Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56936.t1 | XP_017973320.1 | 82 | 50 | 9 | 0 | 83 | 132 | 784 | 833 | 2.60E-12 | 82 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56936.t1 | Q9C9U5 | 76.0 | 50 | 12 | 0 | 83 | 132 | 771 | 820 | 3.1e-14 | 79.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56936.t1 | A0A061G2N4 | 82.0 | 50 | 9 | 0 | 83 | 132 | 784 | 833 | 1.9e-12 | 82.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56936.t1 | MTR_5g015770 | 81.633 | 49 | 9 | 0 | 83 | 131 | 63 | 111 | 6.08e-22 | 85.1 |
| MS.gene56936.t1 | MTR_6g079540 | 44.094 | 127 | 57 | 4 | 17 | 132 | 609 | 732 | 3.78e-20 | 86.3 |
| MS.gene56936.t1 | MTR_6g079540 | 44.094 | 127 | 57 | 4 | 17 | 132 | 361 | 484 | 6.12e-20 | 85.5 |
| MS.gene56936.t1 | MTR_8g107000 | 74.000 | 50 | 13 | 0 | 83 | 132 | 752 | 801 | 7.96e-18 | 79.7 |
| MS.gene56936.t1 | MTR_1g081790 | 71.154 | 52 | 15 | 0 | 83 | 134 | 712 | 763 | 6.86e-17 | 77.0 |
| MS.gene56936.t1 | MTR_1g081790 | 71.154 | 52 | 15 | 0 | 83 | 134 | 712 | 763 | 7.30e-17 | 77.0 |
| MS.gene56936.t1 | MTR_1g076490 | 71.154 | 52 | 11 | 1 | 9 | 56 | 135 | 186 | 5.73e-16 | 71.6 |
| MS.gene56936.t1 | MTR_1g016300 | 62.000 | 50 | 19 | 0 | 83 | 132 | 686 | 735 | 1.72e-15 | 72.8 |
| MS.gene56936.t1 | MTR_1g016300 | 62.000 | 50 | 19 | 0 | 83 | 132 | 686 | 735 | 3.62e-15 | 72.0 |
| MS.gene56936.t1 | MTR_1g061190 | 44.048 | 84 | 42 | 3 | 53 | 132 | 545 | 627 | 8.12e-13 | 65.1 |
| MS.gene56936.t1 | MTR_2g092980 | 48.000 | 50 | 26 | 0 | 83 | 132 | 580 | 629 | 1.67e-12 | 64.3 |
| MS.gene56936.t1 | MTR_2g092980 | 48.000 | 50 | 26 | 0 | 83 | 132 | 544 | 593 | 1.79e-12 | 64.3 |
| MS.gene56936.t1 | MTR_4g080030 | 48.000 | 50 | 26 | 0 | 83 | 132 | 570 | 619 | 1.80e-12 | 64.3 |
| MS.gene56936.t1 | MTR_2g092980 | 48.000 | 50 | 26 | 0 | 83 | 132 | 561 | 610 | 1.83e-12 | 64.3 |
| MS.gene56936.t1 | MTR_2g092980 | 48.000 | 50 | 26 | 0 | 83 | 132 | 525 | 574 | 2.04e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56936.t1 | AT1G73660 | 76.000 | 50 | 12 | 0 | 83 | 132 | 771 | 820 | 2.60e-19 | 84.0 |
| MS.gene56936.t1 | AT1G18160 | 73.469 | 49 | 13 | 0 | 84 | 132 | 739 | 787 | 5.09e-18 | 80.1 |
| MS.gene56936.t1 | AT1G18160 | 73.469 | 49 | 13 | 0 | 84 | 132 | 739 | 787 | 5.52e-18 | 80.1 |
| MS.gene56936.t1 | AT1G08720 | 70.000 | 50 | 15 | 0 | 83 | 132 | 692 | 741 | 1.49e-16 | 75.9 |
| MS.gene56936.t1 | AT1G08720 | 70.000 | 50 | 15 | 0 | 83 | 132 | 692 | 741 | 1.71e-16 | 75.9 |
