Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57487.t1 | XP_024634520.1 | 62.6 | 744 | 140 | 3 | 3 | 609 | 12 | 754 | 1.80E-253 | 885.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57487.t1 | Q9SZL8 | 28.5 | 585 | 261 | 11 | 18 | 451 | 59 | 637 | 1.7e-63 | 245.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57487.t1 | A0A2Z6P1T9 | 62.1 | 731 | 141 | 1 | 14 | 608 | 5 | 735 | 1.4e-247 | 865.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene57487.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57487.t1 | MTR_6g048540 | 85.470 | 117 | 17 | 0 | 423 | 539 | 106 | 222 | 5.42e-64 | 211 |
| MS.gene57487.t1 | MTR_6g048540 | 95.876 | 97 | 4 | 0 | 1 | 97 | 1 | 97 | 3.32e-59 | 198 |
| MS.gene57487.t1 | MTR_0734s0010 | 45.078 | 193 | 101 | 2 | 415 | 607 | 1 | 188 | 1.55e-47 | 165 |
| MS.gene57487.t1 | MTR_0853s0010 | 52.083 | 144 | 68 | 1 | 19 | 162 | 16 | 158 | 7.62e-45 | 157 |
| MS.gene57487.t1 | MTR_1g019850 | 51.852 | 162 | 64 | 2 | 3 | 164 | 51 | 198 | 2.62e-44 | 158 |
| MS.gene57487.t1 | MTR_3g020080 | 48.667 | 150 | 54 | 4 | 240 | 383 | 3 | 135 | 1.27e-29 | 114 |
| MS.gene57487.t1 | MTR_4g035820 | 24.661 | 369 | 242 | 10 | 21 | 365 | 68 | 424 | 1.14e-20 | 96.7 |
| MS.gene57487.t1 | MTR_8g466860 | 84.615 | 39 | 6 | 0 | 254 | 292 | 80 | 118 | 1.66e-15 | 73.6 |
| MS.gene57487.t1 | MTR_8g465780 | 30.380 | 158 | 97 | 4 | 261 | 415 | 1 | 148 | 3.60e-13 | 68.6 |
| MS.gene57487.t1 | MTR_2g024230 | 53.704 | 54 | 25 | 0 | 28 | 81 | 90 | 143 | 3.84e-12 | 65.1 |
| MS.gene57487.t1 | MTR_6g022070 | 32.609 | 138 | 92 | 1 | 218 | 354 | 30 | 167 | 6.62e-12 | 67.8 |
| MS.gene57487.t1 | MTR_2g098880 | 29.197 | 137 | 76 | 4 | 27 | 156 | 72 | 194 | 1.74e-11 | 65.5 |
| MS.gene57487.t1 | MTR_2g098880 | 29.197 | 137 | 76 | 4 | 27 | 156 | 60 | 182 | 2.01e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57487.t1 | AT4G38180 | 39.095 | 243 | 148 | 0 | 209 | 451 | 395 | 637 | 4.06e-57 | 206 |
| MS.gene57487.t1 | AT4G38180 | 34.615 | 208 | 113 | 9 | 18 | 209 | 59 | 259 | 9.92e-24 | 106 |
| MS.gene57487.t1 | AT4G38170 | 32.416 | 327 | 215 | 2 | 209 | 531 | 160 | 484 | 4.44e-52 | 187 |
| MS.gene57487.t1 | AT2G27110 | 32.423 | 293 | 193 | 2 | 209 | 501 | 197 | 484 | 2.50e-48 | 180 |
| MS.gene57487.t1 | AT2G27110 | 32.423 | 293 | 193 | 2 | 209 | 501 | 342 | 629 | 4.49e-48 | 181 |
| MS.gene57487.t1 | AT2G27110 | 32.423 | 293 | 193 | 2 | 209 | 501 | 342 | 629 | 4.49e-48 | 181 |
| MS.gene57487.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene57487.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene57487.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene57487.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene57487.t1 | AT4G15090 | 34.583 | 240 | 156 | 1 | 212 | 451 | 374 | 612 | 3.42e-41 | 160 |
| MS.gene57487.t1 | AT1G76320 | 30.372 | 349 | 221 | 8 | 222 | 560 | 321 | 657 | 2.12e-38 | 151 |
| MS.gene57487.t1 | AT1G76320 | 30.372 | 349 | 221 | 8 | 222 | 560 | 321 | 657 | 2.51e-38 | 151 |
| MS.gene57487.t1 | AT1G76320 | 30.372 | 349 | 221 | 8 | 222 | 560 | 321 | 657 | 2.51e-38 | 151 |
| MS.gene57487.t1 | AT1G76320 | 30.372 | 349 | 221 | 8 | 222 | 560 | 321 | 657 | 2.75e-38 | 150 |
| MS.gene57487.t1 | AT3G22170 | 32.627 | 236 | 158 | 1 | 212 | 447 | 383 | 617 | 9.38e-37 | 147 |
