Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57451.t1 | AES65156.2 | 88 | 1201 | 77 | 5 | 1 | 1149 | 26 | 1211 | 0.00E+00 | 1986.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57451.t1 | F4K1J4 | 32.7 | 1281 | 663 | 28 | 38 | 1147 | 115 | 1367 | 3.2e-140 | 501.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57451.t1 | G7IG27 | 88.0 | 1201 | 77 | 5 | 1 | 1149 | 26 | 1211 | 0.0e+00 | 1986.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene57451.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57451.t1 | MTR_2g036060 | 88.177 | 1201 | 75 | 6 | 1 | 1149 | 1 | 1186 | 0.0 | 2105 |
MS.gene57451.t1 | MTR_2g036060 | 88.177 | 1201 | 75 | 6 | 1 | 1149 | 26 | 1211 | 0.0 | 2104 |
MS.gene57451.t1 | MTR_7g021365 | 48.810 | 84 | 42 | 1 | 1045 | 1127 | 904 | 987 | 4.15e-17 | 87.8 |
MS.gene57451.t1 | MTR_8g027725 | 35.135 | 148 | 80 | 3 | 981 | 1127 | 755 | 887 | 4.86e-16 | 84.0 |
MS.gene57451.t1 | MTR_8g027725 | 35.135 | 148 | 80 | 3 | 981 | 1127 | 740 | 872 | 4.98e-16 | 84.0 |
MS.gene57451.t1 | MTR_1g008230 | 45.349 | 86 | 46 | 1 | 1042 | 1127 | 610 | 694 | 2.15e-15 | 81.6 |
MS.gene57451.t1 | MTR_1g008230 | 45.349 | 86 | 46 | 1 | 1042 | 1127 | 888 | 972 | 2.46e-15 | 81.6 |
MS.gene57451.t1 | MTR_3g091310 | 48.148 | 81 | 41 | 1 | 1047 | 1127 | 922 | 1001 | 3.59e-15 | 81.3 |
MS.gene57451.t1 | MTR_3g091310 | 48.148 | 81 | 41 | 1 | 1047 | 1127 | 828 | 907 | 3.95e-15 | 81.3 |
MS.gene57451.t1 | MTR_1g012890 | 36.792 | 106 | 63 | 2 | 1046 | 1147 | 223 | 328 | 8.74e-14 | 74.7 |
MS.gene57451.t1 | MTR_7g117355 | 43.210 | 81 | 45 | 1 | 1047 | 1127 | 823 | 902 | 1.78e-13 | 75.9 |
MS.gene57451.t1 | MTR_0071s0100 | 35.294 | 85 | 55 | 0 | 1044 | 1128 | 208 | 292 | 2.23e-12 | 70.9 |
MS.gene57451.t1 | MTR_1g098000 | 37.931 | 87 | 54 | 0 | 1042 | 1128 | 91 | 177 | 2.69e-12 | 71.2 |
MS.gene57451.t1 | MTR_1g098370 | 37.931 | 87 | 54 | 0 | 1042 | 1128 | 94 | 180 | 3.23e-12 | 70.9 |
MS.gene57451.t1 | MTR_1g012910 | 34.959 | 123 | 68 | 4 | 1017 | 1127 | 489 | 611 | 1.22e-11 | 69.3 |
MS.gene57451.t1 | MTR_1g012910 | 34.959 | 123 | 68 | 4 | 1017 | 1127 | 326 | 448 | 1.80e-11 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57451.t1 | AT5G42400 | 34.324 | 673 | 371 | 16 | 38 | 674 | 115 | 752 | 1.00e-92 | 326 |
MS.gene57451.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 708 | 1147 | 944 | 1350 | 1.61e-74 | 271 |
MS.gene57451.t1 | AT5G42400 | 34.324 | 673 | 371 | 16 | 38 | 674 | 115 | 752 | 1.00e-92 | 326 |
MS.gene57451.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 708 | 1147 | 944 | 1350 | 1.61e-74 | 271 |
MS.gene57451.t1 | AT5G42400 | 34.324 | 673 | 371 | 16 | 38 | 674 | 115 | 752 | 1.00e-92 | 326 |
MS.gene57451.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 708 | 1147 | 944 | 1350 | 1.61e-74 | 271 |
MS.gene57451.t1 | AT5G42400 | 34.324 | 673 | 371 | 16 | 38 | 674 | 115 | 752 | 1.00e-92 | 326 |
MS.gene57451.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 708 | 1147 | 944 | 1350 | 1.61e-74 | 271 |
MS.gene57451.t1 | AT5G42400 | 34.324 | 673 | 371 | 16 | 38 | 674 | 115 | 752 | 1.00e-92 | 326 |