| MS.gene56936.t1 | AT5G11850 | 66.000 | 50 | 17 | 0 | 83 | 132 | 632 | 681 | 2.15e-15 | 72.8 |
| MS.gene56936.t1 | AT5G03730 | 38.655 | 119 | 63 | 5 | 19 | 132 | 510 | 623 | 1.72e-14 | 70.1 |
| MS.gene56936.t1 | AT5G03730 | 38.655 | 119 | 63 | 5 | 19 | 132 | 510 | 623 | 1.72e-14 | 70.1 |
| MS.gene56936.t1 | AT3G58640 | 50.000 | 50 | 25 | 0 | 83 | 132 | 576 | 625 | 7.56e-13 | 65.5 |
| MS.gene56936.t1 | AT3G58640 | 50.000 | 50 | 25 | 0 | 83 | 132 | 576 | 625 | 7.56e-13 | 65.5 |
| MS.gene56936.t1 | AT2G31010 | 50.000 | 50 | 25 | 0 | 83 | 132 | 542 | 591 | 2.78e-12 | 63.5 |
| MS.gene56936.t1 | AT2G31010 | 50.000 | 50 | 25 | 0 | 83 | 132 | 542 | 591 | 2.78e-12 | 63.5 |
| MS.gene56936.t1 | AT3G06620 | 57.692 | 52 | 22 | 0 | 83 | 134 | 517 | 568 | 7.72e-12 | 62.4 |
Find 40 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGTCTTGTAACCAAATT+TGG | 0.143545 | 8.1:-18750122 | None:intergenic |
| GATAGTGTCTTTCAAGTTTC+AGG | 0.198970 | 8.1:+18750234 | MS.gene56936:intron |
| TGTAACTCGACCTCCAAATT+TGG | 0.224850 | 8.1:+18750109 | MS.gene56936:CDS |
| GCTTTGTTGGTGGACTTGCC+TGG | 0.330042 | 8.1:-18749040 | None:intergenic |
| CCAACTTCCGCTATGGAAAT+CGG | 0.340140 | 8.1:+18749071 | MS.gene56936:CDS |
| CTCCTCTATCTTTCATCCAT+TGG | 0.344424 | 8.1:-18749106 | None:intergenic |
| TCCAAATGTGGTTCTCTTCA+TGG | 0.369032 | 8.1:+18750082 | MS.gene56936:CDS |
| CGCTTTCTCAAGAGCTTCCC+AGG | 0.378403 | 8.1:+18749022 | MS.gene56936:CDS |
| CCCATGAAGAGAACCACATT+TGG | 0.424463 | 8.1:-18750083 | None:intergenic |
| CTTTGTTGGTGGACTTGCCT+GGG | 0.430787 | 8.1:-18749039 | None:intergenic |
| CCGATTTCCATAGCGGAAGT+TGG | 0.442412 | 8.1:-18749071 | None:intergenic |
| TATGCTAAGGAGGTTCCATT+TGG | 0.455618 | 8.1:+18750257 | MS.gene56936:CDS |
| GTTGGATACCGATGCTTTGT+TGG | 0.472781 | 8.1:-18749053 | None:intergenic |
| CAACTTCCGCTATGGAAATC+GGG | 0.481426 | 8.1:+18749072 | MS.gene56936:CDS |
| TGAAAGATAGAGGAGAAGAA+TGG | 0.485424 | 8.1:+18749114 | MS.gene56936:CDS |
| TTGTAGGAAGTTGCTGTCAA+AGG | 0.489329 | 8.1:+18749728 | MS.gene56936:intron |
| TGTAGGAAGTTGCTGTCAAA+GGG | 0.496653 | 8.1:+18749729 | MS.gene56936:intron |
| TTCAAGTTTCAGGTATGCTA+AGG | 0.497163 | 8.1:+18750244 | MS.gene56936:CDS |
| AGTAAAAGAAATCACAGAAG+AGG | 0.503063 | 8.1:+18749137 | MS.gene56936:CDS |
| TGCCAATGGATGAAAGATAG+AGG | 0.513769 | 8.1:+18749104 | MS.gene56936:CDS |
| GGTACTTCTTGTGAACCAAA+TGG | 0.514888 | 8.1:-18750272 | None:intergenic |