| MS.gene57487.t1 | AT3G22170 | 26.222 | 225 | 127 | 10 | 6 | 211 | 42 | 246 | 3.66e-12 | 70.1 |
| MS.gene57487.t1 | AT3G22170 | 32.627 | 236 | 158 | 1 | 212 | 447 | 383 | 617 | 9.38e-37 | 147 |
| MS.gene57487.t1 | AT3G22170 | 26.222 | 225 | 127 | 10 | 6 | 211 | 42 | 246 | 3.66e-12 | 70.1 |
| MS.gene57487.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.39e-36 | 146 |
| MS.gene57487.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.39e-36 | 146 |
| MS.gene57487.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.50e-36 | 146 |
| MS.gene57487.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.50e-36 | 146 |
| MS.gene57487.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.50e-36 | 146 |
| MS.gene57487.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 287 | 573 | 1.56e-36 | 146 |
| MS.gene57487.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 287 | 573 | 1.68e-36 | 145 |
| MS.gene57487.t1 | AT2G32250 | 29.352 | 293 | 201 | 2 | 222 | 514 | 328 | 614 | 1.72e-36 | 145 |
| MS.gene57487.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 6.93e-35 | 141 |
| MS.gene57487.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 6.93e-35 | 141 |
| MS.gene57487.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 264 | 501 | 7.15e-35 | 140 |
| MS.gene57487.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 8.28e-35 | 140 |
| MS.gene57487.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 8.28e-35 | 140 |
| MS.gene57487.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 321 | 558 | 8.64e-35 | 140 |
| MS.gene57487.t1 | AT4G19990 | 32.773 | 238 | 159 | 1 | 211 | 447 | 335 | 572 | 9.22e-35 | 140 |
| MS.gene57487.t1 | AT3G06250 | 30.714 | 280 | 188 | 3 | 222 | 501 | 481 | 754 | 8.37e-34 | 137 |
| MS.gene57487.t1 | AT3G06250 | 30.714 | 280 | 188 | 3 | 222 | 501 | 481 | 754 | 8.37e-34 | 137 |
| MS.gene57487.t1 | AT3G06250 | 30.714 | 280 | 188 | 3 | 222 | 501 | 481 | 754 | 8.37e-34 | 137 |
| MS.gene57487.t1 | AT5G18960 | 30.420 | 286 | 185 | 3 | 220 | 501 | 503 | 778 | 3.00e-33 | 136 |
| MS.gene57487.t1 | AT5G18960 | 30.420 | 286 | 185 | 3 | 220 | 501 | 503 | 778 | 3.00e-33 | 136 |
| MS.gene57487.t1 | AT1G52520 | 31.183 | 279 | 170 | 7 | 191 | 449 | 363 | 639 | 6.12e-32 | 132 |
| MS.gene57487.t1 | AT1G80010 | 28.016 | 257 | 163 | 6 | 212 | 449 | 409 | 662 | 1.01e-26 | 115 |
| MS.gene57487.t1 | AT1G10240 | 27.458 | 295 | 173 | 7 | 235 | 511 | 399 | 670 | 1.42e-25 | 112 |
| MS.gene57487.t1 | AT1G10240 | 26.776 | 183 | 111 | 4 | 25 | 191 | 45 | 220 | 2.01e-13 | 73.9 |
| MS.gene57487.t1 | AT1G10240 | 27.458 | 295 | 173 | 7 | 235 | 511 | 399 | 670 | 1.42e-25 | 112 |
| MS.gene57487.t1 | AT1G10240 | 26.776 | 183 | 111 | 4 | 25 | 191 | 45 | 220 | 2.01e-13 | 73.9 |
| MS.gene57487.t1 | AT5G28530 | 29.187 | 209 | 142 | 2 | 239 | 447 | 355 | 557 | 7.72e-18 | 87.8 |
| MS.gene57487.t1 | AT5G28530 | 29.187 | 209 | 142 | 2 | 239 | 447 | 418 | 620 | 1.49e-17 | 87.0 |
| MS.gene57487.t1 | AT5G28530 | 28.708 | 209 | 139 | 2 | 239 | 447 | 355 | 553 | 2.37e-17 | 86.3 |
| MS.gene57487.t1 | AT5G28530 | 28.708 | 209 | 139 | 2 | 239 | 447 | 418 | 616 | 4.70e-17 | 85.5 |
| MS.gene57487.t1 | AT5G28530 | 28.708 | 209 | 139 | 2 | 239 | 447 | 418 | 616 | 4.70e-17 | 85.5 |
| MS.gene57487.t1 | AT3G59470 | 31.852 | 135 | 75 | 5 | 5 | 132 | 47 | 171 | 1.02e-11 | 65.9 |
