AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58102

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58102.t1 MTR_8g093040 71.429 308 46 6 1 300 1 274 2.56e-135 385
MS.gene58102.t1 MTR_6g045327 53.674 313 117 5 1 303 1 295 6.42e-102 305
MS.gene58102.t1 MTR_4g021760 48.476 328 136 8 1 313 1 310 6.73e-92 276
MS.gene58102.t1 MTR_4g021855 50.996 251 100 5 1 240 1 239 3.49e-74 231
MS.gene58102.t1 MTR_4g021790 44.983 289 127 6 1 278 1 268 1.40e-70 221
MS.gene58102.t1 MTR_4g021845 50.901 222 93 4 1 211 1 217 2.99e-69 215
MS.gene58102.t1 MTR_1g032570 37.467 379 161 9 12 320 9 381 4.86e-68 224
MS.gene58102.t1 MTR_8g105600 37.216 352 163 10 14 324 9 343 5.27e-54 186
MS.gene58102.t1 MTR_2g034960 42.083 240 105 2 13 218 28 267 4.24e-51 178
MS.gene58102.t1 MTR_5g055260 45.494 233 86 7 1 223 1 202 1.33e-49 166
MS.gene58102.t1 MTR_8g079940 38.462 260 121 3 14 237 25 281 5.60e-49 171
MS.gene58102.t1 MTR_4g121020 40.083 242 109 2 13 218 30 271 1.94e-48 172
MS.gene58102.t1 MTR_4g121020 40.083 242 109 2 13 218 30 271 2.04e-48 172
MS.gene58102.t1 MTR_3g086100 37.500 272 130 4 14 247 13 282 6.64e-48 169
MS.gene58102.t1 MTR_1g032570 34.906 318 131 10 73 320 1 312 3.36e-44 159
MS.gene58102.t1 MTR_4g131600 35.968 253 129 2 4 223 10 262 2.19e-42 154
MS.gene58102.t1 MTR_6g016850 47.134 157 70 4 9 153 4 159 1.13e-41 143
MS.gene58102.t1 MTR_4g023980 50.735 136 56 2 61 185 36 171 9.59e-41 140
MS.gene58102.t1 MTR_4g131580 33.840 263 132 3 14 234 17 279 1.94e-40 149
MS.gene58102.t1 MTR_3g102600 36.574 216 113 1 13 228 7 198 5.24e-40 140
MS.gene58102.t1 MTR_4g131570 35.458 251 124 3 14 226 17 267 2.03e-39 146
MS.gene58102.t1 MTR_3g106220 35.081 248 119 3 13 218 7 254 2.67e-38 144
MS.gene58102.t1 MTR_3g102600 37.186 199 101 1 13 211 7 181 3.48e-38 134
MS.gene58102.t1 MTR_1g013170 34.836 244 121 2 13 218 4 247 3.39e-37 139
MS.gene58102.t1 MTR_2g450070 31.559 263 133 3 6 221 10 272 2.32e-36 138
MS.gene58102.t1 MTR_2g450070 31.559 263 133 3 6 221 10 272 2.61e-36 138
MS.gene58102.t1 MTR_7g117705 33.469 245 125 3 13 219 4 248 1.40e-34 131
MS.gene58102.t1 MTR_3g102590 36.139 202 114 3 13 213 7 194 5.95e-33 121
MS.gene58102.t1 MTR_1g013180 32.422 256 135 2 1 218 143 398 6.55e-33 129
MS.gene58102.t1 MTR_3g102590 36.318 201 113 3 13 212 7 193 8.11e-33 122
MS.gene58102.t1 MTR_3g102600 36.416 173 86 1 56 228 1 149 1.41e-32 119
MS.gene58102.t1 MTR_3g086100 35.681 213 97 4 73 247 1 211 1.81e-32 126
