Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58573.t1 | AES96405.2 | 81.9 | 83 | 15 | 0 | 1 | 83 | 1 | 83 | 2.90E-29 | 138.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58573.t1 | Q9SRH9 | 45.1 | 82 | 43 | 1 | 13 | 92 | 135 | 216 | 2.8e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58573.t1 | G7K6X3 | 81.9 | 83 | 15 | 0 | 1 | 83 | 1 | 83 | 2.1e-29 | 138.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene58573.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58573.t1 | MTR_5g036790 | 81.928 | 83 | 15 | 0 | 1 | 83 | 1 | 83 | 9.27e-45 | 142 |
| MS.gene58573.t1 | MTR_5g036820 | 69.412 | 85 | 24 | 1 | 1 | 83 | 1 | 85 | 1.80e-35 | 118 |
| MS.gene58573.t1 | MTR_6g008970 | 50.000 | 70 | 35 | 0 | 13 | 82 | 142 | 211 | 2.19e-17 | 78.2 |
| MS.gene58573.t1 | MTR_6g008995 | 49.254 | 67 | 34 | 0 | 16 | 82 | 117 | 183 | 2.31e-16 | 75.1 |
| MS.gene58573.t1 | MTR_7g013525 | 52.113 | 71 | 33 | 1 | 6 | 75 | 1 | 71 | 2.79e-16 | 69.3 |
| MS.gene58573.t1 | MTR_5g036670 | 49.351 | 77 | 37 | 1 | 16 | 92 | 125 | 199 | 4.47e-16 | 74.3 |
| MS.gene58573.t1 | MTR_6g008995 | 47.143 | 70 | 37 | 0 | 13 | 82 | 57 | 126 | 6.82e-15 | 70.9 |
| MS.gene58573.t1 | MTR_7g013410 | 44.118 | 68 | 38 | 0 | 15 | 82 | 74 | 141 | 4.21e-14 | 65.5 |
| MS.gene58573.t1 | MTR_8g062700 | 44.776 | 67 | 37 | 0 | 16 | 82 | 124 | 190 | 4.27e-13 | 65.9 |
| MS.gene58573.t1 | MTR_8g062700 | 44.776 | 67 | 37 | 0 | 16 | 82 | 124 | 190 | 4.27e-13 | 65.9 |
| MS.gene58573.t1 | MTR_3g437480 | 83.871 | 31 | 5 | 0 | 48 | 78 | 1 | 31 | 1.96e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58573.t1 | AT3G01320 | 45.122 | 82 | 43 | 1 | 13 | 92 | 135 | 216 | 3.72e-17 | 77.4 |
| MS.gene58573.t1 | AT3G01320 | 45.122 | 82 | 43 | 1 | 13 | 92 | 135 | 216 | 3.72e-17 | 77.4 |
| MS.gene58573.t1 | AT5G15020 | 47.887 | 71 | 37 | 0 | 12 | 82 | 128 | 198 | 2.80e-16 | 75.1 |
| MS.gene58573.t1 | AT5G15020 | 47.887 | 71 | 37 | 0 | 12 | 82 | 128 | 198 | 2.80e-16 | 75.1 |
| MS.gene58573.t1 | AT1G10450 | 49.254 | 67 | 34 | 0 | 16 | 82 | 113 | 179 | 1.89e-15 | 72.8 |
| MS.gene58573.t1 | AT1G10450 | 49.254 | 67 | 34 | 0 | 16 | 82 | 113 | 179 | 1.89e-15 | 72.8 |
| MS.gene58573.t1 | AT1G10450 | 49.254 | 67 | 34 | 0 | 16 | 82 | 164 | 230 | 1.89e-15 | 72.8 |
| MS.gene58573.t1 | AT1G70060 | 45.122 | 82 | 44 | 1 | 1 | 82 | 83 | 163 | 2.43e-15 | 72.4 |
| MS.gene58573.t1 | AT1G70060 | 45.122 | 82 | 44 | 1 | 1 | 82 | 83 | 163 | 2.43e-15 | 72.4 |
| MS.gene58573.t1 | AT1G24190 | 47.436 | 78 | 41 | 0 | 16 | 93 | 96 | 173 | 3.10e-15 | 72.0 |
| MS.gene58573.t1 | AT1G24190 | 47.436 | 78 | 41 | 0 | 16 | 93 | 96 | 173 | 3.10e-15 | 72.0 |
| MS.gene58573.t1 | AT1G24190 | 47.436 | 78 | 41 | 0 | 16 | 93 | 96 | 173 | 3.10e-15 | 72.0 |
