Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58381.t1 | GAU29658.1 | 96.5 | 86 | 3 | 0 | 85 | 170 | 164 | 249 | 9.20E-35 | 156.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58381.t1 | Q5QNI5 | 91.2 | 80 | 7 | 0 | 91 | 170 | 187 | 266 | 1.8e-31 | 137.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58381.t1 | A0A2Z6MD16 | 96.5 | 86 | 3 | 0 | 85 | 170 | 164 | 249 | 6.7e-35 | 156.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene58381.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58381.t1 | MTR_2g078370 | 95.918 | 98 | 3 | 1 | 1 | 98 | 118 | 214 | 4.97e-52 | 165 |
MS.gene58381.t1 | MTR_2g090900 | 56.395 | 172 | 68 | 3 | 1 | 170 | 103 | 269 | 9.60e-49 | 160 |
MS.gene58381.t1 | MTR_2g090900 | 56.395 | 172 | 68 | 3 | 1 | 170 | 103 | 269 | 1.16e-48 | 160 |
MS.gene58381.t1 | MTR_4g079500 | 72.321 | 112 | 26 | 2 | 64 | 170 | 161 | 272 | 1.56e-47 | 157 |
MS.gene58381.t1 | MTR_8g088650 | 53.165 | 79 | 32 | 1 | 91 | 169 | 233 | 306 | 9.12e-19 | 82.4 |
MS.gene58381.t1 | MTR_4g072090 | 48.780 | 82 | 42 | 0 | 90 | 171 | 358 | 439 | 3.33e-18 | 81.3 |
MS.gene58381.t1 | MTR_4g072090 | 49.383 | 81 | 41 | 0 | 90 | 170 | 358 | 438 | 4.11e-18 | 80.9 |
MS.gene58381.t1 | MTR_2g099050 | 46.341 | 82 | 44 | 0 | 90 | 171 | 219 | 300 | 6.20e-18 | 80.1 |
MS.gene58381.t1 | MTR_5g075390 | 48.148 | 81 | 42 | 0 | 91 | 171 | 158 | 238 | 1.14e-17 | 79.0 |
MS.gene58381.t1 | MTR_3g467120 | 45.122 | 82 | 45 | 0 | 90 | 171 | 175 | 256 | 3.48e-17 | 77.8 |
MS.gene58381.t1 | MTR_6g034945 | 50.667 | 75 | 37 | 0 | 90 | 164 | 149 | 223 | 2.14e-16 | 75.1 |
MS.gene58381.t1 | MTR_3g094020 | 46.667 | 75 | 40 | 0 | 90 | 164 | 106 | 180 | 4.70e-15 | 71.6 |
MS.gene58381.t1 | MTR_3g005230 | 47.826 | 69 | 36 | 0 | 101 | 169 | 136 | 204 | 1.93e-14 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58381.t1 | AT3G58120 | 55.866 | 179 | 39 | 6 | 15 | 170 | 119 | 280 | 4.09e-48 | 157 |
MS.gene58381.t1 | AT3G58120 | 55.556 | 180 | 40 | 6 | 15 | 171 | 119 | 281 | 1.04e-47 | 158 |
MS.gene58381.t1 | AT2G42380 | 74.528 | 106 | 19 | 2 | 65 | 170 | 167 | 264 | 2.45e-46 | 152 |
MS.gene58381.t1 | AT2G42380 | 74.528 | 106 | 19 | 2 | 65 | 170 | 167 | 264 | 6.07e-46 | 153 |
MS.gene58381.t1 | AT2G42380 | 65.094 | 106 | 18 | 3 | 65 | 170 | 167 | 253 | 5.87e-36 | 127 |
MS.gene58381.t1 | AT2G42380 | 62.857 | 70 | 18 | 2 | 65 | 134 | 167 | 228 | 2.52e-19 | 82.0 |
MS.gene58381.t1 | AT2G42380 | 62.857 | 70 | 18 | 2 | 65 | 134 | 167 | 228 | 2.52e-19 | 82.0 |
