AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57840.t1 MTR_7g005280 64.865 259 22 8 1 193 1 256 1.15e-93 273
MS.gene57840.t1 MTR_7g070140 56.497 177 21 3 17 193 14 134 1.04e-55 173
MS.gene57840.t1 MTR_7g070150 70.270 111 14 2 58 168 1 92 1.80e-46 148
MS.gene57840.t1 MTR_8g099750 46.565 131 60 2 1 122 46 175 1.15e-34 122
MS.gene57840.t1 MTR_1g069805 40.000 165 92 2 22 180 65 228 4.89e-33 119
MS.gene57840.t1 MTR_3g098810 36.444 225 73 6 1 167 1 213 1.02e-32 117
MS.gene57840.t1 MTR_4g035590 44.776 134 56 6 4 122 37 167 8.48e-32 118
MS.gene57840.t1 MTR_4g108760 47.967 123 55 4 20 135 70 190 1.37e-31 117
MS.gene57840.t1 MTR_4g036030 45.161 124 54 4 4 115 36 157 1.86e-31 117
MS.gene57840.t1 MTR_3g109340 40.260 154 80 3 20 161 75 228 2.38e-31 117
MS.gene57840.t1 MTR_3g109340 40.000 155 80 3 20 161 75 229 3.83e-31 116
MS.gene57840.t1 MTR_1g008740 50.862 116 49 3 21 134 82 191 8.21e-31 115
MS.gene57840.t1 MTR_1g008740 50.862 116 49 3 21 134 68 177 9.45e-31 115
MS.gene57840.t1 MTR_7g097090 54.945 91 40 1 22 112 65 154 1.88e-30 113
MS.gene57840.t1 MTR_4g081870 52.830 106 41 3 20 118 62 165 3.67e-30 112
MS.gene57840.t1 MTR_4g089135 47.934 121 37 2 20 114 68 188 1.53e-29 112
MS.gene57840.t1 MTR_5g041940 51.456 103 41 2 20 115 56 156 1.55e-29 110
MS.gene57840.t1 MTR_1g096430 47.222 108 54 2 18 124 61 166 3.19e-29 110
MS.gene57840.t1 MTR_3g064580 54.128 109 42 5 10 114 53 157 3.89e-29 113
MS.gene57840.t1 MTR_5g021710 42.742 124 57 4 4 115 37 158 4.26e-29 110
MS.gene57840.t1 MTR_2g062730 43.548 124 57 4 4 115 39 161 4.87e-29 110
MS.gene57840.t1 MTR_8g076110 42.742 124 57 4 4 115 35 156 5.08e-29 109
MS.gene57840.t1 MTR_2g064090 51.429 105 43 3 14 114 57 157 5.30e-29 110
MS.gene57840.t1 MTR_2g078700 48.077 104 49 1 20 118 76 179 7.15e-29 110
MS.gene57840.t1 MTR_5g012080 40.945 127 61 4 4 117 36 161 8.33e-29 110
MS.gene57840.t1 MTR_2g080010 43.704 135 51 3 20 129 68 202 1.02e-28 109
MS.gene57840.t1 MTR_2157s0010 50.926 108 40 3 20 114 61 168 1.39e-28 107
MS.gene57840.t1 MTR_6g032770 43.333 120 56 2 13 120 57 176 1.49e-28 109
MS.gene57840.t1 MTR_2g093810 43.333 120 59 2 1 111 46 165 2.49e-28 108
MS.gene57840.t1 MTR_2g064470 39.706 136 71 3 21 152 63 191 3.10e-28 107
MS.gene57840.t1 MTR_4g101680 42.742 124 57 4 4 115 36 157 4.67e-28 108
MS.gene57840.t1 MTR_5g076850 43.382 136 62 6 10 142 53 176 9.60e-28 109
MS.gene57840.t1 MTR_7g100990 44.167 120 58 3 1 111 43 162 1.06e-27 106
MS.gene57840.t1 MTR_3g070030 49.091 110 48 3 20 123 72 179 1.20e-27 107
MS.gene57840.t1 MTR_7g085220 43.750 128 49 5 13 118 47 173 1.53e-27 106
MS.gene57840.t1 MTR_3g435150 45.536 112 54 2 20 126 69 178 1.59e-27 105
MS.gene57840.t1 MTR_6g012670 42.857 112 57 2 20 126 73 182 1.77e-27 105
MS.gene57840.t1 MTR_6g084430 49.020 102 49 2 20 120 58 157 1.89e-27 105
MS.gene57840.t1 MTR_8g024480 39.073 151 62 5 4 131 44 187 2.62e-27 107
MS.gene57840.t1 MTR_2g079990 50.000 110 50 2 20 126 69 176 8.76e-27 104
MS.gene57840.t1 MTR_6g477900 45.714 105 46 3 22 123 63 159 2.37e-26 101
MS.gene57840.t1 MTR_3g088110 51.961 102 40 3 20 115 60 158 3.50e-26 102
MS.gene57840.t1 MTR_7g011130 40.972 144 63 4 20 145 72 211 3.65e-26 102
MS.gene57840.t1 MTR_8g094580 48.544 103 43 2 20 115 6 105 6.53e-26 99.8
MS.gene57840.t1 MTR_8g063550 37.405 131 68 3 1 128 51 170 1.05e-25 101
MS.gene57840.t1 MTR_8g063550 37.405 131 68 3 1 128 51 170 1.38e-25 102
MS.gene57840.t1 MTR_8g467490 34.409 186 99 4 20 187 67 247 1.53e-25 102
