AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57304

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57304.t1 MTR_8g017210 33.929 168 96 6 109 276 75 227 3.20e-22 97.1
MS.gene57304.t1 MTR_2g093960 31.633 196 119 6 109 304 45 225 4.05e-22 95.9
MS.gene57304.t1 MTR_4g059870 33.721 172 99 6 109 280 51 207 1.22e-21 95.1
MS.gene57304.t1 MTR_1g093095 36.986 146 86 5 127 269 117 259 3.61e-21 91.7
MS.gene57304.t1 MTR_2g099990 32.370 173 102 6 109 281 59 216 1.34e-20 92.0
MS.gene57304.t1 MTR_2g090745 33.333 162 93 6 95 256 10 156 1.81e-19 88.6
MS.gene57304.t1 MTR_1g112270 32.450 151 91 5 106 256 54 193 2.07e-19 89.0
MS.gene57304.t1 MTR_1g112270 32.432 148 89 5 109 256 68 204 3.65e-19 88.2
MS.gene57304.t1 MTR_2g099990 33.333 162 93 6 120 281 1 147 5.56e-19 87.0
MS.gene57304.t1 MTR_1g016010 35.811 148 85 5 109 256 54 191 7.62e-19 87.0
MS.gene57304.t1 MTR_1g094115 33.775 151 89 5 106 256 57 196 1.00e-18 87.0
MS.gene57304.t1 MTR_1g094115 35.878 131 73 5 126 256 60 179 6.73e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57304.t1 AT1G34370 56.805 169 66 3 110 273 19 185 1.29e-64 205
MS.gene57304.t1 AT1G34370 56.805 169 66 3 110 273 229 395 1.04e-63 209
MS.gene57304.t1 AT1G34370 56.805 169 66 3 110 273 229 395 1.04e-63 209
MS.gene57304.t1 AT5G22890 39.241 316 135 9 17 276 57 371 5.11e-63 204
MS.gene57304.t1 AT1G08290 39.007 141 80 5 127 265 182 318 4.28e-22 95.1
MS.gene57304.t1 AT5G66730 36.486 148 83 5 109 256 45 181 4.57e-22 96.7
MS.gene57304.t1 AT5G44160 35.135 148 85 5 109 256 50 186 5.55e-22 96.3
MS.gene57304.t1 AT5G44160 35.135 148 85 5 109 256 11 147 6.83e-22 95.5
MS.gene57304.t1 AT5G60470 34.615 156 90 5 101 256 51 194 7.00e-22 95.9
MS.gene57304.t1 AT1G13290 37.415 147 87 4 127 271 103 246 7.14e-22 94.0
MS.gene57304.t1 AT5G60470 34.615 156 90 5 101 256 47 190 7.47e-22 95.9
MS.gene57304.t1 AT5G60470 34.228 149 88 4 108 256 47 185 7.91e-22 95.5
MS.gene57304.t1 AT3G45260 31.977 172 103 5 109 280 52 209 8.35e-22 95.5
MS.gene57304.t1 AT3G45260 31.977 172 103 5 109 280 52 209 8.35e-22 95.5
MS.gene57304.t1 AT5G03150 35.811 148 85 4 109 256 66 203 1.06e-21 95.5
MS.gene57304.t1 AT1G51220 39.189 148 83 6 127 272 180 322 1.25e-21 94.0
MS.gene57304.t1 AT3G50700 36.471 170 91 7 87 256 31 183 1.92e-21 94.4
MS.gene57304.t1 AT1G03840 35.099 151 87 5 106 256 49 188 2.19e-21 94.7
MS.gene57304.t1 AT1G03840 35.135 148 85 5 109 256 54 190 3.51e-21 94.0
MS.gene57304.t1 AT3G20880 37.107 159 93 6 127 283 258 411 4.84e-21 93.2
MS.gene57304.t1 AT1G55110 32.934 167 98 5 109 275 76 228 1.50e-20 92.0