| CGATTCGACGATTTCACCAA+AGG | 0.520064 | 8.1:+18748991 | MS.gene56936:CDS |
| CCAAATGTGGTTCTCTTCAT+GGG | 0.522890 | 8.1:+18750083 | MS.gene56936:CDS |
| TGGTTATAGCAGGTTAGAAA+AGG | 0.522920 | 8.1:+18749273 | MS.gene56936:intron |
| TGGTGAAATCGTCGAATCGA+AGG | 0.540324 | 8.1:-18748987 | None:intergenic |
| TCGGTATCCAACTTCCGCTA+TGG | 0.541061 | 8.1:+18749064 | MS.gene56936:CDS |
| AAGTTTCAGGTATGCTAAGG+AGG | 0.550844 | 8.1:+18750247 | MS.gene56936:CDS |
| AGTCTTGTAACCAAATTTGG+AGG | 0.555282 | 8.1:-18750119 | None:intergenic |
| AGAAATCACAGAAGAGGGAA+AGG | 0.561987 | 8.1:+18749143 | MS.gene56936:CDS |
| GGATACCGATGCTTTGTTGG+TGG | 0.578197 | 8.1:-18749050 | None:intergenic |
| GTAAAAGAAATCACAGAAGA+GGG | 0.579912 | 8.1:+18749138 | MS.gene56936:CDS |
| TCAGAGTAATGAAAATAATG+AGG | 0.585731 | 8.1:+18750057 | MS.gene56936:CDS |
| TCGGGAAAGAAAATTGCCAA+TGG | 0.590224 | 8.1:+18749090 | MS.gene56936:CDS |
| TTATAGCAGGTTAGAAAAGG+AGG | 0.604329 | 8.1:+18749276 | MS.gene56936:intron |
| TCACTTATGAATTCTTCAAG+TGG | 0.611451 | 8.1:-18749779 | None:intergenic |
| AATAATGAGGCATCCAAATG+TGG | 0.616802 | 8.1:+18750070 | MS.gene56936:CDS |
| TTCTTTCCCGATTTCCATAG+CGG | 0.630919 | 8.1:-18749078 | None:intergenic |
| CAAGTCCACCAACAAAGCAT+CGG | 0.636350 | 8.1:+18749045 | MS.gene56936:CDS |
| TCCATTCAAACAGCAGACAC+AGG | 0.637772 | 8.1:-18750293 | None:intergenic |
| ACTTGAAGAATTCATAAGTG+AGG | 0.663122 | 8.1:+18749781 | MS.gene56936:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr8.1:18749364-18749345 | None:intergenic | 0.0% |
| !! | ATTAAAAAAAAAAACTATAC+AGG | - | chr8.1:18749211-18749230 | None:intergenic | 10.0% |
| !! | AAACTAAAGCTCATAATTAT+CGG | - | chr8.1:18749487-18749506 | None:intergenic | 20.0% |
| !! | TATATATACCAGAAAACTTA+CGG | + | chr8.1:18750016-18750035 | MS.gene56936:intron | 20.0% |
| !!! | AAAGTTATTATTTGGTTTGT+AGG | + | chr8.1:18749712-18749731 | MS.gene56936:intron | 20.0% |
| !!! | AAATTGTTTCACATTTGTTA+TGG | + | chr8.1:18750210-18750229 | MS.gene56936:intron | 20.0% |
| !!! | AATTACATTTAGAACATGTT+TGG | - | chr8.1:18749443-18749462 | None:intergenic | 20.0% |
| !!! | TTTTATAAATATGGTATGAC+TGG | + | chr8.1:18749253-18749272 | MS.gene56936:intron | 20.0% |
| ! | AAATTGCCCCAAAATAAAAA+AGG | - | chr8.1:18749659-18749678 | None:intergenic | 25.0% |
| ! | AATTGCCCCAAAATAAAAAA+GGG | - | chr8.1:18749658-18749677 | None:intergenic | 25.0% |