MS.gene58102.t1 MTR_3g102600 37.179 156 74 1 56 211 1 132 6.64e-31 114
MS.gene58102.t1 MTR_7g026400 33.500 200 105 3 44 218 17 213 7.80e-31 122
MS.gene58102.t1 MTR_0450s0040 30.364 247 152 6 17 246 7 250 1.94e-29 115
MS.gene58102.t1 MTR_4g121020 39.506 162 61 3 93 218 7 167 6.47e-25 105
MS.gene58102.t1 MTR_8g032710 26.299 308 157 8 18 268 21 315 5.00e-21 93.6
MS.gene58102.t1 MTR_1g067110 31.707 123 79 2 18 136 85 206 3.30e-14 73.9
MS.gene58102.t1 MTR_1g067110 31.707 123 79 2 18 136 85 206 3.49e-14 73.6
MS.gene58102.t1 MTR_4g061360 34.146 123 76 2 18 136 89 210 1.43e-13 72.0
MS.gene58102.t1 MTR_8g024260 31.452 124 82 1 16 136 34 157 1.61e-13 71.6
MS.gene58102.t1 MTR_7g118260 30.000 130 88 1 15 141 11 140 2.49e-13 70.9
MS.gene58102.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.20e-13 70.9
MS.gene58102.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.50e-13 70.5
MS.gene58102.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.70e-13 70.5
MS.gene58102.t1 MTR_3g092780 30.328 122 82 1 18 136 56 177 3.73e-13 70.5
MS.gene58102.t1 MTR_7g118260 30.400 125 84 1 15 136 11 135 3.96e-13 70.5
MS.gene58102.t1 MTR_4g064730 55.172 58 26 0 161 218 130 187 9.89e-13 68.2
MS.gene58102.t1 MTR_5g014040 29.197 137 90 4 5 139 6 137 1.34e-11 65.9
MS.gene58102.t1 MTR_5g041350 48.571 70 34 2 162 230 15 83 1.37e-11 65.1
MS.gene58102.t1 MTR_5g014040 29.197 137 90 4 5 139 6 137 1.37e-11 65.5
MS.gene58102.t1 MTR_7g089010 51.724 58 28 0 161 218 90 147 1.85e-11 64.3
MS.gene58102.t1 MTR_4g098870 51.923 52 25 0 161 212 309 360 8.19e-11 63.2
MS.gene58102.t1 MTR_4g098870 51.923 52 25 0 161 212 329 380 8.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58102.t1 AT2G01760 37.548 261 118 2 13 228 6 266 5.65e-50 171
MS.gene58102.t1 AT2G01760 33.910 289 118 3 13 228 6 294 3.11e-44 156
MS.gene58102.t1 AT3G16857 34.831 267 118 2 8 218 27 293 2.88e-42 155
MS.gene58102.t1 AT3G16857 34.831 267 118 2 8 218 27 293 2.99e-42 155
MS.gene58102.t1 AT1G67710 38.095 252 117 5 15 227 8 259 2.61e-41 150
MS.gene58102.t1 AT2G25180 36.508 252 125 4 1 218 1 251 4.04e-40 148
MS.gene58102.t1 AT4G31920 37.860 243 122 5 1 218 1 239 3.40e-38 142
MS.gene58102.t1 AT2G01760 35.323 201 85 2 73 228 1 201 2.02e-32 123
MS.gene58102.t1 AT3G16857 33.632 223 92 2 52 218 1 223 2.73e-32 127
MS.gene58102.t1 AT5G58080 30.962 239 131 3 13 218 13 250 2.27e-30 121
