Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57568.t1 | GAU12310.1 | 43.4 | 722 | 165 | 4 | 35 | 512 | 82 | 803 | 2.90E-140 | 508.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57568.t1 | Q9SZL7 | 34.9 | 209 | 129 | 3 | 214 | 418 | 250 | 455 | 3.1e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57568.t1 | A0A2K3L9Y4 | 38.5 | 702 | 179 | 7 | 48 | 506 | 1 | 692 | 7.0e-112 | 414.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene57568.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57568.t1 | MTR_0853s0010 | 95.570 | 158 | 7 | 0 | 20 | 177 | 1 | 158 | 6.09e-110 | 324 |
| MS.gene57568.t1 | MTR_0734s0010 | 51.064 | 188 | 85 | 4 | 328 | 510 | 1 | 186 | 5.77e-55 | 183 |
| MS.gene57568.t1 | MTR_1g019850 | 53.571 | 168 | 65 | 3 | 18 | 179 | 38 | 198 | 1.94e-51 | 176 |
| MS.gene57568.t1 | MTR_2g024230 | 55.224 | 67 | 30 | 0 | 37 | 103 | 83 | 149 | 1.96e-19 | 85.9 |
| MS.gene57568.t1 | MTR_1g033820 | 53.571 | 56 | 26 | 0 | 32 | 87 | 15 | 70 | 2.69e-15 | 72.0 |
| MS.gene57568.t1 | MTR_6g048540 | 46.250 | 80 | 42 | 1 | 336 | 414 | 106 | 185 | 3.06e-13 | 69.7 |
| MS.gene57568.t1 | MTR_6g048540 | 48.052 | 77 | 37 | 2 | 35 | 108 | 19 | 95 | 1.17e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57568.t1 | AT4G38170 | 39.735 | 151 | 89 | 1 | 214 | 362 | 250 | 400 | 1.66e-31 | 128 |
| MS.gene57568.t1 | AT4G38180 | 39.310 | 145 | 88 | 0 | 221 | 365 | 494 | 638 | 1.04e-29 | 124 |
| MS.gene57568.t1 | AT4G38180 | 28.205 | 195 | 122 | 7 | 41 | 223 | 70 | 258 | 5.27e-15 | 78.6 |
| MS.gene57568.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 294 | 433 | 3.16e-28 | 119 |
| MS.gene57568.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 439 | 578 | 3.25e-28 | 119 |
| MS.gene57568.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 439 | 578 | 3.25e-28 | 119 |
| MS.gene57568.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57568.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57568.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57568.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57568.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57568.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.30e-22 | 102 |
| MS.gene57568.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.30e-22 | 102 |
| MS.gene57568.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.30e-22 | 102 |
| MS.gene57568.t1 | AT5G18960 | 35.664 | 143 | 92 | 0 | 223 | 365 | 590 | 732 | 5.91e-21 | 97.4 |
| MS.gene57568.t1 | AT5G18960 | 35.664 | 143 | 92 | 0 | 223 | 365 | 590 | 732 | 5.91e-21 | 97.4 |
| MS.gene57568.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.48e-18 | 88.6 |
| MS.gene57568.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.48e-18 | 88.6 |
| MS.gene57568.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.48e-18 | 88.6 |
| MS.gene57568.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.66e-18 | 88.6 |
| MS.gene57568.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.66e-18 | 88.6 |
| MS.gene57568.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.85e-18 | 88.6 |
| MS.gene57568.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 373 | 512 | 4.17e-18 | 88.2 |
| MS.gene57568.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 373 | 512 | 4.52e-18 | 88.2 |
| MS.gene57568.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 1.81e-17 | 86.3 |
| MS.gene57568.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 1.81e-17 | 86.3 |
| MS.gene57568.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 1.82e-17 | 86.3 |
| MS.gene57568.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.23e-17 | 85.9 |