MS.gene57840.t1 MTR_8g063550 37.405 131 68 3 1 128 51 170 2.09e-25 102
MS.gene57840.t1 MTR_3g116070 51.190 84 41 0 20 103 77 160 2.15e-25 100
MS.gene57840.t1 MTR_8g094580 48.544 103 43 2 20 115 60 159 2.69e-25 99.4
MS.gene57840.t1 MTR_3g098810 40.397 151 43 3 1 104 1 151 3.00e-25 96.7
MS.gene57840.t1 MTR_3g096920 50.980 102 41 3 20 115 60 158 3.45e-25 99.4
MS.gene57840.t1 MTR_7g011120 45.763 118 49 4 20 124 61 176 5.07e-25 99.4
MS.gene57840.t1 MTR_1g090723 45.536 112 56 2 20 128 64 173 5.68e-25 101
MS.gene57840.t1 MTR_3g093050 40.945 127 60 3 20 143 77 191 6.06e-25 101
MS.gene57840.t1 MTR_5g014300 37.931 145 80 3 14 150 57 199 6.08e-25 99.4
MS.gene57840.t1 MTR_0036s0150 45.946 111 56 2 20 128 61 169 6.33e-25 101
MS.gene57840.t1 MTR_3g093050 40.945 127 60 3 20 143 77 191 6.38e-25 101
MS.gene57840.t1 MTR_8g059170 49.057 106 47 3 20 120 67 170 6.46e-25 99.4
MS.gene57840.t1 MTR_7g085260 49.020 102 45 3 20 114 70 171 7.38e-25 99.8
MS.gene57840.t1 MTR_5g069030 50.515 97 43 2 22 115 82 176 8.36e-25 101
MS.gene57840.t1 MTR_1g090723 45.045 111 57 2 20 128 64 172 1.20e-24 100
MS.gene57840.t1 MTR_1g090723 45.045 111 57 2 20 128 64 172 1.25e-24 100
MS.gene57840.t1 MTR_8g093580 32.680 153 89 3 1 150 51 192 2.07e-24 99.8
MS.gene57840.t1 MTR_3g093040 46.000 100 49 2 18 114 161 258 2.59e-24 97.4
MS.gene57840.t1 MTR_5g040420 39.130 115 59 1 20 123 67 181 5.45e-24 97.8
MS.gene57840.t1 MTR_4g075980 44.792 96 50 2 20 114 68 161 8.70e-24 95.9
MS.gene57840.t1 MTR_5g090970 37.195 164 83 6 1 150 50 207 9.86e-24 95.9
MS.gene57840.t1 MTR_3g096140 43.697 119 58 4 14 128 58 171 1.01e-23 95.1
MS.gene57840.t1 MTR_5g090970 40.278 144 67 5 20 150 71 208 1.84e-23 95.1
MS.gene57840.t1 MTR_3g096140 43.966 116 56 4 17 128 40 150 2.17e-23 95.1
MS.gene57840.t1 MTR_3g070040 47.525 101 38 3 30 120 68 163 2.19e-23 95.1
MS.gene57840.t1 MTR_3g096140 43.966 116 56 4 17 128 61 171 2.73e-23 95.1
MS.gene57840.t1 MTR_4g134460 45.631 103 52 3 20 121 107 206 8.43e-23 94.7
MS.gene57840.t1 MTR_2g079990 39.855 138 50 2 20 126 69 204 1.34e-22 93.6
MS.gene57840.t1 MTR_2g068880 36.735 147 73 4 1 128 54 199 1.60e-22 92.4
MS.gene57840.t1 MTR_1g097300 38.889 126 61 4 1 122 64 177 2.24e-22 94.0
MS.gene57840.t1 MTR_4g098630 44.762 105 52 3 14 114 57 159 5.89e-22 91.3
MS.gene57840.t1 MTR_1g090720 44.348 115 51 3 20 124 97 208 1.73e-21 91.3
MS.gene57840.t1 MTR_2g068920 38.095 147 69 6 1 127 53 197 3.36e-21 88.6
MS.gene57840.t1 MTR_3g096920 56.579 76 30 1 20 95 60 132 4.95e-21 89.0
MS.gene57840.t1 MTR_8g023840 44.565 92 48 2 20 111 67 155 2.44e-20 87.8
MS.gene57840.t1 MTR_2g086880 45.556 90 43 2 22 111 74 157 3.23e-20 87.8
MS.gene57840.t1 MTR_6g011860 40.187 107 51 3 20 114 68 173 3.32e-20 87.0
MS.gene57840.t1 MTR_2g086880 44.565 92 45 2 20 111 72 157 4.09e-20 87.4
MS.gene57840.t1 MTR_5g061450 66.667 84 12 4 113 193 14 84 5.98e-18 75.1
MS.gene57840.t1 MTR_8g023900 40.000 95 54 2 20 114 249 340 1.80e-16 77.0
MS.gene57840.t1 MTR_8g023900 36.842 95 59 1 20 114 68 161 9.74e-15 72.0
MS.gene57840.t1 MTR_2g086690 39.806 103 54 4 17 113 61 161 4.16e-16 74.3
MS.gene57840.t1 MTR_5g061420 66.667 84 12 4 113 193 14 84 5.62e-16 70.1
MS.gene57840.t1 MTR_4g052620 40.404 99 52 3 21 113 64 161 8.52e-16 73.6
MS.gene57840.t1 MTR_8g023860 35.870 92 56 2 20 111 68 156 4.51e-15 72.8
MS.gene57840.t1 MTR_7g105170 31.361 169 89 8 18 170 62 219 5.05e-15 71.2