MS.gene58102.t1 AT1G49190 29.688 256 137 5 5 218 21 275 7.98e-29 115
MS.gene58102.t1 AT1G67710 37.113 194 83 5 73 227 1 194 1.40e-27 112
MS.gene58102.t1 AT3G62670 31.381 239 125 6 19 224 42 274 9.27e-27 109
MS.gene58102.t1 AT5G49240 28.125 256 135 3 3 215 27 276 6.33e-26 105
MS.gene58102.t1 AT1G49190 35.878 131 84 0 6 136 22 152 9.08e-21 93.6
MS.gene58102.t1 AT1G67710 35.632 174 73 5 93 227 12 185 8.46e-19 87.0
MS.gene58102.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.49e-16 80.1
MS.gene58102.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.63e-16 79.7
MS.gene58102.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.63e-16 79.7
MS.gene58102.t1 AT5G60100 33.607 122 78 1 18 136 64 185 2.63e-16 79.7
MS.gene58102.t1 AT5G60100 33.607 122 78 1 18 136 64 185 3.06e-16 79.3
MS.gene58102.t1 AT5G60100 33.607 122 78 1 18 136 64 185 3.06e-16 79.3
MS.gene58102.t1 AT5G60100 33.607 122 78 1 18 136 64 185 3.06e-16 79.3
MS.gene58102.t1 AT2G46790 32.520 123 80 1 18 137 37 159 4.31e-15 76.3
MS.gene58102.t1 AT2G46790 32.520 123 80 1 18 137 37 159 5.16e-15 75.9
MS.gene58102.t1 AT5G24470 31.148 122 81 1 18 136 50 171 2.90e-14 73.9
MS.gene58102.t1 AT5G59570 54.237 59 27 0 160 218 139 197 1.61e-13 70.5
MS.gene58102.t1 AT5G59570 54.237 59 27 0 160 218 139 197 1.61e-13 70.5
MS.gene58102.t1 AT3G46640 55.172 58 26 0 161 218 143 200 4.11e-13 69.3
MS.gene58102.t1 AT3G46640 55.172 58 26 0 161 218 143 200 4.11e-13 69.3
MS.gene58102.t1 AT3G46640 55.172 58 26 0 161 218 143 200 4.50e-13 69.3
MS.gene58102.t1 AT5G02810 31.148 122 81 1 18 136 78 199 5.11e-12 67.0
MS.gene58102.t1 AT5G07210 39.423 104 61 2 132 234 199 301 5.32e-12 67.0
MS.gene58102.t1 AT5G07210 39.423 104 61 2 132 234 191 293 5.84e-12 67.0
MS.gene58102.t1 AT5G44190 53.704 54 25 0 159 212 144 197 7.38e-12 66.2
MS.gene58102.t1 AT5G44190 53.704 54 25 0 159 212 144 197 7.76e-12 65.9
MS.gene58102.t1 AT2G40970 50.000 58 29 0 161 218 104 161 8.09e-12 64.7
MS.gene58102.t1 AT5G05090 51.724 58 28 0 161 218 80 137 9.46e-12 64.7
MS.gene58102.t1 AT5G61380 29.508 122 83 1 18 136 19 140 1.31e-11 65.9
MS.gene58102.t1 AT3G10760 51.724 58 28 0 161 218 104 161 1.34e-11 65.1
MS.gene58102.t1 AT3G04030 52.727 55 25 1 162 215 45 99 7.65e-11 63.2
MS.gene58102.t1 AT3G04030 52.727 55 25 1 162 215 45 99 8.15e-11 63.2

Find 55 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTTGATTCTCGATTAA+AGG 0.164354 4.2:-9438350 None:intergenic