MS.gene57451.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 708 | 1147 | 944 | 1350 | 1.61e-74 | 271 |
MS.gene57451.t1 | AT5G42400 | 34.324 | 673 | 371 | 16 | 38 | 674 | 115 | 752 | 1.00e-92 | 326 |
MS.gene57451.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 708 | 1147 | 944 | 1350 | 1.61e-74 | 271 |
MS.gene57451.t1 | AT5G42400 | 34.324 | 673 | 371 | 16 | 38 | 674 | 115 | 752 | 1.00e-92 | 326 |
MS.gene57451.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 708 | 1147 | 944 | 1350 | 1.61e-74 | 271 |
MS.gene57451.t1 | AT5G42400 | 34.324 | 673 | 371 | 16 | 38 | 674 | 115 | 752 | 1.00e-92 | 326 |
MS.gene57451.t1 | AT5G42400 | 42.544 | 456 | 197 | 11 | 708 | 1147 | 944 | 1350 | 1.61e-74 | 271 |
MS.gene57451.t1 | AT1G05830 | 47.619 | 105 | 50 | 2 | 1025 | 1128 | 902 | 1002 | 6.67e-19 | 93.6 |
MS.gene57451.t1 | AT1G05830 | 47.619 | 105 | 50 | 2 | 1025 | 1128 | 902 | 1002 | 6.67e-19 | 93.6 |
MS.gene57451.t1 | AT1G05830 | 47.619 | 105 | 50 | 2 | 1025 | 1128 | 902 | 1002 | 6.67e-19 | 93.6 |
MS.gene57451.t1 | AT1G05830 | 47.619 | 105 | 50 | 2 | 1025 | 1128 | 902 | 1002 | 6.67e-19 | 93.6 |
MS.gene57451.t1 | AT2G31650 | 33.654 | 208 | 112 | 6 | 931 | 1127 | 788 | 980 | 1.49e-18 | 92.4 |
MS.gene57451.t1 | AT4G27910 | 49.383 | 81 | 40 | 1 | 1047 | 1127 | 886 | 965 | 4.34e-16 | 84.3 |
MS.gene57451.t1 | AT5G53430 | 48.780 | 82 | 41 | 1 | 1046 | 1127 | 901 | 981 | 9.47e-16 | 83.2 |
MS.gene57451.t1 | AT1G76710 | 48.571 | 70 | 36 | 0 | 1058 | 1127 | 101 | 170 | 2.64e-14 | 77.4 |
MS.gene57451.t1 | AT1G76710 | 48.571 | 70 | 36 | 0 | 1058 | 1127 | 101 | 170 | 2.68e-14 | 77.8 |
MS.gene57451.t1 | AT1G76710 | 48.571 | 70 | 36 | 0 | 1058 | 1127 | 101 | 170 | 2.84e-14 | 77.4 |
MS.gene57451.t1 | AT1G76710 | 48.571 | 70 | 36 | 0 | 1058 | 1127 | 101 | 170 | 2.84e-14 | 77.4 |
MS.gene57451.t1 | AT3G61740 | 34.194 | 155 | 79 | 4 | 984 | 1127 | 777 | 919 | 1.07e-13 | 76.6 |
MS.gene57451.t1 | AT3G61740 | 44.444 | 81 | 44 | 1 | 1047 | 1127 | 876 | 955 | 1.16e-13 | 76.3 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAGCATGTAACGTGTATT+TGG | 0.173701 | 2.4:+53238728 | None:intergenic |
TCTCCTAATAACATCAAAAT+TGG | 0.186129 | 2.4:-53244142 | MS.gene57451:CDS |
TTGGATTTATGAGGATAAAA+AGG | 0.186390 | 2.4:-53246751 | MS.gene57451:CDS |
AAGCCTGACCGTTCAAAATA+TGG | 0.229760 | 2.4:+53244594 | None:intergenic |
TTGCACGTTGAACAATAAAT+TGG | 0.240841 | 2.4:-53244757 | MS.gene57451:intron |
CCTACCATTTAGTTTCTCTT+TGG | 0.255660 | 2.4:+53242549 | None:intergenic |
ATCACCAACTCCATTGCTTT+TGG | 0.256607 | 2.4:+53244959 | None:intergenic |
GTGCTAACTTCGATACTTTC+TGG | 0.257191 | 2.4:+53242801 | None:intergenic |
GTGACATATTCTGTAATCTT+AGG | 0.262183 | 2.4:+53243552 | None:intergenic |
TGATGTTATTAGGAGATAAA+AGG | 0.264930 | 2.4:+53244149 | None:intergenic |
GGAAAGGCTAAGATGATTAA+AGG | 0.273433 | 2.4:-53242914 | MS.gene57451:CDS |
AGTGAAGGAAGGCACAAAAT+TGG | 0.287240 | 2.4:-53243161 | MS.gene57451:CDS |
TGCCTCAGTTACTTGTTTGC+TGG | 0.289840 | 2.4:+53242191 | None:intergenic |
TGTTGAGCTTGCTGCTGTTA+TGG | 0.293151 | 2.4:-53246999 | MS.gene57451:CDS |