| MS.gene58573.t1 | AT1G59890 | 43.284 | 67 | 38 | 0 | 16 | 82 | 125 | 191 | 7.72e-13 | 65.1 |
| MS.gene58573.t1 | AT1G59890 | 43.284 | 67 | 38 | 0 | 16 | 82 | 125 | 191 | 7.72e-13 | 65.1 |
| MS.gene58573.t1 | AT1G59890 | 43.284 | 67 | 38 | 0 | 16 | 82 | 125 | 191 | 7.72e-13 | 65.1 |
| MS.gene58573.t1 | AT1G59890 | 43.284 | 67 | 38 | 0 | 16 | 82 | 125 | 191 | 7.72e-13 | 65.1 |
| MS.gene58573.t1 | AT1G70030 | 40.000 | 75 | 44 | 1 | 8 | 82 | 84 | 157 | 6.77e-12 | 60.1 |
| MS.gene58573.t1 | AT1G24200 | 50.847 | 59 | 29 | 0 | 24 | 82 | 101 | 159 | 9.44e-11 | 57.8 |
Find 36 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGGTTTGTGTTTCGGATC+TGG | 0.180402 | 5.3:-25035186 | MS.gene58573:CDS |
| CTCGGTCTGGGTTTGTGTTT+CGG | 0.231402 | 5.3:-25035192 | MS.gene58573:CDS |
| GGCTGCTGTTGGTTTAGATT+TGG | 0.279823 | 5.3:-25035224 | MS.gene58573:CDS |
| TGGGTTTGTGTTTCGGATCT+GGG | 0.356565 | 5.3:-25035185 | MS.gene58573:CDS |
| TTGGACCTCGAATCTCGGTC+TGG | 0.378427 | 5.3:-25035205 | MS.gene58573:CDS |
| TGGCCGCCGCGTCGGTTCTC+TGG | 0.382777 | 5.3:-25035328 | MS.gene58573:CDS |
| GCCTCCTTGTTCCATGTTAA+CGG | 0.423003 | 5.3:+25035244 | None:intergenic |
| TGGACCTCGAATCTCGGTCT+GGG | 0.441329 | 5.3:-25035204 | MS.gene58573:CDS |
| TGAAAAGAATATACGCTAAC+CGG | 0.465728 | 5.3:-25036609 | MS.gene58573:CDS |
| GGCCATGATGACCTCATTGA+TGG | 0.490730 | 5.3:-25036141 | MS.gene58573:CDS |
| GCGTTTCGCCGCCGTTAACA+TGG | 0.496099 | 5.3:-25035255 | MS.gene58573:CDS |
| GTTCACGGTGGCCGCCGCGT+CGG | 0.497989 | 5.3:-25035336 | MS.gene58573:CDS |
| GTTGTTGTTAGCGAAGTTCA+CGG | 0.517131 | 5.3:-25035351 | MS.gene58573:intron |
| TAGATTTGGACCTCGAATCT+CGG | 0.523603 | 5.3:-25035210 | MS.gene58573:CDS |
| AGCTTCAGATCAACAAGCTA+TGG | 0.534393 | 5.3:+25035162 | None:intergenic |
| GCGGCGAAACGCGACGAATG+AGG | 0.536754 | 5.3:+25035266 | None:intergenic |
| TGTTGCGAGATATGTGTTCA+AGG | 0.537764 | 5.3:-25036566 | MS.gene58573:CDS |
| CGGCGAAACGCGACGAATGA+GGG | 0.537777 | 5.3:+25035267 | None:intergenic |
| ACCCATCAATGAGGTCATCA+TGG | 0.541672 | 5.3:+25036139 | None:intergenic |
| TGGAACAAGGAGGCTGCTGT+TGG | 0.562773 | 5.3:-25035235 | MS.gene58573:CDS |
| AAGAATATACGCTAACCGGC+CGG | 0.564322 | 5.3:-25036605 | MS.gene58573:CDS |
| CAAACCCAGACCGAGATTCG+AGG | 0.585286 | 5.3:+25035200 | None:intergenic |
| GCCATGATGACCTCATTGAT+GGG | 0.591592 | 5.3:-25036140 | MS.gene58573:CDS |
| AAACGACGAATACACATGAC+GGG | 0.601601 | 5.3:+25036416 | None:intergenic |
| AAACCAGAGAACCGACGCGG+CGG | 0.606912 | 5.3:+25035325 | None:intergenic |
| AATGATAATTCACCACCGGC+CGG | 0.615597 | 5.3:+25036590 | None:intergenic |
| GAGATATGTGTTCAAGGTGA+AGG | 0.619178 | 5.3:-25036560 | MS.gene58573:intron |
| ACATAATGATAATTCACCAC+CGG | 0.640520 | 5.3:+25036586 | None:intergenic |
