Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56949.t1 | XP_003608956.1 | 96.7 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 1.10E-102 | 382.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56949.t1 | Q94JX5 | 68.0 | 175 | 55 | 1 | 3 | 176 | 2 | 176 | 1.5e-71 | 270.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56949.t1 | G7JNV0 | 96.7 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 7.9e-103 | 382.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56949.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56949.t1 | MTR_4g106800 | 96.685 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 4.33e-131 | 365 |
| MS.gene56949.t1 | MTR_1g017950 | 67.429 | 175 | 56 | 1 | 3 | 176 | 2 | 176 | 5.53e-89 | 259 |
| MS.gene56949.t1 | MTR_3g070050 | 53.846 | 182 | 79 | 3 | 3 | 181 | 2 | 181 | 1.14e-67 | 204 |
| MS.gene56949.t1 | MTR_8g097300 | 52.000 | 175 | 77 | 2 | 3 | 177 | 2 | 169 | 1.49e-61 | 190 |
| MS.gene56949.t1 | MTR_8g097300 | 52.113 | 71 | 34 | 0 | 2 | 72 | 93 | 163 | 3.21e-19 | 81.6 |
| MS.gene56949.t1 | MTR_8g031490 | 49.721 | 179 | 77 | 2 | 3 | 177 | 2 | 171 | 5.20e-59 | 183 |
| MS.gene56949.t1 | MTR_7g076720 | 48.555 | 173 | 82 | 2 | 3 | 173 | 2 | 169 | 5.64e-57 | 178 |
| MS.gene56949.t1 | MTR_7g076720 | 41.772 | 79 | 46 | 0 | 4 | 82 | 99 | 177 | 7.05e-15 | 70.1 |
| MS.gene56949.t1 | MTR_7g076720 | 43.056 | 72 | 41 | 0 | 103 | 174 | 3 | 74 | 1.08e-14 | 69.3 |
| MS.gene56949.t1 | MTR_3g070050 | 48.571 | 140 | 67 | 3 | 45 | 181 | 2 | 139 | 7.47e-44 | 143 |
| MS.gene56949.t1 | MTR_3g070050 | 43.820 | 89 | 49 | 1 | 4 | 92 | 61 | 148 | 2.16e-19 | 80.5 |
| MS.gene56949.t1 | MTR_1g106100 | 46.847 | 111 | 52 | 2 | 60 | 168 | 20 | 125 | 1.65e-31 | 111 |
| MS.gene56949.t1 | MTR_3g070033 | 49.153 | 59 | 30 | 0 | 123 | 181 | 6 | 64 | 8.67e-18 | 73.9 |
| MS.gene56949.t1 | MTR_3g070033 | 42.029 | 69 | 39 | 1 | 24 | 92 | 6 | 73 | 4.42e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56949.t1 | AT1G10200 | 68.000 | 175 | 55 | 1 | 3 | 176 | 2 | 176 | 2.11e-89 | 259 |
| MS.gene56949.t1 | AT3G55770 | 55.000 | 180 | 78 | 2 | 3 | 181 | 2 | 179 | 3.91e-69 | 209 |
| MS.gene56949.t1 | AT3G55770 | 55.000 | 180 | 78 | 2 | 3 | 181 | 2 | 179 | 3.91e-69 | 209 |
| MS.gene56949.t1 | AT3G55770 | 55.000 | 180 | 78 | 2 | 3 | 181 | 2 | 179 | 3.91e-69 | 209 |
| MS.gene56949.t1 | AT3G55770 | 55.000 | 180 | 78 | 2 | 3 | 181 | 2 | 179 | 3.91e-69 | 209 |
| MS.gene56949.t1 | AT2G39900 | 51.955 | 179 | 86 | 0 | 3 | 181 | 2 | 180 | 8.25e-68 | 205 |
| MS.gene56949.t1 | AT3G61230 | 52.601 | 173 | 79 | 1 | 1 | 173 | 1 | 170 | 5.29e-66 | 201 |
| MS.gene56949.t1 | AT3G61230 | 39.560 | 91 | 55 | 0 | 4 | 94 | 100 | 190 | 3.84e-17 | 76.3 |
