AlfalfaGEDB | MS.gene57861

M. sativa cultivar XinJiangDaYe / MS.gene57861

KEGG: K09838
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57861.t1	XP_013453497.1	88	133	15	1	1	133	188	319	1.20E-60	243.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57861.t1	Q9FGC7	64.3	157	50	2	1	152	193	348	4.2e-51	203.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57861.t1	A0A072UD31	88.0	133	15	1	1	133	188	319	8.4e-61	243.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene57861.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57861.t1	MTR_5g017350	87.970	133	15	1	1	133	188	319	5.92e-80	249
MS.gene57861.t1	MTR_5g017350	87.970	133	15	1	1	133	188	319	4.42e-79	249
MS.gene57861.t1	MTR_5g017350	87.970	133	15	1	1	133	188	319	2.64e-78	249
MS.gene57861.t1	MTR_5g017350	87.970	133	15	1	1	133	188	319	5.21e-78	249
MS.gene57861.t1	MTR_4g022850	63.115	122	44	1	1	122	167	287	2.12e-49	169
MS.gene57861.t1	MTR_4g022850	63.115	122	44	1	1	122	167	287	2.98e-49	169
MS.gene57861.t1	MTR_4g022850	63.115	122	44	1	1	122	167	287	2.99e-49	169
MS.gene57861.t1	MTR_3g087940	72.059	68	16	1	131	198	55	119	9.14e-23	96.3
MS.gene57861.t1	MTR_5g017370	59.016	61	25	0	65	125	12	72	1.85e-16	72.4
MS.gene57861.t1	MTR_8g091650	57.746	71	26	2	129	198	48	115	6.13e-15	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57861.t1	AT5G67030	61.628	172	54	3	1	167	193	357	6.78e-63	207
MS.gene57861.t1	AT5G67030	61.628	172	54	3	1	167	193	357	1.39e-62	208
MS.gene57861.t1	AT5G65210	61.111	72	23	2	129	198	56	124	1.07e-16	79.3
MS.gene57861.t1	AT5G65210	61.111	72	23	2	129	198	56	124	1.07e-16	79.3
MS.gene57861.t1	AT5G65210	61.111	72	23	2	129	198	56	124	1.07e-16	79.3
MS.gene57861.t1	AT5G65210	61.111	72	23	2	129	198	56	124	1.07e-16	79.3
MS.gene57861.t1	AT5G65210	61.111	72	23	2	129	198	56	124	1.07e-16	79.3
MS.gene57861.t1	AT5G65210	61.111	72	23	2	129	198	56	124	1.07e-16	79.3
MS.gene57861.t1	AT5G10030	61.429	70	22	2	131	198	54	120	9.62e-16	76.3
MS.gene57861.t1	AT5G10030	61.429	70	22	2	131	198	54	120	9.62e-16	76.3

