Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57201.t1 | XP_024632961.1 | 83.5 | 772 | 89 | 5 | 1 | 734 | 1 | 772 | 0.00E+00 | 1278.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57201.t1 | Q9SZL8 | 26.5 | 635 | 386 | 13 | 32 | 652 | 70 | 637 | 1.6e-58 | 229.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57201.t1 | D3YBB9 | 76.2 | 752 | 151 | 4 | 1 | 733 | 49 | 791 | 0.0e+00 | 1154.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene57201.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57201.t1 | MTR_0558s0020 | 86.824 | 296 | 38 | 1 | 1 | 295 | 1 | 296 | 0.0 | 538 |
MS.gene57201.t1 | MTR_1g083640 | 82.394 | 284 | 34 | 1 | 1 | 268 | 1 | 284 | 8.62e-169 | 487 |
MS.gene57201.t1 | MTR_8g446020 | 73.220 | 295 | 40 | 1 | 1 | 295 | 1 | 256 | 2.76e-148 | 434 |
MS.gene57201.t1 | MTR_2g014100 | 81.633 | 245 | 36 | 1 | 1 | 236 | 1 | 245 | 3.75e-139 | 410 |
MS.gene57201.t1 | MTR_6g090505 | 82.700 | 237 | 41 | 0 | 65 | 301 | 1 | 237 | 3.39e-138 | 412 |
MS.gene57201.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 384 | 483 | 230 | 306 | 7.09e-34 | 134 |
MS.gene57201.t1 | MTR_6g090505 | 80.488 | 41 | 8 | 0 | 562 | 602 | 322 | 362 | 7.98e-13 | 71.2 |
MS.gene57201.t1 | MTR_0337s0040 | 71.538 | 260 | 34 | 2 | 1 | 259 | 1 | 221 | 2.68e-120 | 360 |
MS.gene57201.t1 | MTR_3g008240 | 83.744 | 203 | 32 | 1 | 1 | 202 | 1 | 203 | 1.97e-115 | 347 |
MS.gene57201.t1 | MTR_4g040430 | 82.178 | 202 | 32 | 1 | 1 | 202 | 1 | 198 | 1.06e-112 | 340 |
MS.gene57201.t1 | MTR_0337s0060 | 59.000 | 300 | 27 | 3 | 435 | 734 | 21 | 224 | 1.89e-104 | 320 |
MS.gene57201.t1 | MTR_5g071590 | 72.778 | 180 | 36 | 2 | 1 | 167 | 1 | 180 | 2.27e-86 | 271 |
MS.gene57201.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 91 | 232 | 3 | 144 | 1.91e-84 | 265 |
MS.gene57201.t1 | MTR_0019s0290 | 80.921 | 152 | 29 | 0 | 82 | 233 | 9 | 160 | 5.76e-82 | 258 |
MS.gene57201.t1 | MTR_3g028680 | 83.846 | 130 | 21 | 0 | 605 | 734 | 1 | 130 | 1.33e-69 | 227 |
MS.gene57201.t1 | MTR_4g133495 | 60.656 | 183 | 46 | 2 | 555 | 734 | 80 | 239 | 2.03e-65 | 219 |
MS.gene57201.t1 | MTR_4g133340 | 60.656 | 183 | 46 | 2 | 555 | 734 | 80 | 239 | 2.03e-65 | 219 |
MS.gene57201.t1 | MTR_2g067090 | 79.528 | 127 | 26 | 0 | 608 | 734 | 99 | 225 | 7.89e-62 | 209 |
MS.gene57201.t1 | MTR_1281s0010 | 80.734 | 109 | 21 | 0 | 19 | 127 | 1 | 109 | 1.77e-56 | 188 |
MS.gene57201.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 3.15e-40 | 151 |
MS.gene57201.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 9.63e-32 | 132 |
MS.gene57201.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.33e-31 | 122 |
MS.gene57201.t1 | MTR_1g070355 | 27.888 | 251 | 162 | 4 | 41 | 291 | 80 | 311 | 1.04e-18 | 90.9 |
MS.gene57201.t1 | MTR_4g035820 | 23.103 | 290 | 190 | 7 | 17 | 299 | 61 | 324 | 1.85e-14 | 77.8 |
MS.gene57201.t1 | MTR_0402s0040 | 24.865 | 185 | 120 | 4 | 49 | 233 | 40 | 205 | 3.38e-14 | 76.3 |
MS.gene57201.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 2.00e-13 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57201.t1 | AT4G38180 | 26.457 | 635 | 386 | 13 | 32 | 652 | 70 | 637 | 1.14e-63 | 228 |
MS.gene57201.t1 | AT4G15090 | 25.926 | 675 | 402 | 16 | 50 | 705 | 66 | 661 | 2.01e-58 | 213 |
MS.gene57201.t1 | AT4G15090 | 25.926 | 675 | 402 | 16 | 50 | 705 | 66 | 661 | 2.01e-58 | 213 |
MS.gene57201.t1 | AT4G15090 | 25.926 | 675 | 402 | 16 | 50 | 705 | 66 | 661 | 2.01e-58 | 213 |
MS.gene57201.t1 | AT4G15090 | 25.926 | 675 | 402 | 16 | 50 | 705 | 66 | 661 | 2.01e-58 | 213 |
MS.gene57201.t1 | AT4G15090 | 25.926 | 675 | 402 | 16 | 50 | 705 | 66 | 661 | 2.01e-58 | 213 |
MS.gene57201.t1 | AT2G27110 | 25.168 | 596 | 361 | 15 | 127 | 706 | 108 | 634 | 1.99e-48 | 184 |
MS.gene57201.t1 | AT2G27110 | 25.168 | 596 | 361 | 15 | 127 | 706 | 108 | 634 | 1.99e-48 | 184 |
MS.gene57201.t1 | AT3G06250 | 24.367 | 632 | 344 | 16 | 34 | 648 | 189 | 703 | 1.44e-47 | 181 |
MS.gene57201.t1 | AT3G06250 | 24.367 | 632 | 344 | 16 | 34 | 648 | 189 | 703 | 1.44e-47 | 181 |
MS.gene57201.t1 | AT3G06250 | 24.367 | 632 | 344 | 16 | 34 | 648 | 189 | 703 | 1.44e-47 | 181 |
MS.gene57201.t1 | AT1G76320 | 24.260 | 676 | 405 | 19 | 50 | 707 | 12 | 598 | 1.74e-47 | 179 |