MS.gene58381.t1 | AT4G38900 | 50.000 | 82 | 41 | 0 | 90 | 171 | 392 | 473 | 1.65e-18 | 82.0 |
MS.gene58381.t1 | AT4G38900 | 50.000 | 82 | 41 | 0 | 90 | 171 | 392 | 473 | 1.65e-18 | 82.0 |
MS.gene58381.t1 | AT1G58110 | 53.521 | 71 | 33 | 0 | 101 | 171 | 238 | 308 | 5.30e-18 | 80.1 |
MS.gene58381.t1 | AT1G58110 | 53.521 | 71 | 33 | 0 | 101 | 171 | 238 | 308 | 5.30e-18 | 80.1 |
MS.gene58381.t1 | AT1G06070 | 46.341 | 82 | 44 | 0 | 90 | 171 | 208 | 289 | 5.73e-18 | 80.5 |
MS.gene58381.t1 | AT2G31370 | 48.148 | 81 | 42 | 0 | 90 | 170 | 199 | 279 | 1.01e-17 | 79.3 |
MS.gene58381.t1 | AT2G31370 | 48.148 | 81 | 42 | 0 | 90 | 170 | 199 | 279 | 1.44e-17 | 79.3 |
MS.gene58381.t1 | AT2G31370 | 48.148 | 81 | 42 | 0 | 90 | 170 | 199 | 279 | 1.44e-17 | 79.3 |
MS.gene58381.t1 | AT2G31370 | 48.148 | 81 | 42 | 0 | 90 | 170 | 199 | 279 | 1.44e-17 | 79.3 |
MS.gene58381.t1 | AT2G31370 | 48.148 | 81 | 42 | 0 | 90 | 170 | 199 | 279 | 1.44e-17 | 79.3 |
MS.gene58381.t1 | AT2G31370 | 48.148 | 81 | 42 | 0 | 90 | 170 | 199 | 279 | 1.44e-17 | 79.3 |
MS.gene58381.t1 | AT2G31370 | 48.148 | 81 | 42 | 0 | 90 | 170 | 199 | 279 | 1.44e-17 | 79.3 |
MS.gene58381.t1 | AT1G43700 | 47.561 | 82 | 43 | 0 | 90 | 171 | 192 | 273 | 1.50e-17 | 78.6 |
MS.gene58381.t1 | AT2G40620 | 40.566 | 106 | 63 | 0 | 66 | 171 | 122 | 227 | 1.66e-17 | 79.0 |
MS.gene58381.t1 | AT2G21230 | 49.383 | 81 | 41 | 0 | 90 | 170 | 368 | 448 | 2.45e-17 | 78.6 |
MS.gene58381.t1 | AT2G21230 | 48.780 | 82 | 42 | 0 | 90 | 171 | 368 | 449 | 3.12e-17 | 78.6 |
MS.gene58381.t1 | AT2G21230 | 48.780 | 82 | 42 | 0 | 90 | 171 | 368 | 449 | 3.12e-17 | 78.6 |
MS.gene58381.t1 | AT2G21230 | 49.383 | 81 | 41 | 0 | 90 | 170 | 368 | 448 | 3.46e-17 | 78.6 |
MS.gene58381.t1 | AT1G06850 | 51.351 | 74 | 36 | 0 | 91 | 164 | 147 | 220 | 2.19e-16 | 75.5 |
MS.gene58381.t1 | AT5G04840 | 55.714 | 70 | 31 | 0 | 101 | 170 | 177 | 246 | 2.23e-16 | 74.3 |
MS.gene58381.t1 | AT4G38900 | 46.591 | 88 | 41 | 1 | 90 | 171 | 392 | 479 | 3.31e-16 | 75.5 |
MS.gene58381.t1 | AT5G04840 | 55.714 | 70 | 31 | 0 | 101 | 170 | 177 | 246 | 4.85e-16 | 74.3 |
MS.gene58381.t1 | AT1G35490 | 40.741 | 81 | 43 | 1 | 91 | 171 | 170 | 245 | 6.34e-14 | 68.2 |
MS.gene58381.t1 | AT1G35490 | 40.741 | 81 | 43 | 1 | 91 | 171 | 170 | 245 | 6.34e-14 | 68.2 |
MS.gene58381.t1 | AT1G06850 | 71.111 | 45 | 13 | 0 | 91 | 135 | 147 | 191 | 1.28e-13 | 66.6 |
Find 44 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTGCAATCCGTTGCTTTA+TGG | 0.114715 | 2.3:-19410355 | None:intergenic |