GGAATATGGTATATTCAATT+AGG 0.202842 4.2:+9439153 MS.gene58102:CDS
AATTGCATCGACAATTTCTA+AGG 0.211162 4.2:+9438501 MS.gene58102:CDS
TGTTTCCATCAAAAGTTTAA+AGG 0.235719 4.2:-9438033 None:intergenic
CAAACGGGGCTTGCGAATAT+TGG 0.275266 4.2:+9438321 MS.gene58102:CDS
TCCAGTTACAACATGTTCTA+AGG 0.282036 4.2:+9438001 MS.gene58102:intron
ATCGCTTTATGAATTGCTTT+TGG 0.284723 4.2:-9438665 None:intergenic
TAAAGAATAGAAAGTCAAAA+AGG 0.285756 4.2:+9438870 MS.gene58102:CDS
ATTCTTTAGATGTGTCTCTT+TGG 0.286927 4.2:-9438855 None:intergenic
ACATTTCCACAACAGCATTA+AGG 0.328612 4.2:-9437830 None:intergenic
AGAAATTGTCGATGCAATTC+AGG 0.341097 4.2:-9438497 None:intergenic
GCACAACCTCCATCGGAATA+TGG 0.347834 4.2:+9439139 MS.gene58102:CDS
CTCTTAAATCCTCTGGGAAT+TGG 0.352622 4.2:-9437779 None:intergenic
GCAAGTTGCTAGCCATTTGC+AGG 0.355161 4.2:+9438712 MS.gene58102:CDS
CTAAGGGTTGTGAATGAACT+TGG 0.358456 4.2:+9438518 MS.gene58102:CDS
CATAAAGCGATGAATGTTCC+TGG 0.373937 4.2:+9438677 MS.gene58102:CDS
ATATACGATTCTTCTTCGTT+AGG 0.374538 4.2:-9438466 None:intergenic
TATACGATTCTTCTTCGTTA+GGG 0.386785 4.2:-9438465 None:intergenic
GAATATGGTATATTCAATTA+GGG 0.387647 4.2:+9439154 MS.gene58102:CDS
GAACTCAATTGTGTTTCGTT+AGG 0.423423 4.2:-9438929 None:intergenic
ACAAGAACTCTTAAATCCTC+TGG 0.429240 4.2:-9437786 None:intergenic
AACAAACCTTGATAATTGCT+TGG 0.435234 4.2:-9437858 None:intergenic
AGAGTTGTCGTTGCATTGTA+TGG 0.450449 4.2:-9439002 None:intergenic
TGACAGGAATATTGATTTGT+TGG 0.454324 4.2:-9438133 None:intergenic
TAAATCCTCTGGGAATTGGC+TGG 0.455635 4.2:-9437775 None:intergenic
TGATGAAAGCTGTTGCAAAC+GGG 0.461960 4.2:+9438306 MS.gene58102:CDS
ATAAACATAATCAAAGCAAA+AGG 0.469172 4.2:+9438414 MS.gene58102:CDS
TCTATTCCAAGCAATTATCA+AGG 0.472629 4.2:+9437852 MS.gene58102:CDS
AAATCATATGAATCCATGTC+TGG 0.476246 4.2:-9438095 None:intergenic
TAAACATAATCAAAGCAAAA+GGG 0.478480 4.2:+9438415 MS.gene58102:CDS
GTGATGAAAGCTGTTGCAAA+CGG 0.482441 4.2:+9438305 MS.gene58102:CDS
TATATATTCTTACTGATGAC+AGG 0.490720 4.2:-9438149 None:intergenic
GACAGGAATATTGATTTGTT+GGG 0.492437 4.2:-9438132 None:intergenic
CGAAGAAGAATCGTATATCA+TGG 0.494656 4.2:+9438471 MS.gene58102:CDS
TGATTTGTTGGGTAACATGT+CGG 0.535639 4.2:-9438121 None:intergenic
ATAGTGATGATGAATCATCT+TGG 0.538208 4.2:-9439111 None:intergenic
AGAGGATTTAAGAGTTCTTG+TGG 0.539349 4.2:+9437788 MS.gene58102:CDS
CAAGAACTCTTAAATCCTCT+GGG 0.542866 4.2:-9437785 None:intergenic
