AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57206

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57206.t1 MTR_5g015950 94.866 448 23 0 1 448 1 448 0.0 870
MS.gene57206.t1 MTR_3g053270 94.866 448 23 0 1 448 1 448 0.0 870
MS.gene57206.t1 MTR_4g095500 67.249 458 128 8 1 448 25 470 0.0 594
MS.gene57206.t1 MTR_2g089100 45.035 433 194 9 28 448 45 445 1.12e-122 365
MS.gene57206.t1 MTR_4g097080 27.209 430 260 9 24 447 122 504 1.79e-49 176
MS.gene57206.t1 MTR_5g015490 27.446 419 257 11 35 447 114 491 3.66e-44 161
MS.gene57206.t1 MTR_1g029420 26.506 415 257 6 33 445 223 591 2.84e-40 152
MS.gene57206.t1 MTR_3g089055 27.014 422 246 8 33 445 201 569 4.89e-40 151
MS.gene57206.t1 MTR_3g089055 27.014 422 246 8 33 445 196 564 5.15e-40 151
MS.gene57206.t1 MTR_2g099110 27.189 434 242 13 34 447 73 452 5.04e-37 141
MS.gene57206.t1 MTR_5g094450 24.429 438 265 10 21 445 147 531 7.47e-35 136
MS.gene57206.t1 MTR_2g082090 26.241 423 250 10 32 445 209 578 8.88e-35 136
MS.gene57206.t1 MTR_3g056110 24.762 420 260 9 32 445 172 541 1.26e-34 135
MS.gene57206.t1 MTR_5g097480 25.943 424 250 10 32 445 174 543 1.43e-33 132
MS.gene57206.t1 MTR_4g133660 25.581 430 247 11 32 446 172 543 9.69e-33 130
MS.gene57206.t1 MTR_8g442410 26.316 418 251 13 36 445 156 524 2.70e-32 129
MS.gene57206.t1 MTR_4g064150 24.586 423 268 12 32 448 358 735 6.33e-32 129
MS.gene57206.t1 MTR_8g020840 26.887 424 254 12 33 445 169 547 6.27e-31 125
MS.gene57206.t1 MTR_2g026250 25.416 421 257 10 32 445 225 595 1.31e-29 122
MS.gene57206.t1 MTR_7g027190 26.540 422 250 14 35 445 300 672 4.70e-29 120
MS.gene57206.t1 MTR_2g097410 24.408 422 268 13 32 448 368 743 5.18e-29 120
MS.gene57206.t1 MTR_3g065980 25.467 428 240 10 36 445 173 539 1.18e-28 119
MS.gene57206.t1 MTR_4g064180 23.753 421 269 13 32 446 251 625 1.93e-28 118
MS.gene57206.t1 MTR_4g064120 24.113 423 265 15 32 446 251 625 8.15e-28 116
MS.gene57206.t1 MTR_4g104020 26.887 424 246 14 34 445 148 519 2.04e-27 115
MS.gene57206.t1 MTR_4g064160 25.059 423 262 15 32 448 313 686 5.22e-25 108
MS.gene57206.t1 MTR_4g064200 24.821 419 260 15 35 448 284 652 6.84e-25 108
MS.gene57206.t1 MTR_3g022830 24.429 438 275 12 36 445 26 435 8.19e-25 106
MS.gene57206.t1 MTR_4g102790 23.333 420 267 12 35 447 292 663 3.74e-24 105
MS.gene57206.t1 MTR_7g062120 22.642 424 271 11 32 448 369 742 5.16e-23 102
MS.gene57206.t1 MTR_2g097310 23.404 423 267 13 32 448 269 640 6.94e-23 102
MS.gene57206.t1 MTR_2g097473 22.430 428 276 12 27 448 279 656 7.30e-22 99.0