| MS.gene56949.t1 | AT3G61230 | 44.444 | 72 | 40 | 0 | 103 | 174 | 4 | 75 | 1.76e-15 | 71.6 |
| MS.gene56949.t1 | AT2G45800 | 52.907 | 172 | 76 | 2 | 3 | 173 | 2 | 169 | 3.03e-62 | 192 |
| MS.gene56949.t1 | AT2G45800 | 45.349 | 86 | 47 | 0 | 4 | 89 | 99 | 184 | 2.57e-17 | 76.6 |
| MS.gene56949.t1 | AT2G45800 | 45.833 | 72 | 39 | 0 | 103 | 174 | 3 | 74 | 3.26e-16 | 73.9 |
| MS.gene56949.t1 | AT1G01780 | 51.744 | 172 | 76 | 2 | 3 | 173 | 2 | 167 | 3.53e-62 | 191 |
| MS.gene56949.t1 | AT1G01780 | 47.222 | 72 | 38 | 0 | 103 | 174 | 3 | 74 | 1.45e-16 | 74.3 |
| MS.gene56949.t1 | AT1G10200 | 65.152 | 132 | 45 | 1 | 46 | 176 | 3 | 134 | 5.92e-62 | 189 |
| MS.gene56949.t1 | AT1G10200 | 45.833 | 72 | 39 | 0 | 4 | 75 | 61 | 132 | 8.02e-16 | 71.2 |
| MS.gene56949.t1 | AT3G55770 | 46.262 | 214 | 78 | 3 | 3 | 181 | 2 | 213 | 1.69e-61 | 191 |
| MS.gene56949.t1 | AT3G55770 | 57.377 | 122 | 49 | 2 | 3 | 123 | 2 | 121 | 5.81e-43 | 140 |
| MS.gene56949.t1 | AT3G55770 | 48.611 | 72 | 37 | 0 | 103 | 174 | 3 | 74 | 8.98e-19 | 78.6 |
| MS.gene56949.t1 | AT2G45800 | 50.000 | 140 | 64 | 3 | 35 | 173 | 4 | 138 | 2.21e-42 | 140 |
| MS.gene56949.t1 | AT2G45800 | 45.349 | 86 | 47 | 0 | 4 | 89 | 68 | 153 | 1.02e-17 | 77.4 |
| MS.gene56949.t1 | AT3G55770 | 53.600 | 125 | 55 | 2 | 3 | 126 | 2 | 124 | 4.46e-40 | 133 |
| MS.gene56949.t1 | AT3G55770 | 48.611 | 72 | 37 | 0 | 103 | 174 | 3 | 74 | 5.25e-19 | 79.0 |
Find 30 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAGATTGAACAAGTCTA+AGG | 0.258117 | 8.1:-18960240 | None:intergenic |
| CTTGTTCAATCTTATCAAAT+TGG | 0.295718 | 8.1:+18960247 | None:intergenic |
| CTTTAAGATGACTGGCAGTT+TGG | 0.324339 | 8.1:-18961762 | MS.gene56949:CDS |
| TTTGAGATGGCATCATTTGC+AGG | 0.338265 | 8.1:-18962946 | None:intergenic |
| TTGAAACCTTGTTATATGCT+TGG | 0.394784 | 8.1:+18961494 | None:intergenic |
| TATGGTGATGTCTACAATAA+AGG | 0.395154 | 8.1:+18960301 | None:intergenic |
| TCATGTGCCACATAGTTTGA+TGG | 0.445617 | 8.1:+18960330 | None:intergenic |
| TCTGTTTGAAGATCTGAGTA+TGG | 0.453506 | 8.1:+18960283 | None:intergenic |
| CTTACCATAAGACTTGCTTC+AGG | 0.455370 | 8.1:-18960380 | MS.gene56949:CDS |
| AGTTGAAAGATCTACTGATC+AGG | 0.479082 | 8.1:-18961592 | MS.gene56949:intron |
| CATGTGAAAAGAAAGTCTAC+TGG | 0.491184 | 8.1:-18962903 | MS.gene56949:CDS |
| AACAGTATACCCAATTGAAA+AGG | 0.495615 | 8.1:-18961428 | MS.gene56949:intron |
| GATCAACTCTTTAAGATGAC+TGG | 0.501872 | 8.1:-18961770 | MS.gene56949:CDS |
| TTAAAGAGTTGATCAAAATG+AGG | 0.517865 | 8.1:+18961779 | None:intergenic |
| TGCACCTGAAGCAAGTCTTA+TGG | 0.519828 | 8.1:+18960376 | None:intergenic |