MS.gene57304.t1 AT1G55110 32.934 167 98 5 109 275 76 228 1.50e-20 92.0
MS.gene57304.t1 AT1G55110 32.934 167 98 5 109 275 76 228 1.50e-20 92.0
MS.gene57304.t1 AT3G13810 35.135 148 86 4 109 256 83 220 5.93e-20 90.5
MS.gene57304.t1 AT3G13810 35.135 148 86 4 109 256 83 220 5.93e-20 90.5
MS.gene57304.t1 AT3G13810 35.135 148 86 4 109 256 78 215 7.47e-20 90.1
MS.gene57304.t1 AT3G13810 35.135 148 86 4 109 256 64 201 8.05e-20 90.1
MS.gene57304.t1 AT3G13810 35.135 148 86 4 109 256 84 221 1.05e-19 89.7
MS.gene57304.t1 AT3G13810 35.135 148 86 4 109 256 70 207 1.18e-19 89.7
MS.gene57304.t1 AT2G02080 30.526 190 111 8 101 286 61 233 1.60e-19 89.4
MS.gene57304.t1 AT2G02080 30.526 190 111 8 101 286 61 233 1.60e-19 89.4
MS.gene57304.t1 AT2G02080 30.526 190 111 8 101 286 61 233 1.60e-19 89.4
MS.gene57304.t1 AT2G02080 30.526 190 111 8 101 286 61 233 1.60e-19 89.4
MS.gene57304.t1 AT1G34790 35.329 167 97 8 118 278 137 298 3.27e-19 86.7
MS.gene57304.t1 AT4G02670 35.811 148 85 5 109 256 68 205 3.52e-19 87.8
MS.gene57304.t1 AT4G02670 35.811 148 85 5 109 256 66 203 3.82e-19 87.4
MS.gene57304.t1 AT2G02070 32.450 151 91 5 106 256 62 201 3.91e-19 88.2
MS.gene57304.t1 AT2G02070 32.450 151 91 5 106 256 62 201 3.91e-19 88.2
MS.gene57304.t1 AT1G14580 32.692 156 92 6 101 256 60 202 6.47e-19 87.4
MS.gene57304.t1 AT1G14580 32.692 156 92 6 101 256 60 202 6.47e-19 87.4
MS.gene57304.t1 AT1G14580 32.692 156 92 6 101 256 74 216 6.65e-19 87.4
MS.gene57304.t1 AT3G57670 35.862 145 86 6 127 269 219 358 3.30e-18 84.7
MS.gene57304.t1 AT2G02080 30.409 171 100 7 120 286 1 156 2.52e-17 82.4
MS.gene57304.t1 AT2G02080 30.409 171 100 7 120 286 1 156 2.52e-17 82.4
MS.gene57304.t1 AT1G25250 33.750 160 96 5 98 256 12 162 2.58e-17 82.0
MS.gene57304.t1 AT1G25250 35.570 149 86 5 109 256 46 185 2.77e-17 82.0
MS.gene57304.t1 AT2G01940 35.762 151 82 6 109 256 57 195 3.32e-17 82.0
MS.gene57304.t1 AT1G68130 35.570 149 85 5 109 256 54 192 7.84e-17 80.9
MS.gene57304.t1 AT2G01940 35.252 139 75 6 109 244 57 183 3.29e-14 73.2

Find 72 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGATTTGGATAAATTT+TGG 0.104736 4.1:+10369949 MS.gene57304:CDS
GGAGGAATTGTTATTGTTTC+TGG 0.118268 4.1:-10369261 None:intergenic
GGAAGGTTTCTTTGATGATT+TGG 0.263746 4.1:+10369938 MS.gene57304:CDS
CATGTCATCGTCAATGTAAT+TGG 0.286361 4.1:-10369316 None:intergenic
TCCACTTCTGCGAGATTTGC+GGG 0.292814 4.1:+10369409 MS.gene57304:CDS
TGCGTCGAGTTCCACAATTT+TGG 0.303992 4.1:-10369364 None:intergenic
ATGAAGGTTGCAAACGTAAC+AGG 0.321705 4.1:+10369565 MS.gene57304:CDS