MS.gene57201.t1 | AT2G27110 | 25.984 | 508 | 308 | 11 | 213 | 706 | 36 | 489 | 2.08e-47 | 180 |
MS.gene57201.t1 | AT1G76320 | 24.260 | 676 | 405 | 19 | 50 | 707 | 12 | 598 | 5.56e-47 | 179 |
MS.gene57201.t1 | AT1G76320 | 24.260 | 676 | 405 | 19 | 50 | 707 | 12 | 598 | 6.28e-47 | 179 |
MS.gene57201.t1 | AT1G76320 | 24.260 | 676 | 405 | 19 | 50 | 707 | 12 | 598 | 6.28e-47 | 179 |
MS.gene57201.t1 | AT3G22170 | 23.615 | 686 | 405 | 18 | 34 | 695 | 69 | 659 | 1.49e-46 | 179 |
MS.gene57201.t1 | AT3G22170 | 23.615 | 686 | 405 | 18 | 34 | 695 | 69 | 659 | 1.49e-46 | 179 |
MS.gene57201.t1 | AT5G18960 | 23.758 | 644 | 356 | 19 | 24 | 648 | 200 | 727 | 1.24e-42 | 166 |
MS.gene57201.t1 | AT5G18960 | 23.758 | 644 | 356 | 19 | 24 | 648 | 200 | 727 | 1.24e-42 | 166 |
MS.gene57201.t1 | AT4G38170 | 26.279 | 430 | 248 | 14 | 235 | 649 | 24 | 399 | 5.82e-42 | 161 |
MS.gene57201.t1 | AT2G32250 | 23.498 | 749 | 420 | 24 | 1 | 730 | 8 | 622 | 5.08e-40 | 158 |
MS.gene57201.t1 | AT2G32250 | 23.498 | 749 | 420 | 24 | 1 | 730 | 8 | 622 | 6.85e-40 | 158 |
MS.gene57201.t1 | AT2G32250 | 23.498 | 749 | 420 | 24 | 1 | 730 | 8 | 622 | 6.85e-40 | 158 |
MS.gene57201.t1 | AT2G32250 | 23.498 | 749 | 420 | 24 | 1 | 730 | 8 | 622 | 6.85e-40 | 158 |
MS.gene57201.t1 | AT2G32250 | 23.364 | 749 | 421 | 23 | 1 | 730 | 8 | 622 | 9.23e-40 | 157 |
MS.gene57201.t1 | AT2G32250 | 23.364 | 749 | 421 | 23 | 1 | 730 | 8 | 622 | 9.23e-40 | 157 |
MS.gene57201.t1 | AT2G32250 | 23.554 | 709 | 393 | 21 | 41 | 730 | 3 | 581 | 2.63e-39 | 156 |
MS.gene57201.t1 | AT2G32250 | 23.554 | 709 | 393 | 21 | 41 | 730 | 3 | 581 | 2.70e-39 | 156 |
MS.gene57201.t1 | AT1G10240 | 25.361 | 623 | 360 | 23 | 49 | 646 | 62 | 604 | 4.36e-39 | 155 |
MS.gene57201.t1 | AT1G10240 | 25.361 | 623 | 360 | 23 | 49 | 646 | 62 | 604 | 4.36e-39 | 155 |
MS.gene57201.t1 | AT5G28530 | 24.149 | 646 | 366 | 20 | 40 | 647 | 60 | 619 | 5.65e-39 | 154 |
MS.gene57201.t1 | AT5G28530 | 23.994 | 646 | 363 | 21 | 40 | 647 | 60 | 615 | 4.02e-38 | 152 |
MS.gene57201.t1 | AT5G28530 | 23.994 | 646 | 363 | 21 | 40 | 647 | 60 | 615 | 4.02e-38 | 152 |
MS.gene57201.t1 | AT4G19990 | 23.555 | 692 | 402 | 18 | 41 | 708 | 27 | 615 | 1.16e-37 | 151 |
MS.gene57201.t1 | AT4G19990 | 23.555 | 692 | 402 | 18 | 41 | 708 | 27 | 615 | 1.16e-37 | 151 |
MS.gene57201.t1 | AT4G19990 | 23.555 | 692 | 402 | 18 | 41 | 708 | 27 | 615 | 1.26e-37 | 151 |
MS.gene57201.t1 | AT4G19990 | 25.641 | 507 | 306 | 11 | 219 | 708 | 106 | 558 | 3.64e-36 | 146 |
MS.gene57201.t1 | AT1G80010 | 23.391 | 637 | 384 | 22 | 41 | 649 | 101 | 661 | 2.81e-33 | 137 |
MS.gene57201.t1 | AT1G52520 | 22.135 | 637 | 379 | 18 | 41 | 649 | 91 | 638 | 1.27e-31 | 132 |
MS.gene57201.t1 | AT4G19990 | 23.620 | 453 | 271 | 12 | 41 | 471 | 41 | 440 | 2.88e-25 | 112 |
MS.gene57201.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 578 | 708 | 509 | 629 | 2.44e-12 | 71.2 |
MS.gene57201.t1 | AT4G19990 | 23.620 | 453 | 271 | 12 | 41 | 471 | 27 | 426 | 5.07e-25 | 111 |
MS.gene57201.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 578 | 708 | 495 | 615 | 2.35e-12 | 71.2 |
MS.gene57201.t1 | AT4G19990 | 23.620 | 453 | 271 | 12 | 41 | 471 | 27 | 426 | 5.07e-25 | 111 |
MS.gene57201.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 578 | 708 | 495 | 615 | 2.35e-12 | 71.2 |
Find 109 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.3:+8864375 | MS.gene57201:CDS |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.3:+8864642 | MS.gene57201:CDS |
TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 5.3:+8864094 | MS.gene57201:intron |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.3:+8863571 | MS.gene57201:CDS |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.3:+8864127 | MS.gene57201:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5.3:-8864221 | None:intergenic |
GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 5.3:+8864936 | MS.gene57201:CDS |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.3:+8864416 | MS.gene57201:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5.3:+8865353 | MS.gene57201:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.339668 | 5.3:-8865229 | None:intergenic |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5.3:-8864239 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.3:-8863621 | None:intergenic |