GACTTTGTCATTGAGTATAT+TGG | 0.296267 | 2.4:-53241702 | MS.gene57451:CDS |
AAGTTAAGGAAAGATGTTTC+TGG | 0.308785 | 2.4:-53242983 | MS.gene57451:CDS |
GATTTGTGTCCTAGATCTAT+TGG | 0.317586 | 2.4:-53242138 | MS.gene57451:CDS |
CCATTTCAGAGTTGATTTCC+TGG | 0.317624 | 2.4:-53246707 | MS.gene57451:CDS |
TCCCATCTAGCACAACTTTA+CGG | 0.322868 | 2.4:+53244865 | None:intergenic |
TTGCTCCTCTTCTCAGGATA+TGG | 0.329993 | 2.4:-53247041 | MS.gene57451:CDS |
ATCTTCTACAACGGGCTTAG+AGG | 0.331336 | 2.4:+53243036 | None:intergenic |
GTCTTTCTGCAAGAACAAAT+AGG | 0.340439 | 2.4:-53241963 | MS.gene57451:CDS |
TCATTACACCCATGTGCAAT+TGG | 0.342636 | 2.4:+53244895 | None:intergenic |
ATCTCCAAAGAGAAACTAAA+TGG | 0.343265 | 2.4:-53242553 | MS.gene57451:intron |
TCACTAAATATGTCTTTCTC+TGG | 0.343385 | 2.4:+53243953 | None:intergenic |
TCCCGTAAAGTTGTGCTAGA+TGG | 0.346597 | 2.4:-53244867 | MS.gene57451:CDS |
TCTCTGGGGAAGGAATTAAT+TGG | 0.347161 | 2.4:+53243969 | None:intergenic |
TGTGAAACAGACTTTGAATC+AGG | 0.348335 | 2.4:+53246968 | None:intergenic |
TTGACAGATGATTGAGGCTT+AGG | 0.356307 | 2.4:+53244380 | None:intergenic |
CCCATCTAGCACAACTTTAC+GGG | 0.362728 | 2.4:+53244866 | None:intergenic |
TTCTGCTAAATCCAAGTCAT+TGG | 0.364175 | 2.4:-53242160 | MS.gene57451:CDS |
CCTGGAGGAAGAAGAAATAT+TGG | 0.364781 | 2.4:-53244409 | MS.gene57451:CDS |
AAGGAAGGCGCAGAAAGTTC+TGG | 0.365735 | 2.4:-53243124 | MS.gene57451:CDS |
GTTGTGCTAGATGGGATTAT+TGG | 0.365764 | 2.4:-53244858 | MS.gene57451:CDS |
CTGGCTAGTTTCATTCTTCA+AGG | 0.373079 | 2.4:+53242820 | None:intergenic |
CATTTGAATGATGCTACTTT+GGG | 0.377631 | 2.4:-53243226 | MS.gene57451:CDS |
GCATTTGAATGATGCTACTT+TGG | 0.382771 | 2.4:-53243227 | MS.gene57451:CDS |
ATCTCAGTTGTCAAATAGTA+AGG | 0.392242 | 2.4:-53241986 | MS.gene57451:CDS |
ATGGATGGGAATGGCATAAA+TGG | 0.394098 | 2.4:-53242095 | MS.gene57451:CDS |
TCTGAAAGTGCCTCAATTGA+AGG | 0.399512 | 2.4:-53241896 | MS.gene57451:intron |
CGGGATAATTTCTTCTCAAA+TGG | 0.406124 | 2.4:-53246882 | MS.gene57451:intron |
CAATATGAGAAGATGGGAAT+TGG | 0.406771 | 2.4:-53241011 | MS.gene57451:CDS |
TGACAAATTCTTGCGGTGAT+AGG | 0.407599 | 2.4:+53243075 | None:intergenic |
TCAGCATGTAACGTGTATTT+GGG | 0.407901 | 2.4:+53238729 | None:intergenic |
CCACAAGTAGAGCACGTGTC+AGG | 0.416866 | 2.4:-53242056 | MS.gene57451:CDS |
CCCGTTGTAGAAGATAATTC+AGG | 0.419889 | 2.4:-53243028 | MS.gene57451:CDS |
CCAGGAAATCAACTCTGAAA+TGG | 0.421721 | 2.4:+53246707 | None:intergenic |
GACAAATTGCTCCTCTTCTC+AGG | 0.422116 | 2.4:-53247047 | MS.gene57451:CDS |
TGTTCGAAGTGTTGTTGAAA+AGG | 0.422666 | 2.4:-53243999 | MS.gene57451:CDS |
ACAAAGTCCTCTGCTTCAAT+TGG | 0.428283 | 2.4:+53241717 | None:intergenic |
CGTATCTCAGAGATGGTTGC+TGG | 0.428715 | 2.4:-53243834 | MS.gene57451:CDS |
CATTAAGGAGCAGTTATATG+AGG | 0.431991 | 2.4:-53247230 | MS.gene57451:CDS |
CGACTGGGGTCTTGTTGCCT+TGG | 0.434606 | 2.4:-53241742 | MS.gene57451:CDS |
GTGAAGGAAGGCACAAAATT+GGG | 0.441161 | 2.4:-53243160 | MS.gene57451:CDS |
TTACATTCAACTGTTCTTGA+AGG | 0.443516 | 2.4:+53243576 | None:intergenic |