| GAAACGACGAATACACATGA+CGG | 0.641724 | 5.3:+25036415 | None:intergenic |
| GCCGCCGTTAACATGGAACA+AGG | 0.648412 | 5.3:-25035248 | MS.gene58573:CDS |
| AATATACGCTAACCGGCCGG+TGG | 0.651380 | 5.3:-25036602 | MS.gene58573:CDS |
| TCCTTGTTCCATGTTAACGG+CGG | 0.673954 | 5.3:+25035247 | None:intergenic |
| AATTTCTAAACCCATCAATG+AGG | 0.679105 | 5.3:+25036130 | None:intergenic |
| TCTTGATGAAGTCATTCGCG+AGG | 0.697148 | 5.3:-25036355 | MS.gene58573:intron |
| GTTGTTAGCGAAGTTCACGG+TGG | 0.741334 | 5.3:-25035348 | MS.gene58573:intron |
| GCCGTTAACATGGAACAAGG+AGG | 0.758108 | 5.3:-25035245 | MS.gene58573:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGGAAATAAAAATAAAA+AGG | + | chr5.3:25035574-25035593 | None:intergenic | 15.0% |
| !! | TAATATGCATTCGTTTAAAT+GGG | - | chr5.3:25035818-25035837 | MS.gene58573:intron | 20.0% |
| !! | TTAATATGCATTCGTTTAAA+TGG | - | chr5.3:25035817-25035836 | MS.gene58573:intron | 20.0% |
| !!! | AATTATGATTTTACTTCTTC+AGG | - | chr5.3:25035610-25035629 | MS.gene58573:intron | 20.0% |
| !!! | TAAAAAGGCATATATGTAAT+TGG | + | chr5.3:25035559-25035578 | None:intergenic | 20.0% |
| !!! | TATATTCTTTTCATCTTATG+TGG | + | chr5.3:25035175-25035194 | None:intergenic | 20.0% |
| !!! | TGATAGCAATAGTATTTTTA+TGG | + | chr5.3:25035515-25035534 | None:intergenic | 20.0% |
| ! | AATATGCATTCGTTTAAATG+GGG | - | chr5.3:25035819-25035838 | MS.gene58573:intron | 25.0% |
| ! | AGTTTGGGTACAAAAATAAT+CGG | - | chr5.3:25036254-25036273 | MS.gene58573:intron | 25.0% |
| ! | CGATGTAGTAAATCAAATTT+GGG | - | chr5.3:25036046-25036065 | MS.gene58573:intron | 25.0% |
| ! | GGTGAAGGTAAATTATATTA+TGG | - | chr5.3:25035246-25035265 | MS.gene58573:CDS | 25.0% |
| !! | TTTTTAATGTTTGTAGTCTG+CGG | - | chr5.3:25035791-25035810 | MS.gene58573:intron | 25.0% |
| AATTTCTAAACCCATCAATG+AGG | + | chr5.3:25035664-25035683 | None:intergenic | 30.0% | |
| ACATAATGATAATTCACCAC+CGG | + | chr5.3:25035208-25035227 | None:intergenic | 30.0% | |
| CAAAAGATAGGGTTTGAATT+TGG | - | chr5.3:25035743-25035762 | MS.gene58573:intron | 30.0% | |
| GCGATGTAGTAAATCAAATT+TGG | - | chr5.3:25036045-25036064 | MS.gene58573:intron | 30.0% | |
| TAAAATGAGTATCACACAAG+AGG | + | chr5.3:25035591-25035610 | None:intergenic | 30.0% | |
| TGAAAAGAATATACGCTAAC+CGG | - | chr5.3:25035182-25035201 | MS.gene58573:CDS | 30.0% | |
| TTGCAATTGTGCAAAAGATA+GGG | - | chr5.3:25035732-25035751 | MS.gene58573:intron | 30.0% | |
| TTTGCAATTGTGCAAAAGAT+AGG | - | chr5.3:25035731-25035750 | MS.gene58573:intron | 30.0% | |
| ! | AGGTTACAATTGAATTTTGG+AGG | - | chr5.3:25035941-25035960 | MS.gene58573:intron | 30.0% |
| ! | ATTGACTTACAGCATCAATA+TGG | - | chr5.3:25036182-25036201 | MS.gene58573:intron | 30.0% |