| MS.gene57568.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.23e-17 | 85.9 |
| MS.gene57568.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.69e-17 | 85.9 |
| MS.gene57568.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.69e-17 | 85.9 |
| MS.gene57568.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.81e-17 | 85.9 |
| MS.gene57568.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 2.94e-17 | 85.5 |
| MS.gene57568.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 393 | 501 | 2.96e-17 | 85.5 |
| MS.gene57568.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 464 | 572 | 3.01e-17 | 85.5 |
| MS.gene57568.t1 | AT3G22170 | 33.793 | 145 | 94 | 2 | 217 | 360 | 474 | 617 | 5.65e-17 | 84.7 |
| MS.gene57568.t1 | AT3G22170 | 33.793 | 145 | 94 | 2 | 217 | 360 | 474 | 617 | 5.65e-17 | 84.7 |
| MS.gene57568.t1 | AT1G80010 | 32.414 | 145 | 87 | 4 | 224 | 360 | 519 | 660 | 6.49e-15 | 78.2 |
| MS.gene57568.t1 | AT1G52520 | 31.724 | 145 | 91 | 4 | 223 | 359 | 492 | 636 | 7.11e-12 | 68.6 |
| MS.gene57568.t1 | AT1G10240 | 30.973 | 113 | 67 | 3 | 249 | 358 | 500 | 604 | 5.39e-11 | 65.9 |
| MS.gene57568.t1 | AT1G10240 | 30.973 | 113 | 67 | 3 | 249 | 358 | 500 | 604 | 5.39e-11 | 65.9 |
Find 56 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCAACTTTATGAATTTA+TGG | 0.151879 | 8.4:+8909238 | MS.gene57568:CDS |
| AAACATCTTTAAGAAGTTTC+AGG | 0.189455 | 8.4:+8909070 | MS.gene57568:CDS |
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 8.4:-8907445 | None:intergenic |
| CCTTTAGTTTGTGCCATTAT+CGG | 0.234963 | 8.4:-8909638 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 8.4:+8907684 | MS.gene57568:CDS |
| TCTTTCGGAGTCCATCATTC+TGG | 0.292595 | 8.4:-8909531 | None:intergenic |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 8.4:-8909317 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 8.4:+8907860 | MS.gene57568:CDS |
| AACTCAGCTTCTTCAGTTGT+TGG | 0.313522 | 8.4:-8909602 | None:intergenic |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 8.4:+8908007 | MS.gene57568:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 8.4:-8907953 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 8.4:-8908007 | None:intergenic |
| TGTCAACTTTATGAATTTAT+GGG | 0.343627 | 8.4:+8909239 | MS.gene57568:CDS |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 8.4:-8908006 | None:intergenic |
| GCTTGAAAAGATCATCAAAA+AGG | 0.372423 | 8.4:+8909508 | MS.gene57568:CDS |
| TGAAACTCTAGTTTGTCTTT+CGG | 0.388167 | 8.4:-8909546 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 8.4:+8909265 | MS.gene57568:CDS |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 8.4:-8907458 | None:intergenic |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 8.4:+8909341 | MS.gene57568:CDS |
| ATAAAGTTGACAACCACATT+TGG | 0.431711 | 8.4:-8909228 | None:intergenic |
| AATGTTTAGCAATGAAGGTT+CGG | 0.437737 | 8.4:+8908113 | MS.gene57568:CDS |
| GCTACAATGTTTAGCAATGA+AGG | 0.444472 | 8.4:+8908108 | MS.gene57568:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 8.4:+8907897 | MS.gene57568:CDS |
| CTTTCTCTGATAGAGATTGT+TGG | 0.446604 | 8.4:+8908136 | MS.gene57568:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 8.4:+8907805 | MS.gene57568:CDS |
| CAATATTCAAGATCCGATAA+TGG | 0.465564 | 8.4:+8909625 | MS.gene57568:CDS |
| ATTTGGCAGCCCTTGTATCA+AGG | 0.469613 | 8.4:-8909211 | None:intergenic |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 8.4:-8907649 | None:intergenic |
| TGGAAGAATCAAAAGCGGTC+TGG | 0.495399 | 8.4:+8909694 | MS.gene57568:CDS |
| GATCAAGAGGGCTTGCCTAC+CGG | 0.495549 | 8.4:+8908078 | MS.gene57568:CDS |
| CCGATAATGGCACAAACTAA+AGG | 0.499113 | 8.4:+8909638 | MS.gene57568:CDS |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 8.4:-8907952 | None:intergenic |