GAGGGATAATCATGCTGATT+TGG | 0.346844 | 5.3:+8864675 | MS.gene57201:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5.3:+8864516 | MS.gene57201:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5.3:+8865345 | MS.gene57201:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.3:+8863628 | MS.gene57201:CDS |
TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 5.3:+8864684 | MS.gene57201:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.3:+8863620 | MS.gene57201:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5.3:+8864515 | MS.gene57201:CDS |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5.3:-8863091 | None:intergenic |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5.3:+8865378 | MS.gene57201:CDS |
CCATGATTCTTTATCACTAA+AGG | 0.406174 | 5.3:-8862852 | None:intergenic |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5.3:+8862862 | MS.gene57201:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5.3:+8865061 | MS.gene57201:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5.3:-8864984 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5.3:+8862933 | MS.gene57201:CDS |
GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 5.3:+8865019 | MS.gene57201:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5.3:-8864985 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.3:+8863268 | MS.gene57201:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.3:+8863150 | MS.gene57201:CDS |
TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5.3:+8863182 | MS.gene57201:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5.3:-8864232 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.3:+8863133 | MS.gene57201:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5.3:-8865162 | None:intergenic |
CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5.3:+8863016 | MS.gene57201:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.3:+8863298 | MS.gene57201:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5.3:+8862787 | MS.gene57201:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.3:+8864306 | MS.gene57201:CDS |
CTCCTCAAAATAGTATTTGA+AGG | 0.453936 | 5.3:-8864818 | None:intergenic |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5.3:+8865062 | MS.gene57201:CDS |
GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 5.3:+8864470 | MS.gene57201:CDS |
CGCAAACACGTGTAGAAAGC+TGG | 0.465682 | 5.3:-8865296 | None:intergenic |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.3:+8862982 | MS.gene57201:CDS |
TTTGAGGAGGACACAACAAA+AGG | 0.469432 | 5.3:+8864832 | MS.gene57201:CDS |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.3:-8863127 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 5.3:+8862920 | MS.gene57201:CDS |
TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 5.3:+8863411 | MS.gene57201:CDS |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.3:+8862976 | MS.gene57201:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.3:-8864107 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5.3:+8864417 | MS.gene57201:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.3:+8863424 | MS.gene57201:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.3:+8864656 | MS.gene57201:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5.3:-8864736 | None:intergenic |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5.3:-8863516 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.3:+8864503 | MS.gene57201:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5.3:+8864998 | MS.gene57201:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.3:-8863382 | None:intergenic |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5.3:+8864521 | MS.gene57201:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5.3:-8864978 | None:intergenic |
CAAAATAGTATTTGAAGGAA+AGG | 0.519540 | 5.3:-8864813 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.3:-8864624 | None:intergenic |
AAATGCTCTGCTTTATGTAA+TGG | 0.525118 | 5.3:-8863226 | None:intergenic |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5.3:+8864999 | MS.gene57201:CDS |