| ! | CGTAGGTTACAATTGAATTT+TGG | - | chr5.3:25035938-25035957 | MS.gene58573:intron | 30.0% |
| ! | GGGTTAAACAAAAAAAGTGT+TGG | + | chr5.3:25036507-25036526 | None:intergenic | 30.0% |
| ! | GGTTACAATTGAATTTTGGA+GGG | - | chr5.3:25035942-25035961 | MS.gene58573:intron | 30.0% |
| ! | TGATTTTTCACTACACAACT+TGG | - | chr5.3:25036132-25036151 | MS.gene58573:CDS | 30.0% |
| ! | TTTTAATGTTTGTAGTCTGC+GGG | - | chr5.3:25035792-25035811 | MS.gene58573:intron | 30.0% |
| !! | GTTACAATTGAATTTTGGAG+GGG | - | chr5.3:25035943-25035962 | MS.gene58573:intron | 30.0% |
| !! | TTACAATTGAATTTTGGAGG+GGG | - | chr5.3:25035944-25035963 | MS.gene58573:intron | 30.0% |
| AAACCAAGTTATCTCTAGCT+TGG | + | chr5.3:25035980-25035999 | None:intergenic | 35.0% | |
| ACATCAAGCTTTCCAATTTG+CGG | - | chr5.3:25036326-25036345 | MS.gene58573:intron | 35.0% | |
| ACTCAATCTTCTCAATCAGA+TGG | + | chr5.3:25035916-25035935 | None:intergenic | 35.0% | |
| AGAAATTTCATTCCTCTACG+TGG | - | chr5.3:25035677-25035696 | MS.gene58573:intron | 35.0% | |
| ! | ATCAAATTTGGGACTTTGAG+AGG | - | chr5.3:25036057-25036076 | MS.gene58573:intron | 35.0% |
| ! | TGAATCGTCAGTTTGTTTCA+TGG | + | chr5.3:25036105-25036124 | None:intergenic | 35.0% |
| !! | ACAAAAAAAGTGTTGGTTGC+CGG | + | chr5.3:25036500-25036519 | None:intergenic | 35.0% |
| AAACGACGAATACACATGAC+GGG | + | chr5.3:25035378-25035397 | None:intergenic | 40.0% | |
| AAAGCTTGATGTTGATCAGC+TGG | + | chr5.3:25036318-25036337 | None:intergenic | 40.0% | |
| AGTCCACAACTAGTGTAGTT+TGG | - | chr5.3:25036238-25036257 | MS.gene58573:intron | 40.0% | |
| CATATATACTAGCCACGTAG+AGG | + | chr5.3:25035692-25035711 | None:intergenic | 40.0% | |
| CTTCCAAGCTAGAGATAACT+TGG | - | chr5.3:25035974-25035993 | MS.gene58573:intron | 40.0% | |
| GAAACGACGAATACACATGA+CGG | + | chr5.3:25035379-25035398 | None:intergenic | 40.0% | |
| GACTTACAGCATCAATATGG+TGG | - | chr5.3:25036185-25036204 | MS.gene58573:intron | 40.0% | |
| GAGATATGTGTTCAAGGTGA+AGG | - | chr5.3:25035231-25035250 | MS.gene58573:CDS | 40.0% | |
| GATTTACTACATCGCACAGT+CGG | + | chr5.3:25036040-25036059 | None:intergenic | 40.0% | |
| GTCCACAACTAGTGTAGTTT+GGG | - | chr5.3:25036239-25036258 | MS.gene58573:intron | 40.0% | |
| TACCCAAACTACACTAGTTG+TGG | + | chr5.3:25036244-25036263 | None:intergenic | 40.0% | |
| TAGATTTGGACCTCGAATCT+CGG | - | chr5.3:25036581-25036600 | MS.gene58573:CDS | 40.0% | |
| TCTAAAGAGGAGAACAGGAA+GGG | + | chr5.3:25036416-25036435 | None:intergenic | 40.0% | |
| TGTTGCGAGATATGTGTTCA+AGG | - | chr5.3:25035225-25035244 | MS.gene58573:CDS | 40.0% | |
| TTGAGAAGATTGAGTCTCGT+AGG | - | chr5.3:25035921-25035940 | MS.gene58573:intron | 40.0% | |
| ! | ATCTCTAGCTTGGAAGAGTT+GGG | + | chr5.3:25035970-25035989 | None:intergenic | 40.0% |