| AGAAGAACATGTCAAATATG+TGG | 0.508664 | 8.4:+8909746 | MS.gene57568:CDS |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 8.4:-8909445 | None:intergenic |
| ACAAACTAAAGGAAGACAAA+AGG | 0.527619 | 8.4:+8909649 | MS.gene57568:CDS |
| TGTCAAATATGTGGAGAAGA+AGG | 0.528520 | 8.4:+8909755 | MS.gene57568:CDS |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 8.4:+8909353 | MS.gene57568:CDS |
| TTTATGTGGACCTTGATACA+AGG | 0.535609 | 8.4:+8909201 | MS.gene57568:CDS |
| AGAGTCATATACTGTTTATG+TGG | 0.549358 | 8.4:+8909187 | MS.gene57568:CDS |
| AAAGGTTAGCCACTTCATCA+AGG | 0.553222 | 8.4:+8909103 | MS.gene57568:CDS |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 8.4:+8907471 | MS.gene57568:CDS |
| AGTTGAACAGTTTGATCAAG+AGG | 0.557965 | 8.4:+8908065 | MS.gene57568:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 8.4:-8908005 | None:intergenic |
| GTTGAACAGTTTGATCAAGA+GGG | 0.578599 | 8.4:+8908066 | MS.gene57568:CDS |
| GTTTCAGGACGAGCTTGCAA+AGG | 0.593760 | 8.4:+8909085 | MS.gene57568:CDS |
| AATGCTCGAGTTTCTCAACC+TGG | 0.593762 | 8.4:+8909674 | MS.gene57568:CDS |
| TGTCGTTACTATCAACATGT+TGG | 0.595608 | 8.4:-8907828 | None:intergenic |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 8.4:+8907459 | MS.gene57568:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 8.4:+8907978 | MS.gene57568:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 8.4:-8907691 | None:intergenic |
| AGTAAAGTTTGACAAAGCAG+TGG | 0.629642 | 8.4:+8908938 | MS.gene57568:intron |
| GATACAAGGGCTGCCAAATG+TGG | 0.650490 | 8.4:+8909215 | MS.gene57568:CDS |
| TTATGTGGACCTTGATACAA+GGG | 0.662546 | 8.4:+8909202 | MS.gene57568:CDS |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 8.4:-8907648 | None:intergenic |
| CAACCTGGAAGAATCAAAAG+CGG | 0.677260 | 8.4:+8909689 | MS.gene57568:CDS |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 8.4:+8907462 | MS.gene57568:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | + | chr8.4:8908286-8908305 | MS.gene57568:intron | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | + | chr8.4:8908287-8908306 | MS.gene57568:intron | 10.0% |
| !! | AATAATGGTTAAATATGATT+TGG | + | chr8.4:8908749-8908768 | MS.gene57568:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | - | chr8.4:8908749-8908768 | None:intergenic | 15.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | - | chr8.4:8908334-8908353 | None:intergenic | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | - | chr8.4:8908825-8908844 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | + | chr8.4:8908539-8908558 | MS.gene57568:intron | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | - | chr8.4:8908251-8908270 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | - | chr8.4:8908252-8908271 | None:intergenic | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | + | chr8.4:8909239-8909258 | MS.gene57568:CDS | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | + | chr8.4:8909238-8909257 | MS.gene57568:CDS | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | + | chr8.4:8909321-8909340 | MS.gene57568:CDS | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | + | chr8.4:8908763-8908782 | MS.gene57568:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | - | chr8.4:8909320-8909339 | None:intergenic | 20.