TTGAGGAGGACACAACAAAA+GGG | 0.529908 | 5.3:+8864833 | MS.gene57201:CDS |
TGTCTATAAGATATATAGGT+GGG | 0.532209 | 5.3:+8863186 | MS.gene57201:CDS |
CTGAAATCTACCATGAATGT+TGG | 0.534154 | 5.3:+8865219 | MS.gene57201:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5.3:+8863027 | MS.gene57201:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.3:-8864619 | None:intergenic |
CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 5.3:+8862852 | MS.gene57201:CDS |
TATATCTTATAGACATTCAA+CGG | 0.544310 | 5.3:-8863178 | None:intergenic |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.3:+8863028 | MS.gene57201:CDS |
GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 5.3:+8863330 | MS.gene57201:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.3:-8864252 | None:intergenic |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.3:+8863478 | MS.gene57201:CDS |
GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 5.3:+8863351 | MS.gene57201:CDS |
TGTAAATTCAGTTATTGATG+CGG | 0.568873 | 5.3:+8862811 | MS.gene57201:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5.3:+8865305 | MS.gene57201:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5.3:-8864737 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5.3:-8864758 | None:intergenic |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5.3:+8865346 | MS.gene57201:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 5.3:+8864238 | MS.gene57201:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5.3:+8865341 | MS.gene57201:CDS |
GAATGAATTCAAGGAATGAG+TGG | 0.593229 | 5.3:-8866054 | None:intergenic |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5.3:-8865421 | None:intergenic |
TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 5.3:+8864968 | MS.gene57201:CDS |
GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 5.3:+8863343 | MS.gene57201:CDS |
GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 5.3:+8863417 | MS.gene57201:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5.3:+8865308 | MS.gene57201:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5.3:+8864734 | MS.gene57201:CDS |
CGATGTTGACTATAATGAGA+GGG | 0.609157 | 5.3:+8864915 | MS.gene57201:CDS |
GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 5.3:+8863420 | MS.gene57201:CDS |
ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 5.3:+8862776 | MS.gene57201:CDS |
AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 5.3:-8864472 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5.3:-8863076 | None:intergenic |
GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 5.3:+8863346 | MS.gene57201:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5.3:-8864983 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.3:+8864307 | MS.gene57201:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 5.3:+8863331 | MS.gene57201:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.3:+8864657 | MS.gene57201:CDS |
ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5.3:+8863185 | MS.gene57201:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5.3:-8865204 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5.3:-8864778 | None:intergenic |
TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 5.3:+8863337 | MS.gene57201:CDS |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5.3:+8865330 | MS.gene57201:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5.3:-8865080 | None:intergenic |
ACGATGTTGACTATAATGAG+AGG | 0.664782 | 5.3:+8864914 | MS.gene57201:CDS |
TCAAACCATATACACAGACC+AGG | 0.671057 | 5.3:+8864234 | MS.gene57201:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5.3:+8865063 | MS.gene57201:CDS |
GTCAATTCTGATGTAATGCG+CGG | 0.734639 | 5.3:+8866000 | MS.gene57201:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGAATATTATATTATCTTC+TGG | + | chr5.3:8865756-8865775 | MS.gene57201:intron | 15.0% |
!!! | ATGATGAAAAATTGTTTTAA+TGG | + | chr5.3:8864445-8864464 | MS.gene57201:CDS | 15.0% |
!!! | GTTTTTTTTTGTTATAAGTT+AGG | + | chr5.3:8865634-8865653 | MS.gene57201:intron | 15.0% |
!! | AAACCAAATTAACAATCTAA+TGG | - | chr5.3:8865843-8865862 | None:intergenic | 20.0% |
!! | AAACCATAATTATGGTTTAA+TGG | - | chr5.3:8865886-8865905 | None:intergenic | 20.0% |