CCAATATTTCTTCTTCCTCC+AGG | 0.444169 | 2.4:+53244409 | None:intergenic |
CTAGCACATCCAATAGATCT+AGG | 0.445418 | 2.4:+53242129 | None:intergenic |
CTTCAAGGATAATTGATCAC+TGG | 0.445488 | 2.4:+53242835 | None:intergenic |
AGGTCCAGGGAAGGAGCCTT+TGG | 0.446348 | 2.4:-53243008 | MS.gene57451:CDS |
TTACCCCATGACCACGAGAC+TGG | 0.447116 | 2.4:+53243415 | None:intergenic |
TCAACGAATGTTAAGTCAGT+TGG | 0.448542 | 2.4:-53244548 | MS.gene57451:CDS |
CACTAAATATGTCTTTCTCT+GGG | 0.451270 | 2.4:+53243954 | None:intergenic |
AGGAGCCTTTGGCTAAGTTA+AGG | 0.452827 | 2.4:-53242997 | MS.gene57451:CDS |
CTGTTATTCAGACGGTGTTA+CGG | 0.453219 | 2.4:-53242692 | MS.gene57451:intron |
CCTGAATTATCTTCTACAAC+GGG | 0.456131 | 2.4:+53243028 | None:intergenic |
CCCGTAAAGTTGTGCTAGAT+GGG | 0.460102 | 2.4:-53244866 | MS.gene57451:CDS |
TAAGATGATTAAAGGGAAGA+AGG | 0.462336 | 2.4:-53242906 | MS.gene57451:CDS |
GGATACACAGGAAGCTCAAA+TGG | 0.462764 | 2.4:+53247187 | None:intergenic |
TTTATGTACAGTTGGCTCTC+AGG | 0.465791 | 2.4:-53244252 | MS.gene57451:intron |
TCTTTCTGCAAGAACAAATA+GGG | 0.465926 | 2.4:-53241962 | MS.gene57451:CDS |
AATTTCCAGTCTCGTGGTCA+TGG | 0.467079 | 2.4:-53243420 | MS.gene57451:CDS |
ATATAACTGCTCCTTAATGT+AGG | 0.467895 | 2.4:+53247234 | None:intergenic |
CATTACACCCATGTGCAATT+GGG | 0.471721 | 2.4:+53244896 | None:intergenic |
AGAATGCTGTTGGATTTATG+AGG | 0.473819 | 2.4:-53246760 | MS.gene57451:CDS |
GAAAGGCTAAGATGATTAAA+GGG | 0.477085 | 2.4:-53242913 | MS.gene57451:CDS |
CTGACACGTGCTCTACTTGT+GGG | 0.479131 | 2.4:+53242057 | None:intergenic |
TTAGCCAAAGGCTCCTTCCC+TGG | 0.479653 | 2.4:+53243004 | None:intergenic |
AATGATGCTACTTTGGGACT+AGG | 0.479668 | 2.4:-53243220 | MS.gene57451:CDS |
CCTGACACGTGCTCTACTTG+TGG | 0.480399 | 2.4:+53242056 | None:intergenic |
TGAGAGGATGTAACACCATC+TGG | 0.480990 | 2.4:+53242261 | None:intergenic |
TGGAGAATTAATTCGTCCTC+GGG | 0.481722 | 2.4:-53241682 | MS.gene57451:intron |
AGTTGGGAGGAGAATGCTGT+TGG | 0.481910 | 2.4:-53246770 | MS.gene57451:CDS |
AACATTCGTTGAAGACGGTC+TGG | 0.483791 | 2.4:+53244559 | None:intergenic |
CATTTCTTCCCAATTGCACA+TGG | 0.484082 | 2.4:-53244904 | MS.gene57451:CDS |
TGAGCTTCAATATGAGAAGA+TGG | 0.485383 | 2.4:-53241018 | MS.gene57451:CDS |
TCTTGCTGCAGCTGAGGGTG+CGG | 0.485924 | 2.4:-53241923 | MS.gene57451:CDS |
ATTGGGACTAGGAAAAGTTA+AGG | 0.486627 | 2.4:-53243143 | MS.gene57451:CDS |
CCTGTGTATCCTGTCATCAA+TGG | 0.486921 | 2.4:-53247175 | MS.gene57451:CDS |
TCTTCTCAGGATATGGTACA+TGG | 0.487169 | 2.4:-53247034 | MS.gene57451:CDS |
ACATCGCCGTTAACATTTGA+CGG | 0.488330 | 2.4:+53247382 | None:intergenic |
CTCTGCTTCAATTGGCTCCA+AGG | 0.488706 | 2.4:+53241725 | None:intergenic |
TTACTATTTGACAACTGAGA+TGG | 0.489885 | 2.4:+53241988 | None:intergenic |
AAGCTCAAATGGCAAGAATC+CGG | 0.491377 | 2.4:+53247198 | None:intergenic |
TCTTCAATCACCTTCAATTG+AGG | 0.493337 | 2.4:+53241886 | None:intergenic |
TTCAAGGATAATTGATCACT+GGG | 0.494291 | 2.4:+53242836 | None:intergenic |
GTAGAAGATAATTCAGGTCC+AGG | 0.494526 | 2.4:-53243022 | MS.gene57451:CDS |
TGTGCTAGGACTTCTATTGA+TGG | 0.499906 | 2.4:-53242114 | MS.gene57451:CDS |