CATCTTGGATCATGTAGGAC+TGG 0.543187 4.2:-9439096 None:intergenic
TGAAGCTCAAATGCCAGACA+TGG 0.549847 4.2:+9438082 MS.gene58102:CDS
TGTGCAGTGATGTGTGATGA+TGG 0.552839 4.2:+9438269 MS.gene58102:intron
AAATCCTCTGGGAATTGGCT+GGG 0.555538 4.2:-9437774 None:intergenic
TGATGTCCTTAATGCTGTTG+TGG 0.557832 4.2:+9437824 MS.gene58102:CDS
ATACGAAGCACAACCTCCAT+CGG 0.580105 4.2:+9439132 MS.gene58102:CDS
ATACGATTCTTCTTCGTTAG+GGG 0.588904 4.2:-9438464 None:intergenic
AATATACCATATTCCGATGG+AGG 0.592529 4.2:-9439145 None:intergenic
ATTGCATCGACAATTTCTAA+GGG 0.597352 4.2:+9438502 MS.gene58102:CDS
AGAATCAAATCAAGAACATG+TGG 0.615053 4.2:+9438360 MS.gene58102:CDS
GATGAAAGCTGTTGCAAACG+GGG 0.621578 4.2:+9438307 MS.gene58102:CDS
AAACATAATCAAAGCAAAAG+GGG 0.630491 4.2:+9438416 MS.gene58102:CDS
TGAATCATCTTGGATCATGT+AGG 0.631847 4.2:-9439101 None:intergenic
TTGAATATACCATATTCCGA+TGG 0.640230 4.2:-9439148 None:intergenic
AACAAAGGGCTGTGTTGATG+TGG 0.643059 4.2:+9438052 MS.gene58102:CDS
ACATGTGGCAGTGTGTTGCA+AGG 0.672995 4.2:+9438375 MS.gene58102:CDS
ACTTCCCAGCCAATTCCCAG+AGG 0.715638 4.2:+9437770 MS.gene58102:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGAGAAAATAAAAATTAT+TGG - chr4.2:9438566-9438585 None:intergenic 15.0%
!! AAAGAATAGAAAGTCAAAAA+GGG + chr4.2:9438871-9438890 MS.gene58102:CDS 20.0%
!! ATAAACATAATCAAAGCAAA+AGG + chr4.2:9438414-9438433 MS.gene58102:CDS 20.0%
!! TAAACATAATCAAAGCAAAA+GGG + chr4.2:9438415-9438434 MS.gene58102:CDS 20.0%
!! TAAAGAATAGAAAGTCAAAA+AGG + chr4.2:9438870-9438889 MS.gene58102:CDS 20.0%
!!! TGTTTTTTGTATTAATGTAG+TGG + chr4.2:9438737-9438756 MS.gene58102:intron 20.0%
! AAACATAATCAAAGCAAAAG+GGG + chr4.2:9438416-9438435 MS.gene58102:CDS 25.0%
! AAGAATAGAAAGTCAAAAAG+GGG + chr4.2:9438872-9438891 MS.gene58102:CDS 25.0%
! GAAAAAGAATCTTACTATCA+AGG - chr4.2:9438544-9438563 None:intergenic 25.0%
! TATATATTCTTACTGATGAC+AGG - chr4.2:9438152-9438171 None:intergenic 25.0%
! TGTTTCCATCAAAAGTTTAA+AGG - chr4.2:9438036-9438055 None:intergenic 25.0%
!! AAACTTTTGATGGAAACAAA+GGG + chr4.2:9438038-9438057 MS.gene58102:CDS 25.0%
!! CTGAGTTCATTAAATTTTCT+GGG - chr4.2:9438982-9439001 None:intergenic 25.0%
!! TAAACTTTTGATGGAAACAA+AGG + chr4.2:9438037-9438056 MS.gene58102:CDS 25.0%
!! TTGATTTGATTCTCGATTAA+AGG - chr4.2:9438353-9438372 None:intergenic 25.0%
!! TTTTGCCTTTAAACTTTTGA+TGG + chr4.2:9438028-9438047 MS.gene58102:CDS 25.0%
AAATCATATGAATCCATGTC+TGG - chr4.2:9438098-9438117 None:intergenic 30.0%
