Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58115.t1 | AET04670.2 | 92.2 | 256 | 19 | 1 | 1 | 255 | 1 | 256 | 3.50E-122 | 448 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58115.t1 | Q8VWK4 | 47.5 | 261 | 118 | 7 | 1 | 256 | 1 | 247 | 3.6e-51 | 203.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58115.t1 | G7LCB1 | 92.2 | 256 | 19 | 1 | 1 | 255 | 1 | 256 | 2.5e-122 | 448.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene58115.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58115.t1 | MTR_8g092810 | 95.257 | 253 | 11 | 1 | 1 | 252 | 1 | 253 | 5.33e-175 | 492 |
| MS.gene58115.t1 | MTR_2g031870 | 64.919 | 248 | 77 | 2 | 1 | 247 | 1 | 239 | 3.78e-108 | 316 |
| MS.gene58115.t1 | MTR_8g494240 | 64.400 | 250 | 73 | 5 | 1 | 247 | 1 | 237 | 1.08e-103 | 305 |
| MS.gene58115.t1 | MTR_8g494240 | 64.400 | 250 | 73 | 5 | 1 | 247 | 1 | 237 | 1.88e-103 | 305 |
| MS.gene58115.t1 | MTR_8g494240 | 64.400 | 250 | 73 | 5 | 1 | 247 | 1 | 237 | 3.03e-102 | 305 |
| MS.gene58115.t1 | MTR_8g494240 | 42.857 | 112 | 34 | 3 | 3 | 114 | 304 | 385 | 2.05e-15 | 76.3 |
| MS.gene58115.t1 | MTR_2g031870 | 56.048 | 248 | 73 | 3 | 1 | 247 | 1 | 213 | 6.10e-83 | 251 |
| MS.gene58115.t1 | MTR_0095s0040 | 67.532 | 154 | 48 | 1 | 1 | 152 | 1 | 154 | 7.06e-69 | 214 |
| MS.gene58115.t1 | MTR_4g097130 | 40.152 | 264 | 128 | 6 | 1 | 247 | 1 | 251 | 5.84e-54 | 178 |
| MS.gene58115.t1 | MTR_4g097130 | 40.152 | 264 | 128 | 6 | 1 | 247 | 1 | 251 | 6.90e-54 | 178 |
| MS.gene58115.t1 | MTR_4g097130 | 39.033 | 269 | 129 | 6 | 1 | 247 | 1 | 256 | 1.37e-52 | 175 |
| MS.gene58115.t1 | MTR_5g015340 | 44.554 | 303 | 153 | 4 | 1 | 301 | 1 | 290 | 3.80e-49 | 165 |
| MS.gene58115.t1 | MTR_5g015340 | 44.554 | 303 | 153 | 4 | 1 | 301 | 1 | 290 | 3.80e-49 | 165 |
| MS.gene58115.t1 | MTR_5g015340 | 44.554 | 303 | 153 | 4 | 1 | 301 | 1 | 290 | 4.82e-48 | 165 |
| MS.gene58115.t1 | MTR_1g088180 | 52.381 | 126 | 49 | 3 | 125 | 250 | 295 | 409 | 1.38e-31 | 122 |
| MS.gene58115.t1 | MTR_8g018410 | 32.237 | 304 | 165 | 8 | 1 | 295 | 1 | 272 | 1.64e-30 | 116 |
| MS.gene58115.t1 | MTR_2g099610 | 32.877 | 219 | 102 | 5 | 1 | 187 | 1 | 206 | 2.41e-26 | 105 |
| MS.gene58115.t1 | MTR_1g041765 | 67.188 | 64 | 21 | 0 | 1 | 64 | 1 | 64 | 4.94e-25 | 99.8 |
| MS.gene58115.t1 | MTR_2g031880 | 48.624 | 109 | 48 | 2 | 60 | 168 | 2 | 102 | 1.25e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58115.t1 | AT1G49950 | 47.244 | 254 | 115 | 7 | 1 | 249 | 1 | 240 | 1.89e-66 | 210 |
| MS.gene58115.t1 | AT1G49950 | 47.244 | 254 | 115 | 7 | 1 | 249 | 1 | 240 | 1.89e-66 | 210 |
| MS.gene58115.t1 | AT1G49950 | 47.244 | 254 | 115 | 7 | 1 | 249 | 1 | 240 | 1.89e-66 | 210 |
| MS.gene58115.t1 | AT5G67580 | 42.053 | 302 | 160 | 6 | 1 | 298 | 1 | 291 | 1.05e-42 | 149 |
| MS.gene58115.t1 | AT5G67580 | 42.053 | 302 | 160 | 6 | 1 | 298 | 1 | 291 | 1.05e-42 | 149 |
| MS.gene58115.t1 | AT3G49850 | 36.073 | 219 | 137 | 3 | 1 | 218 | 1 | 217 | 3.76e-38 | 137 |
| MS.gene58115.t1 | AT3G49850 | 36.073 | 219 | 137 | 3 | 1 | 218 | 1 | 217 | 3.76e-38 | 137 |
| MS.gene58115.t1 | AT1G72740 | 36.316 | 190 | 113 | 3 | 1 | 187 | 1 | 185 | 8.25e-29 | 112 |
| MS.gene58115.t1 | AT1G72740 | 36.957 | 184 | 108 | 3 | 1 | 181 | 1 | 179 | 2.21e-27 | 108 |
| MS.gene58115.t1 | AT1G17520 | 35.638 | 188 | 116 | 1 | 1 | 183 | 1 | 188 | 1.07e-24 | 101 |
| MS.gene58115.t1 | AT1G17520 | 34.737 | 190 | 119 | 1 | 1 | 185 | 1 | 190 | 2.79e-24 | 100 |
| MS.gene58115.t1 | AT1G17520 | 35.979 | 189 | 115 | 2 | 1 | 183 | 1 | 189 | 8.35e-24 | 99.0 |
| MS.gene58115.t1 | AT1G17520 | 35.079 | 191 | 118 | 2 | 1 | 185 | 1 | 191 | 2.36e-23 | 97.4 |
Find 73 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGATATGCTGGAAATTA+AGG | 0.140872 | 4.2:+9557269 | MS.gene58115:CDS |
| AACTATTGCTTCTTTCATTA+AGG | 0.194532 | 4.2:+9558221 | MS.gene58115:CDS |
| ACTCTCAGCTAGCAATAAAA+AGG | 0.232134 | 4.2:+9557145 | MS.gene58115:CDS |
| TAGATATTGCTTCCACTATA+AGG | 0.286103 | 4.2:-9558167 | None:intergenic |
| AAGAAACCGACCCATGTTAT+TGG | 0.308143 | 4.2:+9560664 | MS.gene58115:CDS |
| TGTGGGTTGGATAGGATAAA+TGG | 0.326262 | 4.2:+9557079 | MS.gene58115:intron |
| TGAAGCATGGCGTAGGTAAA+TGG | 0.346059 | 4.2:+9556879 | MS.gene58115:CDS |
| TTCCTCTATCTGAATATGCT+TGG | 0.349369 | 4.2:-9560643 | None:intergenic |
| AAATAAGCTGTCAGCAAAAC+TGG | 0.353881 | 4.2:+9559654 | MS.gene58115:CDS |
| TCCTCTATCTGAATATGCTT+GGG | 0.366075 | 4.2:-9560642 | None:intergenic |
| GGCTGAGATAGACTTGGAAT+TGG | 0.370284 | 4.2:+9560772 | MS.gene58115:CDS |
| CTATTAAATCTGACAGGGGT+GGG | 0.403434 | 4.2:+9560705 | MS.gene58115:CDS |
| CTGCCTCCCTTCCAATAACA+TGG | 0.405900 | 4.2:-9560675 | None:intergenic |
| ACAGATATGCTGGAAATTAA+GGG | 0.415666 | 4.2:+9557270 | MS.gene58115:CDS |
| GAGGAAGCGGCTCTCAAAGC+TGG | 0.427705 | 4.2:+9556851 | MS.gene58115:CDS |
| ACGGAGTCGTCACGCTGTTC+TGG | 0.440395 | 4.2:-9557183 | None:intergenic |