!! | AAACCATTAAACCATAATTA+TGG | + | chr5.3:8865880-8865899 | MS.gene57201:intron | 20.0% |
!! | AAACCATTAGATTGTTAATT+TGG | + | chr5.3:8865837-8865856 | MS.gene57201:intron | 20.0% |
!! | AATTCTTGATTGTTATGTAT+TGG | + | chr5.3:8865732-8865751 | MS.gene57201:intron | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr5.3:8862976-8862995 | MS.gene57201:CDS | 20.0% |
!! | TATATCTTATAGACATTCAA+CGG | - | chr5.3:8863181-8863200 | None:intergenic | 20.0% |
!! | TCTTAACTAAACCATAATTA+TGG | - | chr5.3:8865894-8865913 | None:intergenic | 20.0% |
!! | TGAATGTCTATAAGATATAT+AGG | + | chr5.3:8863182-8863201 | MS.gene57201:CDS | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr5.3:8862920-8862939 | MS.gene57201:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr5.3:8863803-8863822 | MS.gene57201:intron | 20.0% |
!!! | TGAAAAATTGTTTTAATGGA+AGG | + | chr5.3:8864449-8864468 | MS.gene57201:CDS | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr5.3:8863775-8863794 | MS.gene57201:intron | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr5.3:8864283-8864302 | None:intergenic | 25.0% |
! | AAAGTGATTATGAAAAAGCT+AGG | + | chr5.3:8865532-8865551 | MS.gene57201:intron | 25.0% |
! | AAGTGATTATGAAAAAGCTA+GGG | + | chr5.3:8865533-8865552 | MS.gene57201:intron | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr5.3:8862982-8863001 | MS.gene57201:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr5.3:8863620-8863639 | MS.gene57201:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr5.3:8863646-8863665 | None:intergenic | 25.0% |
! | ATGTCTATAAGATATATAGG+TGG | + | chr5.3:8863185-8863204 | MS.gene57201:CDS | 25.0% |
! | CAAAATAGTATTTGAAGGAA+AGG | - | chr5.3:8864816-8864835 | None:intergenic | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr5.3:8864642-8864661 | MS.gene57201:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr5.3:8863693-8863712 | MS.gene57201:intron | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr5.3:8864781-8864800 | None:intergenic | 25.0% |
! | TGTAAATTCAGTTATTGATG+CGG | + | chr5.3:8862811-8862830 | MS.gene57201:CDS | 25.0% |
! | TGTCTATAAGATATATAGGT+GGG | + | chr5.3:8863186-8863205 | MS.gene57201:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr5.3:8864375-8864394 | MS.gene57201:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5.3:8863795-8863814 | MS.gene57201:intron | 25.0% |
!! | ATTTTCAATTCTGAGTTAAG+TGG | + | chr5.3:8865913-8865932 | MS.gene57201:intron | 25.0% |
!! | CAAAGTTTTTACAATTGAGA+AGG | + | chr5.3:8864876-8864895 | MS.gene57201:CDS | 25.0% |
!! | CTATACATTTTCACATTTGT+TGG | + | chr5.3:8865782-8865801 | MS.gene57201:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5.3:8864065-8864084 | MS.gene57201:intron | 25.0% |
!! | TTCCTTCAAATACTATTTTG+AGG | + | chr5.3:8864816-8864835 | MS.gene57201:CDS | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | + | chr5.3:8863533-8863552 | MS.gene57201:CDS | 25.0% |
!!! | AGACATAGCTAGTATTTTTT+GGG | + | chr5.3:8863534-8863553 | MS.gene57201:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5.3:8862972-8862991 | None:intergenic | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5.3:8863298-8863317 | MS.gene57201:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr5.3:8863866-8863885 | None:intergenic | 30.0% | |
AAATGCTCTGCTTTATGTAA+TGG | - | chr5.3:8863229-8863248 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.3:8863028-8863047 | MS.gene57201:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr5.3:8863628-8863647 | MS.gene57201:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | + | chr5.3:8865493-8865512 | MS.gene57201:intron | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr5.3:8864416-8864435 | MS.gene57201:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr5.3:8863331-8863350 | MS.gene57201:CDS | 30.0% | |
ATAAGTTAGGAAAGATGATG+AGG | + | chr5.3:8865647-8865666 | MS.gene57201:intron | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr5.3:8864417-8864436 | MS.gene57201:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr5.3:8864110-8864129 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | - | chr5.3:8864986-8865005 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr5.3:8863571-8863590 | MS.gene57201:CDS | 30.0% | |