ACAAAAAACAAACCTGCAAA+TGG - chr4.2:9438727-9438746 None:intergenic 30.0%
AGAATAGAAAGTCAAAAAGG+GGG + chr4.2:9438873-9438892 MS.gene58102:CDS 30.0%
AGAATCAAATCAAGAACATG+TGG + chr4.2:9438360-9438379 MS.gene58102:CDS 30.0%
ATATACGATTCTTCTTCGTT+AGG - chr4.2:9438469-9438488 None:intergenic 30.0%
ATTCTTTAGATGTGTCTCTT+TGG - chr4.2:9438858-9438877 None:intergenic 30.0%
CAAAAGTTCAAGAATTTCAC+AGG - chr4.2:9437937-9437956 None:intergenic 30.0%
TATACGATTCTTCTTCGTTA+GGG - chr4.2:9438468-9438487 None:intergenic 30.0%
TCTATTCCAAGCAATTATCA+AGG + chr4.2:9437852-9437871 MS.gene58102:CDS 30.0%
TTGAATATACCATATTCCGA+TGG - chr4.2:9439151-9439170 None:intergenic 30.0%
! AACAAACCTTGATAATTGCT+TGG - chr4.2:9437861-9437880 None:intergenic 30.0%
! AATTGCATCGACAATTTCTA+AGG + chr4.2:9438501-9438520 MS.gene58102:CDS 30.0%
! ATAGTGATGATGAATCATCT+TGG - chr4.2:9439114-9439133 None:intergenic 30.0%
! ATCGCTTTATGAATTGCTTT+TGG - chr4.2:9438668-9438687 None:intergenic 30.0%
! ATTGCATCGACAATTTCTAA+GGG + chr4.2:9438502-9438521 MS.gene58102:CDS 30.0%
! CTGTGAAATTCTTGAACTTT+TGG + chr4.2:9437935-9437954 MS.gene58102:intron 30.0%
! GCTGAGTTCATTAAATTTTC+TGG - chr4.2:9438983-9439002 None:intergenic 30.0%
!! GACAGGAATATTGATTTGTT+GGG - chr4.2:9438135-9438154 None:intergenic 30.0%
!! TGACAGGAATATTGATTTGT+TGG - chr4.2:9438136-9438155 None:intergenic 30.0%
AATATACCATATTCCGATGG+AGG - chr4.2:9439148-9439167 None:intergenic 35.0%
ACAAGAACTCTTAAATCCTC+TGG - chr4.2:9437789-9437808 None:intergenic 35.0%
ACATTTCCACAACAGCATTA+AGG - chr4.2:9437833-9437852 None:intergenic 35.0%
AGAAATTGTCGATGCAATTC+AGG - chr4.2:9438500-9438519 None:intergenic 35.0%
AGAGGATTTAAGAGTTCTTG+TGG + chr4.2:9437788-9437807 MS.gene58102:CDS 35.0%
ATACGATTCTTCTTCGTTAG+GGG - chr4.2:9438467-9438486 None:intergenic 35.0%
CAAGAACTCTTAAATCCTCT+GGG - chr4.2:9437788-9437807 None:intergenic 35.0%
CGAAGAAGAATCGTATATCA+TGG + chr4.2:9438471-9438490 MS.gene58102:CDS 35.0%
GAACTCAATTGTGTTTCGTT+AGG - chr4.2:9438932-9438951 None:intergenic 35.0%
GGAGAGACAAAAATTTACAC+AGG - chr4.2:9438625-9438644 None:intergenic 35.0%
TAGAACATGTTGTAACTGGA+AGG - chr4.2:9438001-9438020 None:intergenic 35.0%
TCCAGTTACAACATGTTCTA+AGG + chr4.2:9438001-9438020 MS.gene58102:intron 35.0%
TGAATCATCTTGGATCATGT+AGG - chr4.2:9439104-9439123 None:intergenic 35.0%
! GCTTTGCCTCTGAAAAATAA+GGG - chr4.2:9438646-9438665 None:intergenic 35.0%