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | - | chr8.4:8907956-8907975 | None:intergenic | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | - | chr8.4:8907955-8907974 | None:intergenic | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | + | chr8.4:8909031-8909050 | MS.gene57568:CDS | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | - | chr8.4:8908009-8908028 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | - | chr8.4:8908008-8908027 | None:intergenic | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | + | chr8.4:8907929-8907948 | MS.gene57568:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | - | chr8.4:8907694-8907713 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | - | chr8.4:8908534-8908553 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | + | chr8.4:8909070-8909089 | MS.gene57568:CDS | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | + | chr8.4:8907742-8907761 | MS.gene57568:CDS | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | + | chr8.4:8908713-8908732 | MS.gene57568:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | - | chr8.4:8908665-8908684 | None:intergenic | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | + | chr8.4:8907684-8907703 | MS.gene57568:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | + | chr8.4:8907748-8907767 | MS.gene57568:CDS | 25.0% |
| AACATCAAGAACTGATTGTA+AGG | + | chr8.4:8907897-8907916 | MS.gene57568:CDS | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | + | chr8.4:8909122-8909141 | MS.gene57568:CDS | 30.0% | |
| AATGTTTAGCAATGAAGGTT+CGG | + | chr8.4:8908113-8908132 | MS.gene57568:CDS | 30.0% | |
| ACAAACTAAAGGAAGACAAA+AGG | + | chr8.4:8909649-8909668 | MS.gene57568:CDS | 30.0% | |
| AGAAGAACATGTCAAATATG+TGG | + | chr8.4:8909746-8909765 | MS.gene57568:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | + | chr8.4:8909187-8909206 | MS.gene57568:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | + | chr8.4:8909123-8909142 | MS.gene57568:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | - | chr8.4:8909231-8909250 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | + | chr8.4:8907805-8907824 | MS.gene57568:CDS | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | + | chr8.4:8909265-8909284 | MS.gene57568:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | + | chr8.4:8907978-8907997 | MS.gene57568:CDS | 30.0% | |
| CAATATTCAAGATCCGATAA+TGG | + | chr8.4:8909625-8909644 | MS.gene57568:CDS | 30.0% | |
| CATGTTATGACTATCTTCTT+CGG | - | chr8.4:8907461-8907480 | None:intergenic | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | - | chr8.4:8908010-8908029 | None:intergenic | 30.0% | |
| CTCTAATTTCATACAAACCT+TGG | - | chr8.4:8908791-8908810 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | + | chr8.4:8907860-8907879 | MS.gene57568:CDS | 30.0% | |
| GCTAATATTGGCATTATATG+TGG | + | chr8.4:8909353-8909372 | MS.gene57568:CDS | 30.0% | |
| GCTTGAAAAGATCATCAAAA+AGG | + | chr8.4:8909508-8909527 | MS.gene57568:CDS | 30.0% | |
| TGATGATTCAATCCAGTAAA+TGG | - | chr8.4:8908408-8908427 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | + | chr8.4:8908796-8908815 | MS.gene57568:intron | 30.0% | |
| ! | AAACAGAGAAGTCTTTTACA+TGG | + | chr8.4:8908469-8908488 | MS.gene57568:intron | 30.0% |
| ! | ATATGTTCTCAGATTTTGCA+AGG | - | chr8.4:8909469-8909488 | None:intergenic | 30.0% |
| ! | CATCATCAGTCCATTTTATT+CGG | + | chr8.4:8908426-8908445 | MS.gene57568:intron | 30.0% |
| ! | CCAAGAGTATAAACTATCTT+AGG | + | chr8.4:8908007-8908026 | MS.gene57568:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | + | chr8.4:8908024-8908043 | MS.gene57568:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | + | chr8.4:8908023-8908042 | MS.gene57568:CDS | 30.0% |
| ! | TGAAACTCTAGTTTGTCTTT+CGG | - | chr8.4:8909549-8909568 | None:intergenic | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | + | chr8.4:8908484-8908503 | MS.gene57568:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | + | chr8.4:8908721-8908740 | MS.gene57568:intron | 30.0% |
