Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57573.t1 | GAU12310.1 | 43.4 | 722 | 165 | 4 | 35 | 512 | 82 | 803 | 2.90E-140 | 508.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57573.t1 | Q9SZL7 | 34.9 | 209 | 129 | 3 | 214 | 418 | 250 | 455 | 3.1e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57573.t1 | A0A2K3L9Y4 | 38.5 | 702 | 179 | 7 | 48 | 506 | 1 | 692 | 7.0e-112 | 414.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene57573.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57573.t1 | MTR_0853s0010 | 95.570 | 158 | 7 | 0 | 20 | 177 | 1 | 158 | 6.09e-110 | 324 |
| MS.gene57573.t1 | MTR_0734s0010 | 51.064 | 188 | 85 | 4 | 328 | 510 | 1 | 186 | 5.77e-55 | 183 |
| MS.gene57573.t1 | MTR_1g019850 | 53.571 | 168 | 65 | 3 | 18 | 179 | 38 | 198 | 1.94e-51 | 176 |
| MS.gene57573.t1 | MTR_2g024230 | 55.224 | 67 | 30 | 0 | 37 | 103 | 83 | 149 | 1.96e-19 | 85.9 |
| MS.gene57573.t1 | MTR_1g033820 | 53.571 | 56 | 26 | 0 | 32 | 87 | 15 | 70 | 2.69e-15 | 72.0 |
| MS.gene57573.t1 | MTR_6g048540 | 46.250 | 80 | 42 | 1 | 336 | 414 | 106 | 185 | 3.06e-13 | 69.7 |
| MS.gene57573.t1 | MTR_6g048540 | 48.052 | 77 | 37 | 2 | 35 | 108 | 19 | 95 | 1.17e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57573.t1 | AT4G38170 | 39.735 | 151 | 89 | 1 | 214 | 362 | 250 | 400 | 1.66e-31 | 128 |
| MS.gene57573.t1 | AT4G38180 | 39.310 | 145 | 88 | 0 | 221 | 365 | 494 | 638 | 1.04e-29 | 124 |
| MS.gene57573.t1 | AT4G38180 | 28.205 | 195 | 122 | 7 | 41 | 223 | 70 | 258 | 5.27e-15 | 78.6 |
| MS.gene57573.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 294 | 433 | 3.16e-28 | 119 |
| MS.gene57573.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 439 | 578 | 3.25e-28 | 119 |
| MS.gene57573.t1 | AT2G27110 | 38.571 | 140 | 86 | 0 | 221 | 360 | 439 | 578 | 3.25e-28 | 119 |
| MS.gene57573.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57573.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57573.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57573.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57573.t1 | AT4G15090 | 38.667 | 150 | 86 | 4 | 221 | 367 | 469 | 615 | 3.06e-23 | 104 |
| MS.gene57573.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.30e-22 | 102 |
| MS.gene57573.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.30e-22 | 102 |
| MS.gene57573.t1 | AT3G06250 | 34.444 | 180 | 104 | 2 | 219 | 390 | 554 | 727 | 1.30e-22 | 102 |
| MS.gene57573.t1 | AT5G18960 | 35.664 | 143 | 92 | 0 | 223 | 365 | 590 | 732 | 5.91e-21 | 97.4 |
| MS.gene57573.t1 | AT5G18960 | 35.664 | 143 | 92 | 0 | 223 | 365 | 590 | 732 | 5.91e-21 | 97.4 |
| MS.gene57573.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.48e-18 | 88.6 |
| MS.gene57573.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.48e-18 | 88.6 |
| MS.gene57573.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.48e-18 | 88.6 |
| MS.gene57573.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.66e-18 | 88.6 |
| MS.gene57573.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.66e-18 | 88.6 |
| MS.gene57573.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 414 | 553 | 3.85e-18 | 88.6 |
| MS.gene57573.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 373 | 512 | 4.17e-18 | 88.2 |
| MS.gene57573.t1 | AT2G32250 | 32.624 | 141 | 94 | 1 | 221 | 361 | 373 | 512 | 4.52e-18 | 88.2 |
| MS.gene57573.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 1.81e-17 | 86.3 |
| MS.gene57573.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 1.81e-17 | 86.3 |
| MS.gene57573.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 1.82e-17 | 86.3 |