!! TGATTTGTTGGGTAACATGT+CGG - chr4.2:9438124-9438143 None:intergenic 35.0%
AGAGTTGTCGTTGCATTGTA+TGG - chr4.2:9439005-9439024 None:intergenic 40.0%
ATAGAAAGTCAAAAAGGGGG+CGG + chr4.2:9438876-9438895 MS.gene58102:CDS 40.0%
CATAAAGCGATGAATGTTCC+TGG + chr4.2:9438677-9438696 MS.gene58102:CDS 40.0%
CTAAGGGTTGTGAATGAACT+TGG + chr4.2:9438518-9438537 MS.gene58102:CDS 40.0%
GCCTTAGAACATGTTGTAAC+TGG - chr4.2:9438005-9438024 None:intergenic 40.0%
GTGATGAAAGCTGTTGCAAA+CGG + chr4.2:9438305-9438324 MS.gene58102:CDS 40.0%
TGATGAAAGCTGTTGCAAAC+GGG + chr4.2:9438306-9438325 MS.gene58102:CDS 40.0%
TGATGTCCTTAATGCTGTTG+TGG + chr4.2:9437824-9437843 MS.gene58102:CDS 40.0%
! ACTTGCTCTTTTGTCAAACC+AGG - chr4.2:9438698-9438717 None:intergenic 40.0%
! CTCTTAAATCCTCTGGGAAT+TGG - chr4.2:9437782-9437801 None:intergenic 40.0%
! GGCTTTGCCTCTGAAAAATA+AGG - chr4.2:9438647-9438666 None:intergenic 40.0%
!! GGACTGGTCAGTAAAAATGT+TGG - chr4.2:9439083-9439102 None:intergenic 40.0%
!!! GTCTCTCCCTTATTTTTCAG+AGG + chr4.2:9438637-9438656 MS.gene58102:intron 40.0%
ATACGAAGCACAACCTCCAT+CGG + chr4.2:9439132-9439151 MS.gene58102:CDS 45.0%
CATCTTGGATCATGTAGGAC+TGG - chr4.2:9439099-9439118 None:intergenic 45.0%
GATGAAAGCTGTTGCAAACG+GGG + chr4.2:9438307-9438326 MS.gene58102:CDS 45.0%
TGAAGCTCAAATGCCAGACA+TGG + chr4.2:9438082-9438101 MS.gene58102:CDS 45.0%
TGTGCAGTGATGTGTGATGA+TGG + chr4.2:9438269-9438288 MS.gene58102:intron 45.0%
! AAATCCTCTGGGAATTGGCT+GGG - chr4.2:9437777-9437796 None:intergenic 45.0%
! AACAAAGGGCTGTGTTGATG+TGG + chr4.2:9438052-9438071 MS.gene58102:CDS 45.0%
! TAAATCCTCTGGGAATTGGC+TGG - chr4.2:9437778-9437797 None:intergenic 45.0%
ACATGTGGCAGTGTGTTGCA+AGG + chr4.2:9438375-9438394 MS.gene58102:CDS 50.0%
CAAACGGGGCTTGCGAATAT+TGG + chr4.2:9438321-9438340 MS.gene58102:CDS 50.0%
GCAAGTTGCTAGCCATTTGC+AGG + chr4.2:9438712-9438731 MS.gene58102:CDS 50.0%
GCACAACCTCCATCGGAATA+TGG + chr4.2:9439139-9439158 MS.gene58102:CDS 50.0%
ACTTCCCAGCCAATTCCCAG+AGG + chr4.2:9437770-9437789 MS.gene58102:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 9437744 9439174 9437744 ID=MS.gene58102
chr4.2 mRNA 9437744 9439174 9437744 ID=MS.gene58102.t1;Parent=MS.gene58102
chr4.2 exon 9437744 9437873 9437744 ID=MS.gene58102.t1.exon1;Parent=MS.gene58102.t1
chr4.2 CDS 9437744 9437873 9437744 ID=cds.MS.gene58102.t1;Parent=MS.gene58102.t1
chr4.2 exon 9438006 9438158 9438006 ID=MS.gene58102.t1.exon2;Parent=MS.gene58102.t1