| TACTCAGATCTTCAAACAGA+AGG | 0.531322 | 8.1:-18960280 | MS.gene56949:CDS |
| CTTCAGATGCCACCATTGCA+AGG | 0.542591 | 8.1:-18962836 | MS.gene56949:CDS |
| ACTTGCTTCAGGTGCACACA+TGG | 0.555007 | 8.1:-18960369 | MS.gene56949:CDS |
| ATAAGATTGAACAAGTCTAA+GGG | 0.567401 | 8.1:-18960239 | None:intergenic |
| TGAGCGTGCCCTTGCAATGG+TGG | 0.569002 | 8.1:+18962827 | None:intergenic |
| TTCAGATGCCACCATTGCAA+GGG | 0.577839 | 8.1:-18962835 | MS.gene56949:CDS |
| ACTCAGATCTTCAAACAGAA+GGG | 0.607367 | 8.1:-18960279 | MS.gene56949:CDS |
| CCATTGCAAGGGCACGCTCA+AGG | 0.607912 | 8.1:-18962824 | MS.gene56949:intron |
| ATGTGAAAAGAAAGTCTACT+GGG | 0.609203 | 8.1:-18962902 | MS.gene56949:CDS |
| CCTTGAGCGTGCCCTTGCAA+TGG | 0.618784 | 8.1:+18962824 | None:intergenic |
| AATCAGTCCATCAAACTATG+TGG | 0.634185 | 8.1:-18960337 | MS.gene56949:CDS |
| GGCATCTGAAGCAAGACTTG+TGG | 0.661683 | 8.1:+18962848 | None:intergenic |
| TGCTTCAGGTGCACACATGG+AGG | 0.682276 | 8.1:-18960366 | MS.gene56949:CDS |
| ACAGGTCCAAGCATATAACA+AGG | 0.699921 | 8.1:-18961500 | MS.gene56949:intron |
| TGAAAAGAAAGTCTACTGGG+TGG | 0.706628 | 8.1:-18962899 | MS.gene56949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGTATATTTCAATTTA+GGG | + | chr8.1:18962331-18962350 | None:intergenic | 10.0% |
| !!! | TTTTATGTATATTTCAATTT+AGG | + | chr8.1:18962332-18962351 | None:intergenic | 10.0% |
| !! | AATATTAAGTAAAGAATACA+TGG | + | chr8.1:18962049-18962068 | None:intergenic | 15.0% |
| !! | AATCAAATTTAAATTTACTG+AGG | + | chr8.1:18961228-18961247 | None:intergenic | 15.0% |
| !! | TAATTTCAATTACATATGAT+TGG | + | chr8.1:18961278-18961297 | None:intergenic | 15.0% |
| !! | TACACTTTAAATGAAATTAA+TGG | - | chr8.1:18961899-18961918 | MS.gene56949:intron | 15.0% |
| !! | TTCAGAAATCTTTATAAATA+TGG | - | chr8.1:18960407-18960426 | MS.gene56949:intron | 15.0% |
| !!! | AAAATATTTTGACATGAAAT+TGG | - | chr8.1:18961112-18961131 | MS.gene56949:intron | 15.0% |
| !!! | AAGTTGATAATAATCTAAAA+GGG | + | chr8.1:18960436-18960455 | None:intergenic | 15.0% |
| !!! | ATATAATATACCTTTTCAAT+TGG | + | chr8.1:18961767-18961786 | None:intergenic | 15.0% |
| !!! | TACTTTTTATTTTGGATATA+TGG | - | chr8.1:18960463-18960482 | MS.gene56949:intron | 15.0% |
| !!! | TATAATATACCTTTTCAATT+GGG | + | chr8.1:18961766-18961785 | None:intergenic | 15.0% |
| !! | AAACAGAACTATAAATTGAA+GGG | - | chr8.1:18962137-18962156 | MS.gene56949:intron | 20.0% |
| !! | ACATAATTAAGTGTAATCAT+AGG | - | chr8.1:18962610-18962629 | MS.gene56949:intron | 20.0% |
| !! | AGTTAGTATTTAATTAACCA+AGG | - | chr8.1:18962408-18962427 | MS.gene56949:intron | 20.0% |
| !! | GTTAGTATTTAATTAACCAA+GGG | - | chr8.1:18962409-18962428 | MS.gene56949:intron | 20.0% |