MS.gene57206.t1 MTR_7g057230 25.056 443 257 11 9 445 283 656 8.22e-22 99.0
MS.gene57206.t1 MTR_2g097463 22.897 428 274 12 27 448 280 657 8.22e-22 99.0
MS.gene57206.t1 MTR_4g076140 22.653 490 286 14 9 445 19 468 1.10e-21 97.8
MS.gene57206.t1 MTR_5g009080 22.944 462 265 12 35 445 56 477 2.15e-21 96.7
MS.gene57206.t1 MTR_4g077760 25.653 421 254 12 30 445 188 554 3.31e-21 96.7
MS.gene57206.t1 MTR_7g074650 22.330 412 259 12 38 447 441 793 3.62e-21 97.1
MS.gene57206.t1 MTR_2g097467 22.542 417 271 11 35 448 289 656 3.63e-21 96.7
MS.gene57206.t1 MTR_6g047750 24.883 426 254 11 31 445 291 661 5.21e-21 96.3
MS.gene57206.t1 MTR_1g069725 21.928 415 259 12 35 445 109 462 7.63e-19 89.0
MS.gene57206.t1 MTR_8g093070 24.299 428 242 14 35 448 139 498 2.71e-17 84.3
MS.gene57206.t1 MTR_2g097380 22.222 414 234 15 42 448 231 563 1.22e-16 82.8
MS.gene57206.t1 MTR_1g096030 23.451 452 249 16 22 445 76 458 4.51e-16 80.5
MS.gene57206.t1 MTR_7g109580 23.529 323 198 9 129 445 274 553 2.09e-14 75.9
MS.gene57206.t1 MTR_5g058860 23.877 423 265 17 35 445 119 496 1.82e-13 72.8
MS.gene57206.t1 MTR_3g072710 22.222 324 210 7 126 445 214 499 2.12e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57206.t1 AT3G49950 56.979 437 148 9 14 447 10 409 8.75e-169 480
MS.gene57206.t1 AT5G67411 55.066 227 75 4 163 387 1 202 1.55e-75 235
MS.gene57206.t1 AT4G37650 28.188 447 271 12 14 448 123 531 1.46e-42 157
MS.gene57206.t1 AT2G04890 25.481 416 255 7 32 445 50 412 5.12e-35 135
MS.gene57206.t1 AT1G21450 26.005 423 250 9 33 445 223 592 3.24e-34 135
MS.gene57206.t1 AT5G48150 27.229 415 249 8 36 445 123 489 1.31e-33 132
MS.gene57206.t1 AT5G48150 27.229 415 249 8 36 445 123 489 1.31e-33 132
MS.gene57206.t1 AT5G48150 27.229 415 249 8 36 445 123 489 1.31e-33 132
MS.gene57206.t1 AT5G48150 27.229 415 249 8 36 445 123 489 1.31e-33 132
MS.gene57206.t1 AT1G50600 25.298 419 259 10 32 445 156 525 1.13e-32 130
MS.gene57206.t1 AT5G17490 25.604 414 249 6 34 445 159 515 1.80e-32 129
MS.gene57206.t1 AT1G50600 25.298 419 259 10 32 445 227 596 1.82e-32 130
MS.gene57206.t1 AT1G50600 25.298 419 259 10 32 445 231 600 1.85e-32 130
MS.gene57206.t1 AT3G03450 25.728 412 253 8 36 445 184 544 1.52e-31 127
MS.gene57206.t1 AT4G17230 24.648 426 257 9 32 447 155 526 1.83e-30 124
MS.gene57206.t1 AT4G17230 24.648 426 257 9 32 447 155 526 1.83e-30 124
MS.gene57206.t1 AT2G29065 26.014 419 265 12 35 448 252 630 1.81e-29 121
MS.gene57206.t1 AT3G13840 26.651 424 240 14 33 445 146 509 1.06e-27 115