AAGATATCCATGGTGGTGCC+AGG | 0.501577 | 2.4:+53246689 | None:intergenic |
CAGACTCGATGACGGTTATG+TGG | 0.501932 | 2.4:-53240973 | MS.gene57451:intron |
ATTATTGTGCCATTGATGAC+AGG | 0.502716 | 2.4:+53247166 | None:intergenic |
TTATATGAGGGTTTAACTAC+CGG | 0.503467 | 2.4:-53247217 | MS.gene57451:CDS |
TCTGGAGTTCCTCTAGCGAT+TGG | 0.504197 | 2.4:-53243106 | MS.gene57451:CDS |
CACTCACACCAGGGTTTACG+TGG | 0.504558 | 2.4:-53247325 | MS.gene57451:CDS |
AACCGTCATCGAGTCTGAAA+AGG | 0.508500 | 2.4:+53240979 | None:intergenic |
AACCCGGTGGAAACATGGTC+AGG | 0.510121 | 2.4:+53247109 | None:intergenic |
AGCAGCCCGTCAAATGTTAA+CGG | 0.511006 | 2.4:-53247388 | MS.gene57451:CDS |
ATTTCCAGTCTCGTGGTCAT+GGG | 0.513236 | 2.4:-53243419 | MS.gene57451:CDS |
CATCGCCGTTAACATTTGAC+GGG | 0.515981 | 2.4:+53247383 | None:intergenic |
TAACCTTCTTGCTGCAGCTG+AGG | 0.516247 | 2.4:-53241929 | MS.gene57451:CDS |
TTGGAGAATTAATTCGTCCT+CGG | 0.516910 | 2.4:-53241683 | MS.gene57451:CDS |
TAATATTTCACACTCACACC+AGG | 0.517564 | 2.4:-53247335 | MS.gene57451:CDS |
AGCCTGACCGTTCAAAATAT+GGG | 0.519429 | 2.4:+53244595 | None:intergenic |
CTCTTTGGAGATATGACCAG+TGG | 0.519488 | 2.4:+53242564 | None:intergenic |
AATGTGCGGTCCCTACATTA+AGG | 0.519889 | 2.4:-53247245 | MS.gene57451:CDS |
CAAAACCTTTGCGGGATGAG+AGG | 0.521228 | 2.4:+53242245 | None:intergenic |
TGAGCTTAAATCCATGTGAC+TGG | 0.523764 | 2.4:+53246916 | None:intergenic |
GTTGATGCTGATAACCAGTC+TGG | 0.526674 | 2.4:-53244208 | MS.gene57451:CDS |
ATGATGAAGTTCTAAAAGAC+TGG | 0.526710 | 2.4:-53243503 | MS.gene57451:CDS |
AACCTTCTTGCTGCAGCTGA+GGG | 0.528246 | 2.4:-53241928 | MS.gene57451:CDS |
ACCAGTGGTCTTCCTCTGAA+TGG | 0.528448 | 2.4:+53242579 | None:intergenic |
ATGCAAACCCGGTGGAAACA+TGG | 0.528796 | 2.4:+53247104 | None:intergenic |
CTGTTGCAATAACTCCAGAC+TGG | 0.529624 | 2.4:+53244194 | None:intergenic |
CGGGTTTGCATATTTGAGCA+TGG | 0.532298 | 2.4:-53247092 | MS.gene57451:CDS |
AGGTGCAGACTCACTTGGAA+TGG | 0.535622 | 2.4:+53244619 | None:intergenic |
TATCCTGACCATGTTTCCAC+CGG | 0.536239 | 2.4:-53247112 | MS.gene57451:CDS |
ATCATTCCTTGCAAGTCATG+TGG | 0.540334 | 2.4:-53244472 | MS.gene57451:CDS |
TATAACTGCTCCTTAATGTA+GGG | 0.545813 | 2.4:+53247235 | None:intergenic |
TAGGACTTCTATTGATGGAT+GGG | 0.547014 | 2.4:-53242109 | MS.gene57451:CDS |
CACCCTCAGCTGCAGCAAGA+AGG | 0.548860 | 2.4:+53241926 | None:intergenic |
CTAGGACTTCTATTGATGGA+TGG | 0.550118 | 2.4:-53242110 | MS.gene57451:CDS |
GAGATTGATGACCTACCACC+TGG | 0.551551 | 2.4:-53243651 | MS.gene57451:CDS |
AAAGTAACTGCTACTAAATG+TGG | 0.552941 | 2.4:-53242935 | MS.gene57451:CDS |
TGGGAAGGTGCAGACTCACT+TGG | 0.553963 | 2.4:+53244614 | None:intergenic |
CACAAGTAGAGCACGTGTCA+GGG | 0.556561 | 2.4:-53242055 | MS.gene57451:CDS |
AAAATTGGAAATACAACAGA+AGG | 0.556903 | 2.4:-53244127 | MS.gene57451:CDS |
ATATGGTACATGGGCAAGAT+CGG | 0.558546 | 2.4:-53247024 | MS.gene57451:CDS |
ATTAAGGAGCAGTTATATGA+GGG | 0.558740 | 2.4:-53247229 | MS.gene57451:CDS |
TTTGGAATCTGATCCACAGA+TGG | 0.560189 | 2.4:+53244977 | None:intergenic |
TCTTTCCTTAACTTAGCCAA+AGG | 0.562647 | 2.4:+53242992 | None:intergenic |