CTTCATTGTTATTGCTATTT+TGG | 0.139041 | 2.3:-19408980 | None:intergenic |
TTGTATATATACCAGAATTT+TGG | 0.218450 | 2.3:+19410031 | MS.gene58381:intron |
TTCAGTGCAGGTGATGTTTC+CGG | 0.261998 | 2.3:-19409138 | None:intergenic |
GTCACCACGAGTTGCATTCT+TGG | 0.266371 | 2.3:+19410296 | MS.gene58381:CDS |
AAGGAGCGTAACATCTTTGC+AGG | 0.362831 | 2.3:+19410115 | MS.gene58381:CDS |
ATGTTCTCTGACAATGTTGC+CGG | 0.381694 | 2.3:+19408897 | MS.gene58381:CDS |
TCATCAACGGCTTCATCCTT+AGG | 0.449640 | 2.3:-19409068 | None:intergenic |
CATCTTTGAAAAGCTTGTCC+TGG | 0.451454 | 2.3:-19410383 | None:intergenic |
AAAGCAACGGATTGCAGCAT+TGG | 0.460058 | 2.3:+19410359 | MS.gene58381:CDS |
GCATCCATCACCATTGCCAT+TGG | 0.467088 | 2.3:-19409008 | None:intergenic |
ATCTTTGAAAAGCTTGTCCT+GGG | 0.477116 | 2.3:-19410382 | None:intergenic |
GGCAATCAGCTCAGAGGTCA+AGG | 0.479409 | 2.3:+19410060 | MS.gene58381:CDS |
ATCTACAACGGTTTCAGTGC+AGG | 0.490753 | 2.3:-19409150 | None:intergenic |
ACGGATTGCAGCATTGGCCC+AGG | 0.491712 | 2.3:+19410365 | MS.gene58381:CDS |
TAGATCCCAAGAGGGTCAAA+AGG | 0.498983 | 2.3:+19409168 | MS.gene58381:CDS |
AATACATTTCTGAGCTTGAA+AGG | 0.505039 | 2.3:+19410096 | MS.gene58381:CDS |
CAGTAAGAATCATACGTTGA+TGG | 0.511877 | 2.3:-19410320 | None:intergenic |
ACATGAGCCGTCGTCATCAA+CGG | 0.516208 | 2.3:-19409081 | None:intergenic |
GCGGCGGTGCCATCTTCCTC+CGG | 0.518810 | 2.3:+19409119 | MS.gene58381:CDS |
GGCAACATTGTCAGAGAACA+TGG | 0.530680 | 2.3:-19408895 | None:intergenic |
TGGTCGGAGGATGGTGACGA+TGG | 0.544700 | 2.3:-19408960 | None:intergenic |
GGTCGGAGGATGGTGACGAT+GGG | 0.544837 | 2.3:-19408959 | None:intergenic |
TCATCATGAAGTGAAGCCTA+AGG | 0.546604 | 2.3:+19409052 | MS.gene58381:CDS |
GTCGATGACAACGGCAAAGG+CGG | 0.547044 | 2.3:-19408930 | None:intergenic |
GAAACCAATGGCAATGGTGA+TGG | 0.549627 | 2.3:+19409004 | MS.gene58381:CDS |
GGAGGATGGTGACGATGGGT+TGG | 0.554167 | 2.3:-19408955 | None:intergenic |
GTGATGTTTCCGGAGGAAGA+TGG | 0.559029 | 2.3:-19409128 | None:intergenic |
TGATGAAAATAATGCTCTTG+AGG | 0.568780 | 2.3:-19409035 | None:intergenic |
GACCCTCTTGGGATCTACAA+CGG | 0.581978 | 2.3:-19409162 | None:intergenic |
CAAAGGCGGGAAAGATACGC+CGG | 0.592526 | 2.3:-19408916 | None:intergenic |
TCGATGACAACGGCAAAGGC+GGG | 0.594747 | 2.3:-19408929 | None:intergenic |
GACGTCGATGACAACGGCAA+AGG | 0.605069 | 2.3:-19408933 | None:intergenic |
TGAAGAGAAACCAATGGCAA+TGG | 0.607257 | 2.3:+19408998 | MS.gene58381:CDS |
TAACAATGAAGAGAAACCAA+TGG | 0.626582 | 2.3:+19408992 | MS.gene58381:CDS |