MS.gene57840.t1 MTR_8g023930 37.895 95 56 2 20 114 80 171 7.14e-14 69.3
MS.gene57840.t1 MTR_4g094302 36.559 93 49 2 39 122 75 166 1.21e-13 66.6
MS.gene57840.t1 MTR_8g023880 37.624 101 54 3 38 137 95 187 6.61e-13 65.9
MS.gene57840.t1 MTR_8g093790 37.864 103 46 5 20 122 62 146 3.93e-12 62.4
MS.gene57840.t1 MTR_4g094302 46.429 56 30 0 39 94 75 130 5.24e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57840.t1 AT5G13180 69.444 108 31 1 16 121 60 167 8.26e-52 167
MS.gene57840.t1 AT2G33480 67.961 103 30 2 16 117 61 161 3.20e-45 150
MS.gene57840.t1 AT2G33480 66.667 105 30 2 16 117 61 163 6.32e-45 150
MS.gene57840.t1 AT2G33480 66.346 104 30 2 17 117 5 106 7.67e-45 148
MS.gene57840.t1 AT1G33280 45.161 124 55 3 3 115 36 157 2.36e-33 121
MS.gene57840.t1 AT2G24430 54.902 102 44 1 21 120 70 171 3.63e-33 120
MS.gene57840.t1 AT2G24430 54.902 102 44 1 21 120 70 171 3.63e-33 120
MS.gene57840.t1 AT4G10350 44.882 127 54 4 3 115 37 161 1.20e-32 120
MS.gene57840.t1 AT1G12260 43.077 130 60 4 3 120 35 162 1.27e-32 120
MS.gene57840.t1 AT4G10350 52.525 99 42 2 20 115 18 114 1.34e-32 119
MS.gene57840.t1 AT1G12260 43.077 130 60 4 3 120 35 162 3.63e-32 119
MS.gene57840.t1 AT1G62700 43.411 129 59 4 3 119 35 161 1.18e-31 118
MS.gene57840.t1 AT1G62700 43.411 129 59 4 3 119 35 161 1.18e-31 118
MS.gene57840.t1 AT2G18060 35.468 203 103 8 4 187 38 231 1.32e-30 115
MS.gene57840.t1 AT2G18060 35.468 203 103 8 4 187 38 231 1.32e-30 115
MS.gene57840.t1 AT5G39610 39.865 148 74 4 20 154 73 218 2.15e-30 112
MS.gene57840.t1 AT5G62380 45.600 125 54 4 3 115 35 157 2.73e-30 114
MS.gene57840.t1 AT5G62380 45.600 125 54 4 3 115 35 157 2.73e-30 114
MS.gene57840.t1 AT5G61430 50.943 106 45 3 20 120 6 109 2.98e-30 112
MS.gene57840.t1 AT5G66300 43.651 126 54 5 4 115 41 163 5.47e-30 112
MS.gene57840.t1 AT5G07680 50.943 106 45 3 20 120 56 159 6.77e-30 112
MS.gene57840.t1 AT5G07680 50.943 106 45 3 20 120 70 173 7.73e-30 112
MS.gene57840.t1 AT1G76420 50.526 95 45 1 20 112 75 169 8.87e-30 112
MS.gene57840.t1 AT5G61430 50.943 106 45 3 20 120 69 172 1.14e-29 112
MS.gene57840.t1 AT4G36160 39.394 165 66 7 4 156 43 185 1.53e-29 112
MS.gene57840.t1 AT3G18400 43.871 155 78 5 20 172 58 205 1.79e-29 111
MS.gene57840.t1 AT4G36160 39.394 165 66 7 4 156 39 181 1.85e-29 112
MS.gene57840.t1 AT4G36160 39.394 165 66 7 4 156 39 181 1.85e-29 112
MS.gene57840.t1 AT1G77450 48.739 119 46 4 20 126 63 178 3.01e-29 109
MS.gene57840.t1 AT3G15510 49.107 112 43 2 20 117 70 181 3.45e-29 111
MS.gene57840.t1 AT4G28530 52.083 96 45 1 21 116 80 174 3.85e-29 110
MS.gene57840.t1 AT3G15170 50.000 100 45 2 20 114 73 172 7.38e-29 109
MS.gene57840.t1 AT1G69490 53.333 105 40 2 20 117 62 164 9.15e-29 108
MS.gene57840.t1 AT1G61110 50.909 110 38 3 20 114 69 177 9.97e-29 109
MS.gene57840.t1 AT3G12977 51.456 103 44 3 21 119 19 119 1.31e-28 106
MS.gene57840.t1 AT4G35580 47.727 132 59 4 22 150 66 190 1.54e-28 111
MS.gene57840.t1 AT4G35580 47.727 132 59 4 22 150 66 190 1.59e-28 111
MS.gene57840.t1 AT4G35580 47.727 132 59 4 22 150 66 190 1.64e-28 111
MS.gene57840.t1 AT3G04070 51.351 111 41 3 20 117 63 173 1.85e-28 108
MS.gene57840.t1 AT5G18270 51.000 100 43 2 20 114 74 172 4.16e-28 107
MS.gene57840.t1 AT5G18270 51.000 100 43 2 20 114 74 172 4.25e-28 107
MS.gene57840.t1 AT1G56010 41.221 131 60 3 21 145 7 126 4.90e-28 106
MS.gene57840.t1 AT5G53950 45.872 109 54 1 20 123 70 178 4.91e-28 108
MS.gene57840.t1 AT1G54330 54.455 101 42 2 14 114 57 153 6.81e-28 106