| !! | TCACATTATATGAATGATAT+TGG | + | chr8.1:18960538-18960557 | None:intergenic | 20.0% |
| !! | TTTAGTAAACTTTACTGATA+GGG | - | chr8.1:18961802-18961821 | MS.gene56949:CDS | 20.0% |
| !!! | AATTTTTTTATTTACTCCCT+TGG | + | chr8.1:18962428-18962447 | None:intergenic | 20.0% |
| !!! | CAAGTTGATAATAATCTAAA+AGG | + | chr8.1:18960437-18960456 | None:intergenic | 20.0% |
| !!! | CAATATTTTATAAAGAGGAT+AGG | + | chr8.1:18960852-18960871 | None:intergenic | 20.0% |
| !!! | CTGTTACTTAGATATAATAT+GGG | + | chr8.1:18962462-18962481 | None:intergenic | 20.0% |
| !!! | CTTTTAGATTATTATCAACT+TGG | - | chr8.1:18960435-18960454 | MS.gene56949:intron | 20.0% |
| !!! | GGTAACAATATTTTATAAAG+AGG | + | chr8.1:18960857-18960876 | None:intergenic | 20.0% |
| !!! | TGGTTCTTTACTTTTTATTT+TGG | - | chr8.1:18960455-18960474 | MS.gene56949:intron | 20.0% |
| ! | AAAAAAAAAAGAAGATGACG+AGG | + | chr8.1:18961962-18961981 | None:intergenic | 25.0% |
| ! | AAAAATCAAATCGATTGAAC+CGG | - | chr8.1:18960604-18960623 | MS.gene56949:intron | 25.0% |
| ! | AATACATGTAATCAATGCAT+TGG | - | chr8.1:18962221-18962240 | MS.gene56949:intron | 25.0% |
| ! | AGATCTAACCATATATTCAT+TGG | - | chr8.1:18962743-18962762 | MS.gene56949:intron | 25.0% |
| ! | ATAGATATAAAGCAGATGAA+AGG | + | chr8.1:18961542-18961561 | None:intergenic | 25.0% |
| ! | ATCCTTAAATGTTAACATCA+TGG | - | chr8.1:18961876-18961895 | MS.gene56949:intron | 25.0% |
| ! | ATGAATATATGGTTAGATCT+AGG | + | chr8.1:18962743-18962762 | None:intergenic | 25.0% |
| ! | CCATATTATATCTAAGTAAC+AGG | - | chr8.1:18962460-18962479 | MS.gene56949:intron | 25.0% |
| ! | CTAGTAACTAATAATGTAAC+AGG | - | chr8.1:18961664-18961683 | MS.gene56949:intron | 25.0% |
| ! | CTTGTTCAATCTTATCAAAT+TGG | + | chr8.1:18962938-18962957 | None:intergenic | 25.0% |
| ! | CTTTAGTAAACTTTACTGAT+AGG | - | chr8.1:18961801-18961820 | MS.gene56949:CDS | 25.0% |
| ! | GAAACAGAACTATAAATTGA+AGG | - | chr8.1:18962136-18962155 | MS.gene56949:intron | 25.0% |
| ! | GAAATATACATAAAATGAGC+TGG | - | chr8.1:18962337-18962356 | MS.gene56949:intron | 25.0% |
| ! | GATCTAACCATATATTCATT+GGG | - | chr8.1:18962744-18962763 | MS.gene56949:intron | 25.0% |
| ! | TACCATGATGTTAACATTTA+AGG | + | chr8.1:18961881-18961900 | None:intergenic | 25.0% |
| ! | TACTAACTTCAAAAATTTGC+AGG | + | chr8.1:18962396-18962415 | None:intergenic | 25.0% |
| ! | TCATTCTTAATACACATGAT+AGG | - | chr8.1:18961620-18961639 | MS.gene56949:intron | 25.0% |
| ! | TTTCAAATTATTATCCGTGT+CGG | + | chr8.1:18962585-18962604 | None:intergenic | 25.0% |
| !! | AGTAACTATTGTTCTTTTGA+GGG | - | chr8.1:18961364-18961383 | MS.gene56949:intron | 25.0% |
| !! | CCTGTTACTTAGATATAATA+TGG | + | chr8.1:18962463-18962482 | None:intergenic | 25.0% |