MS.gene57206.t1 AT1G14920 24.096 415 251 12 36 445 173 528 1.03e-25 110
MS.gene57206.t1 AT5G52510 23.041 434 257 11 31 445 264 639 2.37e-25 109
MS.gene57206.t1 AT2G01570 23.729 413 255 12 36 445 225 580 4.27e-25 108
MS.gene57206.t1 AT1G50420 24.342 456 266 14 35 445 57 478 4.89e-25 107
MS.gene57206.t1 AT2G37650 23.753 421 266 14 32 447 332 702 1.66e-24 107
MS.gene57206.t1 AT2G37650 23.753 421 266 14 32 447 344 714 1.91e-24 107
MS.gene57206.t1 AT3G46600 22.931 423 270 9 32 448 1 373 1.08e-22 99.8
MS.gene57206.t1 AT1G66350 23.002 413 252 8 36 445 156 505 1.44e-22 100
MS.gene57206.t1 AT3G46600 23.239 426 265 9 32 448 209 581 4.82e-22 99.4
MS.gene57206.t1 AT5G59450 23.394 436 280 10 20 448 212 600 6.61e-22 99.0
MS.gene57206.t1 AT3G46600 23.005 426 266 9 32 448 177 549 7.46e-22 98.6
MS.gene57206.t1 AT1G07520 24.424 434 252 17 35 448 154 531 1.62e-21 97.4
MS.gene57206.t1 AT1G07520 24.424 434 252 17 35 448 154 531 1.62e-21 97.4
MS.gene57206.t1 AT1G55580 23.690 439 275 12 32 445 41 444 1.86e-21 96.7
MS.gene57206.t1 AT1G07520 24.424 434 252 17 35 448 318 695 1.87e-21 97.8
MS.gene57206.t1 AT1G07520 24.424 434 252 17 35 448 319 696 2.09e-21 97.8
MS.gene57206.t1 AT1G63100 22.951 427 263 13 35 445 277 653 1.72e-19 91.7
MS.gene57206.t1 AT1G63100 22.951 427 263 13 35 445 252 628 2.19e-19 91.3
MS.gene57206.t1 AT1G07530 20.903 421 283 10 32 448 393 767 2.80e-19 91.3
MS.gene57206.t1 AT2G29060 22.642 424 272 12 32 447 281 656 3.16e-19 90.9
MS.gene57206.t1 AT2G29060 22.642 424 272 12 32 447 318 693 3.40e-19 90.9
MS.gene57206.t1 AT5G41920 22.782 417 256 14 35 445 43 399 1.98e-17 84.3
MS.gene57206.t1 AT5G66770 26.370 292 176 8 126 414 294 549 3.50e-17 84.3
MS.gene57206.t1 AT3G50650 24.706 340 190 9 126 445 248 541 4.95e-13 71.6
MS.gene57206.t1 AT4G08250 24.706 425 251 19 35 445 107 476 5.01e-11 65.1

Find 73 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTTCTTACGACGAATT+AGG 0.219981 5.3:+8785271 MS.gene57206:CDS
CGACGAATTAGGTTCAAAAT+TGG 0.230348 5.3:+8785282 MS.gene57206:CDS
AATCCGCGTTTAATTATCTT+TGG 0.234805 5.3:+8785650 MS.gene57206:CDS
GCAGCTGTTAGCTTGATTAA+AGG 0.266223 5.3:-8785193 None:intergenic
TTTCAGTGAGGATTCGGTTT+TGG 0.295734 5.3:+8785858 MS.gene57206:CDS
TAAAACAAGAAACGTGATTA+TGG 0.317994 5.3:+8785315 MS.gene57206:CDS
AAGTGTAGCAGAGGGTTATT+AGG 0.318285 5.3:-8784710 None:intergenic
ATGAGCTTCTTGTGCTTACT+TGG 0.341746 5.3:+8785935 MS.gene57206:CDS
AATGTAAATAGAGTTTCTTC+AGG 0.361286 5.3:-8785472 None:intergenic
AGATTTAACATCAAGTAGTT+TGG 0.367518 5.3:+8785615 MS.gene57206:CDS
