AlfalfaGEDB | MS.gene57863

M. sativa cultivar XinJiangDaYe / MS.gene57863

KEGG: K13945
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57863.t1	XP_003616452.1	95.9	193	6	2	1	192	1	192	2.30E-98	368.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57863.t1	Q9LHS8	52.1	188	74	3	1	188	1	172	3.1e-43	176.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57863.t1	G7KGT3	95.9	193	6	2	1	192	1	192	1.7e-98	368.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene57863.t1	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57863.t1	MTR_5g080470	95.855	193	6	2	1	192	1	192	1.84e-135	377
MS.gene57863.t1	MTR_7g096610	55.405	148	61	2	1	147	2	145	2.48e-52	167
MS.gene57863.t1	MTR_1g070205	68.627	102	32	0	8	109	13	114	9.25e-49	159
MS.gene57863.t1	MTR_7g096530	65.000	100	35	0	2	101	9	108	4.75e-46	151
MS.gene57863.t1	MTR_1g070220	49.655	145	59	2	5	149	13	143	4.41e-44	145
MS.gene57863.t1	MTR_8g036105	59.434	106	43	0	5	110	16	121	8.79e-44	145
MS.gene57863.t1	MTR_8g036085	62.264	106	40	0	8	113	24	129	8.81e-44	145
MS.gene57863.t1	MTR_6g027710	42.932	191	79	5	6	170	39	225	1.03e-43	145
MS.gene57863.t1	MTR_7g074990	63.636	99	36	0	8	106	21	119	6.59e-41	139
MS.gene57863.t1	MTR_7g075230	62.626	99	35	2	5	101	10	108	7.53e-40	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene57863.t1	AT5G06080	52.406	187	73	3	1	187	1	171	1.40e-59	184
MS.gene57863.t1	AT3G58190	68.868	106	33	0	8	113	12	117	1.21e-50	163
MS.gene57863.t1	AT2G42440	60.656	122	43	1	1	117	1	122	1.25e-49	161
MS.gene57863.t1	AT2G42430	60.526	114	45	0	3	116	11	124	4.76e-47	154
MS.gene57863.t1	AT3G03760	61.607	112	43	0	6	117	50	161	6.91e-47	155
MS.gene57863.t1	AT4G00210	64.000	100	36	0	2	101	6	105	3.17e-46	152
MS.gene57863.t1	AT2G31310	48.344	151	77	1	1	150	1	151	3.53e-45	148
MS.gene57863.t1	AT2G45420	65.347	101	35	0	10	110	40	140	9.62e-44	147
MS.gene57863.t1	AT4G00220	61.386	101	39	0	10	110	20	120	1.62e-41	140
MS.gene57863.t1	AT2G45410	60.870	92	36	0	10	101	19	110	8.38e-39	132

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Find 39 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTACCATAATCAAAGTTT+TGG	0.265734	5.2:+68314679	MS.gene57863:CDS
ACAGGGTTTGGCTCATCATG+TGG	0.589293	5.2:+68313635	MS.gene57863:CDS
ACATTAGAGAAGTTCTTATC+AGG	0.342216	5.2:+68314778	MS.gene57863:CDS
AGATATTCTTGGAAGTGTAA+TGG	0.550072	5.2:+68314582	MS.gene57863:CDS
AGGATCTTGCATGCGAGCCA+AGG	0.545581	5.2:-68313846	None:intergenic
AGGGCTTCTTGAACCACCCT+TGG	0.469455	5.2:+68314812	MS.gene57863:CDS
AGTGTTAGTGTTGTGAATTG+TGG	0.611640	5.2:+68314613	MS.gene57863:CDS
ATAAAACTTTGGAAAATGAC+AGG	0.453003	5.2:+68313617	None:intergenic
ATGAGCTGAAGCCTGTTCAT+AGG	0.437523	5.2:-68313717	None:intergenic
ATGATCCAAAACTTTGATTA+TGG	0.255926	5.2:-68314684	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGATGCTAGAAATATAG+CGG	-	chr5.2:68314264-68314283	None:intergenic	30.0%
ACATTAGAGAAGTTCTTATC+AGG	+	chr5.2:68314778-68314797	MS.gene57863:CDS	30.0%
ATTCAATGCATGTGTAAGTA+AGG	-	chr5.2:68314367-68314386	None:intergenic	30.0%
ATTTAAAAACCTTGGTTGTG+AGG	-	chr5.2:68314109-68314128	None:intergenic	30.0%
CTCTCCACAAAAAATTTCTT+AGG	+	chr5.2:68314444-68314463	MS.gene57863:intron	30.0%
CTTCTCTAATGTATTTGAGT+TGG	-	chr5.2:68314770-68314789	None:intergenic	30.0%
CTTTATATTGCACCAAAATG+CGG	+	chr5.2:68313973-68313992	MS.gene57863:intron	30.0%
GTTCGACAATTTAAAAACCT+TGG	-	chr5.2:68314117-68314136	None:intergenic	30.0%
TTATCAGGAATTGATCAAGA+GGG	+	chr5.2:68314793-68314812	MS.gene57863:CDS	30.0%
TTTCTTATGTGTGATTATGC+AGG	+	chr5.2:68314537-68314556	MS.gene57863:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	68313632	68314864	68313632	ID=MS.gene57863
chr5.2	mRNA	68313632	68314864	68313632	ID=MS.gene57863.t1;Parent=MS.gene57863
chr5.2	exon	68313632	68313910	68313632	ID=MS.gene57863.t1.exon1;Parent=MS.gene57863.t1
chr5.2	CDS	68313632	68313910	68313632	ID=cds.MS.gene57863.t1;Parent=MS.gene57863.t1
chr5.2	exon	68314559	68314864	68314559	ID=MS.gene57863.t1.exon2;Parent=MS.gene57863.t1
chr5.2	CDS	68314559	68314864	68314559	ID=cds.MS.gene57863.t1;Parent=MS.gene57863.t1