CCATGATTCTTTATCACTAA+AGG | - | chr5.3:8862855-8862874 | None:intergenic | 30.0% | |
CCTTTAGTGATAAAGAATCA+TGG | + | chr5.3:8862852-8862871 | MS.gene57201:CDS | 30.0% | |
CTCCTCAAAATAGTATTTGA+AGG | - | chr5.3:8864821-8864840 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr5.3:8863732-8863751 | MS.gene57201:intron | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | + | chr5.3:8864331-8864350 | MS.gene57201:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr5.3:8864987-8865006 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr5.3:8863624-8863643 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr5.3:8863117-8863136 | MS.gene57201:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr5.3:8862862-8862881 | MS.gene57201:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr5.3:8864627-8864646 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.3:8863027-8863046 | MS.gene57201:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr5.3:8863499-8863518 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr5.3:8864761-8864780 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr5.3:8865504-8865523 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr5.3:8863385-8863404 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCTCAA+TGG | + | chr5.3:8864024-8864043 | MS.gene57201:intron | 30.0% | |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr5.3:8863150-8863169 | MS.gene57201:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5.3:8863375-8863394 | MS.gene57201:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | + | chr5.3:8865330-8865349 | MS.gene57201:CDS | 30.0% |
! | GGTTTCAAATGTTGATGTTT+TGG | + | chr5.3:8864936-8864955 | MS.gene57201:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5.3:8864224-8864243 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5.3:8864274-8864293 | MS.gene57201:intron | 30.0% |
! | TGAGGCTTTAACAATTTAAG+CGG | + | chr5.3:8865602-8865621 | MS.gene57201:intron | 30.0% |
! | TGAGGCTTTAACTAAAAAAG+CGG | + | chr5.3:8865665-8865684 | MS.gene57201:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr5.3:8865486-8865505 | None:intergenic | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr5.3:8864998-8865017 | MS.gene57201:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5.3:8863707-8863726 | MS.gene57201:intron | 30.0% |
!! | CTTCAAATACTATTTTGAGG+AGG | + | chr5.3:8864819-8864838 | MS.gene57201:CDS | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr5.3:8865378-8865397 | MS.gene57201:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr5.3:8864999-8865018 | MS.gene57201:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr5.3:8865095-8865114 | MS.gene57201:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr5.3:8865163-8865182 | MS.gene57201:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5.3:8864286-8864305 | MS.gene57201:intron | 30.0% |
!!! | TTCAAGATTTTGGAGTTCTT+AGG | + | chr5.3:8865105-8865124 | MS.gene57201:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr5.3:8864656-8864675 | MS.gene57201:CDS | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | + | chr5.3:8862933-8862952 | MS.gene57201:CDS | 35.0% | |
ATATCAACTTCATCTGAGAG+TGG | + | chr5.3:8862776-8862795 | MS.gene57201:CDS | 35.0% | |
CACAAATTCTAAGTCGAGAT+AGG | - | chr5.3:8863833-8863852 | None:intergenic | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr5.3:8864657-8864676 | MS.gene57201:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.3:8863268-8863287 | MS.gene57201:CDS | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | - | chr5.3:8864988-8865007 | None:intergenic | 35.0% | |
CGTTATGCTTGTAACAAAGA+AGG | + | chr5.3:8863016-8863035 | MS.gene57201:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr5.3:8863116-8863135 | MS.gene57201:CDS | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | + | chr5.3:8864503-8864522 | MS.gene57201:CDS | 35.0% | |