GCAATCAGCTCAGAGGTCAA+GGG | 0.637616 | 2.3:+19410061 | MS.gene58381:CDS |
GATGAAGCCGTTGATGACGA+CGG | 0.646934 | 2.3:+19409074 | MS.gene58381:CDS |
CTAATAGGCAATCAGCTCAG+AGG | 0.670951 | 2.3:+19410054 | MS.gene58381:CDS |
ACAACAGTGCCATAAAGCAA+CGG | 0.673543 | 2.3:+19410346 | MS.gene58381:CDS |
AAACCGTTGTAGATCCCAAG+AGG | 0.682209 | 2.3:+19409159 | MS.gene58381:CDS |
AACCGTTGTAGATCCCAAGA+GGG | 0.686614 | 2.3:+19409160 | MS.gene58381:CDS |
AGTGCAGGTGATGTTTCCGG+AGG | 0.699662 | 2.3:-19409135 | None:intergenic |
GGGTTGGACGTCGATGACAA+CGG | 0.710005 | 2.3:-19408939 | None:intergenic |
TGGTCCAAGAATGCAACTCG+TGG | 0.753629 | 2.3:-19410300 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTATCAAAACAATTTTA+TGG | - | chr2.3:19409618-19409637 | None:intergenic | 10.0% |
!! | TGAAAAATGTAAAAATGAAT+TGG | + | chr2.3:19410214-19410233 | MS.gene58381:intron | 15.0% |
!! | TTTCATATTGTATGTAAAAT+TGG | + | chr2.3:19410169-19410188 | MS.gene58381:intron | 15.0% |
!!! | GTAATTTTTGTTAATTAGAA+AGG | + | chr2.3:19410493-19410512 | MS.gene58381:intron | 15.0% |
!!! | TAGTAAATATTTGACTTTTA+TGG | + | chr2.3:19409861-19409880 | MS.gene58381:intron | 15.0% |
!! | ATTAATCAAGCTTATAAAGA+TGG | - | chr2.3:19410440-19410459 | None:intergenic | 20.0% |
!! | CTATGATATGATATAGTAAA+TGG | + | chr2.3:19409227-19409246 | MS.gene58381:intron | 20.0% |
!! | CTTAAACAAATTAATATCCA+TGG | - | chr2.3:19409668-19409687 | None:intergenic | 20.0% |
!! | TATAAAACTGAGAAATTCAT+GGG | + | chr2.3:19409488-19409507 | MS.gene58381:intron | 20.0% |
!! | TGATAATAAGCAATTAGATT+TGG | - | chr2.3:19410010-19410029 | None:intergenic | 20.0% |
!! | TTATAAAACTGAGAAATTCA+TGG | + | chr2.3:19409487-19409506 | MS.gene58381:intron | 20.0% |
!!! | AATAAATTGAAAGTTTTTGC+TGG | + | chr2.3:19409514-19409533 | MS.gene58381:intron | 20.0% |
!!! | TTGTATATATACCAGAATTT+TGG | + | chr2.3:19410031-19410050 | MS.gene58381:intron | 20.0% |
! | AAAAATTTAACGTGTAAGAC+TGG | - | chr2.3:19409359-19409378 | None:intergenic | 25.0% |
! | AAAATTTAACGTGTAAGACT+GGG | - | chr2.3:19409358-19409377 | None:intergenic | 25.0% |
! | AATTGTAGTATAGATATGCA+TGG | + | chr2.3:19409543-19409562 | MS.gene58381:intron | 25.0% |
! | GAAAAATGTGAAAATGAAGA+CGG | + | chr2.3:19410260-19410279 | MS.gene58381:intron | 25.0% |
! | GAAATTAATGATCAAAACCA+TGG | + | chr2.3:19409648-19409667 | MS.gene58381:intron | 25.0% |
!! | TAAACACATTTAAAGTCACA+GGG | + | chr2.3:19409884-19409903 | MS.gene58381:intron | 25.0% |
!!! | ATTGTTATTGCTATTTTGGT+CGG | - | chr2.3:19408979-19408998 | None:intergenic | 25.0% |