MS.gene57840.t1 AT1G71930 50.000 96 45 2 20 114 65 158 7.86e-28 107
MS.gene57840.t1 AT1G71930 50.000 96 45 2 20 114 65 158 7.86e-28 107
MS.gene57840.t1 AT4G27410 47.748 111 53 2 20 127 67 175 8.77e-28 106
MS.gene57840.t1 AT3G12977 51.456 103 44 3 21 119 72 172 9.84e-28 105
MS.gene57840.t1 AT3G03200 35.079 191 110 4 10 190 53 239 1.20e-27 108
MS.gene57840.t1 AT1G56010 40.441 136 64 3 24 153 77 201 1.37e-27 106
MS.gene57840.t1 AT4G27410 47.748 111 53 2 20 127 84 192 1.44e-27 106
MS.gene57840.t1 AT1G65910 47.222 108 50 3 10 114 53 156 1.64e-27 108
MS.gene57840.t1 AT1G79580 50.515 97 45 2 20 115 73 167 1.73e-27 107
MS.gene57840.t1 AT1G79580 50.515 97 45 2 20 115 73 167 1.73e-27 107
MS.gene57840.t1 AT1G79580 50.515 97 45 2 20 115 73 167 1.73e-27 107
MS.gene57840.t1 AT1G79580 50.515 97 45 2 20 115 73 167 1.73e-27 107
MS.gene57840.t1 AT1G79580 50.515 97 45 2 20 115 73 167 1.73e-27 107
MS.gene57840.t1 AT1G33060 51.020 98 43 2 20 114 79 174 3.96e-27 107
MS.gene57840.t1 AT1G33060 51.020 98 43 2 20 114 79 174 4.10e-27 107
MS.gene57840.t1 AT5G17260 47.619 105 49 2 20 120 61 163 5.16e-27 106
MS.gene57840.t1 AT3G04060 52.000 100 42 3 20 114 73 171 5.23e-27 105
MS.gene57840.t1 AT3G10500 47.788 113 52 3 13 122 59 167 7.32e-27 106
MS.gene57840.t1 AT5G63790 43.165 139 63 3 20 150 103 233 1.30e-26 103
MS.gene57840.t1 AT5G04410 50.000 104 47 2 22 122 66 167 1.53e-26 105
MS.gene57840.t1 AT1G32770 31.308 214 111 8 4 188 45 251 1.54e-26 103
MS.gene57840.t1 AT5G63790 43.165 139 63 3 20 150 113 243 1.60e-26 103
MS.gene57840.t1 AT5G46590 43.590 117 59 3 14 126 57 170 1.61e-26 102
MS.gene57840.t1 AT1G01720 49.091 110 46 3 20 122 60 166 2.30e-26 102
MS.gene57840.t1 AT3G10480 45.000 120 51 3 20 135 82 190 2.76e-26 104
MS.gene57840.t1 AT5G08790 50.962 104 40 3 20 115 60 160 3.14e-26 102
MS.gene57840.t1 AT1G52890 45.833 120 56 3 20 132 67 184 3.22e-26 102
MS.gene57840.t1 AT3G04070 45.669 127 40 3 20 117 63 189 3.49e-26 103
MS.gene57840.t1 AT2G46770 38.129 139 57 4 4 115 45 181 4.01e-26 103
MS.gene57840.t1 AT3G10480 45.000 120 51 3 20 135 115 223 4.15e-26 104
MS.gene57840.t1 AT3G10490 44.167 120 52 3 20 135 82 190 5.04e-26 100
MS.gene57840.t1 AT3G17730 45.833 96 47 2 22 114 63 156 5.71e-26 100
MS.gene57840.t1 AT3G15500 48.571 105 49 2 20 121 67 169 1.17e-25 101
MS.gene57840.t1 AT2G17040 33.516 182 103 5 20 185 59 238 1.74e-25 99.8
MS.gene57840.t1 AT3G10480 44.538 119 52 3 20 135 82 189 2.65e-25 101
MS.gene57840.t1 AT3G10490 44.167 120 52 3 20 135 82 190 5.52e-25 100
MS.gene57840.t1 AT3G29035 46.226 106 50 2 20 120 77 180 6.46e-25 99.0
MS.gene57840.t1 AT2G02450 40.602 133 70 4 20 151 104 228 1.28e-24 99.4
MS.gene57840.t1 AT2G02450 40.602 133 70 4 20 151 104 228 1.96e-24 99.0
MS.gene57840.t1 AT3G61910 37.681 138 57 5 4 114 40 175 2.75e-24 97.8
MS.gene57840.t1 AT1G52880 46.903 113 47 2 20 119 70 182 3.87e-24 97.1
MS.gene57840.t1 AT1G34190 45.763 118 53 5 10 122 63 174 2.32e-23 97.1
MS.gene57840.t1 AT5G46590 46.739 92 46 2 14 105 57 145 5.36e-23 93.2
MS.gene57840.t1 AT4G17980 42.727 110 56 2 10 114 53 160 5.47e-23 92.8
MS.gene57840.t1 AT4G17980 42.727 110 56 2 10 114 53 160 7.78e-23 93.2
MS.gene57840.t1 AT5G09330 34.667 150 82 4 1 145 51 189 1.11e-22 94.7
MS.gene57840.t1 AT5G09330 34.667 150 82 4 1 145 51 189 1.11e-22 94.7
MS.gene57840.t1 AT5G09330 34.667 150 82 4 1 145 51 189 1.11e-22 94.7
MS.gene57840.t1 AT5G09330 34.667 150 82 4 1 145 51 189 1.11e-22 94.7