| MS.gene57573.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.23e-17 | 85.9 |
| MS.gene57573.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.23e-17 | 85.9 |
| MS.gene57573.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.69e-17 | 85.9 |
| MS.gene57573.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.69e-17 | 85.9 |
| MS.gene57573.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 450 | 558 | 2.81e-17 | 85.9 |
| MS.gene57573.t1 | AT1G76320 | 35.556 | 135 | 80 | 3 | 228 | 360 | 414 | 543 | 2.94e-17 | 85.5 |
| MS.gene57573.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 393 | 501 | 2.96e-17 | 85.5 |
| MS.gene57573.t1 | AT4G19990 | 40.909 | 110 | 62 | 3 | 253 | 360 | 464 | 572 | 3.01e-17 | 85.5 |
| MS.gene57573.t1 | AT3G22170 | 33.793 | 145 | 94 | 2 | 217 | 360 | 474 | 617 | 5.65e-17 | 84.7 |
| MS.gene57573.t1 | AT3G22170 | 33.793 | 145 | 94 | 2 | 217 | 360 | 474 | 617 | 5.65e-17 | 84.7 |
| MS.gene57573.t1 | AT1G80010 | 32.414 | 145 | 87 | 4 | 224 | 360 | 519 | 660 | 6.49e-15 | 78.2 |
| MS.gene57573.t1 | AT1G52520 | 31.724 | 145 | 91 | 4 | 223 | 359 | 492 | 636 | 7.11e-12 | 68.6 |
| MS.gene57573.t1 | AT1G10240 | 30.973 | 113 | 67 | 3 | 249 | 358 | 500 | 604 | 5.39e-11 | 65.9 |
| MS.gene57573.t1 | AT1G10240 | 30.973 | 113 | 67 | 3 | 249 | 358 | 500 | 604 | 5.39e-11 | 65.9 |
Find 56 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCAACTTTATGAATTTA+TGG | 0.151879 | 8.4:-9113809 | MS.gene57573:CDS |
| AAACATCTTTAAGAAGTTTC+AGG | 0.189455 | 8.4:-9113977 | MS.gene57573:CDS |
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 8.4:+9115602 | None:intergenic |
| CCTTTAGTTTGTGCCATTAT+CGG | 0.234963 | 8.4:+9113409 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 8.4:-9115363 | MS.gene57573:CDS |
| TCTTTCGGAGTCCATCATTC+TGG | 0.292595 | 8.4:+9113516 | None:intergenic |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 8.4:+9113730 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 8.4:-9115187 | MS.gene57573:CDS |
| AACTCAGCTTCTTCAGTTGT+TGG | 0.313522 | 8.4:+9113445 | None:intergenic |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 8.4:-9115040 | MS.gene57573:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 8.4:+9115094 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 8.4:+9115040 | None:intergenic |
| TGTCAACTTTATGAATTTAT+GGG | 0.343627 | 8.4:-9113808 | MS.gene57573:CDS |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 8.4:+9115041 | None:intergenic |
| GCTTGAAAAGATCATCAAAA+AGG | 0.372423 | 8.4:-9113539 | MS.gene57573:CDS |
| TGAAACTCTAGTTTGTCTTT+CGG | 0.388167 | 8.4:+9113501 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 8.4:-9113782 | MS.gene57573:CDS |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 8.4:+9115589 | None:intergenic |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 8.4:-9113706 | MS.gene57573:CDS |
| ATAAAGTTGACAACCACATT+TGG | 0.431711 | 8.4:+9113819 | None:intergenic |
| AATGTTTAGCAATGAAGGTT+CGG | 0.437737 | 8.4:-9114934 | MS.gene57573:CDS |
| GCTACAATGTTTAGCAATGA+AGG | 0.444472 | 8.4:-9114939 | MS.gene57573:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 8.4:-9115150 | MS.gene57573:CDS |
| CTTTCTCTGATAGAGATTGT+TGG | 0.446604 | 8.4:-9114911 | MS.gene57573:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 8.4:-9115242 | MS.gene57573:CDS |
| CAATATTCAAGATCCGATAA+TGG | 0.465564 | 8.4:-9113422 | MS.gene57573:CDS |
| ATTTGGCAGCCCTTGTATCA+AGG | 0.469613 | 8.4:+9113836 | None:intergenic |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 8.4:+9115398 | None:intergenic |
| TGGAAGAATCAAAAGCGGTC+TGG | 0.495399 | 8.4:-9113353 | MS.gene57573:CDS |