AGATCAAGCATTGGTGGAAC+TGG 0.372508 5.3:-8785253 None:intergenic
GCATTGGTGGAACTGGAATA+TGG 0.373190 5.3:-8785246 None:intergenic
CACTAGCACAACAAATCCTT+TGG 0.378101 5.3:+8784801 MS.gene57206:CDS
GCTTCCTGCTAGGCGTTGAT+TGG 0.395425 5.3:-8784858 None:intergenic
TCCACCAAGACTACTATTGT+TGG 0.440895 5.3:-8785583 None:intergenic
TTAACACCTTGGCATCGTTT+CGG 0.442385 5.3:+8785034 MS.gene57206:CDS
TCTCATTCGTTGCTCCCACT+TGG 0.447629 5.3:-8785812 None:intergenic
ATGATAGTTATAACTATTTG+CGG 0.450034 5.3:-8784951 None:intergenic
AGTTTGTTTCAGTGAGGATT+CGG 0.453807 5.3:+8785852 MS.gene57206:CDS
GAACAAGGACTAATAACTAC+AGG 0.460908 5.3:-8784674 None:intergenic
TAATAAATCTCATGAAGCAT+TGG 0.465324 5.3:+8785417 MS.gene57206:CDS
CTGAGGGTGTTGTGTTGTTA+AGG 0.465694 5.3:-8784826 None:intergenic
GGTATGAAGCTGAAATTTGT+TGG 0.481427 5.3:+8785728 MS.gene57206:CDS
GCAATTCTAGAAGCTACTAA+AGG 0.483791 5.3:+8785076 MS.gene57206:CDS
GTCTCCAATCAACGCCTAGC+AGG 0.489729 5.3:+8784854 MS.gene57206:CDS
GAGTAACTGCTCCATGCAAT+TGG 0.490828 5.3:-8784741 None:intergenic
AGATCCAACAATAGTAGTCT+TGG 0.491194 5.3:+8785579 MS.gene57206:CDS
ATGTTATGTTTGCTTCTGCT+TGG 0.495765 5.3:+8785968 MS.gene57206:CDS
AGAAAACTCGTGTGTTTGTA+TGG 0.500579 5.3:-8784984 None:intergenic
CTTCTTGTGCTTACTTGGAA+AGG 0.503343 5.3:+8785940 MS.gene57206:CDS
TTCTGGAATATTGCAACTAC+AGG 0.513561 5.3:-8784915 None:intergenic
TGATGAACATGCAGCTGGAT+GGG 0.514109 5.3:+8785897 MS.gene57206:CDS
ATTGTTGCTTTCAATTGCAC+TGG 0.516587 5.3:-8784774 None:intergenic
TAGCAGAGGGTTATTAGGTG+TGG 0.517109 5.3:-8784705 None:intergenic
TCCAACAATAGTAGTCTTGG+TGG 0.517493 5.3:+8785582 MS.gene57206:CDS
GAGAATGTGATAGCATATGA+AGG 0.519545 5.3:+8785757 MS.gene57206:CDS
AATGTGTCCACCGTGTCAAA+CGG 0.536257 5.3:-8785676 None:intergenic
ACTAGCACAACAAATCCTTT+GGG 0.538819 5.3:+8784802 MS.gene57206:CDS
CTTCAACAACGCCAATTGCA+TGG 0.549170 5.3:+8784730 MS.gene57206:CDS
ATGCTTGATGAACATGCAGC+TGG 0.552523 5.3:+8785892 MS.gene57206:CDS
GTGGGAGCAACGAATGAGAA+AGG 0.554477 5.3:+8785816 MS.gene57206:CDS
TTGATTGGAGACGTCGTCTG+AGG 0.558311 5.3:-8784843 None:intergenic
GATGAACATGCAGCTGGATG+GGG 0.559473 5.3:+8785898 MS.gene57206:CDS
TGAAGCTGAAATTTGTTGGA+AGG 0.560306 5.3:+8785732 MS.gene57206:CDS
GTTTCTTCAACTTATTCAGA+CGG 0.564374 5.3:+8785349 MS.gene57206:CDS
CGTTGTTGAAGTGTAGCAGA+GGG 0.568775 5.3:-8784718 None:intergenic
TAAGAAAGATCAAGCATTGG+TGG 0.570387 5.3:-8785259 None:intergenic
AGCAGAGGGTTATTAGGTGT+GGG 0.572545 5.3:-8784704 None:intergenic
CTCGAATGAAGCTTCCTGCT+AGG 0.577569 5.3:-8784868 None:intergenic