GACAATGACTTCTCTTGAAA+TGG 0.326614 4.1:-10369635 None:intergenic
TCTAGGAAGGAGAAATTGTT+TGG 0.374626 4.1:+10369780 MS.gene57304:CDS
GACGAATTGTGGAGGAGATT+TGG 0.390719 4.1:-10369200 None:intergenic
AATCCATTTCGGTACTTAGT+TGG 0.394568 4.1:-10369101 None:intergenic
GAGGACTGTGTTTGTTTGAA+TGG 0.398093 4.1:-10369148 None:intergenic
ATCCATTTCGGTACTTAGTT+GGG 0.403084 4.1:-10369100 None:intergenic
TGTGTTTGTTTGAATGGATT+GGG 0.410517 4.1:-10369142 None:intergenic
CTGTGTTTGTTTGAATGGAT+TGG 0.411205 4.1:-10369143 None:intergenic
TGATTGCATGGATACGTTAC+CGG 0.422874 4.1:+10369917 MS.gene57304:CDS
TTTGGAATGGTAGTTATGAA+TGG 0.430613 4.1:-10369346 None:intergenic
GACGGCGGCGCCGGCAGAAG+AGG 0.442327 4.1:+10369863 MS.gene57304:CDS
TTACGTTTGCAACCTTCATA+AGG 0.442930 4.1:-10369561 None:intergenic
GCTTTGAATAGAATCCATTT+CGG 0.442981 4.1:-10369112 None:intergenic
CTCCCAACTAAGTACCGAAA+TGG 0.446469 4.1:+10369098 MS.gene57304:CDS
TTGGAATGGTAGTTATGAAT+GGG 0.447738 4.1:-10369345 None:intergenic
GAAGTTCAATCCGTTGAAAT+CGG 0.453409 4.1:+10369596 MS.gene57304:CDS
GGACACGTGGAGCGGTTTGA+AGG 0.462859 4.1:+10369801 MS.gene57304:CDS
TTCTGCGAGATTTGCGGGAA+AGG 0.464202 4.1:+10369414 MS.gene57304:CDS
TTCCACTTCTGCGAGATTTG+CGG 0.470603 4.1:+10369408 MS.gene57304:CDS
AATTGTGGAGGAGATTTGGT+TGG 0.477694 4.1:-10369196 None:intergenic
TAACTACCATTCCAAAATTG+TGG 0.494523 4.1:+10369353 MS.gene57304:CDS
GGAAAAGCAAGCGCGTTTAA+CGG 0.496000 4.1:+10369521 MS.gene57304:CDS
AAAATCAATGACGGCGGCGC+CGG 0.497008 4.1:+10369854 MS.gene57304:CDS
CCCACACCTTCCTCTTCTGC+CGG 0.506138 4.1:-10369873 None:intergenic
TTTCGGTACTTAGTTGGGAG+AGG 0.518556 4.1:-10369095 None:intergenic
GTCGAGTATAACTCGGTTGG+AGG 0.524381 4.1:-10369279 None:intergenic
AAATCATCAAAGAAACCTTC+CGG 0.527715 4.1:-10369936 None:intergenic
CCGGCGGTTGTTGAAGAGAA+AGG 0.528093 4.1:+10369831 MS.gene57304:CDS
GACGAAGGAAAATGATTGCA+TGG 0.537494 4.1:+10369905 MS.gene57304:CDS
TCCCGCAAATCTCGCAGAAG+TGG 0.537900 4.1:-10369410 None:intergenic
AAACAGAACACCGATTTCAA+CGG 0.538702 4.1:-10369606 None:intergenic
GAGTCACGTGAAACAGTGTA+GGG 0.546406 4.1:+10369719 MS.gene57304:CDS
GATGATGACTTGACGAATTG+TGG 0.554147 4.1:-10369211 None:intergenic
TGTTATTGTTTCTGGACAAG+TGG 0.555781 4.1:-10369253 None:intergenic
GGAGAAATTGTTTGGACACG+TGG 0.562238 4.1:+10369788 MS.gene57304:CDS
CAATTACATTGACGATGACA+TGG 0.570490 4.1:+10369317 MS.gene57304:CDS
CGAAAACTCACACGTGCGAT+CGG 0.572334 4.1:+10369658 MS.gene57304:CDS
CTCACACGTGCGATCGGTGT+CGG 0.577837 4.1:+10369664 MS.gene57304:CDS
CGTATGCACATGCGCGCGCA+CGG 0.585406 4.1:+10369459 MS.gene57304:CDS