| ! | GAGGTGATTAGCGTCTTATT+AGG | - | chr5.3:25036076-25036095 | MS.gene58573:intron | 40.0% |
| ! | GCATCAATATGGTGGCATTT+TGG | - | chr5.3:25036193-25036212 | MS.gene58573:intron | 40.0% |
| ! | GTTGTTGTTAGCGAAGTTCA+CGG | - | chr5.3:25036440-25036459 | MS.gene58573:intron | 40.0% |
| ! | TATCTCTAGCTTGGAAGAGT+TGG | + | chr5.3:25035971-25035990 | None:intergenic | 40.0% |
| ! | TCCTGTTCTCCTCTTTAGAA+CGG | - | chr5.3:25036417-25036436 | MS.gene58573:CDS | 40.0% |
| ! | TTCTAAAGAGGAGAACAGGA+AGG | + | chr5.3:25036417-25036436 | None:intergenic | 40.0% |
| !! | AACAACAACCCGTTCTAAAG+AGG | + | chr5.3:25036429-25036448 | None:intergenic | 40.0% |
| !!! | TTCTCTGGTTTTTCTCCTTC+CGG | - | chr5.3:25036478-25036497 | MS.gene58573:intron | 40.0% |
| AAGAATATACGCTAACCGGC+CGG | - | chr5.3:25035186-25035205 | MS.gene58573:CDS | 45.0% | |
| AATGATAATTCACCACCGGC+CGG | + | chr5.3:25035204-25035223 | None:intergenic | 45.0% | |
| ACCCATCAATGAGGTCATCA+TGG | + | chr5.3:25035655-25035674 | None:intergenic | 45.0% | |
| CATCGTTAACCACCGCAAAT+TGG | + | chr5.3:25036341-25036360 | None:intergenic | 45.0% | |
| GCCATGATGACCTCATTGAT+GGG | - | chr5.3:25035651-25035670 | MS.gene58573:intron | 45.0% | |
| GCCTCCTTGTTCCATGTTAA+CGG | + | chr5.3:25036550-25036569 | None:intergenic | 45.0% | |
| GTGGTTAACGATGTAGATGG+TGG | - | chr5.3:25036348-25036367 | MS.gene58573:intron | 45.0% | |
| TCAAGCTTTCCAATTTGCGG+TGG | - | chr5.3:25036329-25036348 | MS.gene58573:intron | 45.0% | |
| TCCTTGTTCCATGTTAACGG+CGG | + | chr5.3:25036547-25036566 | None:intergenic | 45.0% | |
| TCTTGATGAAGTCATTCGCG+AGG | - | chr5.3:25035436-25035455 | MS.gene58573:intron | 45.0% | |
| TGGGTTTGTGTTTCGGATCT+GGG | - | chr5.3:25036606-25036625 | MS.gene58573:CDS | 45.0% | |
| ! | CAGGTTGCTGAGCTTTTTGA+AGG | - | chr5.3:25035629-25035648 | MS.gene58573:intron | 45.0% |
| ! | GTTAACGATGTAGATGGTGG+TGG | - | chr5.3:25036351-25036370 | MS.gene58573:intron | 45.0% |
| !! | AAAAAGTGTTGGTTGCCGGA+AGG | + | chr5.3:25036496-25036515 | None:intergenic | 45.0% |
| !! | CCTGTTCTCCTCTTTAGAAC+GGG | - | chr5.3:25036418-25036437 | MS.gene58573:CDS | 45.0% |
| !! | GGCTGCTGTTGGTTTAGATT+TGG | - | chr5.3:25036567-25036586 | MS.gene58573:CDS | 45.0% |
| AAGAGGAGAACAGGAAGGGA+AGG | + | chr5.3:25036412-25036431 | None:intergenic | 50.0% | |
| CTCGGTCTGGGTTTGTGTTT+CGG | - | chr5.3:25036599-25036618 | MS.gene58573:CDS | 50.0% | |
| CTGGGTTTGTGTTTCGGATC+TGG | - | chr5.3:25036605-25036624 | MS.gene58573:CDS | 50.0% | |
| GAAAAACCAGAGAACCGACG+CGG | + | chr5.3:25036472-25036491 | None:intergenic | 50.0% | |
| GCCGTTAACATGGAACAAGG+AGG | - | chr5.3:25036546-25036565 | MS.gene58573:intron | 50.0% | |
| GCGGTGGTTAACGATGTAGA+TGG | - | chr5.3:25036345-25036364 | MS.gene58573:intron | 50.0% | |