GATTCATTGACAGATGATTG+AGG | 0.563560 | 2.4:+53244374 | None:intergenic |
GTGTGGACATTTAAATGATG+TGG | 0.563832 | 2.4:-53243685 | MS.gene57451:CDS |
GAAGTCGTTCAGTGCAAACA+AGG | 0.566037 | 2.4:-53243251 | MS.gene57451:CDS |
TAAGCTCAGAGGCATTCAGC+GGG | 0.569394 | 2.4:-53246901 | MS.gene57451:CDS |
AATATGTCTTTCTCTGGGGA+AGG | 0.571769 | 2.4:+53243959 | None:intergenic |
GACACGCATTCTTGAAAGTG+TGG | 0.572215 | 2.4:-53244065 | MS.gene57451:CDS |
CACTAAGGAATCCAGTCACA+TGG | 0.572472 | 2.4:-53246927 | MS.gene57451:CDS |
AGGACACAAATCCAATGACT+TGG | 0.572553 | 2.4:+53242149 | None:intergenic |
AACTGCTACTAAATGTGGAA+AGG | 0.572985 | 2.4:-53242930 | MS.gene57451:CDS |
AAATGATGTGGTTGATGAAG+AGG | 0.573878 | 2.4:-53243673 | MS.gene57451:CDS |
ACCTGAATTATCTTCTACAA+CGG | 0.574706 | 2.4:+53243027 | None:intergenic |
GACTTAACATTCGTTGAAGA+CGG | 0.575920 | 2.4:+53244554 | None:intergenic |
GAAGGCACAAAATTGGGACT+AGG | 0.577142 | 2.4:-53243154 | MS.gene57451:CDS |
CAGCAACCATCTCTGAGATA+CGG | 0.578990 | 2.4:+53243835 | None:intergenic |
TTAGGAGATAAAAGGAACTC+AGG | 0.580174 | 2.4:+53244157 | None:intergenic |
TACTGTTTAAAATAATTCAA+CGG | 0.581012 | 2.4:+53247133 | None:intergenic |
CTTTCCGTGACAAATTCTTG+CGG | 0.581755 | 2.4:+53243068 | None:intergenic |
AGATAATTCAGGTCCAGGGA+AGG | 0.585334 | 2.4:-53243017 | MS.gene57451:CDS |
CTAGATCTATTGGATGTGCT+AGG | 0.585787 | 2.4:-53242128 | MS.gene57451:CDS |
CTTGGAGCCAATTGAAGCAG+AGG | 0.586421 | 2.4:-53241724 | MS.gene57451:CDS |
ATTTATTAACCATTCTTGTG+AGG | 0.586731 | 2.4:-53240302 | MS.gene57451:intron |
CATGCTCAAATATGCAAACC+CGG | 0.588163 | 2.4:+53247093 | None:intergenic |
AGAAGGATACATCTTCTAAG+AGG | 0.588713 | 2.4:-53242889 | MS.gene57451:CDS |
GATTCCAAAAGCAATGGAGT+TGG | 0.589499 | 2.4:-53244963 | MS.gene57451:CDS |
GAGCTTCAATATGAGAAGAT+GGG | 0.589585 | 2.4:-53241017 | MS.gene57451:CDS |
TGAGCTTCACTGCTCTGCAA+AGG | 0.589761 | 2.4:-53244038 | MS.gene57451:CDS |
AAAAGAAAGCATCAGCCAGA+TGG | 0.590108 | 2.4:-53242276 | MS.gene57451:CDS |
ACTGTTACTGTATACTACAC+TGG | 0.591630 | 2.4:-53238696 | MS.gene57451:CDS |
ATATGTCAATGACTGCACTA+AGG | 0.592044 | 2.4:-53246942 | MS.gene57451:CDS |
TGATAATAGTGTTGGCGTGA+AGG | 0.592885 | 2.4:-53242629 | MS.gene57451:CDS |
ATGTACCATATCCTGAGAAG+AGG | 0.596505 | 2.4:+53247036 | None:intergenic |
TACATCCTCTCATCCCGCAA+AGG | 0.597566 | 2.4:-53242250 | MS.gene57451:CDS |
AAAGGAGCAAGATACACGAC+TGG | 0.597716 | 2.4:-53241758 | MS.gene57451:CDS |
TTGAATCTTCAAGATATCCA+TGG | 0.599943 | 2.4:+53246679 | None:intergenic |
AAAGCGTTTCAAGAATTGTG+TGG | 0.600656 | 2.4:-53243702 | MS.gene57451:CDS |
TGCATTCCACATGACTTGCA+AGG | 0.600696 | 2.4:+53244466 | None:intergenic |
CTTCTATTGATGGATGGGAA+TGG | 0.601171 | 2.4:-53242104 | MS.gene57451:CDS |
GCATGGATTTCTCTAACGCA+AGG | 0.602451 | 2.4:-53247075 | MS.gene57451:CDS |
GGATCAGATTCCAAAAGCAA+TGG | 0.603808 | 2.4:-53244969 | MS.gene57451:CDS |
GTGAAACAGACTTTGAATCA+GGG | 0.603849 | 2.4:+53246969 | None:intergenic |
GCGTCAACTGATAATAGTGT+TGG | 0.605461 | 2.4:-53242637 | MS.gene57451:CDS |
GTATACTTTCCAATCGCTAG+AGG | 0.611114 | 2.4:+53243097 | None:intergenic |