CCTTTCTCTTCAACAACCGC+CGG 0.591632 4.1:-10369831 None:intergenic
TGCATGGATACGTTACCGGA+AGG 0.593308 4.1:+10369921 MS.gene57304:CDS
GCCGGCAGAAGAGGAAGGTG+TGG 0.596313 4.1:+10369872 MS.gene57304:CDS
AGAGTCACGTGAAACAGTGT+AGG 0.598901 4.1:+10369718 MS.gene57304:CDS
GCGGCGCCGGCAGAAGAGGA+AGG 0.609998 4.1:+10369867 MS.gene57304:CDS
GCGCGCGCATGTGCATACGC+AGG 0.610043 4.1:-10369455 None:intergenic
GCGGTTTGAAGGACACTCGC+CGG 0.611639 4.1:+10369812 MS.gene57304:CDS
CCTGTCGAGTATAACTCGGT+TGG 0.613205 4.1:-10369282 None:intergenic
CCAACCGAGTTATACTCGAC+AGG 0.616167 4.1:+10369282 MS.gene57304:CDS
CCGGCAGAAGAGGAAGGTGT+GGG 0.619763 4.1:+10369873 MS.gene57304:CDS
TCCACGTGGAAGTGTTCGTG+TGG 0.623338 4.1:+10369747 MS.gene57304:CDS
ACCACCTGTCGAGTATAACT+CGG 0.632991 4.1:-10369286 None:intergenic
ATGAAGCGTTACGTAGCGTG+AGG 0.636493 4.1:+10369499 MS.gene57304:CDS
AATTGTGGAACTCGACGCAG+TGG 0.638379 4.1:+10369368 MS.gene57304:CDS
TTTCTCCTTCCTAGAAAACG+TGG 0.641293 4.1:-10369772 None:intergenic
AATTGTTTGGACACGTGGAG+CGG 0.644804 4.1:+10369793 MS.gene57304:CDS
GTTTGAAGGACACTCGCCGG+CGG 0.649562 4.1:+10369815 MS.gene57304:CDS
ACACGTGCGATCGGTGTCGG+AGG 0.660805 4.1:+10369667 MS.gene57304:CDS
AGAGAAAGGAAAATCAATGA+CGG 0.662591 4.1:+10369845 MS.gene57304:CDS
TGAAGCGTTACGTAGCGTGA+GGG 0.667496 4.1:+10369500 MS.gene57304:CDS
GAAAGGAAAATCAATGACGG+CGG 0.669060 4.1:+10369848 MS.gene57304:CDS
ACCGAGTTATACTCGACAGG+TGG 0.698259 4.1:+10369285 MS.gene57304:CDS
AGTGTAGGGGAGAGTCCACG+TGG 0.705085 4.1:+10369733 MS.gene57304:CDS
GATGACTTGACGAATTGTGG+AGG 0.731309 4.1:-10369208 None:intergenic
AGTCACGTGAAACAGTGTAG+GGG 0.737402 4.1:+10369720 MS.gene57304:CDS
TCCACACGAACACTTCCACG+TGG 0.747159 4.1:-10369748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATGATTTGGATAAATTTT+GGG + chr4.1:10369950-10369969 MS.gene57304:CDS 20.0%
!!! TTGATGATTTGGATAAATTT+TGG + chr4.1:10369949-10369968 MS.gene57304:CDS 20.0%
AAATCATCAAAGAAACCTTC+CGG - chr4.1:10369939-10369958 None:intergenic 30.0%
AGAGAAAGGAAAATCAATGA+CGG + chr4.1:10369845-10369864 MS.gene57304:CDS 30.0%
TAACTACCATTCCAAAATTG+TGG + chr4.1:10369353-10369372 MS.gene57304:CDS 30.0%
TTGGAATGGTAGTTATGAAT+GGG - chr4.1:10369348-10369367 None:intergenic 30.0%
! GCTTTGAATAGAATCCATTT+CGG - chr4.1:10369115-10369134 None:intergenic 30.0%
! TGTGTTTGTTTGAATGGATT+GGG - chr4.1:10369145-10369164 None:intergenic 30.0%
! TTTGGAATGGTAGTTATGAA+TGG - chr4.1:10369349-10369368 None:intergenic 30.0%
!!! AGTGAGTCTAAGTTTTGTTT+GGG - chr4.1:10369174-10369193 None:intergenic 30.0%