| TATTAAATCTGACAGGGGTG+GGG | 0.448513 | 4.2:+9560706 | MS.gene58115:CDS |
| TCAAGTTAAAACAGATATGC+TGG | 0.453383 | 4.2:+9557260 | MS.gene58115:CDS |
| AATCTGCCGGTGCGCAGTAT+TGG | 0.455578 | 4.2:-9559627 | None:intergenic |
| ATTAAATCTGACAGGGGTGG+GGG | 0.463232 | 4.2:+9560707 | MS.gene58115:CDS |
| AAGCCTCTATTAAATCTGAC+AGG | 0.463302 | 4.2:+9560699 | MS.gene58115:CDS |
| AATATGAGTCTGAAGGCAAA+TGG | 0.474909 | 4.2:+9557105 | MS.gene58115:CDS |
| ACCCAAGCATATTCAGATAG+AGG | 0.477513 | 4.2:+9560641 | MS.gene58115:CDS |
| AGGCAAATGGATCATCCTCC+GGG | 0.485206 | 4.2:+9557118 | MS.gene58115:CDS |
| CGCCATGGCAGAAGCTGAAG+AGG | 0.487462 | 4.2:+9560865 | MS.gene58115:CDS |
| ACCCCTGTCAGATTTAATAG+AGG | 0.496957 | 4.2:-9560702 | None:intergenic |
| TGCCTCTTCAGCTTCTGCCA+TGG | 0.502504 | 4.2:-9560867 | None:intergenic |
| AAGGCAAATGGATCATCCTC+CGG | 0.503120 | 4.2:+9557117 | MS.gene58115:CDS |
| CAGATTGGACAACCTTATAG+TGG | 0.503998 | 4.2:+9558155 | MS.gene58115:intron |
| CTGGTGGATCTTGTATCTAG+TGG | 0.509226 | 4.2:+9559673 | MS.gene58115:CDS |
| GTCCGGAAAGGTCTATCAAA+AGG | 0.511188 | 4.2:+9557292 | MS.gene58115:CDS |
| TATGCTGGAAATTAAGGGTC+CGG | 0.513448 | 4.2:+9557275 | MS.gene58115:CDS |
| TTATATTTCAGGTGAAACAT+AGG | 0.516350 | 4.2:+9560603 | MS.gene58115:intron |
| TCCCTTCCAATAACATGGGT+CGG | 0.537016 | 4.2:-9560670 | None:intergenic |
| ATCTAGTGGAAAACTGATCA+AGG | 0.537966 | 4.2:+9559687 | MS.gene58115:CDS |
| AAAGTCCATGTCTTTACAAG+AGG | 0.539777 | 4.2:+9560802 | MS.gene58115:CDS |
| TGCTGAAGCAGAAGCCGCCA+TGG | 0.540719 | 4.2:+9560850 | MS.gene58115:CDS |
| AGAGGCAACAAAGGAGGCAG+AGG | 0.547850 | 4.2:+9560883 | MS.gene58115:CDS |
| AGAAGCTGAAGAGGCAACAA+AGG | 0.557008 | 4.2:+9560874 | MS.gene58115:CDS |
| CCGCTCAAATATCGATCTCA+AGG | 0.560055 | 4.2:+9556946 | MS.gene58115:CDS |
| AAGAAAGGCTGAGATAGACT+TGG | 0.566957 | 4.2:+9560766 | MS.gene58115:CDS |
| CTCTTCAGCTTCTGCCATGG+CGG | 0.568303 | 4.2:-9560864 | None:intergenic |
| AACCGACCCATGTTATTGGA+AGG | 0.571066 | 4.2:+9560668 | MS.gene58115:CDS |
| ATGGTCATCAGAAGAGGAAG+CGG | 0.577986 | 4.2:+9556838 | MS.gene58115:CDS |
| ACAGAAATGGTCATCAGAAG+AGG | 0.578108 | 4.2:+9556832 | MS.gene58115:CDS |
| AGCAATATCTAGCTTGAATG+AGG | 0.580943 | 4.2:+9558179 | MS.gene58115:CDS |
| CTATCTGAATATGCTTGGGT+AGG | 0.584721 | 4.2:-9560638 | None:intergenic |
| TGCCTCCCTTCCAATAACAT+GGG | 0.597068 | 4.2:-9560674 | None:intergenic |
| ATGGAGAAATATGAGTCTGA+AGG | 0.599241 | 4.2:+9557098 | MS.gene58115:CDS |
| TGGGTGCTACTAGACAGAAA+TGG | 0.601772 | 4.2:+9556819 | MS.gene58115:CDS |
| AGCCTCTATTAAATCTGACA+GGG | 0.601960 | 4.2:+9560700 | MS.gene58115:CDS |
| GGAGTTGTGAAGCATGGCGT+AGG | 0.603718 | 4.2:+9556872 | MS.gene58115:CDS |
| TGCTAGCTGAGAGTTGTCCC+CGG | 0.606787 | 4.2:-9557136 | None:intergenic |
| ACCGACCCATGTTATTGGAA+GGG | 0.613264 | 4.2:+9560669 | MS.gene58115:CDS |
| TCTATTAAATCTGACAGGGG+TGG | 0.615717 | 4.2:+9560704 | MS.gene58115:CDS |
| AAAGCTGGAGTTGTGAAGCA+TGG | 0.620365 | 4.2:+9556866 | MS.gene58115:CDS |
| AGCTGAAGAGGCAACAAAGG+AGG | 0.624067 | 4.2:+9560877 | MS.gene58115:CDS |
| TAAGCTGTCAGCAAAACTGG+TGG | 0.625095 | 4.2:+9559657 | MS.gene58115:CDS |
| AGAAGCAGAAGCTGATGCAG+CGG | 0.627843 | 4.2:+9560910 | MS.gene58115:CDS |
| TACAACACATGGTTAAACTC+AGG | 0.630999 | 4.2:-9556920 | None:intergenic |
| CCTTGAGATCGATATTTGAG+CGG | 0.641849 | 4.2:-9556946 | None:intergenic |
| GACCCATGTTATTGGAAGGG+AGG | 0.641977 | 4.2:+9560672 | MS.gene58115:CDS |
| TGGAAATTAAGGGTCCGGAA+AGG | 0.649175 | 4.2:+9557280 | MS.gene58115:CDS |
| TCTAGCTTGAATGAGGTCGA+TGG | 0.649394 | 4.2:+9558186 | MS.gene58115:CDS |
| GTAGAACCAATACTGCGCAC+CGG | 0.653755 | 4.2:+9559621 | MS.gene58115:intron |
| GATTACCTCTTGTAAAGACA+TGG | 0.659824 | 4.2:-9560807 | None:intergenic |
| GCCTCTATTAAATCTGACAG+GGG | 0.668262 | 4.2:+9560701 | MS.gene58115:CDS |
| TAAATGGAGTAAGATACTCA+AGG | 0.669197 | 4.2:+9556895 | MS.gene58115:CDS |
| TTGAGCGGATATACAACACA+TGG | 0.677687 | 4.2:-9556931 | None:intergenic |
| AGAACAGCGTGACGACTCCG+TGG | 0.703510 | 4.2:+9557185 | MS.gene58115:CDS |
| AGTAACGAGATTTACAGCCA+CGG | 0.703562 | 4.2:-9557202 | None:intergenic |
| TAGCTGAGAGTTGTCCCCGG+AGG | 0.710409 | 4.2:-9557133 | None:intergenic |
| GGCAAATGGATCATCCTCCG+GGG | 0.731603 | 4.2:+9557119 | MS.gene58115:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGCTTTTAAATTATTAAATT+TGG | + | chr4.2:9558281-9558300 | MS.gene58115:intron | 10.0% |
| !! | AAAAAAAAGAAAGAAAAAAG+TGG | - | chr4.2:9560258-9560277 | None:intergenic | 15.0% |
| !! | AAATTAAACAAATAACATCA+TGG | - | chr4.2:9558426-9558445 | None:intergenic | 15.0% |
| !! | AATACATTATTATGTGTAAA+GGG | - | chr4.2:9557015-9557034 | None:intergenic | 15.0% |
| !! | ACTAAACAAAACAAAAAATA+TGG | - | chr4.2:9557324-9557343 | None:intergenic | 15.0% |
| !! | ATAATGTATTGAATAAATGT+TGG | + | chr4.2:9557025-9557044 | MS.gene58115:intron | 15.0% |