TTGATGAACATGCAGCTGGA+TGG 0.579446 5.3:+8785896 MS.gene57206:CDS
TTGTGTTGTTAAGGACCCAA+AGG 0.585571 5.3:-8784817 None:intergenic
GCAATGGCGTCGATTAGTGT+AGG 0.586251 5.3:-8785151 None:intergenic
TGATTGGAGACGTCGTCTGA+GGG 0.588030 5.3:-8784842 None:intergenic
TGCCTTTGTTTACTCCCTCG+TGG 0.588128 5.3:-8785703 None:intergenic
GCTGTTAGCTTGATTAAAGG+AGG 0.610301 5.3:-8785190 None:intergenic
AACCTCATGATGATTTGCAA+TGG 0.610435 5.3:-8785167 None:intergenic
CAGCTGCAGTTAATAACTGT+AGG 0.611302 5.3:+8785209 MS.gene57206:CDS
AATGTTGCACTTGCACTCGT+AGG 0.611711 5.3:-8785393 None:intergenic
CGCCATTGCAAATCATCATG+AGG 0.616800 5.3:+8785165 MS.gene57206:CDS
TTGGATACCGTTTGACACGG+TGG 0.625357 5.3:+8785669 MS.gene57206:CDS
TCTTTGGATACCGTTTGACA+CGG 0.625561 5.3:+8785666 MS.gene57206:CDS
AGAATGTGATAGCATATGAA+GGG 0.625664 5.3:+8785758 MS.gene57206:CDS
GAGGGAGTAAACAAAGGCAG+TGG 0.640189 5.3:+8785707 MS.gene57206:CDS
TCAAGGAGTTTGTTTCAGTG+AGG 0.641089 5.3:+8785846 MS.gene57206:CDS
GGTGTGGGAAATTCTGAACA+AGG 0.649547 5.3:-8784689 None:intergenic
GCGTTGTTGAAGTGTAGCAG+AGG 0.655117 5.3:-8784719 None:intergenic
TCGTAAGAAAGATCAAGCAT+TGG 0.656089 5.3:-8785262 None:intergenic
GAGTCGAGTCTAAAACCAAG+TGG 0.658958 5.3:+8785797 MS.gene57206:CDS
AACAAGGACTAATAACTACA+GGG 0.659957 5.3:-8784673 None:intergenic
AGTCGAGTCTAAAACCAAGT+GGG 0.662079 5.3:+8785798 MS.gene57206:CDS
TACCACGAGGGAGTAAACAA+AGG 0.668759 5.3:+8785701 MS.gene57206:CDS
GTGTAACCGAAACGATGCCA+AGG 0.704462 5.3:-8785040 None:intergenic
TATCCAAAGATAATTAAACG+CGG 0.789557 5.3:-8785653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATAGTTATAACTATTTG+CGG - chr5.3:8784954-8784973 None:intergenic 20.0%
!!! ATTTTATTGATTTAACACCT+TGG + chr5.3:8785023-8785042 MS.gene57206:CDS 20.0%
! AATGTAAATAGAGTTTCTTC+AGG - chr5.3:8785475-8785494 None:intergenic 25.0%
! AGATTTAACATCAAGTAGTT+TGG + chr5.3:8785615-8785634 MS.gene57206:CDS 25.0%
! TAAAACAAGAAACGTGATTA+TGG + chr5.3:8785315-8785334 MS.gene57206:CDS 25.0%
! TAATAAATCTCATGAAGCAT+TGG + chr5.3:8785417-8785436 MS.gene57206:CDS 25.0%
! TATCCAAAGATAATTAAACG+CGG - chr5.3:8785656-8785675 None:intergenic 25.0%
AACAAGGACTAATAACTACA+GGG - chr5.3:8784676-8784695 None:intergenic 30.0%
AATCCGCGTTTAATTATCTT+TGG + chr5.3:8785650-8785669 MS.gene57206:CDS 30.0%
AGAATGTGATAGCATATGAA+GGG + chr5.3:8785758-8785777 MS.gene57206:CDS 30.0%
GTTTCTTCAACTTATTCAGA+CGG + chr5.3:8785349-8785368 MS.gene57206:CDS 30.0%
ACTAGCACAACAAATCCTTT+GGG + chr5.3:8784802-8784821 MS.gene57206:CDS 35.0%
AGAAAACTCGTGTGTTTGTA+TGG - chr5.3:8784987-8785006 None:intergenic 35.0%