| MS.gene57487.t1 | AT3G59470 | 31.852 | 135 | 75 | 5 | 5 | 132 | 47 | 171 | 1.02e-11 | 65.9 |
| MS.gene57487.t1 | AT3G59470 | 31.852 | 135 | 75 | 5 | 5 | 132 | 59 | 183 | 1.23e-11 | 65.9 |
Find 87 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCTTGTTGAACAGTTTA+AGG | 0.134754 | 8.3:-61202837 | MS.gene57487:CDS |
| ATGTCAACTGTTTGAATATT+TGG | 0.186130 | 8.3:-61201658 | MS.gene57487:CDS |
| TTTAAGTTCTCGCTTGAAAA+TGG | 0.195510 | 8.3:+61202223 | None:intergenic |
| CCCATCCTTCTTTCTTCCTT+TGG | 0.210149 | 8.3:+61201218 | None:intergenic |
| GGGATTCAGCTTTCTCTAAT+AGG | 0.233911 | 8.3:-61202769 | MS.gene57487:CDS |
| GAACTTAAAAGTTGCATTCA+TGG | 0.260689 | 8.3:-61202209 | MS.gene57487:CDS |
| TGTCAACTGTTTGAATATTT+GGG | 0.293427 | 8.3:-61201657 | MS.gene57487:CDS |
| AGATGAATGGAAGCGTTTAA+TGG | 0.328762 | 8.3:-61202162 | MS.gene57487:CDS |
| GATATTGTGCAGACATATAT+TGG | 0.353622 | 8.3:-61201634 | MS.gene57487:CDS |
| TAGCCTGATTTGTGTCATCT+TGG | 0.357525 | 8.3:+61203035 | None:intergenic |
| GGATTCAGCTTTCTCTAATA+GGG | 0.365034 | 8.3:-61202768 | MS.gene57487:CDS |
| GGGGTACAACGGAAGGTAAT+TGG | 0.367395 | 8.3:-61202958 | MS.gene57487:CDS |
| AAGAAGGATGCATGTTCAAC+AGG | 0.368503 | 8.3:-61201472 | MS.gene57487:CDS |
| TTTAATGGTTGAGTATAATC+TGG | 0.372730 | 8.3:-61202147 | MS.gene57487:CDS |
| TGGTGATGGAATTTCTCCTT+TGG | 0.376539 | 8.3:-61201331 | MS.gene57487:CDS |
| TTCTTCCTTTGGTTTGTGCT+TGG | 0.378150 | 8.3:+61201229 | None:intergenic |
| CTTTCTCTAATAGGGATTGT+TGG | 0.393553 | 8.3:-61202760 | MS.gene57487:CDS |
| AATAAATTTGATTGACATCC+TGG | 0.396334 | 8.3:+61201301 | None:intergenic |
| GTTGAACAGTTTAAGGAAGA+AGG | 0.402857 | 8.3:-61202830 | MS.gene57487:CDS |
| GAAAACAATGAATGGCTTCA+AGG | 0.415447 | 8.3:-61202125 | MS.gene57487:CDS |
| AAAACCGAAAAGAGCTATCT+TGG | 0.417824 | 8.3:-61203110 | MS.gene57487:CDS |
| GAACAGCCAGAACTCACTAT+TGG | 0.421931 | 8.3:-61201261 | MS.gene57487:CDS |
| TAAATAGTGAACCTTGTAAT+GGG | 0.426162 | 8.3:-61203219 | MS.gene57487:CDS |
| ATCTCATGAAAATATTTCAA+TGG | 0.427085 | 8.3:-61203266 | MS.gene57487:CDS |
| TTCTCCTTTGGAATCTAGCC+AGG | 0.428333 | 8.3:-61201319 | MS.gene57487:CDS |
| GGGTTTCCAATAGTGAGTTC+TGG | 0.429369 | 8.3:+61201255 | None:intergenic |
| AATTCACTTCTATTATAAAC+CGG | 0.443437 | 8.3:+61202074 | None:intergenic |
| CTTTGGTTTGTGCTTGGCGT+GGG | 0.443719 | 8.3:+61201235 | None:intergenic |
| TCTTGCAAGTTCTGCTGTTG+TGG | 0.446841 | 8.3:+61201094 | None:intergenic |
| AAGCTTCACTTACTGTTACA+AGG | 0.461078 | 8.3:-61202979 | MS.gene57487:CDS |
| AAGAGTTCATCTTCTCGAAC+CGG | 0.461559 | 8.3:-61203007 | MS.gene57487:CDS |
| AATCCAAGATGACACAAATC+AGG | 0.464191 | 8.3:-61203038 | MS.gene57487:CDS |
| TTTAATTCCTCGCCAACATT+CGG | 0.464350 | 8.3:+61203238 | None:intergenic |
| ATTTGTGTTAAAATTTGAAA+AGG | 0.469070 | 8.3:-61201964 | MS.gene57487:CDS |
| TCTCATGAAAATATTTCAAT+GGG | 0.469484 | 8.3:-61203265 | MS.gene57487:CDS |
| TACAATGTTTCGAAGATGAA+TGG | 0.470517 | 8.3:-61202175 | MS.gene57487:CDS |
| AGTAAGTGAAGCTTTACAAC+CGG | 0.474121 | 8.3:+61202988 | None:intergenic |
| TTGGTAATATTGCAAGCAAA+AGG | 0.478299 | 8.3:-61201615 | MS.gene57487:CDS |
| TTAAATAGTGAACCTTGTAA+TGG | 0.482835 | 8.3:-61203220 | MS.gene57487:CDS |
| TAATTATTGCAAACAGAGAC+AGG | 0.484710 | 8.3:-61202678 | MS.gene57487:intron |
| GGAGAAATTCCATCACCAAC+AGG | 0.484890 | 8.3:+61201336 | None:intergenic |