| !!! | AATATGAAGACCTTTTTTGC+TGG | + | chr8.4:8908831-8908850 | MS.gene57568:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | + | chr8.4:8908324-8908343 | MS.gene57568:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | + | chr8.4:8908832-8908851 | MS.gene57568:intron | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | + | chr8.4:8908298-8908317 | MS.gene57568:intron | 30.0% |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | - | chr8.4:8908179-8908198 | None:intergenic | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | + | chr8.4:8909328-8909347 | MS.gene57568:CDS | 30.0% |
| AATCCAGTAAATGGTGCAAA+TGG | - | chr8.4:8908399-8908418 | None:intergenic | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | + | chr8.4:8907462-8907481 | MS.gene57568:CDS | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | + | chr8.4:8908170-8908189 | MS.gene57568:CDS | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | + | chr8.4:8908938-8908957 | MS.gene57568:intron | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | + | chr8.4:8908065-8908084 | MS.gene57568:CDS | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | - | chr8.4:8908439-8908458 | None:intergenic | 35.0% | |
| CATAAACGATGTCGAGTATT+AGG | - | chr8.4:8908594-8908613 | None:intergenic | 35.0% | |
| CGAAGAAGATAGTCATAACA+TGG | + | chr8.4:8907459-8907478 | MS.gene57568:CDS | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | + | chr8.4:8908177-8908196 | MS.gene57568:CDS | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | + | chr8.4:8908136-8908155 | MS.gene57568:CDS | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | + | chr8.4:8908771-8908790 | MS.gene57568:intron | 35.0% | |
| GCTACAATGTTTAGCAATGA+AGG | + | chr8.4:8908108-8908127 | MS.gene57568:CDS | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | - | chr8.4:8908643-8908662 | None:intergenic | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | + | chr8.4:8908066-8908085 | MS.gene57568:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | + | chr8.4:8909341-8909360 | MS.gene57568:CDS | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | - | chr8.4:8908844-8908863 | None:intergenic | 35.0% | |
| TGTCAAATATGTGGAGAAGA+AGG | + | chr8.4:8909755-8909774 | MS.gene57568:CDS | 35.0% | |
| TGTCGTTACTATCAACATGT+TGG | - | chr8.4:8907831-8907850 | None:intergenic | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | + | chr8.4:8909202-8909221 | MS.gene57568:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | + | chr8.4:8909201-8909220 | MS.gene57568:CDS | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | - | chr8.4:8908100-8908119 | None:intergenic | 35.0% |
| ! | GGTCAGATAATAAACTTGCT+TGG | - | chr8.4:8909448-8909467 | None:intergenic | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | + | chr8.4:8908491-8908510 | MS.gene57568:intron | 35.0% |
| !! | CCTTTAGTTTGTGCCATTAT+CGG | - | chr8.4:8909641-8909660 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | - | chr8.4:8907448-8907467 | None:intergenic | 35.0% |
| !! | TTGATGATCTTTTCAAGCTC+TGG | - | chr8.4:8909506-8909525 | None:intergenic | 35.0% |
| AACTCAGCTTCTTCAGTTGT+TGG | - | chr8.4:8909605-8909624 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | + | chr8.4:8907938-8907957 | MS.gene57568:CDS | 40.0% | |
| CAACCTGGAAGAATCAAAAG+CGG | + | chr8.4:8909689-8909708 | MS.gene57568:CDS | 40.0% | |