chr4.2 CDS 9438006 9438158 9438006 ID=cds.MS.gene58102.t1;Parent=MS.gene58102.t1
chr4.2 exon 9438276 9438548 9438276 ID=MS.gene58102.t1.exon3;Parent=MS.gene58102.t1
chr4.2 CDS 9438276 9438548 9438276 ID=cds.MS.gene58102.t1;Parent=MS.gene58102.t1
chr4.2 exon 9438657 9438733 9438657 ID=MS.gene58102.t1.exon4;Parent=MS.gene58102.t1
chr4.2 CDS 9438657 9438733 9438657 ID=cds.MS.gene58102.t1;Parent=MS.gene58102.t1
chr4.2 exon 9438827 9439174 9438827 ID=MS.gene58102.t1.exon5;Parent=MS.gene58102.t1
chr4.2 CDS 9438827 9439174 9438827 ID=cds.MS.gene58102.t1;Parent=MS.gene58102.t1
Gene Sequence

>MS.gene58102

ATGGCTCTTTTTAACGATATAGAGTCACTTCCCAGCCAATTCCCAGAGGATTTAAGAGTTCTTGTGGTTGATCATGACACTGATGTCCTTAATGCTGTTGTGGAAATGTCTATTCCAAGCAATTATCAAGGTTTGTTAATTAATTTATCATATATACTTTGTTCAATTGCAGATTAAATTATGTTATTAACCTGTGAAATTCTTGAACTTTTGGCATAATTTCTTACTTGTGTATTTTTATGTATTCTTTTTTTCCTTCCAGTTACAACATGTTCTAAGGCTTCTTTTGCCTTTAAACTTTTGATGGAAACAAAGGGCTGTGTTGATGTGGTACTAATTGAAGCTCAAATGCCAGACATGGATTCATATGATTTTGTCCGACATGTTACCCAACAAATCAATATTCCTGTCATCAGTAAGAATATATATAATTAACTATATTACAAAATTATATCACATAATTAATTTATTCATATACTTATGTATGACATTGTTATTTATTATTTAATTATAATGTTAATTACATGTGCAGTGATGTGTGATGATGGATCAACAAGTGCAGTGATGAAAGCTGTTGCAAACGGGGCTTGCGAATATTGGATTAAGCCTTTAATCGAGAATCAAATCAAGAACATGTGGCAGTGTGTTGCAAGGAAATTTTTCAATGAAAATAAACATAATCAAAGCAAAAGGGGAAGAGATGATAATGCTAATTATCAACCCCTAACGAAGAAGAATCGTATATCATGGACACCTGAATTGCATCGACAATTTCTAAGGGTTGTGAATGAACTTGGCCTTGATAGTAAGATTCTTTTTCCAATAATTTTTATTTTCTCTCTCTTATTTTCTTTGTTTGTATACTTCAAGAAACTAAACCTGTGTAAATTTTTGTCTCTCCCTTATTTTTCAGAGGCAAAGCCAAAAGCAATTCATAAAGCGATGAATGTTCCTGGTTTGACAAAAGAGCAAGTTGCTAGCCATTTGCAGGTTTGTTTTTTGTATTAATGTAGTGGTAGTGATTTTGTTTTGTGTGATTTTAAATTATAATATATATTAACATTAAGATTTGAATATTGACAGAGAGTGATACTTGATTTGAAGAGTTCAACCAAAGAGACACATCTAAAGAATAGAAAGTCAAAAAGGGGGCGGAAAAAATCAAAGTTTGATCAATATGATGTTCCTAACGAAACACAATTGAGTTCTGAAGCTGTTCACTCAATACAACAAGACCCAGAAAATTTAATGAACTCAGCCATACAATGCAACGACAACTCTCATGCACAACAAGATCTGATGACATTCGACGATTATGAAGATTTTGACATTATTGCCAACATTTTTACTGACCAGTCCTACATGATCCAAGATGATTCATCATCACTATACGAAGCACAACCTCCATCGGAATATGGTATATTCAATTAG
Protein sequence

>MS.gene58102.t1

MALFNDIESLPSQFPEDLRVLVVDHDTDVLNAVVEMSIPSNYQVTTCSKASFAFKLLMETKGCVDVVLIEAQMPDMDSYDFVRHVTQQINIPVIMMCDDGSTSAVMKAVANGACEYWIKPLIENQIKNMWQCVARKFFNENKHNQSKRGRDDNANYQPLTKKNRISWTPELHRQFLRVVNELGLDKAKPKAIHKAMNVPGLTKEQVASHLQRVILDLKSSTKETHLKNRKSKRGRKKSKFDQYDVPNETQLSSEAVHSIQQDPENLMNSAIQCNDNSHAQQDLMTFDDYEDFDIIANIFTDQSYMIQDDSSSLYEAQPPSEYGIFN