GATACATGTGGAACCATCTG+TGG | 0.612739 | 2.4:-53244990 | MS.gene57451:CDS |
GTTGATGCTACAAAGAGAGG+TGG | 0.614494 | 2.4:-53240334 | MS.gene57451:CDS |
TTGATTTCCTGGCACCACCA+TGG | 0.620952 | 2.4:-53246696 | MS.gene57451:CDS |
AAGAAGAATTTCCAGTCTCG+TGG | 0.621984 | 2.4:-53243426 | MS.gene57451:CDS |
TGACTGCCGTATCTCAGAGA+TGG | 0.622254 | 2.4:-53243841 | MS.gene57451:CDS |
ACCATTCAGAGGAAGACCAC+TGG | 0.628594 | 2.4:-53242580 | MS.gene57451:CDS |
TAGAAGATAATTCAGGTCCA+GGG | 0.630217 | 2.4:-53243021 | MS.gene57451:CDS |
TCTCAGTTGTCAAATAGTAA+GGG | 0.632048 | 2.4:-53241985 | MS.gene57451:CDS |
TTGATGCTACAAAGAGAGGT+GGG | 0.635479 | 2.4:-53240333 | MS.gene57451:CDS |
AGCATCAACATTGCTTACAG+AGG | 0.636898 | 2.4:+53244222 | None:intergenic |
AGAGAAAGACATATTTAGTG+AGG | 0.639055 | 2.4:-53243951 | MS.gene57451:intron |
ACAAGTAGAGCACGTGTCAG+GGG | 0.639473 | 2.4:-53242054 | MS.gene57451:CDS |
TCTGCTGTAAATGCAATGAA+AGG | 0.640153 | 2.4:-53245014 | MS.gene57451:CDS |
ATCAACTCTGAAATGGAATG+TGG | 0.641513 | 2.4:+53246714 | None:intergenic |
GCACAAAGCCACGTAAACCC+TGG | 0.642230 | 2.4:+53247317 | None:intergenic |
TGACCGTTCAAAATATGGGA+AGG | 0.642758 | 2.4:+53244599 | None:intergenic |
ATCCTGACCATGTTTCCACC+GGG | 0.643417 | 2.4:-53247111 | MS.gene57451:CDS |
ATTTCTTCCCAATTGCACAT+GGG | 0.645487 | 2.4:-53244903 | MS.gene57451:CDS |
GGACTAGGAAAAGTTAAGGA+AGG | 0.646496 | 2.4:-53243139 | MS.gene57451:CDS |
TTTCCAGTCTCGTGGTCATG+GGG | 0.647882 | 2.4:-53243418 | MS.gene57451:intron |
CTTCTCAGGATATGGTACAT+GGG | 0.650253 | 2.4:-53247033 | MS.gene57451:CDS |
AACTGTGCTAGTAGAACACA+CGG | 0.651364 | 2.4:+53247357 | None:intergenic |
GGACTAGGAAAAGTGAAGGA+AGG | 0.653313 | 2.4:-53243172 | MS.gene57451:CDS |
AAGGAGCAAGATACACGACT+GGG | 0.653984 | 2.4:-53241757 | MS.gene57451:CDS |
TTAAGCTCAGAGGCATTCAG+CGG | 0.654238 | 2.4:-53246902 | MS.gene57451:CDS |
TACAGCAGACAGCAACACAA+AGG | 0.655940 | 2.4:+53245028 | None:intergenic |
TGGATGTATGTGAATGAACA+TGG | 0.664078 | 2.4:-53247271 | MS.gene57451:CDS |
GCAAACAAGTAACTGAGGCA+CGG | 0.664806 | 2.4:-53242188 | MS.gene57451:CDS |
ACACTGATGTCACCATTCAG+AGG | 0.665148 | 2.4:-53242591 | MS.gene57451:CDS |
ACTAAATATGTCTTTCTCTG+GGG | 0.667298 | 2.4:+53243955 | None:intergenic |
AATATTTCACACTCACACCA+GGG | 0.671469 | 2.4:-53247334 | MS.gene57451:CDS |
TCACATGGATTTAAGCTCAG+AGG | 0.673860 | 2.4:-53246912 | MS.gene57451:CDS |
TAGGTTGATGCTACAAAGAG+AGG | 0.676637 | 2.4:-53240337 | MS.gene57451:CDS |
TAATAGTGTTGGCGTGAAGG+TGG | 0.685213 | 2.4:-53242626 | MS.gene57451:CDS |
CCATTGATGACAGGATACAC+AGG | 0.685505 | 2.4:+53247175 | None:intergenic |
ATCACCGCAAGAATTTGTCA+CGG | 0.691897 | 2.4:-53243072 | MS.gene57451:CDS |
AGTGGGACTAGGAAAAGTGA+AGG | 0.694009 | 2.4:-53243176 | MS.gene57451:CDS |
AGCCAGCAAACAAGTAACTG+AGG | 0.695660 | 2.4:-53242193 | MS.gene57451:CDS |
GCAATGAAAGGAGATACATG+TGG | 0.714311 | 2.4:-53245002 | MS.gene57451:CDS |
AACAAGTAACTGAGGCACGG+AGG | 0.728589 | 2.4:-53242185 | MS.gene57451:CDS |
AATCTTCAAGATATCCATGG+TGG | 0.734776 | 2.4:+53246682 | None:intergenic |
