17873444 ID=MS.gene56888.t1.exon3;Parent=MS.gene56888.t1
chr8.1 CDS 17873444 17873845 17873444 ID=cds.MS.gene56888.t1;Parent=MS.gene56888.t1
Gene Sequence

>MS.gene56888

ATGTCTTCTGCTTCAACCACCGCTGACTCCGCCATCTCCGGCGAATTCATGCTCTTTGGAGTTAGAGTCGTCGTTGATTCTATGAGAAAGAGTGTCAGTATGAACAATCTCTCACAATACGAACTACAACCTCAAGACAACAACAACATCATCAAGGATGATAATATCAACAAAGACGTTATCACCGCCGGTTACGCCTCCGCCGATGATGCCGTTCCTCAAAACTCCGGCAGAAACCGCGACCGCGAACGTAAACGAGGTTCGAATTCGATCAATCTCTTCAATCTAGATTATTGTTATTGATTGAAATTGAAACGTGATTATTGTTATTGATTTTGGATCAGGGATTCCGTGGACGGAGGAAGAGCACAAGCTGTTCTTAGTTGGATTGCAGAAAGTTGGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTAAAAACAAGAACACCTACGCAGGTTGCAAGTCATGCTCAAAAGTACTTCCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACTGACACGGTAACTTTTCCGGCAATCTCTTTATAGAAACAGTAAAAAAAACCTTTTGCCTAAATTTGTATTCAATTAGTTACTAATCAATAGAGTAGTGTTATGGTATTGCAAAAATGAGATTTAATTTTCTGTTATTTATTGGTTTTCTTATTTTGATTCAATCAAGTTCATTGCTATTATTATTATTTTTGCCATGTTAGGAACTTGAAAGATTGTAAAGGAAACACAAAAATATAATGGAAATGCAACTTTTGCTTTTTTTTTTTTGTGGAAATCCTTTGGTAGTTGTGAAGAAATCTAACATAACTAGAATGAAGAGTGATATAAGATTATAAGGATTATGCATTTCAAAGAGTTTACTCGCCAAGAGTTGATATATATCTTGTAATAGTTGTGATGTATCTGGACTGTAGAGAAATAATATATATGTTAGGAACGAGTAACCAAAGTTGATGTATTTGGTACAAATTTTGAACCGAATACATTAACTTTCTTTGACTTATTTTTGTTAATATTTTGTTTAGTGTATAATTTACATGATCTGAACAACTTTTGTGTTTATGTCAGGTGACTGCAATTCCAATGGAGGAAGAACAGGTCAAGAATCAAGATAATGTTTCACAGTGCCCTGCAGCCCCCGAAGCTAGAAAAATCAATGGATTTCCTTTTATGTCAGTATATGAGTTGGGTGTTAACGAGAGTACTCCAATGGAAGAACTCACTCTTGGACAAGGAAATGTGAAACACAATTTCCAAACCAACAATCTATTCAATCCAATTCCTTTTGTTGTTTCAGATCCCAAAGCTTCCATTGTGTCTGATATCACCTCTAGTTCCAGTTCATCCATTGACACTCCAACACTTTCCCTCGGGCTATCCTTCTCGTCCAATCAAAGGAAGACATCATCAACACATTTACATGCAATGCCATGTTTCAAAAATGGAGATAACATCATAAGTGTTGCTTAA
Protein sequence

>MS.gene56888.t1

MSSASTTADSAISGEFMLFGVRVVVDSMRKSVSMNNLSQYELQPQDNNNIIKDDNINKDVITAGYASADDAVPQNSGRNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVTAIPMEEEQVKNQDNVSQCPAAPEARKINGFPFMSVYELGVNESTPMEELTLGQGNVKHNFQTNNLFNPIPFVVSDPKASIVSDITSSSSSSIDTPTLSLGLSFSSNQRKTSSTHLHAMPCFKNGDNIISVA