| GATCAAGAGGGCTTGCCTAC+CGG | 0.495549 | 8.4:-9114969 | MS.gene57573:CDS |
| CCGATAATGGCACAAACTAA+AGG | 0.499113 | 8.4:-9113409 | MS.gene57573:CDS |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 8.4:+9115095 | None:intergenic |
| AGAAGAACATGTCAAATATG+TGG | 0.508664 | 8.4:-9113301 | MS.gene57573:CDS |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 8.4:+9113602 | None:intergenic |
| ACAAACTAAAGGAAGACAAA+AGG | 0.527619 | 8.4:-9113398 | MS.gene57573:CDS |
| TGTCAAATATGTGGAGAAGA+AGG | 0.528520 | 8.4:-9113292 | MS.gene57573:CDS |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 8.4:-9113694 | MS.gene57573:CDS |
| TTTATGTGGACCTTGATACA+AGG | 0.535609 | 8.4:-9113846 | MS.gene57573:CDS |
| AGAGTCATATACTGTTTATG+TGG | 0.549358 | 8.4:-9113860 | MS.gene57573:CDS |
| AAAGGTTAGCCACTTCATCA+AGG | 0.553222 | 8.4:-9113944 | MS.gene57573:CDS |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 8.4:-9115576 | MS.gene57573:intron |
| AGTTGAACAGTTTGATCAAG+AGG | 0.557965 | 8.4:-9114982 | MS.gene57573:CDS |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 8.4:+9115042 | None:intergenic |
| GTTGAACAGTTTGATCAAGA+GGG | 0.578599 | 8.4:-9114981 | MS.gene57573:CDS |
| GTTTCAGGACGAGCTTGCAA+AGG | 0.593760 | 8.4:-9113962 | MS.gene57573:CDS |
| AATGCTCGAGTTTCTCAACC+TGG | 0.593762 | 8.4:-9113373 | MS.gene57573:CDS |
| TGTCGTTACTATCAACATGT+TGG | 0.595608 | 8.4:+9115219 | None:intergenic |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 8.4:-9115588 | MS.gene57573:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 8.4:-9115069 | MS.gene57573:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 8.4:+9115356 | None:intergenic |
| AGTAAAGTTTGACAAAGCAG+TGG | 0.629642 | 8.4:-9114109 | MS.gene57573:CDS |
| GATACAAGGGCTGCCAAATG+TGG | 0.650490 | 8.4:-9113832 | MS.gene57573:CDS |
| TTATGTGGACCTTGATACAA+GGG | 0.662546 | 8.4:-9113845 | MS.gene57573:CDS |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 8.4:+9115399 | None:intergenic |
| CAACCTGGAAGAATCAAAAG+CGG | 0.677260 | 8.4:-9113358 | MS.gene57573:CDS |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 8.4:-9115585 | MS.gene57573:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+TGG | - | chr8.4:9114081-9114100 | MS.gene57573:CDS | 10.0% |
| !!! | TAGAATGATTAATTTTTTTT+GGG | - | chr8.4:9114082-9114101 | MS.gene57573:CDS | 10.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr8.4:9114544-9114563 | MS.gene57573:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr8.4:9114544-9114563 | None:intergenic | 15.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr8.4:9114129-9114148 | None:intergenic | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr8.4:9114620-9114639 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr8.4:9114334-9114353 | MS.gene57573:intron | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr8.4:9114046-9114065 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr8.4:9114047-9114066 | None:intergenic | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr8.4:9115034-9115053 | MS.gene57573:CDS | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr8.4:9115033-9115052 | MS.gene57573:CDS | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr8.4:9115116-9115135 | MS.gene57573:CDS | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr8.4:9114558-9114577 | MS.gene57573:intron | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr8.4:9115115-9115134 | None:intergenic | 20.