| GGCCATGATGACCTCATTGA+TGG | - | chr5.3:25035650-25035669 | MS.gene58573:intron | 50.0% | |
| GTTGTTAGCGAAGTTCACGG+TGG | - | chr5.3:25036443-25036462 | MS.gene58573:intron | 50.0% | |
| !! | ACGATGTAGATGGTGGTGGT+CGG | - | chr5.3:25036355-25036374 | MS.gene58573:intron | 50.0% |
| !! | CCCGTTCTAAAGAGGAGAAC+AGG | + | chr5.3:25036421-25036440 | None:intergenic | 50.0% |
| AACAGGAAGGGAAGGCGATG+TGG | + | chr5.3:25036404-25036423 | None:intergenic | 55.0% | |
| AATATACGCTAACCGGCCGG+TGG | - | chr5.3:25035189-25035208 | MS.gene58573:CDS | 55.0% | |
| CAAACCCAGACCGAGATTCG+AGG | + | chr5.3:25036594-25036613 | None:intergenic | 55.0% | |
| GCCGCCGTTAACATGGAACA+AGG | - | chr5.3:25036543-25036562 | MS.gene58573:intron | 55.0% | |
| TGGAACAAGGAGGCTGCTGT+TGG | - | chr5.3:25036556-25036575 | MS.gene58573:intron | 55.0% | |
| TGGACCTCGAATCTCGGTCT+GGG | - | chr5.3:25036587-25036606 | MS.gene58573:CDS | 55.0% | |
| TTGGACCTCGAATCTCGGTC+TGG | - | chr5.3:25036586-25036605 | MS.gene58573:CDS | 55.0% | |
| AAACCAGAGAACCGACGCGG+CGG | + | chr5.3:25036469-25036488 | None:intergenic | 60.0% | |
| CGGCGAAACGCGACGAATGA+GGG | + | chr5.3:25036527-25036546 | None:intergenic | 60.0% | |
| GCGTTTCGCCGCCGTTAACA+TGG | - | chr5.3:25036536-25036555 | MS.gene58573:intron | 60.0% | |
| GGAAGGGAAGGCGATGTGGA+TGG | + | chr5.3:25036400-25036419 | None:intergenic | 60.0% | |
| GGTGGTCGGTGATGTGACGA+TGG | - | chr5.3:25036369-25036388 | MS.gene58573:CDS | 60.0% | |
| GCGGCGAAACGCGACGAATG+AGG | + | chr5.3:25036528-25036547 | None:intergenic | 65.0% | |
| GTTCACGGTGGCCGCCGCGT+CGG | - | chr5.3:25036455-25036474 | MS.gene58573:intron | 75.0% | |
| !! | TGGCCGCCGCGTCGGTTCTC+TGG | - | chr5.3:25036463-25036482 | MS.gene58573:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 25035166 | 25036647 | 25035166 | ID=MS.gene58573 |
| chr5.3 | mRNA | 25035166 | 25036647 | 25035166 | ID=MS.gene58573.t1;Parent=MS.gene58573 |
| chr5.3 | exon | 25036561 | 25036647 | 25036561 | ID=MS.gene58573.t1.exon1;Parent=MS.gene58573.t1 |
| chr5.3 | CDS | 25036561 | 25036647 | 25036561 | ID=cds.MS.gene58573.t1;Parent=MS.gene58573.t1 |
| chr5.3 | exon | 25036356 | 25036454 | 25036356 | ID=MS.gene58573.t1.exon2;Parent=MS.gene58573.t1 |
| chr5.3 | CDS | 25036356 | 25036454 | 25036356 | ID=cds.MS.gene58573.t1;Parent=MS.gene58573.t1 |
| chr5.3 | exon | 25036118 | 25036181 | 25036118 | ID=MS.gene58573.t1.exon3;Parent=MS.gene58573.t1 |
| chr5.3 | CDS | 25036118 | 25036181 | 25036118 | ID=cds.MS.gene58573.t1;Parent=MS.gene58573.t1 |
| chr5.3 | exon | 25035166 | 25035362 | 25035166 | ID=MS.gene58573.t1.exon4;Parent=MS.gene58573.t1 |
| chr5.3 | CDS | 25035166 | 25035362 | 25035166 | ID=cds.MS.gene58573.t1;Parent=MS.gene58573.t1 |
| Gene Sequence |
| Protein sequence |