AATCCATTTCGGTACTTAGT+TGG - chr4.1:10369104-10369123 None:intergenic 35.0%
ATCCATTTCGGTACTTAGTT+GGG - chr4.1:10369103-10369122 None:intergenic 35.0%
CAATTACATTGACGATGACA+TGG + chr4.1:10369317-10369336 MS.gene57304:CDS 35.0%
CATGTCATCGTCAATGTAAT+TGG - chr4.1:10369319-10369338 None:intergenic 35.0%
CTGTGTTTGTTTGAATGGAT+TGG - chr4.1:10369146-10369165 None:intergenic 35.0%
GAAGTTCAATCCGTTGAAAT+CGG + chr4.1:10369596-10369615 MS.gene57304:CDS 35.0%
GACAATGACTTCTCTTGAAA+TGG - chr4.1:10369638-10369657 None:intergenic 35.0%
TCTAGGAAGGAGAAATTGTT+TGG + chr4.1:10369780-10369799 MS.gene57304:CDS 35.0%
TTACGTTTGCAACCTTCATA+AGG - chr4.1:10369564-10369583 None:intergenic 35.0%
! CGATTTTCTTGTCCTTATGA+AGG + chr4.1:10369549-10369568 MS.gene57304:CDS 35.0%
! GGAAGGTTTCTTTGATGATT+TGG + chr4.1:10369938-10369957 MS.gene57304:CDS 35.0%
! GGAGGAATTGTTATTGTTTC+TGG - chr4.1:10369264-10369283 None:intergenic 35.0%
!! AAACAGAACACCGATTTCAA+CGG - chr4.1:10369609-10369628 None:intergenic 35.0%
!! TGTTATTGTTTCTGGACAAG+TGG - chr4.1:10369256-10369275 None:intergenic 35.0%
!!! GAGTGAGTCTAAGTTTTGTT+TGG - chr4.1:10369175-10369194 None:intergenic 35.0%
!!! GTGAGTCTAAGTTTTGTTTG+GGG - chr4.1:10369173-10369192 None:intergenic 35.0%
ATGAAGGTTGCAAACGTAAC+AGG + chr4.1:10369565-10369584 MS.gene57304:CDS 40.0%
GAAAGGAAAATCAATGACGG+CGG + chr4.1:10369848-10369867 MS.gene57304:CDS 40.0%
GACGAAGGAAAATGATTGCA+TGG + chr4.1:10369905-10369924 MS.gene57304:CDS 40.0%
GAGGACTGTGTTTGTTTGAA+TGG - chr4.1:10369151-10369170 None:intergenic 40.0%
GATGATGACTTGACGAATTG+TGG - chr4.1:10369214-10369233 None:intergenic 40.0%
TGATTGCATGGATACGTTAC+CGG + chr4.1:10369917-10369936 MS.gene57304:CDS 40.0%
TTTCTCCTTCCTAGAAAACG+TGG - chr4.1:10369775-10369794 None:intergenic 40.0%
! AATTGTGGAGGAGATTTGGT+TGG - chr4.1:10369199-10369218 None:intergenic 40.0%
! TGTGGGTAGATTTTTGACGA+AGG + chr4.1:10369890-10369909 MS.gene57304:CDS 40.0%
!! CGAGTTCCACAATTTTGGAA+TGG - chr4.1:10369362-10369381 None:intergenic 40.0%
!! TTAGTTGGGAGAGGTTTTGA+AGG - chr4.1:10369089-10369108 None:intergenic 40.0%
!!! AGTCTAAGTTTTGTTTGGGG+AGG - chr4.1:10369170-10369189 None:intergenic 40.0%
!!! TAGTTGGGAGAGGTTTTGAA+GGG - chr4.1:10369088-10369107 None:intergenic 40.0%
AATTGTTTGGACACGTGGAG+CGG + chr4.1:10369793-10369812 MS.gene57304:CDS 45.0%
ACCACCTGTCGAGTATAACT+CGG - chr4.1:10369289-10369308 None:intergenic 45.0%
AGAGTCACGTGAAACAGTGT+AGG + chr4.1:10369718-10369737 MS.gene57304:CDS 45.0%
AGTCACGTGAAACAGTGTAG+GGG + chr4.1:10369720-10369739 MS.gene57304:CDS 45.0%