| ! | ACCATACAACAAAAATTTGT+AGG | - | chr8.1:18749583-18749602 | None:intergenic | 25.0% |
| ! | AGACTTTATTATTAGTGACT+AGG | + | chr8.1:18750137-18750156 | MS.gene56936:intron | 25.0% |
| ! | TAAGTTCATGTATATCTCTA+TGG | + | chr8.1:18749919-18749938 | MS.gene56936:intron | 25.0% |
| ! | TACGGTATTTAATTGCAAAT+AGG | + | chr8.1:18750034-18750053 | MS.gene56936:intron | 25.0% |
| ! | TCAGAGTAATGAAAATAATG+AGG | + | chr8.1:18750057-18750076 | MS.gene56936:CDS | 25.0% |
| ! | TTCACAGCAAAGTTATTATT+TGG | + | chr8.1:18749704-18749723 | MS.gene56936:intron | 25.0% |
| !! | ATTAAATACCGTAAGTTTTC+TGG | - | chr8.1:18750027-18750046 | None:intergenic | 25.0% |
| !! | TAAAGTCTTGTAACCAAATT+TGG | - | chr8.1:18750125-18750144 | None:intergenic | 25.0% |
| !!! | ACAAATTTTTGTTGTATGGT+GGG | + | chr8.1:18749583-18749602 | MS.gene56936:intron | 25.0% |
| !!! | ACCTACAAATTTTTGTTGTA+TGG | + | chr8.1:18749579-18749598 | MS.gene56936:intron | 25.0% |
| !!! | TACAAATTTTTGTTGTATGG+TGG | + | chr8.1:18749582-18749601 | MS.gene56936:intron | 25.0% |
| ACTTGAAGAATTCATAAGTG+AGG | + | chr8.1:18749781-18749800 | MS.gene56936:CDS | 30.0% | |
| AGAATTCATAAGTGAGGTAT+AGG | + | chr8.1:18749787-18749806 | MS.gene56936:intron | 30.0% | |
| AGTAAAAGAAATCACAGAAG+AGG | + | chr8.1:18749137-18749156 | MS.gene56936:CDS | 30.0% | |
| ATTGCCCCAAAATAAAAAAG+GGG | - | chr8.1:18749657-18749676 | None:intergenic | 30.0% | |
| GAATGCAATCATCTACAATA+AGG | - | chr8.1:18749687-18749706 | None:intergenic | 30.0% | |
| GATTATAGAGCAATCATTTG+TGG | + | chr8.1:18749889-18749908 | MS.gene56936:intron | 30.0% | |
| GTAAAAGAAATCACAGAAGA+GGG | + | chr8.1:18749138-18749157 | MS.gene56936:CDS | 30.0% | |
| GTGTTGAAAAAGAAATACAG+TGG | - | chr8.1:18749865-18749884 | None:intergenic | 30.0% | |
| TCACTTATGAATTCTTCAAG+TGG | - | chr8.1:18749782-18749801 | None:intergenic | 30.0% | |
| ! | CATTTAGAACATGTTTGGAT+AGG | - | chr8.1:18749438-18749457 | None:intergenic | 30.0% |
| !!! | AGAAAGCGTTTTTTTTCCTT+TGG | - | chr8.1:18749010-18749029 | None:intergenic | 30.0% |
| !!! | ATTGGTGAACCTTTTTTTTG+GGG | + | chr8.1:18749302-18749321 | MS.gene56936:intron | 30.0% |
| !!! | CATTGGTGAACCTTTTTTTT+GGG | + | chr8.1:18749301-18749320 | MS.gene56936:intron | 30.0% |
| !!! | TCATTGGTGAACCTTTTTTT+TGG | + | chr8.1:18749300-18749319 | MS.gene56936:intron | 30.0% |
| AAAATAAAAAAGGGGCAACC+CGG | - | chr8.1:18749649-18749668 | None:intergenic | 35.0% | |
| ACACATACACATAGTGAAAG+AGG | - | chr8.1:18749821-18749840 | None:intergenic | 35.0% | |