| !! | TTAAAGAGTTGATCAAAATG+AGG | + | chr8.1:18961406-18961425 | None:intergenic | 25.0% |
| !!! | AGAGGCAAAATTACTTTTAA+AGG | + | chr8.1:18961835-18961854 | None:intergenic | 25.0% |
| !!! | GAGGCAAAATTACTTTTAAA+GGG | + | chr8.1:18961834-18961853 | None:intergenic | 25.0% |
| AAATCAATCGACAAACTGAA+AGG | + | chr8.1:18960633-18960652 | None:intergenic | 30.0% | |
| AACAGTATACCCAATTGAAA+AGG | - | chr8.1:18961754-18961773 | MS.gene56949:CDS | 30.0% | |
| ACCACAAATTGTCCAATATA+TGG | - | chr8.1:18962506-18962525 | MS.gene56949:intron | 30.0% | |
| ACCATATATTGGACAATTTG+TGG | + | chr8.1:18962510-18962529 | None:intergenic | 30.0% | |
| ATATATTGGACAATTTGTGG+TGG | + | chr8.1:18962507-18962526 | None:intergenic | 30.0% | |
| ATGTGAAAAGAAAGTCTACT+GGG | - | chr8.1:18960280-18960299 | MS.gene56949:CDS | 30.0% | |
| ATTAAGCTAGATTTGCCATT+AGG | - | chr8.1:18962368-18962387 | MS.gene56949:intron | 30.0% | |
| ATTGCAGTCTAATTGAACTA+GGG | - | chr8.1:18960665-18960684 | MS.gene56949:intron | 30.0% | |
| GAACAATCCCAATGAATATA+TGG | + | chr8.1:18962754-18962773 | None:intergenic | 30.0% | |
| GAACGATTTGAACCATATAT+TGG | + | chr8.1:18962521-18962540 | None:intergenic | 30.0% | |
| GCTTTATATCTATTGCTTGT+AGG | - | chr8.1:18961549-18961568 | MS.gene56949:intron | 30.0% | |
| GTATAAGGAAAAGAGGATTA+AGG | + | chr8.1:18961332-18961351 | None:intergenic | 30.0% | |
| GTTAAGCATTCTTTGCATTA+TGG | + | chr8.1:18960878-18960897 | None:intergenic | 30.0% | |
| TAATTGAACTAGGGTTGAAT+TGG | - | chr8.1:18960674-18960693 | MS.gene56949:intron | 30.0% | |
| TTATAAAGAGGATAGGAGAT+GGG | + | chr8.1:18960845-18960864 | None:intergenic | 30.0% | |
| TTTATAAAGAGGATAGGAGA+TGG | + | chr8.1:18960846-18960865 | None:intergenic | 30.0% | |
| TTTGCACATCTTTACTCTTT+AGG | - | chr8.1:18960973-18960992 | MS.gene56949:intron | 30.0% | |
| ! | AATCCTCTTTTCCTTATACT+TGG | - | chr8.1:18961333-18961352 | MS.gene56949:intron | 30.0% |
| ! | CTTCATATCTGGAATATGAT+AGG | - | chr8.1:18962695-18962714 | MS.gene56949:intron | 30.0% |
| ! | GAGTAACTATTGTTCTTTTG+AGG | - | chr8.1:18961363-18961382 | MS.gene56949:intron | 30.0% |
| ! | TATGGTGATGTCTACAATAA+AGG | + | chr8.1:18962884-18962903 | None:intergenic | 30.0% |
| ! | TTCAACCTTACTCATTTTAG+AGG | + | chr8.1:18961853-18961872 | None:intergenic | 30.0% |
| ! | TTGAAACCTTGTTATATGCT+TGG | + | chr8.1:18961691-18961710 | None:intergenic | 30.0% |
| !! | AGTTTGGACAAAAGTTTTGA+AGG | - | chr8.1:18961436-18961455 | MS.gene56949:CDS | 30.0% |
| !! | TTCTGAAATACTATGAAGCA+CGG | - | chr8.1:18962538-18962557 | MS.gene56949:intron | 30.0% |
| !!! | AAGGTTTCAAGATTTTTTGC+TGG | - | chr8.1:18961701-18961720 | MS.gene56949:intron | 30.0% |