MS.gene57840.t1 AT5G09330 34.667 150 82 4 1 145 51 189 1.11e-22 94.7
MS.gene57840.t1 AT3G49530 43.878 98 51 2 20 114 68 164 1.48e-22 94.4
MS.gene57840.t1 AT1G32510 37.179 156 75 6 14 149 57 209 1.53e-22 92.0
MS.gene57840.t1 AT3G49530 43.878 98 51 2 20 114 68 164 1.85e-22 93.6
MS.gene57840.t1 AT1G34180 36.735 147 81 4 20 162 71 209 3.34e-22 93.2
MS.gene57840.t1 AT1G34180 36.735 147 81 4 20 162 83 221 3.79e-22 93.2
MS.gene57840.t1 AT1G34180 36.735 147 81 4 20 162 83 221 6.57e-22 92.8
MS.gene57840.t1 AT1G34180 36.735 147 81 4 20 162 71 209 6.81e-22 92.8
MS.gene57840.t1 AT5G64060 41.176 102 55 2 24 122 65 164 7.71e-22 91.3
MS.gene57840.t1 AT5G24590 44.660 103 45 3 20 115 68 165 1.05e-21 91.7
MS.gene57840.t1 AT5G22290 37.500 128 75 2 20 147 75 197 1.37e-21 90.5
MS.gene57840.t1 AT1G26870 31.579 171 96 5 1 150 48 218 3.02e-21 90.5
MS.gene57840.t1 AT5G39820 36.885 122 53 2 20 117 73 194 6.21e-21 88.6
MS.gene57840.t1 AT3G12910 42.202 109 47 3 20 112 75 183 6.54e-21 88.2
MS.gene57840.t1 AT2G27300 43.478 92 46 2 20 111 68 153 3.89e-20 86.7
MS.gene57840.t1 AT2G43000 43.396 106 53 4 20 121 71 173 4.13e-20 85.5
MS.gene57840.t1 AT4G01550 37.600 125 68 3 24 147 64 179 7.43e-20 86.7
MS.gene57840.t1 AT2G18060 37.086 151 78 7 45 187 2 143 1.50e-19 84.0
MS.gene57840.t1 AT3G10490 44.000 100 41 3 40 135 2 90 1.98e-19 84.7
MS.gene57840.t1 AT3G10490 44.000 100 41 3 40 135 2 90 1.98e-19 84.7
MS.gene57840.t1 AT4G01540 42.857 98 53 2 22 118 63 158 2.29e-19 85.1
MS.gene57840.t1 AT4G01540 42.857 98 53 2 22 118 63 158 2.52e-19 85.1
MS.gene57840.t1 AT3G44290 41.304 92 48 2 20 111 68 153 2.56e-19 82.4
MS.gene57840.t1 AT4G01540 42.857 98 53 2 22 118 63 158 2.66e-19 84.7
MS.gene57840.t1 AT4G01540 42.857 98 53 2 22 118 63 158 2.96e-19 84.7
MS.gene57840.t1 AT4G01520 41.837 98 54 2 22 118 63 158 4.38e-19 83.2
MS.gene57840.t1 AT3G44290 41.304 92 48 2 20 111 68 153 1.08e-18 82.4
MS.gene57840.t1 AT5G22380 40.196 102 54 3 17 113 62 161 1.26e-17 78.2
MS.gene57840.t1 AT1G32870 41.284 109 53 4 20 122 65 168 1.57e-17 80.1
MS.gene57840.t1 AT1G32870 41.284 109 53 4 20 122 101 204 1.63e-17 80.1
MS.gene57840.t1 AT1G32870 41.284 109 53 4 20 122 65 168 1.67e-17 80.1
MS.gene57840.t1 AT5G04395 47.368 76 39 1 20 94 94 169 2.91e-17 76.3
MS.gene57840.t1 AT2G43000 43.617 94 46 4 32 121 5 95 1.00e-16 75.1
MS.gene57840.t1 AT3G44350 40.196 102 55 3 17 114 61 160 1.93e-16 75.1
MS.gene57840.t1 AT1G02230 41.509 106 53 4 14 114 50 151 2.71e-16 76.3
MS.gene57840.t1 AT3G04420 41.111 90 49 2 25 114 65 150 2.91e-15 73.2
MS.gene57840.t1 AT3G04420 41.111 90 49 2 25 114 65 150 3.53e-15 72.4
MS.gene57840.t1 AT3G44350 43.373 83 45 2 17 99 61 141 2.92e-14 67.8
MS.gene57840.t1 AT1G02250 40.625 96 52 3 20 114 60 151 2.17e-13 67.8
MS.gene57840.t1 AT1G02220 41.573 89 45 4 25 113 65 146 2.61e-13 67.8
MS.gene57840.t1 AT5G22290 36.275 102 60 2 46 147 2 98 2.64e-13 66.6
MS.gene57840.t1 AT5G64530 34.862 109 42 3 21 112 57 153 7.09e-12 61.6
MS.gene57840.t1 AT3G55210 38.542 96 54 3 27 121 85 176 3.85e-11 60.8
MS.gene57840.t1 AT5G64530 41.892 74 31 2 21 94 57 118 8.50e-11 58.2

Find 37 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGATGCTCCCATCCTCTTT+TGG 0.241605 6.1:-68829603 MS.gene57840:CDS
TTGGTTCCCATTTGGATACT+TGG 0.294541 6.1:+68830162 None:intergenic
GGGCTACAAACTCTGGTTAC+TGG 0.347454 6.1:-68830132 MS.gene57840:CDS
CTGTTGGATTGGTTCCCATT+TGG 0.365074 6.1:+68830154 None:intergenic