| CATCAAAAAGGCCAGAATGA+TGG | + | chr8.4:8909520-8909539 | MS.gene57568:CDS | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | + | chr8.4:8908598-8908617 | MS.gene57568:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | + | chr8.4:8908498-8908517 | MS.gene57568:intron | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | - | chr8.4:8907651-8907670 | None:intergenic | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | + | chr8.4:8908734-8908753 | MS.gene57568:intron | 40.0% | |
| GTGCCATAAAAAAATGGGTG+GGG | + | chr8.4:8908029-8908048 | MS.gene57568:CDS | 40.0% | |
| TCATAACATGGAGGACATAG+AGG | + | chr8.4:8907471-8907490 | MS.gene57568:CDS | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | + | chr8.4:8908497-8908516 | MS.gene57568:intron | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | - | chr8.4:8907652-8907671 | None:intergenic | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | + | chr8.4:8909103-8909122 | MS.gene57568:CDS | 40.0% |
| ! | AGGTGCCATAAAAAAATGGG+TGG | + | chr8.4:8908027-8908046 | MS.gene57568:CDS | 40.0% |
| ! | ATGCCATTTGCACCATTTAC+TGG | + | chr8.4:8908393-8908412 | MS.gene57568:intron | 40.0% |
| ! | CCGATAATGGCACAAACTAA+AGG | + | chr8.4:8909638-8909657 | MS.gene57568:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | - | chr8.4:8909115-8909134 | None:intergenic | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | + | chr8.4:8908028-8908047 | MS.gene57568:CDS | 40.0% |
| AATGCTCGAGTTTCTCAACC+TGG | + | chr8.4:8909674-8909693 | MS.gene57568:CDS | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | - | chr8.4:8909214-8909233 | None:intergenic | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | + | chr8.4:8908850-8908869 | MS.gene57568:intron | 45.0% | |
| GATCAAGATAAGGCGATGTG+CGG | + | chr8.4:8908549-8908568 | MS.gene57568:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | + | chr8.4:8908563-8908582 | MS.gene57568:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | - | chr8.4:8908922-8908941 | None:intergenic | 45.0% | |
| TCTTTCGGAGTCCATCATTC+TGG | - | chr8.4:8909534-8909553 | None:intergenic | 45.0% | |
| TGGAAGAATCAAAAGCGGTC+TGG | + | chr8.4:8909694-8909713 | MS.gene57568:CDS | 45.0% | |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | - | chr8.4:8908096-8908115 | None:intergenic | 45.0% |
| !! | AGACCGCTTTTGATTCTTCC+AGG | - | chr8.4:8909695-8909714 | None:intergenic | 45.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | - | chr8.4:8908035-8908054 | None:intergenic | 45.0% |
| ACTTGGCTAATGGCAATGGG+TGG | + | chr8.4:8908501-8908520 | MS.gene57568:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | + | chr8.4:8909215-8909234 | MS.gene57568:CDS | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | + | chr8.4:8909085-8909104 | MS.gene57568:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | + | chr8.4:8908304-8908323 | MS.gene57568:intron | 50.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | + | chr8.4:8908078-8908097 | MS.gene57568:CDS | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | + | chr8.4:8908308-8908327 | MS.gene57568:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 8907436 | 8909838 | 8907436 | ID=MS.gene57568 |
| chr8.4 | mRNA | 8907436 | 8909838 | 8907436 | ID=MS.gene57568.t1;Parent=MS.gene57568 |
| chr8.4 | exon | 8907436 | 8907492 | 8907436 | ID=MS.gene57568.t1.exon1;Parent=MS.gene57568.t1 |
| chr8.4 | CDS | 8907436 | 8907492 | 8907436 | ID=cds.MS.gene57568.t1;Parent=MS.gene57568.t1 |
| chr8.4 | exon | 8907619 | 8908225 | 8907619 | ID=MS.gene57568.t1.exon2;Parent=MS.gene57568.t1 |
| chr8.4 | CDS | 8907619 | 8908225 | 8907619 | ID=cds.MS.gene57568.t1;Parent=MS.gene57568.t1 |
| chr8.4 | exon | 8908940 | 8909838 | 8908940 | ID=MS.gene57568.t1.exon3;Parent=MS.gene57568.t1 |
| chr8.4 | CDS | 8908940 | 8909838 | 8908940 | ID=cds.MS.gene57568.t1;Parent=MS.gene57568.t1 |
| Gene Sequence |
| Protein sequence |