| !!! | ATTGGGATTGTTCTTTTTTC+AGG | - | chr8.1:18962761-18962780 | MS.gene56949:intron | 30.0% |
| !!! | TTTTGCCTCTAAAATGAGTA+AGG | - | chr8.1:18961845-18961864 | MS.gene56949:intron | 30.0% |
| AAAAATTTGCAGGTGCCTAA+TGG | + | chr8.1:18962386-18962405 | None:intergenic | 35.0% | |
| AAAAGAAGATGACGAGGATA+AGG | + | chr8.1:18961956-18961975 | None:intergenic | 35.0% | |
| AATCAGTCCATCAAACTATG+TGG | - | chr8.1:18962845-18962864 | MS.gene56949:CDS | 35.0% | |
| ACATCTTTACTCTTTAGGCA+TGG | - | chr8.1:18960978-18960997 | MS.gene56949:intron | 35.0% | |
| ACTCAGATCTTCAAACAGAA+GGG | - | chr8.1:18962903-18962922 | MS.gene56949:CDS | 35.0% | |
| AGTTGAAAGATCTACTGATC+AGG | - | chr8.1:18961590-18961609 | MS.gene56949:intron | 35.0% | |
| ATAAGAGAGATTCTCAGTTG+TGG | + | chr8.1:18962026-18962045 | None:intergenic | 35.0% | |
| CATGTGAAAAGAAAGTCTAC+TGG | - | chr8.1:18960279-18960298 | MS.gene56949:CDS | 35.0% | |
| CATTGCAGTCTAATTGAACT+AGG | - | chr8.1:18960664-18960683 | MS.gene56949:intron | 35.0% | |
| CCAAAATAGTGGTTATGAGT+GGG | + | chr8.1:18961066-18961085 | None:intergenic | 35.0% | |
| GGAACTCAAGAAAAATGTGT+TGG | - | chr8.1:18961722-18961741 | MS.gene56949:intron | 35.0% | |
| GTAGAGAACAAGAAAATGCA+TGG | + | chr8.1:18960949-18960968 | None:intergenic | 35.0% | |
| GTGTATCTTCACATGTAGAA+AGG | + | chr8.1:18962077-18962096 | None:intergenic | 35.0% | |
| TACTCAGATCTTCAAACAGA+AGG | - | chr8.1:18962902-18962921 | MS.gene56949:CDS | 35.0% | |
| TCTGTTTGAAGATCTGAGTA+TGG | + | chr8.1:18962902-18962921 | None:intergenic | 35.0% | |
| ! | CACTCATAACCACTATTTTG+GGG | - | chr8.1:18961065-18961084 | MS.gene56949:intron | 35.0% |
| ! | CCACTCATAACCACTATTTT+GGG | - | chr8.1:18961064-18961083 | MS.gene56949:intron | 35.0% |
| !! | GATCAACTCTTTAAGATGAC+TGG | - | chr8.1:18961412-18961431 | MS.gene56949:intron | 35.0% |
| ACAGGTCCAAGCATATAACA+AGG | - | chr8.1:18961682-18961701 | MS.gene56949:intron | 40.0% | |
| AGGGTTGAATTGGAGTTAGT+TGG | - | chr8.1:18960684-18960703 | MS.gene56949:intron | 40.0% | |
| CCCAAAATAGTGGTTATGAG+TGG | + | chr8.1:18961067-18961086 | None:intergenic | 40.0% | |
| GCACCAAGTATAAGGAAAAG+AGG | + | chr8.1:18961339-18961358 | None:intergenic | 40.0% | |
| GGGTTGAATTGGAGTTAGTT+GGG | - | chr8.1:18960685-18960704 | MS.gene56949:intron | 40.0% | |
| TCATGTGCCACATAGTTTGA+TGG | + | chr8.1:18962855-18962874 | None:intergenic | 40.0% | |
| TCGACAAACTGAAAGGTTTC+CGG | + | chr8.1:18960626-18960645 | None:intergenic | 40.0% | |
| TCTCCGACTCATGATTCAAT+CGG | + | chr8.1:18960812-18960831 | None:intergenic | 40.0% | |
| TGAAAAGAAAGTCTACTGGG+TGG | - | chr8.1:18960283-18960302 | MS.gene56949:CDS | 40.0% | |