AGATCCAACAATAGTAGTCT+TGG + chr5.3:8785579-8785598 MS.gene57206:CDS 35.0%
ATGTTATGTTTGCTTCTGCT+TGG + chr5.3:8785968-8785987 MS.gene57206:CDS 35.0%
CGACGAATTAGGTTCAAAAT+TGG + chr5.3:8785282-8785301 MS.gene57206:CDS 35.0%
GAACAAGGACTAATAACTAC+AGG - chr5.3:8784677-8784696 None:intergenic 35.0%
GAGAATGTGATAGCATATGA+AGG + chr5.3:8785757-8785776 MS.gene57206:CDS 35.0%
GATCTTTCTTACGACGAATT+AGG + chr5.3:8785271-8785290 MS.gene57206:CDS 35.0%
GGTATGAAGCTGAAATTTGT+TGG + chr5.3:8785728-8785747 MS.gene57206:CDS 35.0%
TCGTAAGAAAGATCAAGCAT+TGG - chr5.3:8785265-8785284 None:intergenic 35.0%
! AACCTCATGATGATTTGCAA+TGG - chr5.3:8785170-8785189 None:intergenic 35.0%
! AGTTTGTTTCAGTGAGGATT+CGG + chr5.3:8785852-8785871 MS.gene57206:CDS 35.0%
! GCAATTCTAGAAGCTACTAA+AGG + chr5.3:8785076-8785095 MS.gene57206:CDS 35.0%
!! ATTGTTGCTTTCAATTGCAC+TGG - chr5.3:8784777-8784796 None:intergenic 35.0%
!! TAAGAAAGATCAAGCATTGG+TGG - chr5.3:8785262-8785281 None:intergenic 35.0%
!! TGAAGCTGAAATTTGTTGGA+AGG + chr5.3:8785732-8785751 MS.gene57206:CDS 35.0%
!! TTCTGGAATATTGCAACTAC+AGG - chr5.3:8784918-8784937 None:intergenic 35.0%
!!! CGATGTTTTTAGAAGCTGTA+CGG + chr5.3:8785551-8785570 MS.gene57206:CDS 35.0%
AAGTGTAGCAGAGGGTTATT+AGG - chr5.3:8784713-8784732 None:intergenic 40.0%
ATGAGCTTCTTGTGCTTACT+TGG + chr5.3:8785935-8785954 MS.gene57206:CDS 40.0%
CACTAGCACAACAAATCCTT+TGG + chr5.3:8784801-8784820 MS.gene57206:CDS 40.0%
CAGCTGCAGTTAATAACTGT+AGG + chr5.3:8785209-8785228 MS.gene57206:CDS 40.0%
CTTCTTGTGCTTACTTGGAA+AGG + chr5.3:8785940-8785959 MS.gene57206:CDS 40.0%
TCCACCAAGACTACTATTGT+TGG - chr5.3:8785586-8785605 None:intergenic 40.0%
TCTTTGGATACCGTTTGACA+CGG + chr5.3:8785666-8785685 MS.gene57206:CDS 40.0%
TTAACACCTTGGCATCGTTT+CGG + chr5.3:8785034-8785053 MS.gene57206:CDS 40.0%
! AGTCGAGTCTAAAACCAAGT+GGG + chr5.3:8785798-8785817 MS.gene57206:CDS 40.0%
! GCAGCTGTTAGCTTGATTAA+AGG - chr5.3:8785196-8785215 None:intergenic 40.0%
! GCTGTTAGCTTGATTAAAGG+AGG - chr5.3:8785193-8785212 None:intergenic 40.0%
! TCAAGGAGTTTGTTTCAGTG+AGG + chr5.3:8785846-8785865 MS.gene57206:CDS 40.0%
! TCCAACAATAGTAGTCTTGG+TGG + chr5.3:8785582-8785601 MS.gene57206:CDS 40.0%
! TGGACACATTTTTACCACGA+GGG + chr5.3:8785689-8785708 MS.gene57206:CDS 40.0%
! TTCTAAAAACATCGAGCGCA+GGG - chr5.3:8785545-8785564 None:intergenic 40.0%
! TTGTGTTGTTAAGGACCCAA+AGG - chr5.3:8784820-8784839 None:intergenic 40.0%
!! ATGAGAAAGGCACGTTTTCA+AGG + chr5.3:8785829-8785848 MS.gene57206:CDS 40.0%