GCTCAAATATGCAAACCCGG+TGG | 0.741563 | 2.4:+53247096 | None:intergenic |
AGGAGCAAGATACACGACTG+GGG | 0.750387 | 2.4:-53241756 | MS.gene57451:CDS |
ATATCTTGAAGATTCAACAG+TGG | 0.754206 | 2.4:-53246673 | MS.gene57451:intron |
AATGAACATGGACAAATGTG+CGG | 0.762296 | 2.4:-53247259 | MS.gene57451:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 53238692 | 53247419 | 53238692 | ID=MS.gene57451 |
chr2.4 | mRNA | 53238692 | 53247419 | 53238692 | ID=MS.gene57451.t1;Parent=MS.gene57451 |
chr2.4 | exon | 53246883 | 53247419 | 53246883 | ID=MS.gene57451.t1.exon1;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53246883 | 53247419 | 53246883 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53246674 | 53246790 | 53246674 | ID=MS.gene57451.t1.exon2;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53246674 | 53246790 | 53246674 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53244758 | 53245078 | 53244758 | ID=MS.gene57451.t1.exon3;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53244758 | 53245078 | 53244758 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53244340 | 53244657 | 53244340 | ID=MS.gene57451.t1.exon4;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53244340 | 53244657 | 53244340 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53243952 | 53244263 | 53243952 | ID=MS.gene57451.t1.exon5;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53243952 | 53244263 | 53243952 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53243419 | 53243874 | 53243419 | ID=MS.gene57451.t1.exon6;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53243419 | 53243874 | 53243419 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53242789 | 53243278 | 53242789 | ID=MS.gene57451.t1.exon7;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53242789 | 53243278 | 53242789 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53242554 | 53242703 | 53242554 | ID=MS.gene57451.t1.exon8;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53242554 | 53242703 | 53242554 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53241897 | 53242321 | 53241897 | ID=MS.gene57451.t1.exon9;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53241897 | 53242321 | 53241897 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53241683 | 53241805 | 53241683 | ID=MS.gene57451.t1.exon10;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53241683 | 53241805 | 53241683 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53240974 | 53241054 | 53240974 | ID=MS.gene57451.t1.exon11;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53240974 | 53241054 | 53240974 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53240303 | 53240356 | 53240303 | ID=MS.gene57451.t1.exon12;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53240303 | 53240356 | 53240303 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
chr2.4 | exon | 53238692 | 53238760 | 53238692 | ID=MS.gene57451.t1.exon13;Parent=MS.gene57451.t1 |
chr2.4 | CDS | 53238692 | 53238760 | 53238692 | ID=cds.MS.gene57451.t1;Parent=MS.gene57451.t1 |
Gene Sequence |
Protein sequence |