CCAAAGTTGTTGCCACTGCT+TGG 0.398431 6.1:+68829771 None:intergenic
TTCATGTTCATTTGTGATTG+AGG 0.408967 6.1:+68829650 None:intergenic
TCAAAGACTCATGAAGTTGT+TGG 0.413398 6.1:-68830076 MS.gene57840:CDS
ATTCATGATCCAATCAGTTC+TGG 0.414917 6.1:+68830006 None:intergenic
CAAATGGGAACCAATCCAAC+AGG 0.433663 6.1:-68830153 MS.gene57840:CDS
AAAGAAGCCAAGTATCCAAA+TGG 0.440359 6.1:-68830169 MS.gene57840:CDS
AGTTTGTAGCCCTGTTGGAT+TGG 0.451662 6.1:+68830143 None:intergenic
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6.1:-68830121 MS.gene57840:CDS
TTACTGGAAAGCAACTGGTT+TGG 0.462280 6.1:-68830116 MS.gene57840:CDS
CCAAGCAGTGGCAACAACTT+TGG 0.462790 6.1:-68829771 MS.gene57840:CDS
TCCAACAGGGCTACAAACTC+TGG 0.476642 6.1:-68830139 MS.gene57840:CDS
CTCATAGTTCCAGAACTGAT+TGG 0.479030 6.1:-68830015 MS.gene57840:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 6.1:-68829969 MS.gene57840:intron
TTCAGCTTCAAGTTCAAAAG+TGG 0.491537 6.1:-68829727 MS.gene57840:CDS
ACCAGAGTTTGTAGCCCTGT+TGG 0.493653 6.1:+68830138 None:intergenic
TTCATTTGTGATTGAGGAGG+AGG 0.495223 6.1:+68829656 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.511570 6.1:+68829975 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 6.1:+68829594 None:intergenic
AGAAAGACTGACCAAGGGGT+TGG 0.520507 6.1:+68829958 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 6.1:+68829590 None:intergenic
AAGAAGCCAAGTATCCAAAT+GGG 0.544681 6.1:-68830168 MS.gene57840:CDS
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 6.1:+68829967 None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG 0.563013 6.1:+68829595 None:intergenic
ATATTTCTGAAGAGGAGAGC+TGG 0.573188 6.1:-68829822 MS.gene57840:CDS
TGTGTCGCATATTTCTGAAG+AGG 0.578122 6.1:-68829830 MS.gene57840:CDS
CAATCAGTTCTGGAACTATG+AGG 0.582807 6.1:+68830016 None:intergenic
ATGTTCATTTGTGATTGAGG+AGG 0.585375 6.1:+68829653 None:intergenic
AAAGGAGTGAAGCCAAGCAG+TGG 0.615889 6.1:-68829783 MS.gene57840:CDS
GGTGAATTGAGATTGCCACC+AGG 0.622269 6.1:-68830543 MS.gene57840:intron
TCAGTTCTGGAACTATGAGG+TGG 0.658933 6.1:+68830019 None:intergenic
TAGGTGATATGGAACAAGAG+AGG 0.664397 6.1:-68830207 MS.gene57840:CDS
CAGTGGCAACAACTTTGGTG+AGG 0.677310 6.1:-68829766 MS.gene57840:CDS
AAATGGGAACCAATCCAACA+GGG 0.692548 6.1:-68830152 MS.gene57840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAATATGAATGAATT+GGG - chr6.1:68830286-68830305 MS.gene57840:intron 10.0%
!! TATTATTAATATGAATGAAT+TGG - chr6.1:68830285-68830304 MS.gene57840:intron 10.0%
!! CTTTCTTTGAATATGTATTT+GGG - chr6.1:68830222-68830241 MS.gene57840:intron 20.0%
!! TCTTTCTTTGAATATGTATT+TGG - chr6.1:68830221-68830240 MS.gene57840:intron 20.0%
!!! ATTTGGGTTTTGTAATTTAA+AGG - chr6.1:68830238-68830257 MS.gene57840:intron 20.0%
! ATGAACGAAAAAGAAAAGAA+AGG + chr6.1:68829784-68829803 None:intergenic 25.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6.1:68829599-68829618 MS.gene57840:CDS 25.0%
TAGTAGAAGTTATCATGTTC+CGG + chr6.1:68829877-68829896 None:intergenic 30.0%
TGTTTAATACTTGAAGCGTA+AGG - chr6.1:68829676-68829695 MS.gene57840:CDS 30.0%
TTCATGTTCATTTGTGATTG+AGG + chr6.1:68830516-68830535 None:intergenic 30.0%
! GGTTTTGCAGAATGAAAATT+GGG - chr6.1:68830307-68830326 MS.gene57840:intron 30.0%