| TGACCGATTGAATCATGAGT+CGG | - | chr8.1:18960806-18960825 | MS.gene56949:intron | 40.0% | |
| TTGCTGAAAACGACATCTAG+AGG | + | chr8.1:18960907-18960926 | None:intergenic | 40.0% | |
| ! | ATGCTTTAGACTTCAGTGCA+TGG | - | chr8.1:18960494-18960513 | MS.gene56949:intron | 40.0% |
| ! | CCCACTCATAACCACTATTT+TGG | - | chr8.1:18961063-18961082 | MS.gene56949:intron | 40.0% |
| ! | CTTACCATAAGACTTGCTTC+AGG | - | chr8.1:18962802-18962821 | MS.gene56949:intron | 40.0% |
| !! | CTTTAAGATGACTGGCAGTT+TGG | - | chr8.1:18961420-18961439 | MS.gene56949:intron | 40.0% |
| !! | TCATAACCACTATTTTGGGG+CGG | - | chr8.1:18961068-18961087 | MS.gene56949:intron | 40.0% |
| !!! | TTTTTTCAGGTAGCTGCTGA+TGG | - | chr8.1:18962774-18962793 | MS.gene56949:intron | 40.0% |
| ACTCAGCTGCACCAAGTATA+AGG | + | chr8.1:18961347-18961366 | None:intergenic | 45.0% | |
| ATACTATGAAGCACGGACAC+CGG | - | chr8.1:18962545-18962564 | MS.gene56949:intron | 45.0% | |
| ATTTGTGGTGGTATGAGCTG+TGG | + | chr8.1:18962495-18962514 | None:intergenic | 45.0% | |
| GAGTGTTCGTGCTTCATATC+TGG | - | chr8.1:18962684-18962703 | MS.gene56949:intron | 45.0% | |
| GATATGCTTAAAGAGTCCCC+CGG | - | chr8.1:18962287-18962306 | MS.gene56949:intron | 45.0% | |
| TATGAAGCACGAACACTCCT+CGG | + | chr8.1:18962682-18962701 | None:intergenic | 45.0% | |
| TCTTGTTAACGAGTGCTTCC+GGG | + | chr8.1:18962308-18962327 | None:intergenic | 45.0% | |
| TGCACCTGAAGCAAGTCTTA+TGG | + | chr8.1:18962809-18962828 | None:intergenic | 45.0% | |
| TTCAGATGCCACCATTGCAA+GGG | - | chr8.1:18960347-18960366 | MS.gene56949:CDS | 45.0% | |
| ! | GTCTTGTTAACGAGTGCTTC+CGG | + | chr8.1:18962309-18962328 | None:intergenic | 45.0% |
| !! | ATAGTCCTTAAAGAGTGCCC+CGG | + | chr8.1:18962181-18962200 | None:intergenic | 45.0% |
| !! | AAAGAAATAAATAAATAAAA+AGG | + | chr8.1:18960765-18960784 | None:intergenic | 5.0% |
| AAATGTTAACGAGTGCCCCC+GGG | - | chr8.1:18962160-18962179 | MS.gene56949:intron | 50.0% | |
| ACACTACCGCCCCAAAATAG+TGG | + | chr8.1:18961077-18961096 | None:intergenic | 50.0% | |
| ACTTGCTTCAGGTGCACACA+TGG | - | chr8.1:18962813-18962832 | MS.gene56949:intron | 50.0% | |
| CTTCAGATGCCACCATTGCA+AGG | - | chr8.1:18960346-18960365 | MS.gene56949:CDS | 50.0% | |
| CTTGTTAACGAGTGCTTCCG+GGG | + | chr8.1:18962307-18962326 | None:intergenic | 50.0% | |
| GAAATGTTAACGAGTGCCCC+CGG | - | chr8.1:18962159-18962178 | MS.gene56949:intron | 50.0% | |
| TTGTTAACGAGTGCTTCCGG+GGG | + | chr8.1:18962306-18962325 | None:intergenic | 50.0% | |
| ! | GGCATCTGAAGCAAGACTTG+TGG | + | chr8.1:18960337-18960356 | None:intergenic | 50.0% |
| !! | TAGTCCTTAAAGAGTGCCCC+GGG | + | chr8.1:18962180-18962199 | None:intergenic | 50.0% |