| TTGAATTCCATCCCATTACA+AGG | 0.486817 | 8.3:+61203208 | None:intergenic |
| TCAAATTTACCTGTTGGTGA+TGG | 0.490672 | 8.3:-61201345 | MS.gene57487:CDS |
| CGAAGTAGGAATTTAGATGT+TGG | 0.494361 | 8.3:-61202719 | MS.gene57487:CDS |
| CCTTTGGTTTGTGCTTGGCG+TGG | 0.499884 | 8.3:+61201234 | None:intergenic |
| ATAATCTGGAAAACAATGAA+TGG | 0.501263 | 8.3:-61202133 | MS.gene57487:CDS |
| AAGAAATCAAATTTACCTGT+TGG | 0.505747 | 8.3:-61201351 | MS.gene57487:CDS |
| TTGAACAGTTTAAGGAAGAA+GGG | 0.512879 | 8.3:-61202829 | MS.gene57487:CDS |
| GGCGCTTGATAGCCGCTTAG+CGG | 0.513168 | 8.3:-61201943 | MS.gene57487:CDS |
| AGCTTCACTTACTGTTACAA+GGG | 0.522791 | 8.3:-61202978 | MS.gene57487:CDS |
| CCAAAGGAAGAAAGAAGGAT+GGG | 0.526798 | 8.3:-61201218 | MS.gene57487:CDS |
| ATCTTGGTATGTTCTAATGA+AGG | 0.531078 | 8.3:-61203094 | MS.gene57487:CDS |
| AGAAAGAAGATTAAAAGAGA+AGG | 0.533498 | 8.3:-61201774 | MS.gene57487:CDS |
| TCAATGGGATCTCCGAATGT+TGG | 0.534987 | 8.3:-61203250 | MS.gene57487:CDS |
| GACACAAAGATTGCTAAATG+TGG | 0.536676 | 8.3:-61201681 | MS.gene57487:CDS |
| TAGTGAACCTTGTAATGGGA+TGG | 0.536929 | 8.3:-61203215 | MS.gene57487:CDS |
| TCTTCGAAACATTGTATACT+CGG | 0.550021 | 8.3:+61202182 | None:intergenic |
| ACAAACCAAAGGAAGAAAGA+AGG | 0.551427 | 8.3:-61201223 | MS.gene57487:CDS |
| ACCAAAGGAAGAAAGAAGGA+TGG | 0.552890 | 8.3:-61201219 | MS.gene57487:CDS |
| AAAACAATGAATGGCTTCAA+GGG | 0.554540 | 8.3:-61202124 | MS.gene57487:CDS |
| GTCAACTGTTTGAATATTTG+GGG | 0.555701 | 8.3:-61201656 | MS.gene57487:CDS |
| CGCTGCAAAATGAAATGACT+AGG | 0.557513 | 8.3:+61201579 | None:intergenic |
| TCAAAACTTGAGGTGCATGC+TGG | 0.558360 | 8.3:-61201864 | MS.gene57487:CDS |
| AAGGAAGAAGGGATACCGAC+AGG | 0.558573 | 8.3:-61202818 | MS.gene57487:CDS |
| TATCAGAGCATCATGGATAC+CGG | 0.562826 | 8.3:-61202093 | MS.gene57487:CDS |
| AGTTGATCTTGCTGAAGACT+CGG | 0.563370 | 8.3:-61201436 | MS.gene57487:CDS |
| CAATGATCATAACCATGCTA+TGG | 0.573210 | 8.3:-61202918 | MS.gene57487:CDS |
| CAATCAAATTTATTTGTCAG+AGG | 0.576100 | 8.3:-61201292 | MS.gene57487:CDS |
| TACAACATGGTCAAAACTTG+AGG | 0.581192 | 8.3:-61201874 | MS.gene57487:CDS |
| CTTCCTTAAACTGTTCAACA+AGG | 0.583874 | 8.3:+61202834 | None:intergenic |
| CCACGCCAAGCACAAACCAA+AGG | 0.586137 | 8.3:-61201234 | MS.gene57487:CDS |
| TATATAGTATCAGAGCATCA+TGG | 0.587463 | 8.3:-61202100 | MS.gene57487:CDS |
| CAAAGGAAGAAAGAAGGATG+GGG | 0.594217 | 8.3:-61201217 | MS.gene57487:CDS |
| TACTGTTACAAGGGGTACAA+CGG | 0.611755 | 8.3:-61202969 | MS.gene57487:CDS |
| GCTTCACTTACTGTTACAAG+GGG | 0.617495 | 8.3:-61202977 | MS.gene57487:CDS |
| CAAAATTGCAGATTCAAGAG+TGG | 0.619428 | 8.3:-61201183 | MS.gene57487:CDS |
| TGTCATGAGTGTGGTGCACA+TGG | 0.635601 | 8.3:-61201117 | MS.gene57487:CDS |
| AGTAATGGATGCTAATGATG+TGG | 0.639172 | 8.3:-61203293 | None:intergenic |
| GGGATCTCCGAATGTTGGCG+AGG | 0.653176 | 8.3:-61203245 | MS.gene57487:CDS |
| TGTCAAAAGTTCTAACAACA+AGG | 0.663183 | 8.3:-61203062 | MS.gene57487:CDS |
| ACATCCTGGCTAGATTCCAA+AGG | 0.665285 | 8.3:+61201315 | None:intergenic |
| GTTACAAGGGGTACAACGGA+AGG | 0.671387 | 8.3:-61202965 | MS.gene57487:CDS |
| AAACTCGGAGGTTTACAACA+TGG | 0.673994 | 8.3:-61201887 | MS.gene57487:CDS |
| ATGAAAGTAAGCATAAAACT+CGG | 0.678069 | 8.3:-61201902 | MS.gene57487:CDS |