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr8.4:9113751-9113770 | None:intergenic | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr8.4:9113750-9113769 | None:intergenic | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr8.4:9114826-9114845 | MS.gene57573:intron | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr8.4:9113804-9113823 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr8.4:9113803-9113822 | None:intergenic | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr8.4:9113724-9113743 | MS.gene57573:CDS | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr8.4:9113489-9113508 | None:intergenic | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr8.4:9114865-9114884 | MS.gene57573:CDS | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr8.4:9113537-9113556 | MS.gene57573:CDS | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr8.4:9114508-9114527 | MS.gene57573:intron | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr8.4:9114460-9114479 | None:intergenic | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr8.4:9113479-9113498 | MS.gene57573:CDS | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr8.4:9113543-9113562 | MS.gene57573:CDS | 25.0% |
| AACATCAAGAACTGATTGTA+AGG | - | chr8.4:9113692-9113711 | MS.gene57573:CDS | 30.0% | |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr8.4:9114917-9114936 | MS.gene57573:CDS | 30.0% | |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr8.4:9113908-9113927 | MS.gene57573:CDS | 30.0% | |
| ACAAACTAAAGGAAGACAAA+AGG | - | chr8.4:9115444-9115463 | MS.gene57573:intron | 30.0% | |
| AGAAGAACATGTCAAATATG+TGG | - | chr8.4:9115541-9115560 | MS.gene57573:intron | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr8.4:9114982-9115001 | MS.gene57573:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr8.4:9114918-9114937 | MS.gene57573:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr8.4:9115026-9115045 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr8.4:9113600-9113619 | MS.gene57573:CDS | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr8.4:9115060-9115079 | MS.gene57573:CDS | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr8.4:9113773-9113792 | MS.gene57573:CDS | 30.0% | |
| CAATATTCAAGATCCGATAA+TGG | - | chr8.4:9115420-9115439 | MS.gene57573:CDS | 30.0% | |
| CATGTTATGACTATCTTCTT+CGG | + | chr8.4:9113256-9113275 | None:intergenic | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr8.4:9113805-9113824 | None:intergenic | 30.0% | |
| CTCTAATTTCATACAAACCT+TGG | + | chr8.4:9114586-9114605 | None:intergenic | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr8.4:9113655-9113674 | MS.gene57573:CDS | 30.0% | |
| GCTAATATTGGCATTATATG+TGG | - | chr8.4:9115148-9115167 | MS.gene57573:CDS | 30.0% | |
| GCTTGAAAAGATCATCAAAA+AGG | - | chr8.4:9115303-9115322 | MS.gene57573:CDS | 30.0% | |
| TGATGATTCAATCCAGTAAA+TGG | + | chr8.4:9114203-9114222 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr8.4:9114591-9114610 | MS.gene57573:intron | 30.0% | |
| ! | AAACAGAGAAGTCTTTTACA+TGG | - | chr8.4:9114264-9114283 | MS.gene57573:intron | 30.0% |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr8.4:9115264-9115283 | None:intergenic | 30.0% |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr8.4:9114221-9114240 | MS.gene57573:intron | 30.0% |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr8.4:9113802-9113821 | MS.gene57573:CDS | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr8.4:9113819-9113838 | MS.gene57573:CDS | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr8.4:9113818-9113837 | MS.gene57573:CDS | 30.0% |
| ! | TGAAACTCTAGTTTGTCTTT+CGG | + | chr8.4:9115344-9115363 | None:intergenic | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr8.4:9114279-9114298 | MS.gene57573:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | - | chr8.4:9114516-9114535 | MS.gene57573:intron | 30.0% |