!!! | CTTCATTGTTATTGCTATTT+TGG | - | chr2.3:19408983-19409002 | None:intergenic | 25.0% |
AATACATTTCTGAGCTTGAA+AGG | + | chr2.3:19410096-19410115 | MS.gene58381:CDS | 30.0% | |
AGAAAAATCCCTGTTAATTG+AGG | + | chr2.3:19409414-19409433 | MS.gene58381:intron | 30.0% | |
ATCATAAATAGAACGTGCAT+GGG | - | chr2.3:19409271-19409290 | None:intergenic | 30.0% | |
GAAAAATCCCTGTTAATTGA+GGG | + | chr2.3:19409415-19409434 | MS.gene58381:intron | 30.0% | |
TAACAATGAAGAGAAACCAA+TGG | + | chr2.3:19408992-19409011 | MS.gene58381:CDS | 30.0% | |
TATCATAAATAGAACGTGCA+TGG | - | chr2.3:19409272-19409291 | None:intergenic | 30.0% | |
TGATGAAAATAATGCTCTTG+AGG | - | chr2.3:19409038-19409057 | None:intergenic | 30.0% | |
! | AAACACATTTAAAGTCACAG+GGG | + | chr2.3:19409885-19409904 | MS.gene58381:intron | 30.0% |
! | GTAAACACATTTAAAGTCAC+AGG | + | chr2.3:19409883-19409902 | MS.gene58381:intron | 30.0% |
!!! | ATACCAGAATTTTGGCTAAT+AGG | + | chr2.3:19410039-19410058 | MS.gene58381:intron | 30.0% |
AAATGTGAAAATGAAGACGG+AGG | + | chr2.3:19410263-19410282 | MS.gene58381:intron | 35.0% | |
CAGTAAGAATCATACGTTGA+TGG | - | chr2.3:19410323-19410342 | None:intergenic | 35.0% | |
TTGCCTATTAGCCAAAATTC+TGG | - | chr2.3:19410045-19410064 | None:intergenic | 35.0% | |
! | AACACATTTAAAGTCACAGG+GGG | + | chr2.3:19409886-19409905 | MS.gene58381:intron | 35.0% |
! | ATCTTTGAAAAGCTTGTCCT+GGG | - | chr2.3:19410385-19410404 | None:intergenic | 35.0% |
ACAACAGTGCCATAAAGCAA+CGG | + | chr2.3:19410346-19410365 | MS.gene58381:CDS | 40.0% | |
ATAAATAGAACGTGCATGGG+TGG | - | chr2.3:19409268-19409287 | None:intergenic | 40.0% | |
ATGTTCTCTGACAATGTTGC+CGG | + | chr2.3:19408897-19408916 | MS.gene58381:CDS | 40.0% | |
CCACAAAATTCTTGCATGGA+TGG | + | chr2.3:19409332-19409351 | MS.gene58381:intron | 40.0% | |
GTTGCCACAAAATTCTTGCA+TGG | + | chr2.3:19409328-19409347 | MS.gene58381:intron | 40.0% | |
TCATCATGAAGTGAAGCCTA+AGG | + | chr2.3:19409052-19409071 | MS.gene58381:CDS | 40.0% | |
TGAAGAGAAACCAATGGCAA+TGG | + | chr2.3:19408998-19409017 | MS.gene58381:CDS | 40.0% | |
! | AGATTACCTTTTGACCCTCT+TGG | - | chr2.3:19409177-19409196 | None:intergenic | 40.0% |
! | CAGGACAAGCTTTTCAAAGA+TGG | + | chr2.3:19410384-19410403 | MS.gene58381:CDS | 40.0% |
! | CATCTTTGAAAAGCTTGTCC+TGG | - | chr2.3:19410386-19410405 | None:intergenic | 40.0% |
! | CCATCCATGCAAGAATTTTG+TGG | - | chr2.3:19409335-19409354 | None:intergenic | 40.0% |
! | GATTACCTTTTGACCCTCTT+GGG | - | chr2.3:19409176-19409195 | None:intergenic | 40.0% |