| TGGACTAAGGATGCTAACAA+AGG | 0.678940 | 8.3:-61201555 | MS.gene57487:CDS |
| AAAGTAAGCATAAAACTCGG+AGG | 0.714539 | 8.3:-61201899 | MS.gene57487:CDS |
| AGAAAAGCATGTCATGAGTG+TGG | 0.715894 | 8.3:-61201126 | MS.gene57487:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTGTTAAAATTTGAAA+AGG | - | chr8.3:61202399-61202418 | MS.gene57487:intron | 15.0% |
| !!! | AATTTATTTGCTAGAAAAAT+TGG | - | chr8.3:61201206-61201225 | MS.gene57487:CDS | 15.0% |
| !! | AATTCACTTCTATTATAAAC+CGG | + | chr8.3:61202292-61202311 | None:intergenic | 20.0% |
| !! | ATCTCATGAAAATATTTCAA+TGG | - | chr8.3:61201097-61201116 | MS.gene57487:CDS | 20.0% |
| !! | TCTCATGAAAATATTTCAAT+GGG | - | chr8.3:61201098-61201117 | MS.gene57487:CDS | 20.0% |
| !!! | CATTACCAATCAATTTTATT+TGG | - | chr8.3:61201893-61201912 | MS.gene57487:CDS | 20.0% |
| !!! | TCGAATGATAAATTTTTTCT+GGG | - | chr8.3:61201754-61201773 | MS.gene57487:CDS | 20.0% |
| !!! | TTGCTACAATTTTCAATAAT+GGG | - | chr8.3:61201573-61201592 | MS.gene57487:CDS | 20.0% |
| ! | AAGAAATCAAATTTACCTGT+TGG | - | chr8.3:61203012-61203031 | MS.gene57487:CDS | 25.0% |
| ! | AATAAATTTGATTGACATCC+TGG | + | chr8.3:61203065-61203084 | None:intergenic | 25.0% |
| ! | AGAAAGAAGATTAAAAGAGA+AGG | - | chr8.3:61202589-61202608 | MS.gene57487:intron | 25.0% |
| ! | ATAATCTGGAAAACAATGAA+TGG | - | chr8.3:61202230-61202249 | MS.gene57487:CDS | 25.0% |
| ! | ATATGAAAAAACTTCGAAGT+AGG | - | chr8.3:61201630-61201649 | MS.gene57487:CDS | 25.0% |
| ! | ATGAAAGTAAGCATAAAACT+CGG | - | chr8.3:61202461-61202480 | MS.gene57487:intron | 25.0% |
| ! | ATGAGATGTCATAAAAAGAT+GGG | - | chr8.3:61201491-61201510 | MS.gene57487:CDS | 25.0% |
| ! | ATGTCAACTGTTTGAATATT+TGG | - | chr8.3:61202705-61202724 | MS.gene57487:CDS | 25.0% |
| ! | CAATCAAATTTATTTGTCAG+AGG | - | chr8.3:61203071-61203090 | MS.gene57487:CDS | 25.0% |
| ! | CACAACCAAATAAAATTGAT+TGG | + | chr8.3:61201901-61201920 | None:intergenic | 25.0% |
| ! | TAAATAGTGAACCTTGTAAT+GGG | - | chr8.3:61201144-61201163 | MS.gene57487:CDS | 25.0% |
| ! | TATGAGATGTCATAAAAAGA+TGG | - | chr8.3:61201490-61201509 | MS.gene57487:CDS | 25.0% |
| ! | TGTCAACTGTTTGAATATTT+GGG | - | chr8.3:61202706-61202725 | MS.gene57487:CDS | 25.0% |
| ! | TTAAATAGTGAACCTTGTAA+TGG | - | chr8.3:61201143-61201162 | MS.gene57487:CDS | 25.0% |
| ! | TTTAATGGTTGAGTATAATC+TGG | - | chr8.3:61202216-61202235 | MS.gene57487:CDS | 25.0% |
| !! | GTTGCTACAATTTTCAATAA+TGG | - | chr8.3:61201572-61201591 | MS.gene57487:CDS | 25.0% |
| !! | TCATATAAGACACACTTTTA+GGG | + | chr8.3:61201475-61201494 | None:intergenic | 25.0% |
| !! | TGCTACAATTTTCAATAATG+GGG | - | chr8.3:61201574-61201593 | MS.gene57487:CDS | 25.0% |
| !!! | AATAGAAGTGAATTTTTTGC+TGG | - | chr8.3:61202298-61202317 | MS.gene57487:intron | 25.0% |
| !!! | AGTAATTTTGATGATCAAAC+TGG | - | chr8.3:61202853-61202872 | MS.gene57487:CDS | 25.0% |
| !!! | ATAGAAGTGAATTTTTTGCT+GGG | - | chr8.3:61202299-61202318 | MS.gene57487:intron | 25.0% |
| !!! | CTCGAATGATAAATTTTTTC+TGG | - | chr8.3:61201753-61201772 | MS.gene57487:CDS | 25.0% |
| !!! | GCACTTCAAAAATTTTAAGA+AGG | - | chr8.3:61202875-61202894 | MS.gene57487:CDS | 25.0% |
| !!! | TTTGCTAGAAAAATTGGTTT+TGG | - | chr8.3:61201212-61201231 | MS.gene57487:CDS | 25.0% |
| AAAACAATGAATGGCTTCAA+GGG | - | chr8.3:61202239-61202258 | MS.gene57487:CDS | 30.0% | |