| !! | CTAAACAAAACAAAAAATAT+GGG | - | chr4.2:9557323-9557342 | None:intergenic | 15.0% |
| !! | TAAACAAAACAAAAAATATG+GGG | - | chr4.2:9557322-9557341 | None:intergenic | 15.0% |
| !! | TAGTATGGTAATTTATTTAA+TGG | + | chr4.2:9557340-9557359 | MS.gene58115:intron | 15.0% |
| !! | TATAAGATGCAATTAAATAA+GGG | - | chr4.2:9557523-9557542 | None:intergenic | 15.0% |
| !! | TCAAAATGAAAAATTTATCT+TGG | + | chr4.2:9557402-9557421 | MS.gene58115:intron | 15.0% |
| !! | TGTTACATAATACATTAATA+GGG | + | chr4.2:9561011-9561030 | MS.gene58115:intron | 15.0% |
| !! | TTCTTCATTTATATATATCA+AGG | + | chr4.2:9558793-9558812 | MS.gene58115:intron | 15.0% |
| !!! | ATTTTGATTAGTACAAAAAT+TGG | + | chr4.2:9558442-9558461 | MS.gene58115:intron | 15.0% |
| !!! | ATTTTTTGTTTTGTTTAGTA+TGG | + | chr4.2:9557325-9557344 | MS.gene58115:intron | 15.0% |
| !!! | GTTTTTGTTCTTTATATTTT+AGG | + | chr4.2:9560471-9560490 | MS.gene58115:intron | 15.0% |
| !! | AAATAGAACTTCTAATATCT+AGG | + | chr4.2:9560214-9560233 | MS.gene58115:intron | 20.0% |
| !! | AAGGTATAATTATGATTTCT+AGG | + | chr4.2:9558240-9558259 | MS.gene58115:intron | 20.0% |
| !! | AGATATTAGAAGTTCTATTT+AGG | - | chr4.2:9560214-9560233 | None:intergenic | 20.0% |
| !! | ATATAATTTAATTGTGCTAC+CGG | + | chr4.2:9557941-9557960 | MS.gene58115:intron | 20.0% |
| !! | ATGTATAACGCAAATAAAAT+TGG | - | chr4.2:9561135-9561154 | None:intergenic | 20.0% |
| !! | ATTTACATATGACGTTATTT+GGG | + | chr4.2:9561105-9561124 | MS.gene58115:intron | 20.0% |
| !! | CAATACATTATTATGTGTAA+AGG | - | chr4.2:9557016-9557035 | None:intergenic | 20.0% |
| !! | CATAGATTATCAAAAAAGAA+AGG | + | chr4.2:9560751-9560770 | MS.gene58115:CDS | 20.0% |
| !! | CATTTCAATATTTAGATGAT+CGG | - | chr4.2:9561200-9561219 | None:intergenic | 20.0% |
| !! | CTAAATATTGAAATGTGATT+AGG | + | chr4.2:9561205-9561224 | MS.gene58115:intron | 20.0% |
| !! | CTATAAGATGCAATTAAATA+AGG | - | chr4.2:9557524-9557543 | None:intergenic | 20.0% |
| !! | CTGTTACATAATACATTAAT+AGG | + | chr4.2:9561010-9561029 | MS.gene58115:intron | 20.0% |
| !! | TATTTACATATGACGTTATT+TGG | + | chr4.2:9561104-9561123 | MS.gene58115:intron | 20.0% |
| !!! | AACTTTTTAACAAATGTCTT+TGG | - | chr4.2:9557383-9557402 | None:intergenic | 20.0% |
| !!! | AATCTATGTCATACTTTTTA+GGG | - | chr4.2:9560739-9560758 | None:intergenic | 20.0% |
| !!! | ACTTTTTAACAAATGTCTTT+GGG | - | chr4.2:9557382-9557401 | None:intergenic | 20.0% |
| !!! | TAATCTATGTCATACTTTTT+AGG | - | chr4.2:9560740-9560759 | None:intergenic | 20.0% |
| !!! | TACATTTTCTAATGTTTACA+TGG | + | chr4.2:9560413-9560432 | MS.gene58115:intron | 20.0% |
| ! | AAAAATCACTAAAATCACTG+CGG | + | chr4.2:9560954-9560973 | MS.gene58115:CDS | 25.0% |
| ! | AAAGCAGAACAAATAAAAGT+TGG | - | chr4.2:9558267-9558286 | None:intergenic | 25.0% |
| ! | AACTATTGCTTCTTTCATTA+AGG | + | chr4.2:9558221-9558240 | MS.gene58115:CDS | 25.0% |
| ! | AAGCAGAACAAATAAAAGTT+GGG | - | chr4.2:9558266-9558285 | None:intergenic | 25.0% |
| ! | AGAAGAAAATGTAAGAAGTA+GGG | + | chr4.2:9558694-9558713 | MS.gene58115:intron | 25.0% |
| ! | ATAAACCAATAGGGATATTA+CGG | - | chr4.2:9557607-9557626 | None:intergenic | 25.0% |
| ! | ATGTAACAGTAGTATTACAA+CGG | - | chr4.2:9560999-9561018 | None:intergenic | 25.0% |
| ! | ATTTATTGTGAGCCATATTT+GGG | + | chr4.2:9560526-9560545 | MS.gene58115:intron | 25.0% |
| ! | CAAAACAAGAGAATGAAATT+AGG | - | chr4.2:9558044-9558063 | None:intergenic | 25.0% |
| ! | CAATCTGTATAATGTAAACA+TGG | - | chr4.2:9558142-9558161 | None:intergenic | 25.0% |
| ! | CAATTAGAGATCTTACTAAT+GGG | + | chr4.2:9560573-9560592 | MS.gene58115:intron | 25.0% |
| ! | CATGTTTACATTATACAGAT+TGG | + | chr4.2:9558140-9558159 | MS.gene58115:intron | 25.0% |
| ! | CTAAGTTAAGGATTCAAAAA+AGG | - | chr4.2:9557495-9557514 | None:intergenic | 25.0% |
| ! | TAATACATTAATAGGGAACA+TGG | + | chr4.2:9561018-9561037 | MS.gene58115:intron | 25.0% |
| ! | TAGAAGAAAATGTAAGAAGT+AGG | + | chr4.2:9558693-9558712 | MS.gene58115:intron | 25.0% |
| ! | TCAATTAGAGATCTTACTAA+TGG | + | chr4.2:9560572-9560591 | MS.gene58115:intron | 25.0% |
| !! | TTATATTTCAGGTGAAACAT+AGG | + | chr4.2:9560603-9560622 | MS.gene58115:intron | 25.0% |
| !!! | AATATCCCTATTGGTTTATT+TGG | + | chr4.2:9557608-9557627 | MS.gene58115:intron | 25.0% |
| !!! | ATATCTGTTTTAACTTGAAG+AGG | - | chr4.2:9557258-9557277 | None:intergenic | 25.0% |
| !!! | ATGCTATTTCAACTTTCAAT+TGG | + | chr4.2:9559440-9559459 | MS.gene58115:intron | 25.0% |
| !!! | TTTCACAACGTATTTTTTTG+TGG | + | chr4.2:9559791-9559810 | MS.gene58115:intron | 25.0% |
| AAAATTATCTTCCACTTCCA+AGG | - | chr4.2:9557683-9557702 | None:intergenic | 30.0% | |
| AACAGATATGCTGGAAATTA+AGG | + | chr4.2:9557269-9557288 | MS.gene58115:CDS | 30.0% | |
| AAGTTCTATAGCATTCCATT+TGG | + | chr4.2:9559516-9559535 | MS.gene58115:intron | 30.0% | |
| ACAGATATGCTGGAAATTAA+GGG | + | chr4.2:9557270-9557289 | MS.gene58115:CDS | 30.0% | |