| AATGTTAACGAGTGCCCCCG+GGG | - | chr8.1:18962161-18962180 | MS.gene56949:intron | 55.0% | |
| GCACGAACACTCCTCGGATT+AGG | + | chr8.1:18962676-18962695 | None:intergenic | 55.0% | |
| TGCTTCAGGTGCACACATGG+AGG | - | chr8.1:18962816-18962835 | MS.gene56949:intron | 55.0% | |
| !! | AGTCCTTAAAGAGTGCCCCG+GGG | + | chr8.1:18962179-18962198 | None:intergenic | 55.0% |
| ACACGACACGGACACCGACA+CGG | - | chr8.1:18962568-18962587 | MS.gene56949:intron | 60.0% | |
| CCTTGAGCGTGCCCTTGCAA+TGG | + | chr8.1:18960361-18960380 | None:intergenic | 60.0% | |
| GGATTAGGCGTGTCCGGTGT+CGG | + | chr8.1:18962661-18962680 | None:intergenic | 60.0% | |
| TGAGCGTGCCCTTGCAATGG+TGG | + | chr8.1:18960358-18960377 | None:intergenic | 60.0% | |
| ! | CCATTGCAAGGGCACGCTCA+AGG | - | chr8.1:18960358-18960377 | MS.gene56949:CDS | 60.0% |
| ! | CTCCTCGGATTAGGCGTGTC+CGG | + | chr8.1:18962667-18962686 | None:intergenic | 60.0% |
| !! | GTCCTTAAAGAGTGCCCCGG+GGG | + | chr8.1:18962178-18962197 | None:intergenic | 60.0% |
| CACCGGACACGCCTAATCCG+AGG | - | chr8.1:18962662-18962681 | MS.gene56949:intron | 65.0% | |
| CACGGACACCGGACACGACA+CGG | - | chr8.1:18962556-18962575 | MS.gene56949:intron | 65.0% | |
| CAGCGACGCGTATCCGACAC+CGG | - | chr8.1:18962645-18962664 | MS.gene56949:intron | 65.0% | |
| ! | GTCGGTGTCCGTGTCGTGTC+CGG | + | chr8.1:18962567-18962586 | None:intergenic | 65.0% |
| ! | TGCCCCCGGGGCACTCTTTA+AGG | - | chr8.1:18962173-18962192 | MS.gene56949:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 18960242 | 18962962 | 18960242 | ID=MS.gene56949 |
| chr8.1 | mRNA | 18960242 | 18962962 | 18960242 | ID=MS.gene56949.t1;Parent=MS.gene56949 |
| chr8.1 | exon | 18962825 | 18962962 | 18962825 | ID=MS.gene56949.t1.exon1;Parent=MS.gene56949.t1 |
| chr8.1 | CDS | 18962825 | 18962962 | 18962825 | ID=cds.MS.gene56949.t1;Parent=MS.gene56949.t1 |
| chr8.1 | exon | 18961747 | 18961843 | 18961747 | ID=MS.gene56949.t1.exon2;Parent=MS.gene56949.t1 |
| chr8.1 | CDS | 18961747 | 18961843 | 18961747 | ID=cds.MS.gene56949.t1;Parent=MS.gene56949.t1 |
| chr8.1 | exon | 18961593 | 18961633 | 18961593 | ID=MS.gene56949.t1.exon3;Parent=MS.gene56949.t1 |
| chr8.1 | CDS | 18961593 | 18961633 | 18961593 | ID=cds.MS.gene56949.t1;Parent=MS.gene56949.t1 |
| chr8.1 | exon | 18961429 | 18961518 | 18961429 | ID=MS.gene56949.t1.exon4;Parent=MS.gene56949.t1 |
| chr8.1 | CDS | 18961429 | 18961518 | 18961429 | ID=cds.MS.gene56949.t1;Parent=MS.gene56949.t1 |
| chr8.1 | exon | 18960242 | 18960421 | 18960242 | ID=MS.gene56949.t1.exon5;Parent=MS.gene56949.t1 |
| chr8.1 | CDS | 18960242 | 18960421 | 18960242 | ID=cds.MS.gene56949.t1;Parent=MS.gene56949.t1 |
| Gene Sequence |
| Protein sequence |