| AAATGACATCTCCAAATTGT+TGG | + | chr8.3:61201805-61201824 | None:intergenic | 30.0% | |
| AGATTAGCATACCAACAATT+TGG | - | chr8.3:61201791-61201810 | MS.gene57487:CDS | 30.0% | |
| ATCTTGGTATGTTCTAATGA+AGG | - | chr8.3:61201269-61201288 | MS.gene57487:CDS | 30.0% | |
| GAACTTAAAAGTTGCATTCA+TGG | - | chr8.3:61202154-61202173 | MS.gene57487:CDS | 30.0% | |
| GATATTGTGCAGACATATAT+TGG | - | chr8.3:61202729-61202748 | MS.gene57487:CDS | 30.0% | |
| GATCAAGATTTAGCTATGAA+AGG | - | chr8.3:61202016-61202035 | MS.gene57487:CDS | 30.0% | |
| GTCAACTGTTTGAATATTTG+GGG | - | chr8.3:61202707-61202726 | MS.gene57487:CDS | 30.0% | |
| TAATTATTGCAAACAGAGAC+AGG | - | chr8.3:61201685-61201704 | MS.gene57487:CDS | 30.0% | |
| TACAATGTTTCGAAGATGAA+TGG | - | chr8.3:61202188-61202207 | MS.gene57487:CDS | 30.0% | |
| TCTTCGAAACATTGTATACT+CGG | + | chr8.3:61202184-61202203 | None:intergenic | 30.0% | |
| TGATCAGTTATGACAGATTT+GGG | + | chr8.3:61202001-61202020 | None:intergenic | 30.0% | |
| TGATTATTCAATCCAACGAA+CGG | + | chr8.3:61201875-61201894 | None:intergenic | 30.0% | |
| TTGAACAGTTTAAGGAAGAA+GGG | - | chr8.3:61201534-61201553 | MS.gene57487:CDS | 30.0% | |
| TTGATCAGTTATGACAGATT+TGG | + | chr8.3:61202002-61202021 | None:intergenic | 30.0% | |
| ! | CTCATATAAGACACACTTTT+AGG | + | chr8.3:61201476-61201495 | None:intergenic | 30.0% |
| ! | TAGAACTTTTGACAAGATGT+TGG | + | chr8.3:61201295-61201314 | None:intergenic | 30.0% |
| ! | TATATAGTATCAGAGCATCA+TGG | - | chr8.3:61202263-61202282 | MS.gene57487:intron | 30.0% |
| ! | TGCTTTATTACAAGATGAGT+CGG | - | chr8.3:61201919-61201938 | MS.gene57487:CDS | 30.0% |
| ! | TGTCAAAAGTTCTAACAACA+AGG | - | chr8.3:61201301-61201320 | MS.gene57487:CDS | 30.0% |
| ! | TTGGTAATATTGCAAGCAAA+AGG | - | chr8.3:61202748-61202767 | MS.gene57487:CDS | 30.0% |
| ! | TTTAAGTTCTCGCTTGAAAA+TGG | + | chr8.3:61202143-61202162 | None:intergenic | 30.0% |
| !! | GTTGTTTGAAACTTTTCTTG+AGG | - | chr8.3:61201958-61201977 | MS.gene57487:CDS | 30.0% |
| !!! | GTACTTGTTGGTTTTATATG+TGG | + | chr8.3:61201837-61201856 | None:intergenic | 30.0% |
| !!! | TAAATATGAGCTAGCTTTTC+AGG | + | chr8.3:61202109-61202128 | None:intergenic | 30.0% |
| AAAACCGAAAAGAGCTATCT+TGG | - | chr8.3:61201253-61201272 | MS.gene57487:CDS | 35.0% | |
| AAAGTAAGCATAAAACTCGG+AGG | - | chr8.3:61202464-61202483 | MS.gene57487:intron | 35.0% | |
| AAGCTTCACTTACTGTTACA+AGG | - | chr8.3:61201384-61201403 | MS.gene57487:CDS | 35.0% | |
| AATCCAAGATGACACAAATC+AGG | - | chr8.3:61201325-61201344 | MS.gene57487:CDS | 35.0% | |
| ACAAACCAAAGGAAGAAAGA+AGG | - | chr8.3:61203140-61203159 | MS.gene57487:CDS | 35.0% | |
| AGATGTCATAAAAAGATGGG+TGG | - | chr8.3:61201494-61201513 | MS.gene57487:CDS | 35.0% | |
| AGCTTCACTTACTGTTACAA+GGG | - | chr8.3:61201385-61201404 | MS.gene57487:CDS | 35.0% | |
| AGTAAGTGAAGCTTTACAAC+CGG | + | chr8.3:61201378-61201397 | None:intergenic | 35.0% | |
| ATTATTCAATCCAACGAACG+GGG | + | chr8.3:61201873-61201892 | None:intergenic | 35.0% | |
| CAAAATTGCAGATTCAAGAG+TGG | - | chr8.3:61203180-61203199 | MS.gene57487:CDS | 35.0% | |
| CAATGATCATAACCATGCTA+TGG | - | chr8.3:61201445-61201464 | MS.gene57487:CDS | 35.0% | |
| CGAAGTAGGAATTTAGATGT+TGG | - | chr8.3:61201644-61201663 | MS.gene57487:CDS | 35.0% | |
| CTTCCTTAAACTGTTCAACA+AGG | + | chr8.3:61201532-61201551 | None:intergenic | 35.0% | |