!! GGTTGTTTTCTATGATTTCT+TGG - chr6.1:68830457-68830476 MS.gene57840:intron 30.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6.1:68829945-68829964 MS.gene57840:intron 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6.1:68830117-68830136 MS.gene57840:CDS 30.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6.1:68829994-68830013 MS.gene57840:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6.1:68829995-68830014 MS.gene57840:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr6.1:68829726-68829745 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6.1:68830571-68830590 None:intergenic 35.0%
ACAACAAGTTCTTCATCAGT+TGG + chr6.1:68829659-68829678 None:intergenic 35.0%
ATGTTCATTTGTGATTGAGG+AGG + chr6.1:68830513-68830532 None:intergenic 35.0%
ATTCAAAGAAAGACTGACCA+AGG + chr6.1:68830214-68830233 None:intergenic 35.0%
ATTCATGATCCAATCAGTTC+TGG + chr6.1:68830160-68830179 None:intergenic 35.0%
CTTCATCAGTTGGATGAAAA+CGG + chr6.1:68829649-68829668 None:intergenic 35.0%
GAAAAGAAAGGTTACATACC+AGG + chr6.1:68829772-68829791 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6.1:68830572-68830591 None:intergenic 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6.1:68830087-68830106 MS.gene57840:CDS 35.0%
TTCAAAGAAAGACTGACCAA+GGG + chr6.1:68830213-68830232 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG - chr6.1:68830306-68830325 MS.gene57840:intron 35.0%
! TTCAGCTTCAAGTTCAAAAG+TGG - chr6.1:68830436-68830455 MS.gene57840:intron 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6.1:68829937-68829956 MS.gene57840:intron 35.0%
AAATGGGAACCAATCCAACA+GGG - chr6.1:68830011-68830030 MS.gene57840:CDS 40.0%
ATCTTTGCAAGTCTGATCCT+GGG - chr6.1:68829741-68829760 MS.gene57840:CDS 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6.1:68829907-68829926 MS.gene57840:intron 40.0%
CTCATAGTTCCAGAACTGAT+TGG - chr6.1:68830148-68830167 MS.gene57840:CDS 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr6.1:68829734-68829753 None:intergenic 40.0%
GGTGCTAAAAATGGAGTGAA+AGG - chr6.1:68830362-68830381 MS.gene57840:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr6.1:68829956-68829975 MS.gene57840:intron 40.0%
TCAAAGAAAGACTGACCAAG+GGG + chr6.1:68830212-68830231 None:intergenic 40.0%
TGAAGCACAGACACAAACAT+CGG - chr6.1:68829821-68829840 MS.gene57840:CDS 40.0%
TTACATACCAGGTAAATCCC+AGG + chr6.1:68829761-68829780 None:intergenic 40.0%
TTACTGGAAAGCAACTGGTT+TGG - chr6.1:68830047-68830066 MS.gene57840:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG + chr6.1:68830510-68830529 None:intergenic 40.0%
TTGGTTCCCATTTGGATACT+TGG + chr6.1:68830004-68830023 None:intergenic 40.0%
! ATATTTCTGAAGAGGAGAGC+TGG - chr6.1:68830341-68830360 MS.gene57840:intron 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr6.1:68829712-68829731 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6.1:68830333-68830352 MS.gene57840:intron 40.0%
!! CAATCAGTTCTGGAACTATG+AGG + chr6.1:68830150-68830169 None:intergenic 40.0%
ACACTGACACATTCAGACAC+CGG - chr6.1:68829855-68829874 MS.gene57840:intron 45.0%
AGTTTGTAGCCCTGTTGGAT+TGG + chr6.1:68830023-68830042 None:intergenic 45.0%
CAAATGGGAACCAATCCAAC+AGG - chr6.1:68830010-68830029 MS.gene57840:CDS 45.0%
CACAAACATCGGACACAACA+TGG - chr6.1:68829832-68829851 MS.gene57840:CDS 45.0%
GATCTTTGCAAGTCTGATCC+TGG - chr6.1:68829740-68829759 MS.gene57840:CDS 45.0%
GTTGGATGAAAACGGAAACC+TGG + chr6.1:68829641-68829660 None:intergenic 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6.1:68830042-68830061 MS.gene57840:CDS 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr6.1:68829719-68829738 None:intergenic 45.0%