| CTACAGCTACATTTAGATGA+TGG | + | chr8.1:18749965-18749984 | MS.gene56936:intron | 35.0% | |
| CTGTAGCATAATCAAGACAT+TGG | - | chr8.1:18749951-18749970 | None:intergenic | 35.0% | |
| TGAAAGATAGAGGAGAAGAA+TGG | + | chr8.1:18749114-18749133 | MS.gene56936:CDS | 35.0% | |
| TGACTAGGTTAACCTTTGTA+CGG | + | chr8.1:18750152-18750171 | MS.gene56936:intron | 35.0% | |
| TGGTTATAGCAGGTTAGAAA+AGG | + | chr8.1:18749273-18749292 | MS.gene56936:intron | 35.0% | |
| TTATAGCAGGTTAGAAAAGG+AGG | + | chr8.1:18749276-18749295 | MS.gene56936:intron | 35.0% | |
| ! | AATAATGAGGCATCCAAATG+TGG | + | chr8.1:18750070-18750089 | MS.gene56936:CDS | 35.0% |
| ! | AGTCTTGTAACCAAATTTGG+AGG | - | chr8.1:18750122-18750141 | None:intergenic | 35.0% |
| ! | TTCAAGTTTCAGGTATGCTA+AGG | + | chr8.1:18750244-18750263 | MS.gene56936:CDS | 35.0% |
| !! | GATAGTGTCTTTCAAGTTTC+AGG | + | chr8.1:18750234-18750253 | MS.gene56936:intron | 35.0% |
| !!! | GGTTGCCCCTTTTTTATTTT+GGG | + | chr8.1:18749649-18749668 | MS.gene56936:intron | 35.0% |
| !!! | GTTGCCCCTTTTTTATTTTG+GGG | + | chr8.1:18749650-18749669 | MS.gene56936:intron | 35.0% |
| !!! | TTGGTGAACCTTTTTTTTGG+GGG | + | chr8.1:18749303-18749322 | MS.gene56936:intron | 35.0% |
| ACGAACAGTAGGGAAAAGTA+TGG | + | chr8.1:18749183-18749202 | MS.gene56936:intron | 40.0% | |
| AGAAATCACAGAAGAGGGAA+AGG | + | chr8.1:18749143-18749162 | MS.gene56936:CDS | 40.0% | |
| CAAAAGAGAACTCCGTACAA+AGG | - | chr8.1:18750167-18750186 | None:intergenic | 40.0% | |
| CCAAATGTGGTTCTCTTCAT+GGG | + | chr8.1:18750083-18750102 | MS.gene56936:CDS | 40.0% | |
| CTCCTCTATCTTTCATCCAT+TGG | - | chr8.1:18749109-18749128 | None:intergenic | 40.0% | |
| GGTACTTCTTGTGAACCAAA+TGG | - | chr8.1:18750275-18750294 | None:intergenic | 40.0% | |
| GGTTAGAAAAGGAGGTTCAT+TGG | + | chr8.1:18749284-18749303 | MS.gene56936:intron | 40.0% | |
| TATGCTAAGGAGGTTCCATT+TGG | + | chr8.1:18750257-18750276 | MS.gene56936:CDS | 40.0% | |
| TCCAAATGTGGTTCTCTTCA+TGG | + | chr8.1:18750082-18750101 | MS.gene56936:CDS | 40.0% | |
| TCGGGAAAGAAAATTGCCAA+TGG | + | chr8.1:18749090-18749109 | MS.gene56936:CDS | 40.0% | |
| TGCCAATGGATGAAAGATAG+AGG | + | chr8.1:18749104-18749123 | MS.gene56936:CDS | 40.0% | |
| TGTAACTCGACCTCCAAATT+TGG | + | chr8.1:18750109-18750128 | MS.gene56936:CDS | 40.0% | |
| TGTAGGAAGTTGCTGTCAAA+GGG | + | chr8.1:18749729-18749748 | MS.gene56936:intron | 40.0% | |