| ATATACTAAGCTTCCATTCA+TGG | - | chr4.2:9559370-9559389 | None:intergenic | 30.0% | |
| ATCAAAGCAATTATGGTGTA+CGG | - | chr4.2:9559179-9559198 | None:intergenic | 30.0% | |
| ATCTCAATGTTTGGTTATGT+GGG | + | chr4.2:9557062-9557081 | MS.gene58115:intron | 30.0% | |
| ATTGCTTACACATGAATAGA+AGG | + | chr4.2:9558816-9558835 | MS.gene58115:intron | 30.0% | |
| CATCAAACGATATTGAAACA+TGG | + | chr4.2:9559881-9559900 | MS.gene58115:intron | 30.0% | |
| CATTTATTGTGAGCCATATT+TGG | + | chr4.2:9560525-9560544 | MS.gene58115:intron | 30.0% | |
| TAAATGGAGTAAGATACTCA+AGG | + | chr4.2:9556895-9556914 | MS.gene58115:CDS | 30.0% | |
| TAGATATTGCTTCCACTATA+AGG | - | chr4.2:9558170-9558189 | None:intergenic | 30.0% | |
| TATTGTATGTTTGCATGAGA+TGG | - | chr4.2:9559748-9559767 | None:intergenic | 30.0% | |
| TCAAGTTAAAACAGATATGC+TGG | + | chr4.2:9557260-9557279 | MS.gene58115:CDS | 30.0% | |
| TCAATTGGCTAAATCTTATG+TGG | + | chr4.2:9559455-9559474 | MS.gene58115:intron | 30.0% | |
| TGAGATCTTCAAAAGATATC+CGG | + | chr4.2:9557702-9557721 | MS.gene58115:intron | 30.0% | |
| TGGCAAAATCAAAGCAATTA+TGG | - | chr4.2:9559186-9559205 | None:intergenic | 30.0% | |
| TTCGACCAAATAAACCAATA+GGG | - | chr4.2:9557616-9557635 | None:intergenic | 30.0% | |
| TTTCGACCAAATAAACCAAT+AGG | - | chr4.2:9557617-9557636 | None:intergenic | 30.0% | |
| ! | AAAGAAAAAAGTGGCTTGTA+AGG | - | chr4.2:9560249-9560268 | None:intergenic | 30.0% |
| ! | CATTTCAGAGACTTTCTTTT+AGG | + | chr4.2:9561244-9561263 | MS.gene58115:intron | 30.0% |
| ! | GTCAAACATTTACTCTAAAG+AGG | + | chr4.2:9560015-9560034 | MS.gene58115:intron | 30.0% |
| ! | GTTTTATATTTACCGCTTCA+TGG | + | chr4.2:9559981-9560000 | MS.gene58115:intron | 30.0% |
| ! | TTTTATCCAATCACCAGTAT+CGG | + | chr4.2:9559814-9559833 | MS.gene58115:intron | 30.0% |
| !! | TAGAAAAGTATCCAACCAAA+TGG | - | chr4.2:9559534-9559553 | None:intergenic | 30.0% |
| !!! | AGCTTATTTTTGAAATCTGC+CGG | - | chr4.2:9559643-9559662 | None:intergenic | 30.0% |
| !!! | ATTGGTTTTTCCATCCAAAA+AGG | - | chr4.2:9558870-9558889 | None:intergenic | 30.0% |
| AAAATCACTGCGGTAAATCT+CGG | + | chr4.2:9560964-9560983 | MS.gene58115:intron | 35.0% | |
| AAATAAGCTGTCAGCAAAAC+TGG | + | chr4.2:9559654-9559673 | MS.gene58115:CDS | 35.0% | |
| AACAGTAGTATTACAACGGA+AGG | - | chr4.2:9560995-9561014 | None:intergenic | 35.0% | |
| AAGCATACACTGTCAAAATG+AGG | - | chr4.2:9558117-9558136 | None:intergenic | 35.0% | |
| AAGCCTCTATTAAATCTGAC+AGG | + | chr4.2:9560699-9560718 | MS.gene58115:CDS | 35.0% | |
| AAGGTGACTACCTTGTAATA+TGG | + | chr4.2:9558503-9558522 | MS.gene58115:intron | 35.0% | |
| AATATGAGTCTGAAGGCAAA+TGG | + | chr4.2:9557105-9557124 | MS.gene58115:CDS | 35.0% | |
| ACATTGAGATCCACATTTGA+CGG | - | chr4.2:9557052-9557071 | None:intergenic | 35.0% | |
| ACCTTCTACATAGAGTTCAA+AGG | - | chr4.2:9558947-9558966 | None:intergenic | 35.0% | |
| ACTCTCAGCTAGCAATAAAA+AGG | + | chr4.2:9557145-9557164 | MS.gene58115:CDS | 35.0% | |
| ACTTTACAACCCTATCCTAT+GGG | + | chr4.2:9559840-9559859 | MS.gene58115:intron | 35.0% | |
| AGATCTTCAAAAGATATCCG+GGG | + | chr4.2:9557704-9557723 | MS.gene58115:intron | 35.0% | |
| AGCCTCTATTAAATCTGACA+GGG | + | chr4.2:9560700-9560719 | MS.gene58115:CDS | 35.0% | |
| ATAAGGGTCATGCTAAGTTA+AGG | - | chr4.2:9557507-9557526 | None:intergenic | 35.0% | |
| ATACATAAAACCTGCTTGTG+AGG | + | chr4.2:9561149-9561168 | MS.gene58115:intron | 35.0% | |
| ATCTAGTGGAAAACTGATCA+AGG | + | chr4.2:9559687-9559706 | MS.gene58115:CDS | 35.0% | |
| ATGAGAATAGCACCCAAATA+TGG | - | chr4.2:9560541-9560560 | None:intergenic | 35.0% | |
| ATGGAGAAATATGAGTCTGA+AGG | + | chr4.2:9557098-9557117 | MS.gene58115:CDS | 35.0% | |
| ATGTTCCTACATTAACCCAT+AGG | - | chr4.2:9559858-9559877 | None:intergenic | 35.0% | |
| CAAATGTGGATCTCAATGTT+TGG | + | chr4.2:9557053-9557072 | MS.gene58115:intron | 35.0% | |
| CCTTCTACATAGAGTTCAAA+GGG | - | chr4.2:9558946-9558965 | None:intergenic | 35.0% | |
| CTACATTAACCCATAGGATA+GGG | - | chr4.2:9559852-9559871 | None:intergenic | 35.0% | |
| CTCTCAGCTAGCAATAAAAA+GGG | + | chr4.2:9557146-9557165 | MS.gene58115:CDS | 35.0% | |
| CTTAGTATATCTTGACCCTT+TGG | + | chr4.2:9559380-9559399 | MS.gene58115:intron | 35.0% | |
| CTTAGTATTTGTCCATGAAG+CGG | - | chr4.2:9559996-9560015 | None:intergenic | 35.0% | |
| GAAAAACCAAAGTCTCACAT+TGG | + | chr4.2:9560055-9560074 | MS.gene58115:intron | 35.0% | |
| GAGATCTTCAAAAGATATCC+GGG | + | chr4.2:9557703-9557722 | MS.gene58115:intron | 35.0% | |
| GATCTCAATGTTTGGTTATG+TGG | + | chr4.2:9557061-9557080 | MS.gene58115:intron | 35.0% | |
| TAAAGTCTCGTCTTGTGTAT+TGG | - | chr4.2:9557756-9557775 | None:intergenic | 35.0% | |
| TACAACACATGGTTAAACTC+AGG | - | chr4.2:9556923-9556942 | None:intergenic | 35.0% | |
| TACATAAAACCTGCTTGTGA+GGG | + | chr4.2:9561150-9561169 | MS.gene58115:intron | 35.0% | |