| CTTTCTCTAATAGGGATTGT+TGG | - | chr8.3:61201603-61201622 | MS.gene57487:CDS | 35.0% | |
| GAAAACAATGAATGGCTTCA+AGG | - | chr8.3:61202238-61202257 | MS.gene57487:CDS | 35.0% | |
| GACACAAAGATTGCTAAATG+TGG | - | chr8.3:61202682-61202701 | MS.gene57487:CDS | 35.0% | |
| GATTATTCAATCCAACGAAC+GGG | + | chr8.3:61201874-61201893 | None:intergenic | 35.0% | |
| GGATTCAGCTTTCTCTAATA+GGG | - | chr8.3:61201595-61201614 | MS.gene57487:CDS | 35.0% | |
| GTTGAACAGTTTAAGGAAGA+AGG | - | chr8.3:61201533-61201552 | MS.gene57487:CDS | 35.0% | |
| TACAACATGGTCAAAACTTG+AGG | - | chr8.3:61202489-61202508 | MS.gene57487:intron | 35.0% | |
| TTGAATTCCATCCCATTACA+AGG | + | chr8.3:61201158-61201177 | None:intergenic | 35.0% | |
| TTTAATTCCTCGCCAACATT+CGG | + | chr8.3:61201128-61201147 | None:intergenic | 35.0% | |
| ! | ACTTTTCTTGAGGCAATGAA+TGG | - | chr8.3:61201968-61201987 | MS.gene57487:CDS | 35.0% |
| ! | AGTCGGAACGTTCTTTTATA+TGG | - | chr8.3:61201936-61201955 | MS.gene57487:CDS | 35.0% |
| ! | ATTGTAGCAACTTTTCCTGT+CGG | + | chr8.3:61201563-61201582 | None:intergenic | 35.0% |
| ! | CATACCAAGATAGCTCTTTT+CGG | + | chr8.3:61201260-61201279 | None:intergenic | 35.0% |
| ! | TCAAATTTACCTGTTGGTGA+TGG | - | chr8.3:61203018-61203037 | MS.gene57487:CDS | 35.0% |
| !! | AAGCCTTGTTGAACAGTTTA+AGG | - | chr8.3:61201526-61201545 | MS.gene57487:CDS | 35.0% |
| !! | AGATGAATGGAAGCGTTTAA+TGG | - | chr8.3:61202201-61202220 | MS.gene57487:CDS | 35.0% |
| AAACTCGGAGGTTTACAACA+TGG | - | chr8.3:61202476-61202495 | MS.gene57487:intron | 40.0% | |
| AAGAAGGATGCATGTTCAAC+AGG | - | chr8.3:61202891-61202910 | MS.gene57487:CDS | 40.0% | |
| AAGAGTTCATCTTCTCGAAC+CGG | - | chr8.3:61201356-61201375 | MS.gene57487:CDS | 40.0% | |
| ACCAAAGGAAGAAAGAAGGA+TGG | - | chr8.3:61203144-61203163 | MS.gene57487:CDS | 40.0% | |
| AGTTGATCTTGCTGAAGACT+CGG | - | chr8.3:61202927-61202946 | MS.gene57487:CDS | 40.0% | |
| CAAAGGAAGAAAGAAGGATG+GGG | - | chr8.3:61203146-61203165 | MS.gene57487:CDS | 40.0% | |
| CCAAAGGAAGAAAGAAGGAT+GGG | - | chr8.3:61203145-61203164 | MS.gene57487:CDS | 40.0% | |
| CGCTGCAAAATGAAATGACT+AGG | + | chr8.3:61202787-61202806 | None:intergenic | 40.0% | |
| CTTAGCGGTAGAAAAAAGAG+AGG | - | chr8.3:61202435-61202454 | MS.gene57487:intron | 40.0% | |
| GCTTCACTTACTGTTACAAG+GGG | - | chr8.3:61201386-61201405 | MS.gene57487:CDS | 40.0% | |
| GGGATTCAGCTTTCTCTAAT+AGG | - | chr8.3:61201594-61201613 | MS.gene57487:CDS | 40.0% | |
| TGGACTAAGGATGCTAACAA+AGG | - | chr8.3:61202808-61202827 | MS.gene57487:CDS | 40.0% | |
| TTCGAGAATCTTCATCGCAT+TGG | + | chr8.3:61201739-61201758 | None:intergenic | 40.0% | |
| ! | AAAGGGCATACTGTACTTGT+TGG | + | chr8.3:61201849-61201868 | None:intergenic | 40.0% |
| ! | AGAAAAGCATGTCATGAGTG+TGG | - | chr8.3:61203237-61203256 | MS.gene57487:CDS | 40.0% |
| ! | GTCATTTCATTTTGCAGCGT+TGG | - | chr8.3:61202788-61202807 | MS.gene57487:CDS | 40.0% |
| ! | TACTGTTACAAGGGGTACAA+CGG | - | chr8.3:61201394-61201413 | MS.gene57487:CDS | 40.0% |
| ! | TAGCCTGATTTGTGTCATCT+TGG | + | chr8.3:61201331-61201350 | None:intergenic | 40.0% |
| ! | TAGTGAACCTTGTAATGGGA+TGG | - | chr8.3:61201148-61201167 | MS.gene57487:CDS | 40.0% |
| ! | TATCAGAGCATCATGGATAC+CGG | - | chr8.3:61202270-61202289 | MS.gene57487:intron | 40.0% |