| TTCTTTCCCGATTTCCATAG+CGG | - | chr8.1:18749081-18749100 | None:intergenic | 40.0% | |
| TTGAGAAGAGACGAACAGTA+GGG | + | chr8.1:18749173-18749192 | MS.gene56936:intron | 40.0% | |
| TTGTAGGAAGTTGCTGTCAA+AGG | + | chr8.1:18749728-18749747 | MS.gene56936:intron | 40.0% | |
| TTTGAGAAGAGACGAACAGT+AGG | + | chr8.1:18749172-18749191 | MS.gene56936:intron | 40.0% | |
| ! | AAGTTTCAGGTATGCTAAGG+AGG | + | chr8.1:18750247-18750266 | MS.gene56936:CDS | 40.0% |
| ! | ATGGTATGACTGGTTATAGC+AGG | + | chr8.1:18749263-18749282 | MS.gene56936:intron | 40.0% |
| ! | CGAACAGTAGGGAAAAGTAT+GGG | + | chr8.1:18749184-18749203 | MS.gene56936:intron | 40.0% |
| !!! | GGGTTGCCCCTTTTTTATTT+TGG | + | chr8.1:18749648-18749667 | MS.gene56936:intron | 40.0% |
| AGCATGGACCCCCAAAAAAA+AGG | - | chr8.1:18749314-18749333 | None:intergenic | 45.0% | |
| CAACTTCCGCTATGGAAATC+GGG | + | chr8.1:18749072-18749091 | MS.gene56936:CDS | 45.0% | |
| CAAGTCCACCAACAAAGCAT+CGG | + | chr8.1:18749045-18749064 | MS.gene56936:CDS | 45.0% | |
| CCAACTTCCGCTATGGAAAT+CGG | + | chr8.1:18749071-18749090 | MS.gene56936:CDS | 45.0% | |
| CCCATGAAGAGAACCACATT+TGG | - | chr8.1:18750086-18750105 | None:intergenic | 45.0% | |
| CGATTCGACGATTTCACCAA+AGG | + | chr8.1:18748991-18749010 | MS.gene56936:CDS | 45.0% | |
| GTTGGATACCGATGCTTTGT+TGG | - | chr8.1:18749056-18749075 | None:intergenic | 45.0% | |
| TGGTGAAATCGTCGAATCGA+AGG | - | chr8.1:18748990-18749009 | None:intergenic | 45.0% | |
| !!! | TTTTTTGGGGGTCCATGCTA+GGG | + | chr8.1:18749315-18749334 | MS.gene56936:intron | 45.0% |
| !!! | TTTTTTTGGGGGTCCATGCT+AGG | + | chr8.1:18749314-18749333 | MS.gene56936:intron | 45.0% |
| !!! | TTCTTTTTTTTTTATAAATA+TGG | + | chr8.1:18749244-18749263 | MS.gene56936:intron | 5.0% |
| TATATAGGTGCCCCCTAGCA+TGG | - | chr8.1:18749330-18749349 | None:intergenic | 50.0% | |
| TCGGTATCCAACTTCCGCTA+TGG | + | chr8.1:18749064-18749083 | MS.gene56936:CDS | 50.0% | |
| ! | CCGATTTCCATAGCGGAAGT+TGG | - | chr8.1:18749074-18749093 | None:intergenic | 50.0% |
| ! | GGATACCGATGCTTTGTTGG+TGG | - | chr8.1:18749053-18749072 | None:intergenic | 50.0% |
| !! | CTTTGTTGGTGGACTTGCCT+GGG | - | chr8.1:18749042-18749061 | None:intergenic | 50.0% |
| !! | TTTTTGGGGGTCCATGCTAG+GGG | + | chr8.1:18749316-18749335 | MS.gene56936:intron | 50.0% |
| ACTAGAGCTCCCGCATATGC+AGG | - | chr8.1:18749623-18749642 | None:intergenic | 55.0% | |