| TACATCTATACTCACCTAGT+GGG | + | chr4.2:9558582-9558601 | MS.gene58115:intron | 35.0% | |
| TATGTCCTATTCTGCAAACA+AGG | - | chr4.2:9557922-9557941 | None:intergenic | 35.0% | |
| TCAAGCTTCTTTGTGCAAAT+AGG | - | chr4.2:9559286-9559305 | None:intergenic | 35.0% | |
| TCCTCTATCTGAATATGCTT+GGG | - | chr4.2:9560645-9560664 | None:intergenic | 35.0% | |
| TCTATAGCATTCCATTTGGT+TGG | + | chr4.2:9559520-9559539 | MS.gene58115:intron | 35.0% | |
| TGGTTTATTTGGTCGAAATG+CGG | + | chr4.2:9557619-9557638 | MS.gene58115:intron | 35.0% | |
| TTACATCTATACTCACCTAG+TGG | + | chr4.2:9558581-9558600 | MS.gene58115:intron | 35.0% | |
| TTCCTCTATCTGAATATGCT+TGG | - | chr4.2:9560646-9560665 | None:intergenic | 35.0% | |
| TTGTGAATTATCCTTGGAAG+TGG | + | chr4.2:9557669-9557688 | MS.gene58115:intron | 35.0% | |
| ! | AAATGTGATTAGGTTGCAGA+TGG | + | chr4.2:9561215-9561234 | MS.gene58115:intron | 35.0% |
| ! | AACCTTTTGATAGACCTTTC+CGG | - | chr4.2:9557297-9557316 | None:intergenic | 35.0% |
| ! | AGAGCTAGTTTAGAAGAAGA+AGG | + | chr4.2:9559226-9559245 | MS.gene58115:intron | 35.0% |
| ! | AGCAATATCTAGCTTGAATG+AGG | + | chr4.2:9558179-9558198 | MS.gene58115:CDS | 35.0% |
| ! | ATGAACCTTGTTTGCAGAAT+AGG | + | chr4.2:9557914-9557933 | MS.gene58115:intron | 35.0% |
| ! | CATTTACTCTAAAGAGGTAG+TGG | + | chr4.2:9560021-9560040 | MS.gene58115:intron | 35.0% |
| ! | GGCTTTTTGCAAAAAGATGA+CGG | + | chr4.2:9557788-9557807 | MS.gene58115:intron | 35.0% |
| ! | TAGGCATCGTAGTGATTATT+TGG | + | chr4.2:9561263-9561282 | MS.gene58115:intron | 35.0% |
| ! | TATTTTCCGTGATCTGTGAT+TGG | + | chr4.2:9557877-9557896 | MS.gene58115:intron | 35.0% |
| ! | TCAAGGTTTGCTTATGATGT+TGG | + | chr4.2:9556963-9556982 | MS.gene58115:intron | 35.0% |
| ! | TGACTTGTGATTTCCATGAA+TGG | + | chr4.2:9559354-9559373 | MS.gene58115:intron | 35.0% |
| ! | TGGGTTGAGCTTTATATTTC+AGG | + | chr4.2:9560592-9560611 | MS.gene58115:intron | 35.0% |
| !! | AGAGGTAGTGGATTTGTATT+CGG | + | chr4.2:9560033-9560052 | MS.gene58115:intron | 35.0% |
| !! | CGAGTTTTGTGAATTATCCT+TGG | + | chr4.2:9557663-9557682 | MS.gene58115:intron | 35.0% |
| !! | TAACTTCTAAGGCTCTACTT+AGG | - | chr4.2:9560093-9560112 | None:intergenic | 35.0% |
| !!! | TTGGGTGCTATTCTCATTTT+TGG | + | chr4.2:9560544-9560563 | MS.gene58115:intron | 35.0% |
| AAAAACTCGTGCGTGAGATA+AGG | + | chr4.2:9560188-9560207 | MS.gene58115:intron | 40.0% | |
| AAATGTTGGACCGTCAAATG+TGG | + | chr4.2:9557039-9557058 | MS.gene58115:intron | 40.0% | |
| AACACAACATTCATGGACCT+AGG | + | chr4.2:9558897-9558916 | MS.gene58115:intron | 40.0% | |
| AACCCACTCTCAAAAGATAG+GGG | - | chr4.2:9559946-9559965 | None:intergenic | 40.0% | |
| AAGAAACCGACCCATGTTAT+TGG | + | chr4.2:9560664-9560683 | MS.gene58115:CDS | 40.0% | |
| AAGAAAGGCTGAGATAGACT+TGG | + | chr4.2:9560766-9560785 | MS.gene58115:CDS | 40.0% | |
| AAGATAGGGGATGTAAAGAC+AGG | - | chr4.2:9559933-9559952 | None:intergenic | 40.0% | |
| AAGCAATTATGGTGTACGGA+TGG | - | chr4.2:9559175-9559194 | None:intergenic | 40.0% | |
| AAGCATACTAGCAAGGAAAC+TGG | - | chr4.2:9558020-9558039 | None:intergenic | 40.0% | |
| AATCACAAGTCACAGTAACC+AGG | - | chr4.2:9559346-9559365 | None:intergenic | 40.0% | |
| AATGTTGTGTTTCCGAGGAT+TGG | - | chr4.2:9558888-9558907 | None:intergenic | 40.0% | |
| ACACATGAATAGAAGGCAAG+CGG | + | chr4.2:9558823-9558842 | MS.gene58115:intron | 40.0% | |
| ACAGAAATGGTCATCAGAAG+AGG | + | chr4.2:9556832-9556851 | MS.gene58115:CDS | 40.0% | |
| ACCCAAGCATATTCAGATAG+AGG | + | chr4.2:9560641-9560660 | MS.gene58115:CDS | 40.0% | |
| ACCCCTGTCAGATTTAATAG+AGG | - | chr4.2:9560705-9560724 | None:intergenic | 40.0% | |
| AGAACACGCTTTCTCATGTT+TGG | + | chr4.2:9559034-9559053 | MS.gene58115:intron | 40.0% | |
| AGAACCCACTCTCAAAAGAT+AGG | - | chr4.2:9559948-9559967 | None:intergenic | 40.0% | |
| AGCAATTATGGTGTACGGAT+GGG | - | chr4.2:9559174-9559193 | None:intergenic | 40.0% | |
| AGTAACGAGATTTACAGCCA+CGG | - | chr4.2:9557205-9557224 | None:intergenic | 40.0% | |
| ATAGATCGCATTCTACCACA+AGG | - | chr4.2:9559419-9559438 | None:intergenic | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | - | chr4.2:9558917-9558936 | None:intergenic | 40.0% | |
| ATCACCACTTGTGGGATTAA+GGG | - | chr4.2:9559114-9559133 | None:intergenic | 40.0% | |
| ATCGACCGTAATATCCCTAT+TGG | + | chr4.2:9557599-9557618 | MS.gene58115:intron | 40.0% | |
| ATTAGGCAAGCATACTAGCA+AGG | - | chr4.2:9558027-9558046 | None:intergenic | 40.0% | |
| CAAAACTCGATTCCACCAAA+CGG | - | chr4.2:9557652-9557671 | None:intergenic | 40.0% | |
| CAATGTTTGGTTATGTGGGT+TGG | + | chr4.2:9557066-9557085 | MS.gene58115:intron | 40.0% | |
| CAATTCTACGACTGCAAACA+AGG | - | chr4.2:9558671-9558690 | None:intergenic | 40.0% | |
| CACAGTAACCAGGTTTCAAA+AGG | - | chr4.2:9559336-9559355 | None:intergenic | 40.0% | |
| CACTTTACAACCCTATCCTA+TGG | + | chr4.2:9559839-9559858 | MS.gene58115:intron | 40.0% | |