CTGAAATCTACCATGAATGT+TGG | + | chr5.3:8865219-8865238 | MS.gene57201:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr5.3:8863111-8863130 | MS.gene57201:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr5.3:8865584-8865603 | MS.gene57201:intron | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | + | chr5.3:8865559-8865578 | MS.gene57201:intron | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr5.3:8863330-8863349 | MS.gene57201:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr5.3:8863053-8863072 | MS.gene57201:CDS | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr5.3:8863094-8863113 | None:intergenic | 35.0% | |
! | ACGATGTTGACTATAATGAG+AGG | + | chr5.3:8864914-8864933 | MS.gene57201:CDS | 35.0% |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5.3:8864127-8864146 | MS.gene57201:CDS | 35.0% |
! | CGATGTTGACTATAATGAGA+GGG | + | chr5.3:8864915-8864934 | MS.gene57201:CDS | 35.0% |
! | GAGGCTTTAACAATTTAAGC+GGG | + | chr5.3:8865603-8865622 | MS.gene57201:intron | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5.3:8864586-8864605 | MS.gene57201:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5.3:8864299-8864318 | MS.gene57201:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr5.3:8865432-8865451 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr5.3:8865165-8865184 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr5.3:8864516-8864535 | MS.gene57201:CDS | 35.0% |
!!! | AAGATTTTGGAGTTCTTAGG+TGG | + | chr5.3:8865108-8865127 | MS.gene57201:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5.3:8864170-8864189 | MS.gene57201:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr5.3:8865166-8865185 | MS.gene57201:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr5.3:8864622-8864641 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr5.3:8863964-8863983 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr5.3:8865510-8865529 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | + | chr5.3:8862787-8862806 | MS.gene57201:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr5.3:8865062-8865081 | MS.gene57201:CDS | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr5.3:8865341-8865360 | MS.gene57201:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr5.3:8865061-8865080 | MS.gene57201:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr5.3:8865207-8865226 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | + | chr5.3:8866000-8866019 | MS.gene57201:CDS | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr5.3:8865232-8865251 | None:intergenic | 40.0% | |
TACATTTCAGCTGCCTTTCT+TGG | + | chr5.3:8864094-8864113 | MS.gene57201:intron | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr5.3:8864234-8864253 | MS.gene57201:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr5.3:8863960-8863979 | MS.gene57201:intron | 40.0% | |
TCTAATGACGACTCGTCAAA+AGG | + | chr5.3:8863411-8863430 | MS.gene57201:CDS | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr5.3:8864235-8864254 | None:intergenic | 40.0% | |
TTGAGGAGGACACAACAAAA+GGG | + | chr5.3:8864833-8864852 | MS.gene57201:CDS | 40.0% | |
TTTGAGGAGGACACAACAAA+AGG | + | chr5.3:8864832-8864851 | MS.gene57201:CDS | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr5.3:8865572-8865591 | None:intergenic | 40.0% | |
! | AGCCACTTAAAGTCTGAAGT+AGG | - | chr5.3:8864475-8864494 | None:intergenic | 40.0% |
! | GAGGGATAATCATGCTGATT+TGG | + | chr5.3:8864675-8864694 | MS.gene57201:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr5.3:8865424-8865443 | None:intergenic | 40.0% |
! | TGGTTTAGAATTGAAGGCTC+TGG | + | chr5.3:8863713-8863732 | MS.gene57201:intron | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr5.3:8864515-8864534 | MS.gene57201:CDS | 40.0% |
!! | GTTTTGGATGCAGAACTTGA+AGG | + | chr5.3:8864952-8864971 | MS.gene57201:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5.3:8863067-8863086 | None:intergenic | 40.0% |
!! | TCATGCTGATTTGGACTTCA+AGG | + | chr5.3:8864684-8864703 | MS.gene57201:CDS | 40.0% |
!! | TCTTATGAAGTGATGGGTGA+AGG | + | chr5.3:8863337-8863356 | MS.gene57201:CDS | 40.0% |
!!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr5.3:8863541-8863560 | MS.gene57201:CDS | 40.0% |
AATGAAGCTCTCTCGAAACC+AGG | + | chr5.3:8863478-8863497 | MS.gene57201:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr5.3:8863079-8863098 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr5.3:8864734-8864753 | MS.gene57201:CDS | 45.0% | |