| !! | TGGTGATGGAATTTCTCCTT+TGG | - | chr8.3:61203032-61203051 | MS.gene57487:CDS | 40.0% |
| !! | TTCTTCCTTTGGTTTGTGCT+TGG | + | chr8.3:61203137-61203156 | None:intergenic | 40.0% |
| !!! | CTCTTTTTTCTACCGCTAAG+CGG | + | chr8.3:61202435-61202454 | None:intergenic | 40.0% |
| !!! | TTTTAGGGCTAACCATAGCA+TGG | + | chr8.3:61201460-61201479 | None:intergenic | 40.0% |
| ACATCCTGGCTAGATTCCAA+AGG | + | chr8.3:61203051-61203070 | None:intergenic | 45.0% | |
| CCCATCCTTCTTTCTTCCTT+TGG | + | chr8.3:61203148-61203167 | None:intergenic | 45.0% | |
| GAACAGCCAGAACTCACTAT+TGG | - | chr8.3:61203102-61203121 | MS.gene57487:CDS | 45.0% | |
| GGAGAAATTCCATCACCAAC+AGG | + | chr8.3:61203030-61203049 | None:intergenic | 45.0% | |
| GGGTTTCCAATAGTGAGTTC+TGG | + | chr8.3:61203111-61203130 | None:intergenic | 45.0% | |
| TCAAAACTTGAGGTGCATGC+TGG | - | chr8.3:61202499-61202518 | MS.gene57487:intron | 45.0% | |
| TCAATGGGATCTCCGAATGT+TGG | - | chr8.3:61201113-61201132 | MS.gene57487:CDS | 45.0% | |
| TCTTGCAAGTTCTGCTGTTG+TGG | + | chr8.3:61203272-61203291 | None:intergenic | 45.0% | |
| !! | CATTTTGCAGCGTTGGACTA+AGG | - | chr8.3:61202795-61202814 | MS.gene57487:CDS | 45.0% |
| !! | TTCTCCTTTGGAATCTAGCC+AGG | - | chr8.3:61203044-61203063 | MS.gene57487:CDS | 45.0% |
| AAGGAAGAAGGGATACCGAC+AGG | - | chr8.3:61201545-61201564 | MS.gene57487:CDS | 50.0% | |
| AATCCAACGAACGGGGCAAA+GGG | + | chr8.3:61201866-61201885 | None:intergenic | 50.0% | |
| GCCTCTGCTTGTGGCATATT+CGG | - | chr8.3:61202074-61202093 | MS.gene57487:CDS | 50.0% | |
| GGGGTACAACGGAAGGTAAT+TGG | - | chr8.3:61201405-61201424 | MS.gene57487:CDS | 50.0% | |
| TCCGAATATGCCACAAGCAG+AGG | + | chr8.3:61202078-61202097 | None:intergenic | 50.0% | |
| TGTCATGAGTGTGGTGCACA+TGG | - | chr8.3:61203246-61203265 | MS.gene57487:CDS | 50.0% | |
| ! | CAGAGGCGATGTCTAGTTTC+TGG | + | chr8.3:61202061-61202080 | None:intergenic | 50.0% |
| ! | GTTACAAGGGGTACAACGGA+AGG | - | chr8.3:61201398-61201417 | MS.gene57487:CDS | 50.0% |
| !! | CTTTGGTTTGTGCTTGGCGT+GGG | + | chr8.3:61203131-61203150 | None:intergenic | 50.0% |
| CAATCCAACGAACGGGGCAA+AGG | + | chr8.3:61201867-61201886 | None:intergenic | 55.0% | |
| CCACGCCAAGCACAAACCAA+AGG | - | chr8.3:61203129-61203148 | MS.gene57487:CDS | 55.0% | |
| CTAGACATCGCCTCTGCTTG+TGG | - | chr8.3:61202065-61202084 | MS.gene57487:CDS | 55.0% | |
| !! | CCTTTGGTTTGTGCTTGGCG+TGG | + | chr8.3:61203132-61203151 | None:intergenic | 55.0% |
| ATGCCCTTTGCCCCGTTCGT+TGG | - | chr8.3:61201860-61201879 | MS.gene57487:CDS | 60.0% | |
| GGGATCTCCGAATGTTGGCG+AGG | - | chr8.3:61201118-61201137 | MS.gene57487:CDS | 60.0% | |
| ! | GGCGCTTGATAGCCGCTTAG+CGG | - | chr8.3:61202420-61202439 | MS.gene57487:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 61201074 | 61203311 | 61201074 | ID=MS.gene57487 |
| chr8.3 | mRNA | 61201074 | 61203311 | 61201074 | ID=MS.gene57487.t1;Parent=MS.gene57487 |
| chr8.3 | exon | 61202679 | 61203311 | 61202679 | ID=MS.gene57487.t1.exon1;Parent=MS.gene57487.t1 |
| chr8.3 | CDS | 61202679 | 61203311 | 61202679 | ID=cds.MS.gene57487.t1;Parent=MS.gene57487.t1 |
| chr8.3 | exon | 61201074 | 61202270 | 61201074 | ID=MS.gene57487.t1.exon2;Parent=MS.gene57487.t1 |
| chr8.3 | CDS | 61201074 | 61202270 | 61201074 | ID=cds.MS.gene57487.t1;Parent=MS.gene57487.t1 |
| Gene Sequence |
| Protein sequence |