| CAGATTGGACAACCTTATAG+TGG | + | chr4.2:9558155-9558174 | MS.gene58115:intron | 40.0% | |
| CATTTATTACTCCAGTGCAC+AGG | - | chr4.2:9558610-9558629 | None:intergenic | 40.0% | |
| CCCTTTGAACTCTATGTAGA+AGG | + | chr4.2:9558943-9558962 | MS.gene58115:intron | 40.0% | |
| CCTAATTGAAAGACAATCGC+CGG | - | chr4.2:9557963-9557982 | None:intergenic | 40.0% | |
| CCTACATTAACCCATAGGAT+AGG | - | chr4.2:9559853-9559872 | None:intergenic | 40.0% | |
| CCTATGACCTCCATATTACA+AGG | - | chr4.2:9558516-9558535 | None:intergenic | 40.0% | |
| CCTTGAGATCGATATTTGAG+CGG | - | chr4.2:9556949-9556968 | None:intergenic | 40.0% | |
| CCTTGTAATATGGAGGTCAT+AGG | + | chr4.2:9558513-9558532 | MS.gene58115:intron | 40.0% | |
| CGGCGATTGTCTTTCAATTA+GGG | + | chr4.2:9557961-9557980 | MS.gene58115:intron | 40.0% | |
| CTATCTGAATATGCTTGGGT+AGG | - | chr4.2:9560641-9560660 | None:intergenic | 40.0% | |
| CTATTAAATCTGACAGGGGT+GGG | + | chr4.2:9560705-9560724 | MS.gene58115:CDS | 40.0% | |
| GAACCCACTCTCAAAAGATA+GGG | - | chr4.2:9559947-9559966 | None:intergenic | 40.0% | |
| GATCTTCAAAAGATATCCGG+GGG | + | chr4.2:9557705-9557724 | MS.gene58115:intron | 40.0% | |
| GCCTCTATTAAATCTGACAG+GGG | + | chr4.2:9560701-9560720 | MS.gene58115:CDS | 40.0% | |
| GGAAAGGTCTATCAAAAGGT+TGG | + | chr4.2:9557296-9557315 | MS.gene58115:intron | 40.0% | |
| GGTTTATTTGGTCGAAATGC+GGG | + | chr4.2:9557620-9557639 | MS.gene58115:intron | 40.0% | |
| GTGACTACCTTGTAATATGG+AGG | + | chr4.2:9558506-9558525 | MS.gene58115:intron | 40.0% | |
| TAGAGCCTTAGAAGTTAGCT+TGG | + | chr4.2:9560096-9560115 | MS.gene58115:intron | 40.0% | |
| TAGATCGCATTCTACCACAA+GGG | - | chr4.2:9559418-9559437 | None:intergenic | 40.0% | |
| TATCACCACTTGTGGGATTA+AGG | - | chr4.2:9559115-9559134 | None:intergenic | 40.0% | |
| TATGCTGGAAATTAAGGGTC+CGG | + | chr4.2:9557275-9557294 | MS.gene58115:CDS | 40.0% | |
| TATTAAATCTGACAGGGGTG+GGG | + | chr4.2:9560706-9560725 | MS.gene58115:CDS | 40.0% | |
| TCTATTAAATCTGACAGGGG+TGG | + | chr4.2:9560704-9560723 | MS.gene58115:CDS | 40.0% | |
| TCTCACATTGGCCAGAAATA+AGG | + | chr4.2:9560067-9560086 | MS.gene58115:intron | 40.0% | |
| TGGATGGAAAAACCAATCCT+CGG | + | chr4.2:9558873-9558892 | MS.gene58115:intron | 40.0% | |
| TTCACTTGTCTTTCAGCACA+TGG | - | chr4.2:9559263-9559282 | None:intergenic | 40.0% | |
| TTGAGCGGATATACAACACA+TGG | - | chr4.2:9556934-9556953 | None:intergenic | 40.0% | |
| TTTGCACAAAGAAGCTTGAG+TGG | + | chr4.2:9559287-9559306 | MS.gene58115:intron | 40.0% | |
| ! | AATAAAAAGGGTGCGTCATC+AGG | + | chr4.2:9557158-9557177 | MS.gene58115:CDS | 40.0% |
| ! | ATTAAGGGTTGGGGCTTTTA+TGG | - | chr4.2:9559099-9559118 | None:intergenic | 40.0% |
| ! | CCTATCCTATGGGTTAATGT+AGG | + | chr4.2:9559850-9559869 | MS.gene58115:intron | 40.0% |
| ! | GAAAAAAGTGGCTTGTAAGG+AGG | - | chr4.2:9560246-9560265 | None:intergenic | 40.0% |
| ! | TCATGTTTGGCCACTTTGTT+TGG | + | chr4.2:9559047-9559066 | MS.gene58115:intron | 40.0% |
| !! | AAACTAGCTCTGCTTCATGA+TGG | - | chr4.2:9559217-9559236 | None:intergenic | 40.0% |
| !! | ATCCCCTATCTTTTGAGAGT+GGG | + | chr4.2:9559941-9559960 | MS.gene58115:intron | 40.0% |
| !! | CGGAAAGTGTCAAAAGCAAA+TGG | + | chr4.2:9558990-9559009 | MS.gene58115:intron | 40.0% |
| !! | CTCTACTTAGGCCTTATTTC+TGG | - | chr4.2:9560081-9560100 | None:intergenic | 40.0% |
| !! | TGTGGGTTGGATAGGATAAA+TGG | + | chr4.2:9557079-9557098 | MS.gene58115:intron | 40.0% |
| !! | TTTGGTTATGTGGGTTGGAT+AGG | + | chr4.2:9557071-9557090 | MS.gene58115:intron | 40.0% |
| !!! | TGATCGGTTTTGAGAAGAGA+CGG | - | chr4.2:9561184-9561203 | None:intergenic | 40.0% |
| AAAGCTGGAGTTGTGAAGCA+TGG | + | chr4.2:9556866-9556885 | MS.gene58115:CDS | 45.0% | |
| AACCGACCCATGTTATTGGA+AGG | + | chr4.2:9560668-9560687 | MS.gene58115:CDS | 45.0% | |
| AAGACGAGACTTTACCACAG+TGG | + | chr4.2:9557762-9557781 | MS.gene58115:intron | 45.0% | |
| AAGGCAAATGGATCATCCTC+CGG | + | chr4.2:9557117-9557136 | MS.gene58115:CDS | 45.0% | |
| ACACTGCTGAACTTGGTTCA+TGG | - | chr4.2:9560145-9560164 | None:intergenic | 45.0% | |
| ACCGACCCATGTTATTGGAA+GGG | + | chr4.2:9560669-9560688 | MS.gene58115:CDS | 45.0% | |
| ACTTGTGGGATTAAGGGTTG+GGG | - | chr4.2:9559108-9559127 | None:intergenic | 45.0% | |
| AGAAGCTGAAGAGGCAACAA+AGG | + | chr4.2:9560874-9560893 | MS.gene58115:CDS | 45.0% | |
| AGATCGCATTCTACCACAAG+GGG | - | chr4.2:9559417-9559436 | None:intergenic | 45.0% | |
| AGGAGGAAAACATGCATGTG+TGG | - | chr4.2:9559150-9559169 | None:intergenic | 45.0% | |
| ATGGTCATCAGAAGAGGAAG+CGG | + | chr4.2:9556838-9556857 | MS.gene58115:CDS | 45.0% | |
| ATTAAATCTGACAGGGGTGG+GGG | + | chr4.2:9560707-9560726 | MS.gene58115:CDS | 45.0% | |
| ATTATGGTGTACGGATGGGT+AGG | - | chr4.2:9559170-9559189 | None:intergenic | 45.0% | |
| CACATGAATAGAAGGCAAGC+GGG | + | chr4.2:9558824-9558843 | MS.gene58115:intron | 45.0% | |
| CACTTGTGGGATTAAGGGTT+GGG | - | chr4.2:9559109-9559128 | None:intergenic | 45.0% | |