ATTTGTGCTCTGTACAGCCA+TGG | + | chr5.3:8863846-8863865 | MS.gene57201:intron | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr5.3:8865083-8865102 | None:intergenic | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr5.3:8863121-8863140 | MS.gene57201:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr5.3:8864981-8865000 | None:intergenic | 45.0% | |
GGCCTACTTCAGACTTTAAG+TGG | + | chr5.3:8864470-8864489 | MS.gene57201:CDS | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr5.3:8865063-8865082 | MS.gene57201:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr5.3:8863519-8863538 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr5.3:8865353-8865372 | MS.gene57201:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr5.3:8863130-8863149 | None:intergenic | 45.0% | |
TTGAAGGAAACCTTTCCCCA+AGG | + | chr5.3:8864968-8864987 | MS.gene57201:CDS | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr5.3:8864538-8864557 | MS.gene57201:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr5.3:8864521-8864540 | MS.gene57201:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.3:8863133-8863152 | MS.gene57201:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr5.3:8864242-8864261 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr5.3:8864238-8864257 | MS.gene57201:CDS | 50.0% | |
CGCAAACACGTGTAGAAAGC+TGG | - | chr5.3:8865299-8865318 | None:intergenic | 50.0% | |
CTGTCTGTGAGCCATCTGTT+GGG | + | chr5.3:8865454-8865473 | MS.gene57201:intron | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr5.3:8864739-8864758 | None:intergenic | 50.0% | |
GACGACTCGTCAAAAGGAGA+TGG | + | chr5.3:8863417-8863436 | MS.gene57201:CDS | 50.0% | |
GACTCGTCAAAAGGAGATGG+TGG | + | chr5.3:8863420-8863439 | MS.gene57201:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+AGG | + | chr5.3:8865019-8865038 | MS.gene57201:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr5.3:8864307-8864326 | MS.gene57201:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr5.3:8865305-8865324 | MS.gene57201:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr5.3:8865346-8865365 | MS.gene57201:CDS | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr5.3:8864306-8864325 | MS.gene57201:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr5.3:8865468-8865487 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTGAAGGTGT+TGG | + | chr5.3:8863343-8863362 | MS.gene57201:CDS | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr5.3:8864255-8864274 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr5.3:8865345-8865364 | MS.gene57201:CDS | 55.0% | |
GCTGTCTGTGAGCCATCTGT+TGG | + | chr5.3:8865453-8865472 | MS.gene57201:intron | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr5.3:8864740-8864759 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr5.3:8865359-8865378 | MS.gene57201:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5.3:8863424-8863443 | MS.gene57201:CDS | 55.0% |
!! | GTGATGGGTGAAGGTGTTGG+AGG | + | chr5.3:8863346-8863365 | MS.gene57201:CDS | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr5.3:8865308-8865327 | MS.gene57201:CDS | 60.0% | |
!! | GGGTGAAGGTGTTGGAGGCA+CGG | + | chr5.3:8863351-8863370 | MS.gene57201:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 8862767 | 8866068 | 8862767 | ID=MS.gene57201 |
chr5.3 | mRNA | 8862767 | 8866068 | 8862767 | ID=MS.gene57201.t1;Parent=MS.gene57201 |
chr5.3 | exon | 8862767 | 8863649 | 8862767 | ID=MS.gene57201.t1.exon1;Parent=MS.gene57201.t1 |
chr5.3 | CDS | 8862767 | 8863649 | 8862767 | ID=cds.MS.gene57201.t1;Parent=MS.gene57201.t1 |
chr5.3 | exon | 8864104 | 8864259 | 8864104 | ID=MS.gene57201.t1.exon2;Parent=MS.gene57201.t1 |
chr5.3 | CDS | 8864104 | 8864259 | 8864104 | ID=cds.MS.gene57201.t1;Parent=MS.gene57201.t1 |
chr5.3 | exon | 8864296 | 8865459 | 8864296 | ID=MS.gene57201.t1.exon3;Parent=MS.gene57201.t1 |
chr5.3 | CDS | 8864296 | 8865459 | 8864296 | ID=cds.MS.gene57201.t1;Parent=MS.gene57201.t1 |
chr5.3 | exon | 8865977 | 8866068 | 8865977 | ID=MS.gene57201.t1.exon4;Parent=MS.gene57201.t1 |
chr5.3 | CDS | 8865977 | 8866068 | 8865977 | ID=cds.MS.gene57201.t1;Parent=MS.gene57201.t1 |
Gene Sequence |
Protein sequence |