GACGAATTGTGGAGGAGATT+TGG - chr4.1:10369203-10369222 None:intergenic 45.0%
GAGTCACGTGAAACAGTGTA+GGG + chr4.1:10369719-10369738 MS.gene57304:CDS 45.0%
GATGACTTGACGAATTGTGG+AGG - chr4.1:10369211-10369230 None:intergenic 45.0%
GGAAAAGCAAGCGCGTTTAA+CGG + chr4.1:10369521-10369540 MS.gene57304:CDS 45.0%
GGAGAAATTGTTTGGACACG+TGG + chr4.1:10369788-10369807 MS.gene57304:CDS 45.0%
TTCCACTTCTGCGAGATTTG+CGG + chr4.1:10369408-10369427 MS.gene57304:CDS 45.0%
TTTCGGTACTTAGTTGGGAG+AGG - chr4.1:10369098-10369117 None:intergenic 45.0%
! TGCGTCGAGTTCCACAATTT+TGG - chr4.1:10369367-10369386 None:intergenic 45.0%
!! CTCCCAACTAAGTACCGAAA+TGG + chr4.1:10369098-10369117 MS.gene57304:CDS 45.0%
!! TGGAACCACGTTTTCTAGGA+AGG + chr4.1:10369767-10369786 MS.gene57304:CDS 45.0%
!!! AGTTGGGAGAGGTTTTGAAG+GGG - chr4.1:10369087-10369106 None:intergenic 45.0%
AATTGTGGAACTCGACGCAG+TGG + chr4.1:10369368-10369387 MS.gene57304:CDS 50.0%
ACCGAGTTATACTCGACAGG+TGG + chr4.1:10369285-10369304 MS.gene57304:CDS 50.0%
CCAACCGAGTTATACTCGAC+AGG + chr4.1:10369282-10369301 MS.gene57304:CDS 50.0%
CCTGTCGAGTATAACTCGGT+TGG - chr4.1:10369285-10369304 None:intergenic 50.0%
CCTTTCTCTTCAACAACCGC+CGG - chr4.1:10369834-10369853 None:intergenic 50.0%
CGAAAACTCACACGTGCGAT+CGG + chr4.1:10369658-10369677 MS.gene57304:CDS 50.0%
GTCGAGTATAACTCGGTTGG+AGG - chr4.1:10369282-10369301 None:intergenic 50.0%
TCCACTTCTGCGAGATTTGC+GGG + chr4.1:10369409-10369428 MS.gene57304:CDS 50.0%
TGCATGGATACGTTACCGGA+AGG + chr4.1:10369921-10369940 MS.gene57304:CDS 50.0%
TTCTGCGAGATTTGCGGGAA+AGG + chr4.1:10369414-10369433 MS.gene57304:CDS 50.0%
! ATGAAGCGTTACGTAGCGTG+AGG + chr4.1:10369499-10369518 MS.gene57304:CDS 50.0%
! CGATCGCACGTGTGAGTTTT+CGG - chr4.1:10369660-10369679 None:intergenic 50.0%
! CGTGTGGAACCACGTTTTCT+AGG + chr4.1:10369763-10369782 MS.gene57304:CDS 50.0%
! GAAGAGTTTTGCGGTGGTGT+CGG + chr4.1:10369689-10369708 MS.gene57304:CDS 50.0%
! GTGTCGGAGGAAGAGTTTTG+CGG + chr4.1:10369680-10369699 MS.gene57304:CDS 50.0%
! TGAAGCGTTACGTAGCGTGA+GGG + chr4.1:10369500-10369519 MS.gene57304:CDS 50.0%
AAAATCAATGACGGCGGCGC+CGG + chr4.1:10369854-10369873 MS.gene57304:CDS 55.0%
CCGGCGGTTGTTGAAGAGAA+AGG + chr4.1:10369831-10369850 MS.gene57304:CDS 55.0%
TCCACACGAACACTTCCACG+TGG - chr4.1:10369751-10369770 None:intergenic 55.0%
TCCCGCAAATCTCGCAGAAG+TGG - chr4.1:10369413-10369432 None:intergenic 55.0%
! TCGGAGGAAGAGTTTTGCGG+TGG + chr4.1:10369683-10369702 MS.gene57304:CDS 55.0%
!! TCCACGTGGAAGTGTTCGTG+TGG + chr4.1:10369747-10369766 MS.gene57304:CDS 55.0%