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Find 59 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGTTCACTCTAACAGCAA+AGG	0.575318	5.2:-68378418	MS.gene57861:CDS
ACAGGACAAACTTTGCTCTT+AGG	0.236085	5.2:+68379490	None:intergenic
AGAGGAGAGCAACTCTAATT+TGG	0.306680	5.2:-68379530	MS.gene57861:CDS
AGATTCTTGCCCGTGCAGTC+TGG	0.364988	5.2:-68381232	MS.gene57861:CDS
AGCAGATGGGATTTGGTCAA+AGG	0.542351	5.2:-68380995	MS.gene57861:intron
AGCTAATAAACCTATTGATA+AGG	0.470778	5.2:-68380052	MS.gene57861:intron
AGGACAAACTTTGCTCTTAG+GGG	0.667666	5.2:+68379492	None:intergenic
AGGTGCGGACAAAGTTATTT+GGG	0.289347	5.2:-68380488	MS.gene57861:CDS
AGTACCTTTGTGCAGGATTA+TGG	0.243323	5.2:-68379554	MS.gene57861:intron
AGTTAGTGCAGTTGGACAGC+AGG	0.487464	5.2:-68379732	MS.gene57861:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACAAAATGTTGTATCAG+AGG	-	chr5.2:68378902-68378921	MS.gene57861:intron	30.0%
AATATGCAGATTGATGTATG+AGG	-	chr5.2:68380362-68380381	MS.gene57861:intron	30.0%
AATTATTCTGTGAATAGGTG+CGG	-	chr5.2:68379102-68379121	MS.gene57861:intron	30.0%
ACATCCAAAATTTGAAAGCA+TGG	+	chr5.2:68379629-68379648	None:intergenic	30.0%
AGGGATTAAAGTTAGAGAAA+TGG	+	chr5.2:68379232-68379251	None:intergenic	30.0%
ATAATACTTCACATCTTCAG+AGG	+	chr5.2:68379492-68379511	None:intergenic	30.0%
ATATCATTTGTAGGTAACAG+TGG	-	chr5.2:68378541-68378560	MS.gene57861:intron	30.0%
ATTTAGGGAAGCTTCAATAA+AGG	+	chr5.2:68378736-68378755	None:intergenic	30.0%
CATGTTCTTACCTTATCAAT+AGG	+	chr5.2:68379566-68379585	None:intergenic	30.0%
GATTGAATATGCAGATACAA+AGG	-	chr5.2:68379672-68379691	MS.gene57861:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	68378360	68381267	68378360	ID=MS.gene57861
chr5.2	mRNA	68378360	68381267	68378360	ID=MS.gene57861.t1;Parent=MS.gene57861
chr5.2	exon	68381175	68381267	68381175	ID=MS.gene57861.t1.exon1;Parent=MS.gene57861.t1
chr5.2	CDS	68381175	68381267	68381175	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1
chr5.2	exon	68380996	68381073	68380996	ID=MS.gene57861.t1.exon2;Parent=MS.gene57861.t1
chr5.2	CDS	68380996	68381073	68380996	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1
chr5.2	exon	68380408	68380508	68380408	ID=MS.gene57861.t1.exon3;Parent=MS.gene57861.t1
chr5.2	CDS	68380408	68380508	68380408	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1
chr5.2	exon	68380187	68380302	68380187	ID=MS.gene57861.t1.exon4;Parent=MS.gene57861.t1
chr5.2	CDS	68380187	68380302	68380187	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1
chr5.2	exon	68380053	68380138	68380053	ID=MS.gene57861.t1.exon5;Parent=MS.gene57861.t1
chr5.2	CDS	68380053	68380138	68380053	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1
chr5.2	exon	68379882	68379941	68379882	ID=MS.gene57861.t1.exon6;Parent=MS.gene57861.t1
chr5.2	CDS	68379882	68379941	68379882	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1
chr5.2	exon	68379733	68379788	68379733	ID=MS.gene57861.t1.exon7;Parent=MS.gene57861.t1
chr5.2	CDS	68379733	68379788	68379733	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1
chr5.2	exon	68379492	68379561	68379492	ID=MS.gene57861.t1.exon8;Parent=MS.gene57861.t1
chr5.2	CDS	68379492	68379561	68379492	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1
chr5.2	exon	68378360	68378494	68378360	ID=MS.gene57861.t1.exon9;Parent=MS.gene57861.t1
chr5.2	CDS	68378360	68378494	68378360	ID=cds.MS.gene57861.t1;Parent=MS.gene57861.t1