!!! | GTTATTGCTATTTTGGTCGG+AGG | - | chr2.3:19408976-19408995 | None:intergenic | 40.0% |
AAACCGTTGTAGATCCCAAG+AGG | + | chr2.3:19409159-19409178 | MS.gene58381:CDS | 45.0% | |
AACCGTTGTAGATCCCAAGA+GGG | + | chr2.3:19409160-19409179 | MS.gene58381:CDS | 45.0% | |
ATCTACAACGGTTTCAGTGC+AGG | - | chr2.3:19409153-19409172 | None:intergenic | 45.0% | |
CCACGTACCCTCAATTAACA+GGG | - | chr2.3:19409425-19409444 | None:intergenic | 45.0% | |
CTAATAGGCAATCAGCTCAG+AGG | + | chr2.3:19410054-19410073 | MS.gene58381:CDS | 45.0% | |
GAAACCAATGGCAATGGTGA+TGG | + | chr2.3:19409004-19409023 | MS.gene58381:CDS | 45.0% | |
TAGATCCCAAGAGGGTCAAA+AGG | + | chr2.3:19409168-19409187 | MS.gene58381:CDS | 45.0% | |
TCATCAACGGCTTCATCCTT+AGG | - | chr2.3:19409071-19409090 | None:intergenic | 45.0% | |
TTCAGTGCAGGTGATGTTTC+CGG | - | chr2.3:19409141-19409160 | None:intergenic | 45.0% | |
! | AAGGAGCGTAACATCTTTGC+AGG | + | chr2.3:19410115-19410134 | MS.gene58381:CDS | 45.0% |
! | TGCTGCAATCCGTTGCTTTA+TGG | - | chr2.3:19410358-19410377 | None:intergenic | 45.0% |
!! | AAAGCAACGGATTGCAGCAT+TGG | + | chr2.3:19410359-19410378 | MS.gene58381:CDS | 45.0% |
!!! | TTGCTATTTTGGTCGGAGGA+TGG | - | chr2.3:19408972-19408991 | None:intergenic | 45.0% |
!! | AGAAATATATATAATAAATT+AGG | - | chr2.3:19410417-19410436 | None:intergenic | 5.0% |
!! | ATATTTCATATAATAAAATA+AGG | + | chr2.3:19409289-19409308 | MS.gene58381:intron | 5.0% |
AATAGAACGTGCATGGGTGG+TGG | - | chr2.3:19409265-19409284 | None:intergenic | 50.0% | |
ACATGAGCCGTCGTCATCAA+CGG | - | chr2.3:19409084-19409103 | None:intergenic | 50.0% | |
CGACGGCTCATGTAAAAACG+AGG | + | chr2.3:19409091-19409110 | MS.gene58381:CDS | 50.0% | |
CGGCTCATGTAAAAACGAGG+CGG | + | chr2.3:19409094-19409113 | MS.gene58381:CDS | 50.0% | |
CTCATGTAAAAACGAGGCGG+CGG | + | chr2.3:19409097-19409116 | MS.gene58381:CDS | 50.0% | |
GACCCTCTTGGGATCTACAA+CGG | - | chr2.3:19409165-19409184 | None:intergenic | 50.0% | |
GCAATCAGCTCAGAGGTCAA+GGG | + | chr2.3:19410061-19410080 | MS.gene58381:CDS | 50.0% | |
GCATCCATCACCATTGCCAT+TGG | - | chr2.3:19409011-19409030 | None:intergenic | 50.0% | |
GCCACGTACCCTCAATTAAC+AGG | - | chr2.3:19409426-19409445 | None:intergenic | 50.0% | |
GTCACCACGAGTTGCATTCT+TGG | + | chr2.3:19410296-19410315 | MS.gene58381:CDS | 50.0% | |
GTGATGTTTCCGGAGGAAGA+TGG | - | chr2.3:19409131-19409150 | None:intergenic | 50.0% | |
TGGTCCAAGAATGCAACTCG+TGG | - | chr2.3:19410303-19410322 | None:intergenic | 50.0% | |