!! TTTCAGTGAGGATTCGGTTT+TGG + chr5.3:8785858-8785877 MS.gene57206:CDS 40.0%
!!! GATTCGGTTTTGGAGGTTAA+GGG + chr5.3:8785868-8785887 MS.gene57206:CDS 40.0%
AATGTGTCCACCGTGTCAAA+CGG - chr5.3:8785679-8785698 None:intergenic 45.0%
AATGTTGCACTTGCACTCGT+AGG - chr5.3:8785396-8785415 None:intergenic 45.0%
AGCAGAGGGTTATTAGGTGT+GGG - chr5.3:8784707-8784726 None:intergenic 45.0%
ATGCTTGATGAACATGCAGC+TGG + chr5.3:8785892-8785911 MS.gene57206:CDS 45.0%
CGCCATTGCAAATCATCATG+AGG + chr5.3:8785165-8785184 MS.gene57206:CDS 45.0%
CGTTGTTGAAGTGTAGCAGA+GGG - chr5.3:8784721-8784740 None:intergenic 45.0%
CTTCAACAACGCCAATTGCA+TGG + chr5.3:8784730-8784749 MS.gene57206:CDS 45.0%
GAGTAACTGCTCCATGCAAT+TGG - chr5.3:8784744-8784763 None:intergenic 45.0%
GGTGTGGGAAATTCTGAACA+AGG - chr5.3:8784692-8784711 None:intergenic 45.0%
TACCACGAGGGAGTAAACAA+AGG + chr5.3:8785701-8785720 MS.gene57206:CDS 45.0%
TAGCAGAGGGTTATTAGGTG+TGG - chr5.3:8784708-8784727 None:intergenic 45.0%
TGATGAACATGCAGCTGGAT+GGG + chr5.3:8785897-8785916 MS.gene57206:CDS 45.0%
TTGATGAACATGCAGCTGGA+TGG + chr5.3:8785896-8785915 MS.gene57206:CDS 45.0%
! CTTCTAAAAACATCGAGCGC+AGG - chr5.3:8785546-8785565 None:intergenic 45.0%
! GAGTCGAGTCTAAAACCAAG+TGG + chr5.3:8785797-8785816 MS.gene57206:CDS 45.0%
! GCATTGGTGGAACTGGAATA+TGG - chr5.3:8785249-8785268 None:intergenic 45.0%
! GCGGTTTTTGTAACTGCTTC+TGG - chr5.3:8784935-8784954 None:intergenic 45.0%
! GTGGACACATTTTTACCACG+AGG + chr5.3:8785688-8785707 MS.gene57206:CDS 45.0%
!! AGATCAAGCATTGGTGGAAC+TGG - chr5.3:8785256-8785275 None:intergenic 45.0%
!! CTGAGGGTGTTGTGTTGTTA+AGG - chr5.3:8784829-8784848 None:intergenic 45.0%
!!! GGATTCGGTTTTGGAGGTTA+AGG + chr5.3:8785867-8785886 MS.gene57206:CDS 45.0%
CTCGAATGAAGCTTCCTGCT+AGG - chr5.3:8784871-8784890 None:intergenic 50.0%
GAGGGAGTAAACAAAGGCAG+TGG + chr5.3:8785707-8785726 MS.gene57206:CDS 50.0%
GATGAACATGCAGCTGGATG+GGG + chr5.3:8785898-8785917 MS.gene57206:CDS 50.0%
GCGTTGTTGAAGTGTAGCAG+AGG - chr5.3:8784722-8784741 None:intergenic 50.0%
GTGGGAGCAACGAATGAGAA+AGG + chr5.3:8785816-8785835 MS.gene57206:CDS 50.0%
GTGTAACCGAAACGATGCCA+AGG - chr5.3:8785043-8785062 None:intergenic 50.0%
TCTCATTCGTTGCTCCCACT+TGG - chr5.3:8785815-8785834 None:intergenic 50.0%
TGATTGGAGACGTCGTCTGA+GGG - chr5.3:8784845-8784864 None:intergenic 50.0%
TTGATTGGAGACGTCGTCTG+AGG - chr5.3:8784846-8784865 None:intergenic 50.0%
TTGGATACCGTTTGACACGG+TGG + chr5.3:8785669-8785688 MS.gene57206:CDS 50.0%
! TGCCTTTGTTTACTCCCTCG+TGG - chr5.3:8785706-8785725 None:intergenic 50.0%