AGTGTAGGGGAGAGTCCACG+TGG + chr4.1:10369733-10369752 MS.gene57304:CDS 60.0%
CCCACACCTTCCTCTTCTGC+CGG - chr4.1:10369876-10369895 None:intergenic 60.0%
CTCACACGTGCGATCGGTGT+CGG + chr4.1:10369664-10369683 MS.gene57304:CDS 60.0%
GCGGTTTGAAGGACACTCGC+CGG + chr4.1:10369812-10369831 MS.gene57304:CDS 60.0%
GGACACGTGGAGCGGTTTGA+AGG + chr4.1:10369801-10369820 MS.gene57304:CDS 60.0%
GTTTGAAGGACACTCGCCGG+CGG + chr4.1:10369815-10369834 MS.gene57304:CDS 60.0%
! CCGGCAGAAGAGGAAGGTGT+GGG + chr4.1:10369873-10369892 MS.gene57304:CDS 60.0%
CGTATGCACATGCGCGCGCA+CGG + chr4.1:10369459-10369478 MS.gene57304:CDS 65.0%
GCCGGCAGAAGAGGAAGGTG+TGG + chr4.1:10369872-10369891 MS.gene57304:CDS 65.0%
!! ACACGTGCGATCGGTGTCGG+AGG + chr4.1:10369667-10369686 MS.gene57304:CDS 65.0%
GCGCGCGCATGTGCATACGC+AGG - chr4.1:10369458-10369477 None:intergenic 70.0%
!! GCGGCGCCGGCAGAAGAGGA+AGG + chr4.1:10369867-10369886 MS.gene57304:CDS 75.0%
!!! GACGGCGGCGCCGGCAGAAG+AGG + chr4.1:10369863-10369882 MS.gene57304:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 10369039 10369977 10369039 ID=MS.gene57304
chr4.1 mRNA 10369039 10369977 10369039 ID=MS.gene57304.t1;Parent=MS.gene57304
chr4.1 exon 10369039 10369977 10369039 ID=MS.gene57304.t1.exon1;Parent=MS.gene57304.t1
chr4.1 CDS 10369039 10369977 10369039 ID=cds.MS.gene57304.t1;Parent=MS.gene57304.t1
Gene Sequence

>MS.gene57304

ATGCAAAATCTCACTGAAATTACTCATCAAACAAATGCAAATATTCCCCTTCAAAACCTCTCCCAACTAAGTACCGAAATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACAGTCCTCCCCAAACAAAACTTAGACTCACTCTCCAACCAAATCTCCTCCACAATTCGTCAAGTCATCATCAACGCAACTGCTCTTCTCGCCACTTGTCCAGAAACAATAACAATTCCTCCAACCGAGTTATACTCGACAGGTGGTGAGAAAACCAATTACATTGACGATGACATGGCAAATCCCATTCATAACTACCATTCCAAAATTGTGGAACTCGACGCAGTGGAACTGCTTGCGAAGCACTTCCACTTCTGCGAGATTTGCGGGAAAGGTTTCACGCGCGATGCAAACCTGCGTATGCACATGCGCGCGCACGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAGCGCGTTTAACGGCGACGCGATTTTCTTGTCCTTATGAAGGTTGCAAACGTAACAGGTTACACAAGAAGTTCAATCCGTTGAAATCGGTGTTCTGTTTGAAGAACCATTTCAAGAGAAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCGGTTGTTGAAGAGAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGGAAGGTGTGGGTAGATTTTTGACGAAGGAAAATGATTGCATGGATACGTTACCGGAAGGTTTCTTTGATGATTTGGATAAATTTTGGGTTTGA
Protein sequence

>MS.gene57304.t1

MQNLTEITHQTNANIPLQNLSQLSTEMDSIQSFISQSIQTNTVLPKQNLDSLSNQISSTIRQVIINATALLATCPETITIPPTELYSTGGEKTNYIDDDMANPIHNYHSKIVELDAVELLAKHFHFCEICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQARLTATRFSCPYEGCKRNRLHKKFNPLKSVFCLKNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEEKGKSMTAAPAEEEGVGRFLTKENDCMDTLPEGFFDDLDKFWV