Gene Sequence

>MS.gene57863

ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGTGCTAGTGATTGTGTTTTTGCTCCATACTTCTCCTATGAACAGGCTTCAGCTCATTTTTCAGCAGTGCATAAGGTTTATGGAGCTAGTAATGTCTCTAGACTATTGTCACATCTTCCTATTCAAAATAGAAGTGATGCTGCCATCACTATATCTTATGAAGCCTTGGCTCGCATGCAAGATCCTATTTATGGTTGTGTTGCTCATATCTATGCATTGCAACATCAGGTTAATTTCTATGTTGTGATATGACTATGATTTTAAATTGCAATTGCAGTTACGTTGTGAATCTTTATATTGCACCAAAATGCGGTAAAATATGGCGCATGCGGTCGAAATTGCGATTGTAATGTCGTTGTGGATGTTAGTTAGATTGTTGCCACAGTTGCAGTTGCGGACCACAATTTAAAACAATGGTTGTGACCTCACAACCAAGGTTTTTAAATTGTCGAACAATCATGGATATTGTGGTCATATGCAGATAATGTGACCTTGGTGCATATTTGGATGAGCCACCGTAATTTTATGAAACTATTAAGTGTATTTTTTGTCAAAATCATGATGGCTTGTTATTCTCACCGCTATATTTCTAGCATCCATTGCTTATATATTGATGCATTTTTTGAGCAAATATTTCTAGTGTACGATTTTACCTCCATTACTCCAACTTTCTGGATCCATCCTTACTTACACATGCATTGAATAAAATTAAAACTCTAAAATTGTGCTTGTTATAAATAAGAAGTTGGATCTTACAAAGTCTCTCCACAAAAAATTTCTTAGGCCTAAAAAATTTTCTACACGGCCATGACCTACACATAATTGTGGGGGTGTAATGGTAAGAAGAGATAGATTTTCTTATGTGTGATTATGCAGGTTGCTAGCTTGCAAGAGGAGATAGATATTCTTGGAAGTGTAATGGCAAATTCAAGTGTTAGTGTTGTGAATTGTGGCAATGTTGATCAAGCACCAATGAACTCAAATAATGGAACACAAAATTACCATAATCAAAGTTTTGGATCATACTTGGATATGGAGCTAATTCCTAATGCACAAGGATTTCCAGAGCCTTTATATGGTGATTCCAACTCAAATACATTAGAGAAGTTCTTATCAGGAATTGATCAAGAGGGCTTCTTGAACCACCCTTGGTTCAAGCATAATGGAGACATGAAGAACTAG

Protein sequence

>MS.gene57863.t1

MTGFGSSCGACKFLRRKCASDCVFAPYFSYEQASAHFSAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDILGSVMANSSVSVVNCGNVDQAPMNSNNGTQNYHNQSFGSYLDMELIPNAQGFPEPLYGDSNSNTLEKFLSGIDQEGFLNHPWFKHNGDMKN