| CGCTTTCTCAAGAGCTTCCC+AGG | + | chr8.1:18749022-18749041 | MS.gene56936:CDS | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | chr8.1:18749622-18749641 | None:intergenic | 55.0% | |
| !! | GCTTTGTTGGTGGACTTGCC+TGG | - | chr8.1:18749043-18749062 | None:intergenic | 55.0% |
| !! | TTTTGGGGGTCCATGCTAGG+GGG | + | chr8.1:18749317-18749336 | MS.gene56936:intron | 55.0% |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr8.1:18749610-18749629 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr8.1:18749610-18749629 | MS.gene56936:intron | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr8.1:18749611-18749630 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr8.1:18749611-18749630 | MS.gene56936:intron | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr8.1:18749627-18749646 | MS.gene56936:intron | 60.0% |
| ! | TGTATGGTGGGACCCCTTCC+CGG | + | chr8.1:18749595-18749614 | MS.gene56936:intron | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr8.1:18749612-18749631 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr8.1:18749616-18749635 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr8.1:18749617-18749636 | None:intergenic | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr8.1:18749628-18749647 | MS.gene56936:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 18748957 | 18750310 | 18748957 | ID=MS.gene56936 |
| chr8.1 | mRNA | 18748957 | 18750310 | 18748957 | ID=MS.gene56936.t1;Parent=MS.gene56936 |
| chr8.1 | exon | 18748957 | 18749189 | 18748957 | ID=MS.gene56936.t1.exon1;Parent=MS.gene56936.t1 |
| chr8.1 | CDS | 18748957 | 18749189 | 18748957 | ID=cds.MS.gene56936.t1;Parent=MS.gene56936.t1 |
| chr8.1 | exon | 18749285 | 18749297 | 18749285 | ID=MS.gene56936.t1.exon2;Parent=MS.gene56936.t1 |
| chr8.1 | CDS | 18749285 | 18749297 | 18749285 | ID=cds.MS.gene56936.t1;Parent=MS.gene56936.t1 |
| chr8.1 | exon | 18749734 | 18749802 | 18749734 | ID=MS.gene56936.t1.exon3;Parent=MS.gene56936.t1 |
| chr8.1 | CDS | 18749734 | 18749802 | 18749734 | ID=cds.MS.gene56936.t1;Parent=MS.gene56936.t1 |
| chr8.1 | exon | 18750056 | 18750130 | 18750056 | ID=MS.gene56936.t1.exon4;Parent=MS.gene56936.t1 |
| chr8.1 | CDS | 18750056 | 18750130 | 18750056 | ID=cds.MS.gene56936.t1;Parent=MS.gene56936.t1 |
| chr8.1 | exon | 18750239 | 18750310 | 18750239 | ID=MS.gene56936.t1.exon5;Parent=MS.gene56936.t1 |
| chr8.1 | CDS | 18750239 | 18750310 | 18750239 | ID=cds.MS.gene56936.t1;Parent=MS.gene56936.t1 |
| Gene Sequence |
| Protein sequence |