! AGGAGAGCTGGTGCTAAAAA+TGG - chr6.1:68830353-68830372 MS.gene57840:intron 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr6.1:68829713-68829732 None:intergenic 45.0%
!! CTGTTGGATTGGTTCCCATT+TGG + chr6.1:68830012-68830031 None:intergenic 45.0%
!! TCAGTTCTGGAACTATGAGG+TGG + chr6.1:68830147-68830166 None:intergenic 45.0%
AAAGGAGTGAAGCCAAGCAG+TGG - chr6.1:68830380-68830399 MS.gene57840:intron 50.0%
ACCAGAGTTTGTAGCCCTGT+TGG + chr6.1:68830028-68830047 None:intergenic 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr6.1:68830208-68830227 None:intergenic 50.0%
CAGTGGCAACAACTTTGGTG+AGG - chr6.1:68830397-68830416 MS.gene57840:intron 50.0%
CCAAAGTTGTTGCCACTGCT+TGG + chr6.1:68830395-68830414 None:intergenic 50.0%
CCAAGCAGTGGCAACAACTT+TGG - chr6.1:68830392-68830411 MS.gene57840:intron 50.0%
GGATGAAAACGGAAACCTGG+TGG + chr6.1:68829638-68829657 None:intergenic 50.0%
GGGCTACAAACTCTGGTTAC+TGG - chr6.1:68830031-68830050 MS.gene57840:CDS 50.0%
GGTGAATTGAGATTGCCACC+AGG - chr6.1:68829620-68829639 MS.gene57840:CDS 50.0%
GTCTGATCCTGGGATTTACC+TGG - chr6.1:68829751-68829770 MS.gene57840:CDS 50.0%
TCCAACAGGGCTACAAACTC+TGG - chr6.1:68830024-68830043 MS.gene57840:CDS 50.0%
! ACGATGCTCCCATCCTCTTT+TGG - chr6.1:68830560-68830579 MS.gene57840:CDS 50.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6.1:68830191-68830210 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6.1:68830194-68830213 MS.gene57840:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6.1:68830199-68830218 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 68829593 68830592 68829593 ID=MS.gene57840
chr6.1 mRNA 68829593 68830592 68829593 ID=MS.gene57840.t1;Parent=MS.gene57840
chr6.1 exon 68830544 68830592 68830544 ID=MS.gene57840.t1.exon1;Parent=MS.gene57840.t1
chr6.1 CDS 68830544 68830592 68830544 ID=cds.MS.gene57840.t1;Parent=MS.gene57840.t1
chr6.1 exon 68829970 68830226 68829970 ID=MS.gene57840.t1.exon2;Parent=MS.gene57840.t1
chr6.1 CDS 68829970 68830226 68829970 ID=cds.MS.gene57840.t1;Parent=MS.gene57840.t1
chr6.1 exon 68829593 68829868 68829593 ID=MS.gene57840.t1.exon3;Parent=MS.gene57840.t1
chr6.1 CDS 68829593 68829868 68829593 ID=cds.MS.gene57840.t1;Parent=MS.gene57840.t1
Gene Sequence

>MS.gene57840

ATGGAGAAGATGAATTTTGTGAAGAATGGTGAATTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACTGATGAAGAACTTGTTGTTTAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTGGGATTTACCTGGTATGTAACCTTTCTTTTCTTTTTCGTTCATTTATAATCATAGCTTAATGAAGCACAGACACAAACATCGGACACAACATGGACACTGACACATTCAGACACCGGAACATGATAACTTCTACTATCACGTACTACTACTGCAAACAATGTCATGTGGATTGATTTGAGTGTGTGTTGTTCTTTTAGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACAAAAGAAGCCAAGTATCCAAATGGGAACCAATCCAACAGGGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATAGTTCCAGAACTGATTGGATCATGAATGAATATCACCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTCTTTCTTTGAATATGTATTTGGGTTTTGTAATTTAAAGGTGTTGTCATTAGTGTGACTTGAATTATTATTAATATGAATGAATTGGGTTTTGCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGCTGGTGCTAAAAATGGAGTGAAAGGAGTGAAGCCAAGCAGTGGCAACAACTTTGGTGAGGTGAAGAAGAACTCAGCTTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTGGCAGTGAAGAAGAACAATTCTGATGCATCCTCCTCCTCAATCACAAATGAACATGAAAATGAAGACAGCAGTAACTCATTCACGATGCTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene57840.t1

MEKMNFVKNGELRLPPGDMEQERYFFSTKEAKYPNGNQSNRATNSGYWKATGLDKQIMNSKTHEVVGMKKTLVFYRGKPPHSSRTDWIMNEYHLTSSHSNPLNENWVLCRIFLKRRAGAKNGVKGVKPSSGNNFGEVKKNSASASSSKVVVFYDFLAVKKNNSDASSSSITNEHENEDSSNSFTMLPSSFGNA