| CCATGAATGTTGTGTTTCCG+AGG | - | chr4.2:9558893-9558912 | None:intergenic | 45.0% | |
| CCGCTCAAATATCGATCTCA+AGG | + | chr4.2:9556946-9556965 | MS.gene58115:CDS | 45.0% | |
| CCGGCGATTGTCTTTCAATT+AGG | + | chr4.2:9557960-9557979 | MS.gene58115:intron | 45.0% | |
| CCTCGGAAACACAACATTCA+TGG | + | chr4.2:9558890-9558909 | MS.gene58115:intron | 45.0% | |
| CTCCACCAAGCTAACTTCTA+AGG | - | chr4.2:9560104-9560123 | None:intergenic | 45.0% | |
| CTGGATGATCTTAACACGCT+TGG | - | chr4.2:9558001-9558020 | None:intergenic | 45.0% | |
| GAACCAAGTTCAGCAGTGTT+GGG | + | chr4.2:9560146-9560165 | MS.gene58115:intron | 45.0% | |
| GATATCCCCATTTGTAGCAG+AGG | + | chr4.2:9559903-9559922 | MS.gene58115:intron | 45.0% | |
| GGCTGAGATAGACTTGGAAT+TGG | + | chr4.2:9560772-9560791 | MS.gene58115:CDS | 45.0% | |
| GTCCGGAAAGGTCTATCAAA+AGG | + | chr4.2:9557292-9557311 | MS.gene58115:CDS | 45.0% | |
| GTGTTGCCAATCACAGATCA+CGG | - | chr4.2:9557886-9557905 | None:intergenic | 45.0% | |
| TAAGCTGTCAGCAAAACTGG+TGG | + | chr4.2:9559657-9559676 | MS.gene58115:CDS | 45.0% | |
| TCCCTTCCAATAACATGGGT+CGG | - | chr4.2:9560673-9560692 | None:intergenic | 45.0% | |
| TGAACCAAGTTCAGCAGTGT+TGG | + | chr4.2:9560145-9560164 | MS.gene58115:intron | 45.0% | |
| TGAAGCATGGCGTAGGTAAA+TGG | + | chr4.2:9556879-9556898 | MS.gene58115:CDS | 45.0% | |
| TGCCTCCCTTCCAATAACAT+GGG | - | chr4.2:9560677-9560696 | None:intergenic | 45.0% | |
| TGGAAATTAAGGGTCCGGAA+AGG | + | chr4.2:9557280-9557299 | MS.gene58115:CDS | 45.0% | |
| TGTAGAAGGTTAACACCCTC+TGG | + | chr4.2:9558957-9558976 | MS.gene58115:intron | 45.0% | |
| TTCTGGCCAATGTGAGACTT+TGG | - | chr4.2:9560064-9560083 | None:intergenic | 45.0% | |
| ! | ACTGAGGTATCACCACTTGT+GGG | - | chr4.2:9559122-9559141 | None:intergenic | 45.0% |
| ! | AGCCTTAGAAGTTAGCTTGG+TGG | + | chr4.2:9560099-9560118 | MS.gene58115:intron | 45.0% |
| ! | CTGGTGGATCTTGTATCTAG+TGG | + | chr4.2:9559673-9559692 | MS.gene58115:CDS | 45.0% |
| ! | GTTGTAAAGTGCACCGATAC+TGG | - | chr4.2:9559830-9559849 | None:intergenic | 45.0% |
| ! | TCTAGCTTGAATGAGGTCGA+TGG | + | chr4.2:9558186-9558205 | MS.gene58115:CDS | 45.0% |
| ! | TTTGTTTGGCGCGGCTTTTA+GGG | + | chr4.2:9559061-9559080 | MS.gene58115:intron | 45.0% |
| !! | CATCCCCTATCTTTTGAGAG+TGG | + | chr4.2:9559940-9559959 | MS.gene58115:intron | 45.0% |
| !! | TGGGTGCTACTAGACAGAAA+TGG | + | chr4.2:9556819-9556838 | MS.gene58115:CDS | 45.0% |
| !!! | ACTCGAAGCCTTTTGAAACC+TGG | + | chr4.2:9559325-9559344 | MS.gene58115:intron | 45.0% |
| !!! | GATCGGTTTTGAGAAGAGAC+GGG | - | chr4.2:9561183-9561202 | None:intergenic | 45.0% |
| AAAAGCCGCGCCAAACAAAG+TGG | - | chr4.2:9559060-9559079 | None:intergenic | 50.0% | |
| AAATGCGGGAAAGCTCCGTT+TGG | + | chr4.2:9557634-9557653 | MS.gene58115:intron | 50.0% | |
| ACACCCAACACTGCTGAACT+TGG | - | chr4.2:9560152-9560171 | None:intergenic | 50.0% | |
| AGAAGCAGAAGCTGATGCAG+CGG | + | chr4.2:9560910-9560929 | MS.gene58115:CDS | 50.0% | |
| AGCTGAAGAGGCAACAAAGG+AGG | + | chr4.2:9560877-9560896 | MS.gene58115:CDS | 50.0% | |
| AGGCAAATGGATCATCCTCC+GGG | + | chr4.2:9557118-9557137 | MS.gene58115:CDS | 50.0% | |
| AGGCCAACCTCTGCTACAAA+TGG | - | chr4.2:9559913-9559932 | None:intergenic | 50.0% | |
| CACTAGTCACAATGAACCCC+CGG | - | chr4.2:9557724-9557743 | None:intergenic | 50.0% | |
| CCAACCCTTAATCCCACAAG+TGG | + | chr4.2:9559107-9559126 | MS.gene58115:intron | 50.0% | |
| CCACTTGTGGGATTAAGGGT+TGG | - | chr4.2:9559110-9559129 | None:intergenic | 50.0% | |
| CGAACCTTGGCACATTGGTA+AGG | + | chr4.2:9558484-9558503 | MS.gene58115:intron | 50.0% | |
| CTGCCTCCCTTCCAATAACA+TGG | - | chr4.2:9560678-9560697 | None:intergenic | 50.0% | |
| CTTCATCTGCAAGCGAACCT+TGG | + | chr4.2:9558471-9558490 | MS.gene58115:intron | 50.0% | |
| GACCCATGTTATTGGAAGGG+AGG | + | chr4.2:9560672-9560691 | MS.gene58115:CDS | 50.0% | |
| GAGACTTTACCACAGTGGAG+CGG | + | chr4.2:9557767-9557786 | MS.gene58115:intron | 50.0% | |
| GCCAACCTCTGCTACAAATG+GGG | - | chr4.2:9559911-9559930 | None:intergenic | 50.0% | |
| GCTTCATGATGGCATCGTCT+TGG | - | chr4.2:9559206-9559225 | None:intergenic | 50.0% | |
| GGCCAACCTCTGCTACAAAT+GGG | - | chr4.2:9559912-9559931 | None:intergenic | 50.0% | |
| GTAGAACCAATACTGCGCAC+CGG | + | chr4.2:9559621-9559640 | MS.gene58115:intron | 50.0% | |
| GTCACCTTACCAATGTGCCA+AGG | - | chr4.2:9558491-9558510 | None:intergenic | 50.0% | |
| TCCCCATTTGTAGCAGAGGT+TGG | + | chr4.2:9559907-9559926 | MS.gene58115:intron | 50.0% | |
| TGCATGTGTGGACTTGACTG+AGG | - | chr4.2:9559138-9559157 | None:intergenic | 50.0% | |
| ! | ACAGCTGCTGGTTGTGAGTT+TGG | + | chr4.2:9560367-9560386 | MS.gene58115:intron | 50.0% |
| ! | AGGGTTGGGGCTTTTATGGT+AGG | - | chr4.2:9559095-9559114 | None:intergenic | 50.0% |
| ! | AGTGCACCGATACTGGTGAT+TGG | - | chr4.2:9559823-9559842 | None:intergenic | 50.0% |