Gene Sequence

>MS.gene57861

ATGGCTTTCCAAGAGATTCTTGCCCGTGCAGTCTGGGATGATGTCATTATGAATGGTAGTAAAGTTGTCGATTTCGTTGATCATGAAACTAAGGTAATCAAAGAAAGCTTTTATTGAAGATTCTCCTTACATTGCTAATAATTAACATAGGTATTTTTGAAGCTTTTAAACAATATTTGGTATATCATTTGTAGGTAACAGTGGTGTTGGATAATGGTCAGAAGTATGATGGAGATCTCTTGGTTGGAGGAGCAGATGGGATTTGGTCAAAGGTCTTCTTAAATTCTTTCTTTTATTCATAATTTTCTATATAGTAACTTAGGGGAAGAGTTTGAAGGAAATTTTAAAATACTCTCCCAAACCTTGCTTTACTCCTTTATTGAAGCTTCCCTAAATTGTAAGGTTTTGGACATTAAAACAAGGTGGGAGCTTATCATCCTTTTCTCCTCCCTCCCCCCACCCTCCTGTACAAAGTTGCGCATTCCCTTTCTCTCTAGGCTCCCTAAAAAATCTCAAGTAATTGTATACTCAGCATAATCAATAACACAAAATGTTGTATCAGAGGAATTAACAAAACTGTTTATGGTATAGATATCTTCTAGAAAAGTTAGTCTTTTATACTTGAAAACACATAATGTATACCCAGCATAATCAATAGCACATGTGTATGTAAATTTATTTTTCAGCTTTATTCCTCCAATTACAGGTCATTTTCTAATTTAATGTCTTCATTATATCATTGAATTATTCTGTGAATAGGTGCGGACAAAGTTATTTGGGGCAACAAAAGCTACATATTCGGGCTATACCTGTTACACTGGTTTATCAGACTTTGTGCGACCTGACATTGAATCGGTTGGGTGAGTTGGCCATTTCTCTAACTTTAATCCCTATTTAACTATACTTCCTGGCCATCATTTTATCATGTCATGTTGAGAAGCTGACTTGAACTTCTTTGGTTGAAGGTACCGATTATTCTTAGGACTCAAACAATACTTTGTATCTTCAGACGTCGGTGCTGGAAAGATGCAATGGTATGCATTTCACCAGGAACCTGCAGGAGGTGTTGATACCCCCAATGGTTTGTGCTTCTAAACTAAATGTATGTGTAACATCTGTCAGAGAATAGCCTCTGAAGATGTGAAGTATTATTGGCACTCCATTATAAAATCAAGACACAAGTCTGAGCAAGAAGCTAATAAACCTATTGATAAGGTAAGAACATGAAAAATCTGTATTAAGTGCACATTAAGTCATTTACTGATACCATGCTTTCAAATTTTGGATGTTGTACATTAAGTCATTCTGATATGATTGAATATGCAGATACAAAGGCGTCTCGCACATAATCGAGAAGCTGCACGTAAGAGCCGTCTGCGAAAAAAGGTTTTAATGTTGTTTACAAATTGATGAATATGTCAGACGAGTAATTATTAGTGTCAATGTACTGATCAAGTCATTTCTGACATTGCCTTACAGGCTTATGTGCAGCAGCTAGAATCGAGTCGTTTGAAGTTAGTGCAGTTGGACAGCAGGTGTGGGGAAGATGAGTTATTATTTTACTAAACACGACACTGTGATTTTGACACAATTTGGAACTTCAGTGAAATGATAGTGTCACATTGATTTTACTAAACTCGATGTCAATTTAAACATGCATTAAAATTGGAATTATATGAGATTCTAATTAGAGTACCTTTGTGCAGGATTATGGAAGAGGAGAGCAACTCTAATTTGGCGAATCAAAGCACTACCCCTAAGAGCAAAGTTTGTCCTGTATGCCGGAAACTTATTCATAGAGTAAAAAGATTATTCTAGAGTAAAAAGATTATTCAACAGTTAGGTTCATACTGCTGTATAATATAGAAATTTTAGAGGTCTCTAAAACTGCACGGTAATTGCGATTTTAGCTGTATTGGATGTATTTTGCCGTGATAAATTGTCCGCAATGTCACTAGGCCGTAATCACAATTCAGAACTATGGTTACTGAATATGCTCACAAATATGCAGATTGATGTATGAGGTTTACATATAGTCAATAATTAGATTATGATTATGACATTGAGTTCATTTTATTTATGGCAGCAAGCAATATATGTCAATATTTTGTCACCTCTAAACTTGAAAGACTAGTCTTAGAAAATTGTCTTCTACTTTTGACAGTACAATTAGCACTTTGTTTTAGAATTTGTTGATCCTGCTTATTTTTTCATTTTGATACTTGATATCTTGGTAATCACCCTGTTTCTGCATTTTTGGCTGCAAATTTTGCAATTCTAATTTGACAAATTATGTTGTTTCCAACAAAGCCTAACCTTCCTCTAACAATATGGATGTAATTCAAATTTTGCAATTCTAATTTTGCAATATGGATGTACATGTTTGACACAATAGTTCATTTACAGTTAAGTTAAAATGTCATTTGAGTGGGGAATCATGCTTCTGAGAGATTAAAGTGTGATATATCACCATTCAAATTCCTTTTTCTCATGTGTTTCTCTCTCTTGATGAATGGCGATAGACCACACACTTTACCCTCTCATGTGTAAATAACACATGAGAGAATTCATTCCCAATTTAGTCATGCATTTTATAGTCATGAGCATATTCCTAAGCCACTTTGTGTACACTTAGCCATATAAATACTTTTTAATAACCAATATCAATCTGATTGTTAATCACATCCTATCTTGCAGGTTTATTGGTTTATAGGCATATTATTCAATGTATATGCCTATAAATATGGCTTCAATGACATGATTTTGCTTTAAGAATATCAGCAGCAGGATCGACAAGTTTTCGACATTTGTGATTTTGAAGAAAAGGAATGTTCACTCTAACAGCAAAGGGATGTCATACATGCAAGTGTTGTCATTTGGAGCTGTTGTCATTTGGAGCAGCATTTGA

Protein sequence

>MS.gene57861.t1

MAFQEILARAVWDDVIMNGSKVVDFVDHETKVTVVLDNGQKYDGDLLVGGADGIWSKVRTKLFGATKATYSGYTCYTGLSDFVRPDIESVGYRLFLGLKQYFVSSDVGAGKMQWYAFHQEPAGGVDTPNASEDVKYYWHSIIKSRHKSEQEANKPIDKIQRRLAHNREAARKSRLRKKAYVQQLESSRLKLVQLDSRIMEEESNSNLANQSTTPKSKVCPNISSRIDKFSTFVILKKRNVHSNSKGMSYMQVLSFGAVVIWSSI