| !!! | AATATGAAGACCTTTTTTGC+TGG | - | chr8.4:9114626-9114645 | MS.gene57573:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr8.4:9114119-9114138 | MS.gene57573:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | - | chr8.4:9114627-9114646 | MS.gene57573:intron | 30.0% |
| !!! | ATTTTTTTTGGGTTGATGCA+AGG | - | chr8.4:9114093-9114112 | MS.gene57573:CDS | 30.0% |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | + | chr8.4:9113974-9113993 | None:intergenic | 30.0% |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr8.4:9115123-9115142 | MS.gene57573:CDS | 30.0% |
| AATCCAGTAAATGGTGCAAA+TGG | + | chr8.4:9114194-9114213 | None:intergenic | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | - | chr8.4:9113257-9113276 | MS.gene57573:CDS | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | - | chr8.4:9113965-9113984 | MS.gene57573:CDS | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr8.4:9114733-9114752 | MS.gene57573:intron | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr8.4:9113860-9113879 | MS.gene57573:CDS | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr8.4:9114234-9114253 | None:intergenic | 35.0% | |
| CATAAACGATGTCGAGTATT+AGG | + | chr8.4:9114389-9114408 | None:intergenic | 35.0% | |
| CGAAGAAGATAGTCATAACA+TGG | - | chr8.4:9113254-9113273 | MS.gene57573:CDS | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | - | chr8.4:9113972-9113991 | MS.gene57573:CDS | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr8.4:9113931-9113950 | MS.gene57573:CDS | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr8.4:9114566-9114585 | MS.gene57573:intron | 35.0% | |
| GCTACAATGTTTAGCAATGA+AGG | - | chr8.4:9113903-9113922 | MS.gene57573:CDS | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr8.4:9114438-9114457 | None:intergenic | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr8.4:9113861-9113880 | MS.gene57573:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr8.4:9115136-9115155 | MS.gene57573:CDS | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | + | chr8.4:9114639-9114658 | None:intergenic | 35.0% | |
| TGTCAAATATGTGGAGAAGA+AGG | - | chr8.4:9115550-9115569 | MS.gene57573:intron | 35.0% | |
| TGTCGTTACTATCAACATGT+TGG | + | chr8.4:9113626-9113645 | None:intergenic | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr8.4:9114997-9115016 | MS.gene57573:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr8.4:9114996-9115015 | MS.gene57573:CDS | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr8.4:9113895-9113914 | None:intergenic | 35.0% |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr8.4:9115243-9115262 | None:intergenic | 35.0% |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr8.4:9114286-9114305 | MS.gene57573:intron | 35.0% |
| !! | CCTTTAGTTTGTGCCATTAT+CGG | + | chr8.4:9115436-9115455 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | + | chr8.4:9113243-9113262 | None:intergenic | 35.0% |
| !! | TTGATGATCTTTTCAAGCTC+TGG | + | chr8.4:9115301-9115320 | None:intergenic | 35.0% |
| AACTCAGCTTCTTCAGTTGT+TGG | + | chr8.4:9115400-9115419 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr8.4:9113733-9113752 | MS.gene57573:CDS | 40.0% | |
| CAACCTGGAAGAATCAAAAG+CGG | - | chr8.4:9115484-9115503 | MS.gene57573:intron | 40.0% | |