| ! | CAGCTGCTGGTTGTGAGTTT+GGG | + | chr4.2:9560368-9560387 | MS.gene58115:intron | 50.0% |
| ! | CGCTGCTAAGCCTTTTTGGA+TGG | + | chr4.2:9558857-9558876 | MS.gene58115:intron | 50.0% |
| ! | GACTGAGGTATCACCACTTG+TGG | - | chr4.2:9559123-9559142 | None:intergenic | 50.0% |
| ! | GGGGCATTTGAAGCACCAAA+GGG | - | chr4.2:9559398-9559417 | None:intergenic | 50.0% |
| ! | TGCTGCTTAGATACAGCTGC+TGG | + | chr4.2:9560355-9560374 | MS.gene58115:intron | 50.0% |
| ! | TTTGGCCACTTTGTTTGGCG+CGG | + | chr4.2:9559052-9559071 | MS.gene58115:intron | 50.0% |
| !! | AGGGGCATTTGAAGCACCAA+AGG | - | chr4.2:9559399-9559418 | None:intergenic | 50.0% |
| !! | CTTTGTTTGGCGCGGCTTTT+AGG | + | chr4.2:9559060-9559079 | MS.gene58115:intron | 50.0% |
| AATCTGCCGGTGCGCAGTAT+TGG | - | chr4.2:9559630-9559649 | None:intergenic | 55.0% | |
| AGAGGCAACAAAGGAGGCAG+AGG | + | chr4.2:9560883-9560902 | MS.gene58115:CDS | 55.0% | |
| ATGGTGTACGGATGGGTAGG+AGG | - | chr4.2:9559167-9559186 | None:intergenic | 55.0% | |
| CAAGCGAAGAGGCTGTTGCA+AGG | - | chr4.2:9558546-9558565 | None:intergenic | 55.0% | |
| CTCTTCAGCTTCTGCCATGG+CGG | - | chr4.2:9560867-9560886 | None:intergenic | 55.0% | |
| GCAAGCGAACCTTGGCACAT+TGG | + | chr4.2:9558479-9558498 | MS.gene58115:intron | 55.0% | |
| GGAGTTGTGAAGCATGGCGT+AGG | + | chr4.2:9556872-9556891 | MS.gene58115:CDS | 55.0% | |
| GGCAAATGGATCATCCTCCG+GGG | + | chr4.2:9557119-9557138 | MS.gene58115:CDS | 55.0% | |
| GGTGCTTCAAATGCCCCTTG+TGG | + | chr4.2:9559401-9559420 | MS.gene58115:intron | 55.0% | |
| GGTTAACACCCTCTGGTGCT+AGG | + | chr4.2:9558964-9558983 | MS.gene58115:intron | 55.0% | |
| TGCAAAAAGCCGCTCCACTG+TGG | - | chr4.2:9557779-9557798 | None:intergenic | 55.0% | |
| TGCAACAGCCTCTTCGCTTG+CGG | + | chr4.2:9558546-9558565 | MS.gene58115:intron | 55.0% | |
| TGCCTCTTCAGCTTCTGCCA+TGG | - | chr4.2:9560870-9560889 | None:intergenic | 55.0% | |
| TGCTAGCTGAGAGTTGTCCC+CGG | - | chr4.2:9557139-9557158 | None:intergenic | 55.0% | |
| TTCCGCTTCCTAGCACCAGA+GGG | - | chr4.2:9558975-9558994 | None:intergenic | 55.0% | |
| TTTCCGCTTCCTAGCACCAG+AGG | - | chr4.2:9558976-9558995 | None:intergenic | 55.0% | |
| ! | GCTGCGCTGCTAAGCCTTTT+TGG | + | chr4.2:9558853-9558872 | MS.gene58115:intron | 55.0% |
| ACGGAGTCGTCACGCTGTTC+TGG | - | chr4.2:9557186-9557205 | None:intergenic | 60.0% | |
| AGAACAGCGTGACGACTCCG+TGG | + | chr4.2:9557185-9557204 | MS.gene58115:CDS | 60.0% | |
| CCTCTTCGCTTGCGGGTGTA+AGG | + | chr4.2:9558554-9558573 | MS.gene58115:intron | 60.0% | |
| CCTTACACCCGCAAGCGAAG+AGG | - | chr4.2:9558557-9558576 | None:intergenic | 60.0% | |
| CGCCATGGCAGAAGCTGAAG+AGG | + | chr4.2:9560865-9560884 | MS.gene58115:CDS | 60.0% | |
| GAGGAAGCGGCTCTCAAAGC+TGG | + | chr4.2:9556851-9556870 | MS.gene58115:CDS | 60.0% | |
| GCAACAGCCTCTTCGCTTGC+GGG | + | chr4.2:9558547-9558566 | MS.gene58115:intron | 60.0% | |
| TAGCTGAGAGTTGTCCCCGG+AGG | - | chr4.2:9557136-9557155 | None:intergenic | 60.0% | |
| TGCGGGAAAGCTCCGTTTGG+TGG | + | chr4.2:9557637-9557656 | MS.gene58115:intron | 60.0% | |
| TGCTGAAGCAGAAGCCGCCA+TGG | + | chr4.2:9560850-9560869 | MS.gene58115:CDS | 60.0% | |
| ! | CACCCTCTGGTGCTAGGAAG+CGG | + | chr4.2:9558970-9558989 | MS.gene58115:intron | 60.0% |
| ! | GGCTTTGTGCCCTCACAAGC+AGG | - | chr4.2:9561162-9561181 | None:intergenic | 60.0% |
| CCAGTGCACAGGCTCCCACT+AGG | - | chr4.2:9558599-9558618 | None:intergenic | 65.0% | |
| CCTAGTGGGAGCCTGTGCAC+TGG | + | chr4.2:9558596-9558615 | MS.gene58115:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 9556818 | 9561322 | 9556818 | ID=MS.gene58115 |
| chr4.2 | mRNA | 9556818 | 9561322 | 9556818 | ID=MS.gene58115.t1;Parent=MS.gene58115 |
| chr4.2 | exon | 9556818 | 9556967 | 9556818 | ID=MS.gene58115.t1.exon1;Parent=MS.gene58115.t1 |
| chr4.2 | CDS | 9556818 | 9556967 | 9556818 | ID=cds.MS.gene58115.t1;Parent=MS.gene58115.t1 |
| chr4.2 | exon | 9557093 | 9557313 | 9557093 | ID=MS.gene58115.t1.exon2;Parent=MS.gene58115.t1 |
| chr4.2 | CDS | 9557093 | 9557313 | 9557093 | ID=cds.MS.gene58115.t1;Parent=MS.gene58115.t1 |
| chr4.2 | exon | 9558158 | 9558242 | 9558158 | ID=MS.gene58115.t1.exon3;Parent=MS.gene58115.t1 |
| chr4.2 | CDS | 9558158 | 9558242 | 9558158 | ID=cds.MS.gene58115.t1;Parent=MS.gene58115.t1 |
| chr4.2 | exon | 9559625 | 9559708 | 9559625 | ID=MS.gene58115.t1.exon4;Parent=MS.gene58115.t1 |
| chr4.2 | CDS | 9559625 | 9559708 | 9559625 | ID=cds.MS.gene58115.t1;Parent=MS.gene58115.t1 |
| chr4.2 | exon | 9560614 | 9560975 | 9560614 | ID=MS.gene58115.t1.exon5;Parent=MS.gene58115.t1 |
| chr4.2 | CDS | 9560614 | 9560975 | 9560614 | ID=cds.MS.gene58115.t1;Parent=MS.gene58115.t1 |
| chr4.2 | exon | 9561319 | 9561322 | 9561319 | ID=MS.gene58115.t1.exon6;Parent=MS.gene58115.t1 |
| chr4.2 | CDS | 9561319 | 9561322 | 9561319 | ID=cds.MS.gene58115.t1;Parent=MS.gene58115.t1 |
| Gene Sequence |
| Protein sequence |