! | CCCTGTTAATTGAGGGTACG+TGG | + | chr2.3:19409422-19409441 | MS.gene58381:intron | 50.0% |
!! | GATGAAGCCGTTGATGACGA+CGG | + | chr2.3:19409074-19409093 | MS.gene58381:CDS | 50.0% |
AGTGCAGGTGATGTTTCCGG+AGG | - | chr2.3:19409138-19409157 | None:intergenic | 55.0% | |
ATGTAAAAACGAGGCGGCGG+CGG | + | chr2.3:19409100-19409119 | MS.gene58381:CDS | 55.0% | |
CAAAGGCGGGAAAGATACGC+CGG | - | chr2.3:19408919-19408938 | None:intergenic | 55.0% | |
GACGTCGATGACAACGGCAA+AGG | - | chr2.3:19408936-19408955 | None:intergenic | 55.0% | |
GGCAATCAGCTCAGAGGTCA+AGG | + | chr2.3:19410060-19410079 | MS.gene58381:CDS | 55.0% | |
GGGTTGGACGTCGATGACAA+CGG | - | chr2.3:19408942-19408961 | None:intergenic | 55.0% | |
GTCGATGACAACGGCAAAGG+CGG | - | chr2.3:19408933-19408952 | None:intergenic | 55.0% | |
TCGATGACAACGGCAAAGGC+GGG | - | chr2.3:19408932-19408951 | None:intergenic | 55.0% | |
! | CGTGCATGGGTGGTGGTGAT+TGG | - | chr2.3:19409258-19409277 | None:intergenic | 60.0% |
! | GGAGGATGGTGACGATGGGT+TGG | - | chr2.3:19408958-19408977 | None:intergenic | 60.0% |
! | GGTCGGAGGATGGTGACGAT+GGG | - | chr2.3:19408962-19408981 | None:intergenic | 60.0% |
! | TGGTCGGAGGATGGTGACGA+TGG | - | chr2.3:19408963-19408982 | None:intergenic | 60.0% |
!! | ACGGATTGCAGCATTGGCCC+AGG | + | chr2.3:19410365-19410384 | MS.gene58381:CDS | 60.0% |
TAAAAACGAGGCGGCGGCGG+CGG | + | chr2.3:19409103-19409122 | MS.gene58381:CDS | 65.0% | |
!! | GCGGCGGTGCCATCTTCCTC+CGG | + | chr2.3:19409119-19409138 | MS.gene58381:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 19408897 | 19410551 | 19408897 | ID=MS.gene58381 |
chr2.3 | mRNA | 19408897 | 19410551 | 19408897 | ID=MS.gene58381.t1;Parent=MS.gene58381 |
chr2.3 | exon | 19408897 | 19409189 | 19408897 | ID=MS.gene58381.t1.exon1;Parent=MS.gene58381.t1 |
chr2.3 | CDS | 19408897 | 19409189 | 19408897 | ID=cds.MS.gene58381.t1;Parent=MS.gene58381.t1 |
chr2.3 | exon | 19410046 | 19410136 | 19410046 | ID=MS.gene58381.t1.exon2;Parent=MS.gene58381.t1 |
chr2.3 | CDS | 19410046 | 19410136 | 19410046 | ID=cds.MS.gene58381.t1;Parent=MS.gene58381.t1 |
chr2.3 | exon | 19410279 | 19410405 | 19410279 | ID=MS.gene58381.t1.exon3;Parent=MS.gene58381.t1 |
chr2.3 | CDS | 19410279 | 19410405 | 19410279 | ID=cds.MS.gene58381.t1;Parent=MS.gene58381.t1 |
chr2.3 | exon | 19410547 | 19410551 | 19410547 | ID=MS.gene58381.t1.exon4;Parent=MS.gene58381.t1 |
chr2.3 | CDS | 19410547 | 19410551 | 19410547 | ID=cds.MS.gene58381.t1;Parent=MS.gene58381.t1 |
Gene Sequence |
Protein sequence |