!! CAGTGAGGATTCGGTTTTGG+AGG + chr5.3:8785861-8785880 MS.gene57206:CDS 50.0%
!! GCAATGGCGTCGATTAGTGT+AGG - chr5.3:8785154-8785173 None:intergenic 50.0%
GTCTCCAATCAACGCCTAGC+AGG + chr5.3:8784854-8784873 MS.gene57206:CDS 55.0%
!! GCTTCCTGCTAGGCGTTGAT+TGG - chr5.3:8784861-8784880 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 8784656 8786002 8784656 ID=MS.gene57206
chr5.3 mRNA 8784656 8786002 8784656 ID=MS.gene57206.t1;Parent=MS.gene57206
chr5.3 exon 8784656 8786002 8784656 ID=MS.gene57206.t1.exon1;Parent=MS.gene57206.t1
chr5.3 CDS 8784656 8786002 8784656 ID=cds.MS.gene57206.t1;Parent=MS.gene57206.t1
Gene Sequence

>MS.gene57206

ATGAACAAAAATCAAATCCCTGTAGTTATTAGTCCTTGTTCAGAATTTCCCACACCTAATAACCCTCTGCTACACTTCAACAACGCCAATTGCATGGAGCAGTTACTCATTCACTGTGCCAGTGCAATTGAAAGCAACAATGCAACACTAGCACAACAAATCCTTTGGGTCCTTAACAACACAACACCCTCAGACGACGTCTCCAATCAACGCCTAGCAGGAAGCTTCATTCGAGCTCTTACAACGCGTGCAAGAAGATCCTGTAGTTGCAATATTCCAGAAGCAGTTACAAAAACCGCAAATAGTTATAACTATCATCACAATCTCGCCATACAAACACACGAGTTTTCTGTCATTGAGTTAGCAAATTTTATTGATTTAACACCTTGGCATCGTTTCGGTTACACAGCAGCTAATTCTGCAATTCTAGAAGCTACTAAAGGATTTTCAGTTATTCACATTGTTGATTTGAGTTTAACACACTGCATGCAGATTCCTACACTAATCGACGCCATTGCAAATCATCATGAGGTTCCTCCTTTAATCAAGCTAACAGCTGCAGTTAATAACTGTAGGAATAAGAATATTAACCATATTCCAGTTCCACCAATGCTTGATCTTTCTTACGACGAATTAGGTTCAAAATTGGTTAATTTTGCTAAAACAAGAAACGTGATTATGGAATTCAAAGCTGTTTCTTCAACTTATTCAGACGGATTTGCTTCGTTGATTGAACACCTACGAGTGCAAGTGCAACATTTTAATAAATCTCATGAAGCATTGGTTATAAACTGTCACATGATGCTTCATTATATTCCTGAAGAAACTCTATTTACATTTAATGATACAAATTCAAATTTGAATTTGAATTTAAACTCTTGTTCATCCCTGCGCTCGATGTTTTTAGAAGCTGTACGGAGTTTAGATCCAACAATAGTAGTCTTGGTGGATGAAGATGCAGATTTAACATCAAGTAGTTTGGTTAGTAGACTAAAATCCGCGTTTAATTATCTTTGGATACCGTTTGACACGGTGGACACATTTTTACCACGAGGGAGTAAACAAAGGCAGTGGTATGAAGCTGAAATTTGTTGGAAGGTTGAGAATGTGATAGCATATGAAGGGATTCAGAGAGTTGAGAGAGTCGAGTCTAAAACCAAGTGGGAGCAACGAATGAGAAAGGCACGTTTTCAAGGAGTTTGTTTCAGTGAGGATTCGGTTTTGGAGGTTAAGGGTATGCTTGATGAACATGCAGCTGGATGGGGATTGAAGAAAGAAGATGAGCTTCTTGTGCTTACTTGGAAAGGACATAATGTTATGTTTGCTTCTGCTTGGTTACCTTCTTGA
Protein sequence

>MS.gene57206.t1

MNKNQIPVVISPCSEFPTPNNPLLHFNNANCMEQLLIHCASAIESNNATLAQQILWVLNNTTPSDDVSNQRLAGSFIRALTTRARRSCSCNIPEAVTKTANSYNYHHNLAIQTHEFSVIELANFIDLTPWHRFGYTAANSAILEATKGFSVIHIVDLSLTHCMQIPTLIDAIANHHEVPPLIKLTAAVNNCRNKNINHIPVPPMLDLSYDELGSKLVNFAKTRNVIMEFKAVSSTYSDGFASLIEHLRVQVQHFNKSHEALVINCHMMLHYIPEETLFTFNDTNSNLNLNLNSCSSLRSMFLEAVRSLDPTIVVLVDEDADLTSSSLVSRLKSAFNYLWIPFDTVDTFLPRGSKQRQWYEAEICWKVENVIAYEGIQRVERVESKTKWEQRMRKARFQGVCFSEDSVLEVKGMLDEHAAGWGLKKEDELLVLTWKGHNVMFASAWLPS