| CATCAAAAAGGCCAGAATGA+TGG | - | chr8.4:9115315-9115334 | MS.gene57573:CDS | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr8.4:9114393-9114412 | MS.gene57573:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr8.4:9114293-9114312 | MS.gene57573:intron | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr8.4:9113446-9113465 | None:intergenic | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | - | chr8.4:9114529-9114548 | MS.gene57573:intron | 40.0% | |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr8.4:9113824-9113843 | MS.gene57573:CDS | 40.0% | |
| TCATAACATGGAGGACATAG+AGG | - | chr8.4:9113266-9113285 | MS.gene57573:CDS | 40.0% | |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr8.4:9114292-9114311 | MS.gene57573:intron | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr8.4:9113447-9113466 | None:intergenic | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr8.4:9114898-9114917 | MS.gene57573:CDS | 40.0% |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr8.4:9113822-9113841 | MS.gene57573:CDS | 40.0% |
| ! | ATGCCATTTGCACCATTTAC+TGG | - | chr8.4:9114188-9114207 | MS.gene57573:intron | 40.0% |
| ! | CCGATAATGGCACAAACTAA+AGG | - | chr8.4:9115433-9115452 | MS.gene57573:intron | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr8.4:9114910-9114929 | None:intergenic | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr8.4:9113823-9113842 | MS.gene57573:CDS | 40.0% |
| AATGCTCGAGTTTCTCAACC+TGG | - | chr8.4:9115469-9115488 | MS.gene57573:intron | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr8.4:9115009-9115028 | None:intergenic | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr8.4:9114645-9114664 | MS.gene57573:intron | 45.0% | |
| GATCAAGATAAGGCGATGTG+CGG | - | chr8.4:9114344-9114363 | MS.gene57573:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr8.4:9114358-9114377 | MS.gene57573:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr8.4:9114717-9114736 | None:intergenic | 45.0% | |
| TCTTTCGGAGTCCATCATTC+TGG | + | chr8.4:9115329-9115348 | None:intergenic | 45.0% | |
| TGGAAGAATCAAAAGCGGTC+TGG | - | chr8.4:9115489-9115508 | MS.gene57573:intron | 45.0% | |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr8.4:9113891-9113910 | None:intergenic | 45.0% |
| !! | AGACCGCTTTTGATTCTTCC+AGG | + | chr8.4:9115490-9115509 | None:intergenic | 45.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr8.4:9113830-9113849 | None:intergenic | 45.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr8.4:9114296-9114315 | MS.gene57573:intron | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr8.4:9115010-9115029 | MS.gene57573:CDS | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr8.4:9114880-9114899 | MS.gene57573:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr8.4:9114099-9114118 | MS.gene57573:CDS | 50.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr8.4:9113873-9113892 | MS.gene57573:CDS | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr8.4:9114103-9114122 | MS.gene57573:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 9113231 | 9115633 | 9113231 | ID=MS.gene57573 |
| chr8.4 | mRNA | 9113231 | 9115633 | 9113231 | ID=MS.gene57573.t1;Parent=MS.gene57573 |
| chr8.4 | exon | 9115577 | 9115633 | 9115577 | ID=MS.gene57573.t1.exon1;Parent=MS.gene57573.t1 |
| chr8.4 | CDS | 9115577 | 9115633 | 9115577 | ID=cds.MS.gene57573.t1;Parent=MS.gene57573.t1 |
| chr8.4 | exon | 9114844 | 9115450 | 9114844 | ID=MS.gene57573.t1.exon2;Parent=MS.gene57573.t1 |
| chr8.4 | CDS | 9114844 | 9115450 | 9114844 | ID=cds.MS.gene57573.t1;Parent=MS.gene57573.t1 |
| chr8.4 | exon | 9113231 | 9114129 | 9113231 | ID=MS.gene57573.t1.exon3;Parent=MS.gene57573.t1 |
| chr8.4 | CDS | 9113231 | 9114129 | 9113231 | ID=cds.MS.gene57573.t1;Parent=MS.gene57573.t1 |
| Gene Sequence |
| Protein sequence |
